BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042931
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Query: 108 LHLSRDYGSFEEPVQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSK--LQRLDLSS 165
L LS + S E P L+ L+ S L L S +G I P + K LQ L L +
Sbjct: 345 LDLSFNEFSGELPESLTNLSAS----LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 166 NRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIG 225
N TG IP + N LV L++S N L+GT+PS+LGSL+ L+++ L N L G +PQE+
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 226 NLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGS 285
+K L L L N L G IPS L TNLN++SLS N G +P+ IG L+NL L + +
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 286 NSLIGPIPXXXXXXXXXXXXXXXCNQFSSSIP 317
NS G IP N F+ +IP
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 5/151 (3%)
Query: 98 TCNSAGSIIGLHLSRDYGSFEEPVQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSK 157
T ++ ++ LHLS +Y S P L L+ L +L L G IP E+ +
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 158 LQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLS 217
L+ L L N LTG IPS + N NL ++++S N LTG +P +G L NL + LS N S
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 218 GPLPQEIGNLKNLMELDLGTNSLIGPIPSTL 248
G +P E+G+ ++L+ LDL TN G IP+ +
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 121 VQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLR 180
++ QLN N N+T + + G P + LD+S N L+G IP EIG++
Sbjct: 596 IRSEQLNRLSTRNPCNITSRVY--GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 181 NLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSL 240
L LN+ N ++G++P +G L L + LS N+L G +PQ + L L E+DL N+L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 241 IGPIP 245
GPIP
Sbjct: 714 SGPIP 718
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 46/207 (22%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEI---------------- 176
NL L + +G+IP E+ L LDL++N G+IP+ +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 177 ----------------GNLRNLVYL--------------NISKNILTGTVPSTLGSLTNL 206
GNL + NI+ + G T + ++
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGG 266
+ +SYN LSG +P+EIG++ L L+LG N + G IP +G L LN + LS N G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 267 LLPQEIGNLKNLIELNVGSNSLIGPIP 293
+PQ + L L E+++ +N+L GPIP
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 144 LAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSL 203
L+G IP EI ++ L L+L N ++GSIP E+G+LR L L++S N L G +P + +L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 204 TNLKNMGLSYNQLSGPLPQ 222
T L + LS N LSGP+P+
Sbjct: 701 TMLTEIDLSNNNLSGPIPE 719
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%)
Query: 151 EISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMG 210
+++ LS +++S G N ++++L++S N+L+G +P +GS+ L +
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 211 LSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
L +N +SG +P E+G+L+ L LDL +N L G IP + LT L + LS N G +P+
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 46/236 (19%)
Query: 134 LENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILT 193
LE L L G IP +S + L + LS+NRLTG IP IG L NL L +S N +
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 194 GTVPSTLGSLTNLKNMGLSYNQLSGPLP-----------------------------QEI 224
G +P+ LG +L + L+ N +G +P +E
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 225 GNLKNLMEL-----------------DLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGL 267
NL+E ++ + G T ++ ++ +S NM G
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 268 LPQEIGNLKNLIELNVGSNSLIGPIPXXXXXXXXXXXXXXXCNQFSSSIPNDTTKL 323
+P+EIG++ L LN+G N + G IP N+ IP + L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 83/187 (44%), Gaps = 30/187 (16%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NLE L S + IP + S LQ LD+S N+L+G I L LNIS N
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIP------ 245
G +P L +L+ + L+ N+ +G +P + G L LDL N G +P
Sbjct: 257 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 246 -------------------STLGRLTNLNYMSLSRNMFGGLLPQEIGNLK-NLIELNVGS 285
TL ++ L + LS N F G LP+ + NL +L+ L++ S
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 286 NSLIGPI 292
N+ GPI
Sbjct: 375 NNFSGPI 381
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPP--EISALSKLQRLDLSSNRLTGSIPSEIGN---LRNL 182
F C +L +L L+G + + + S L+ L++SSN L P ++ L +L
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSL 150
Query: 183 VYLNISKNILTGTVPSTLG-----SLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGT 237
L++S N ++G + +G LK++ +S N++SG + ++ NL LD+ +
Sbjct: 151 EVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSS 206
Query: 238 NSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSLIGPIP 293
N+ IP LG + L ++ +S N G + I L LN+ SN +GPIP
Sbjct: 207 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Query: 108 LHLSRDYGSFEEPVQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSK--LQRLDLSS 165
L LS + S E P L+ L+ S L L S +G I P + K LQ L L +
Sbjct: 348 LDLSFNEFSGELPESLTNLSAS----LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 166 NRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIG 225
N TG IP + N LV L++S N L+GT+PS+LGSL+ L+++ L N L G +PQE+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 226 NLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGS 285
+K L L L N L G IPS L TNLN++SLS N G +P+ IG L+NL L + +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 286 NSLIGPIPXXXXXXXXXXXXXXXCNQFSSSIP 317
NS G IP N F+ +IP
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 5/151 (3%)
Query: 98 TCNSAGSIIGLHLSRDYGSFEEPVQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSK 157
T ++ ++ LHLS +Y S P L L+ L +L L G IP E+ +
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 158 LQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLS 217
L+ L L N LTG IPS + N NL ++++S N LTG +P +G L NL + LS N S
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 218 GPLPQEIGNLKNLMELDLGTNSLIGPIPSTL 248
G +P E+G+ ++L+ LDL TN G IP+ +
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 121 VQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLR 180
++ QLN N N+T + + G P + LD+S N L+G IP EIG++
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVY--GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 181 NLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSL 240
L LN+ N ++G++P +G L L + LS N+L G +PQ + L L E+DL N+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 241 IGPIP 245
GPIP
Sbjct: 717 SGPIP 721
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 46/207 (22%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEI---------------- 176
NL L + +G+IP E+ L LDL++N G+IP+ +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 177 ----------------GNLRNLVYL--------------NISKNILTGTVPSTLGSLTNL 206
GNL + NI+ + G T + ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGG 266
+ +SYN LSG +P+EIG++ L L+LG N + G IP +G L LN + LS N G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 267 LLPQEIGNLKNLIELNVGSNSLIGPIP 293
+PQ + L L E+++ +N+L GPIP
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 144 LAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSL 203
L+G IP EI ++ L L+L N ++GSIP E+G+LR L L++S N L G +P + +L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 204 TNLKNMGLSYNQLSGPLPQ 222
T L + LS N LSGP+P+
Sbjct: 704 TMLTEIDLSNNNLSGPIPE 722
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%)
Query: 151 EISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMG 210
+++ LS +++S G N ++++L++S N+L+G +P +GS+ L +
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 211 LSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
L +N +SG +P E+G+L+ L LDL +N L G IP + LT L + LS N G +P+
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 46/236 (19%)
Query: 134 LENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILT 193
LE L L G IP +S + L + LS+NRLTG IP IG L NL L +S N +
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 194 GTVPSTLGSLTNLKNMGLSYNQLSGPLP-----------------------------QEI 224
G +P+ LG +L + L+ N +G +P +E
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 225 GNLKNLMEL-----------------DLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGL 267
NL+E ++ + G T ++ ++ +S NM G
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 268 LPQEIGNLKNLIELNVGSNSLIGPIPXXXXXXXXXXXXXXXCNQFSSSIPNDTTKL 323
+P+EIG++ L LN+G N + G IP N+ IP + L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 83/187 (44%), Gaps = 30/187 (16%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NLE L S + IP + S LQ LD+S N+L+G I L LNIS N
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIP------ 245
G +P L +L+ + L+ N+ +G +P + G L LDL N G +P
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 246 -------------------STLGRLTNLNYMSLSRNMFGGLLPQEIGNLK-NLIELNVGS 285
TL ++ L + LS N F G LP+ + NL +L+ L++ S
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 286 NSLIGPI 292
N+ GPI
Sbjct: 378 NNFSGPI 384
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPP--EISALSKLQRLDLSSNRLTGSIPSEIGN---LRNL 182
F C +L +L L+G + + + S L+ L++SSN L P ++ L +L
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSL 153
Query: 183 VYLNISKNILTGTVPSTLG-----SLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGT 237
L++S N ++G + +G LK++ +S N++SG + ++ NL LD+ +
Sbjct: 154 EVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSS 209
Query: 238 NSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSLIGPIP 293
N+ IP LG + L ++ +S N G + I L LN+ SN +GPIP
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 88 SSDHCK--WIGFTCNSAG--------SIIGLHLSRDYGSFEEPVQLSQLNFSCFPNLENL 137
++D C W+G C++ + GL+L + Y L LNF + NL
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 138 TFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP 197
G IPP I+ L++L L ++ ++G+IP + ++ LV L+ S N L+GT+P
Sbjct: 90 -------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 198 STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLM-ELDLGTNSLIGPIPSTLGRLTNLNY 256
++ SL NL + N++SG +P G+ L + + N L G IP T L NL +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 257 MSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+ LSRNM G G+ KN ++++ NSL
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPPEISALSKL-QRLDLSSNRLTGSIPSEIGNLRNLVYLN 186
S PNL +TF ++G+IP + SKL + +S NRLTG IP NL NL +++
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 187 ISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPS 246
+S+N+L G GS N + + L+ N L+ L ++G KNL LDL N + G +P
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 247 TLGRLTNLNYMSLSRNMFGGLLPQEIGNLK 276
L +L L+ +++S N G +PQ GNL+
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 219 PLPQEIGNLKNLMELDLG-TNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKN 277
P+P + NL L L +G N+L+GPIP + +LT L+Y+ ++ G +P + +K
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 278 LIELNVGSNSLIGPIPXXXXXXXXXXXXXXXCNQFSSSIPN 318
L+ L+ N+L G +P N+ S +IP+
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 196 VPSTLGSLTNLKNMGLS-YNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
+PS+L +L L + + N L GP+P I L L L + ++ G IP L ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSLIGPIP 293
+ S N G LP I +L NL+ + N + G IP
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 349 RIVYEDLIRATEDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETE--ELAFIKSF 406
R +L A+++F + +G GG+G VYK +L +G + A+K+L T+ EL F
Sbjct: 19 RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGEL----QF 74
Query: 407 RNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF-CNLHNNEEAVELDWAKRV 465
+ E +++S +HRN+++L GFC+ L+Y YM GS+ C E LDW KR
Sbjct: 75 QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQ 134
Query: 466 NIV 468
I
Sbjct: 135 RIA 137
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 349 RIVYEDLIRATEDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETE--ELAFIKSF 406
R +L A+++F + +G GG+G VYK +L +G + A+K+L + EL F
Sbjct: 27 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGEL----QF 82
Query: 407 RNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF-CNLHNNEEAVELDWAKRV 465
+ E +++S +HRN+++L GFC+ L+Y YM GS+ C E LDW KR
Sbjct: 83 QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQ 142
Query: 466 NIV 468
I
Sbjct: 143 RIA 145
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 333 RATNSIDVFSVWNY-----DGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKAQLPNGKVF 387
+ATNSI+ +Y R+ DL AT +FD ++ IG G +G VYK L +G
Sbjct: 7 KATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKV 66
Query: 388 ALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
ALK+ T E+ + E + LS H ++V L GFC R M LIY+YME G+L
Sbjct: 67 ALKR-RTPESSQGIEEFE--TEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLK 123
Query: 448 CNLHNNE-EAVELDWAKRVNI 467
+L+ ++ + + W +R+ I
Sbjct: 124 RHLYGSDLPTMSMSWEQRLEI 144
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 333 RATNSIDVFSVWNY-----DGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKAQLPNGKVF 387
+ATNSI+ +Y R+ DL AT +FD ++ IG G +G VYK L +G
Sbjct: 7 KATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKV 66
Query: 388 ALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
ALK+ T E+ + E + LS H ++V L GFC R M LIY+YME G+L
Sbjct: 67 ALKR-RTPESSQGIEEFE--TEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLK 123
Query: 448 CNLHNNE-EAVELDWAKRVNI 467
+L+ ++ + + W +R+ I
Sbjct: 124 RHLYGSDLPTMSMSWEQRLEI 144
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
++ ++ +G G +G V KA+ K A+K++ SE+E AFI R LS+V H
Sbjct: 9 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-SESERKAFIVELRQ----LSRVNHP 62
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
NIVKLYG CL+ C L+ EY EGGSL+ LH E
Sbjct: 63 NIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAE 95
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
++ ++ +G G +G V KA+ K A+K++ SE+E AFI R LS+V H
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQI-ESESERKAFIVELRQ----LSRVNHP 61
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
NIVKLYG CL+ C L+ EY EGGSL+ LH E
Sbjct: 62 NIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAE 94
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ N K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQK 101
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G ++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQK 106
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 92 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 127
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 92 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 127
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G ++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQK 106
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
EDFDI +G G +G+VY A+ K + ALK L ++ E+ R E ++ S + H
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
NI++LYG+ ++LI EY G+++ L
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 105
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
EDFDI +G G +G+VY A+ K + ALK L ++ E+ R E ++ S + H
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
NI++LYG+ ++LI EY G+++ L
Sbjct: 72 PNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 105
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DFDI +G G +G+VY A+ K + ALK L S+ E+ R E ++ S + H
Sbjct: 14 DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
NI+++Y + RK ++L+ E+ G L+ L +
Sbjct: 74 PNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH 108
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 102
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DFDI +G G +G+VY A+ K + ALK L S+ E+ R E ++ S + H
Sbjct: 15 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 74
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
NI+++Y + RK ++L+ E+ G L+ L +
Sbjct: 75 PNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH 109
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DFDI +G G +G+VY A+ K + ALK L S+ E+ R E ++ S + H
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
NI+++Y + RK ++L+ E+ G L+ L +
Sbjct: 74 PNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKH 108
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 83 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 118
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 65 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 100
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 105
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 102
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 102
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 106
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 103
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 104
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 103
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 101
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 106
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 106
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
A EDF+I +G G +G+VY A+ K + ALK L ++ E+ R E ++ S +
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H NI++LYG+ ++LI EY G+++ L
Sbjct: 63 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK 98
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+I +G G +G+VY A+ + ALK L S+ E+ R E ++ + + H
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
NI++LY + R+ ++LI EY G L+ L +
Sbjct: 83 PNILRLYNYFYDRRRIYLILEYAPRGELYKELQKS 117
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG G YG VYKAQ G+ FALKK+ + +E + R E +L ++ H NIVKLY
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHSNIVKLYDV 68
Query: 428 CLHRKCMFLIYEYME 442
+K + L++E+++
Sbjct: 69 IHTKKRLVLVFEHLD 83
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG G YG VYKAQ G+ FALKK+ + +E + R E +L ++ H NIVKLY
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHSNIVKLYDV 68
Query: 428 CLHRKCMFLIYEYME 442
+K + L++E+++
Sbjct: 69 IHTKKRLVLVFEHLD 83
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG G YG VYKAQ G+ FALKK+ + +E + R E +L ++ H NIVKLY
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIR-EISILKELKHSNIVKLYDV 68
Query: 428 CLHRKCMFLIYEYME 442
+K + L++E+++
Sbjct: 69 IHTKKRLVLVFEHLD 83
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 352 YEDLIRATEDFDIRYC------IGTGGYGSVYKAQLPNGKVFALKKLHTS---ETEELAF 402
+ +L T +FD R +G GG+G VYK + N V A+KKL TEEL
Sbjct: 11 FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELK- 68
Query: 403 IKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWA 462
+ F E +V+++ H N+V+L GF + L+Y YM GSL L + L W
Sbjct: 69 -QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 127
Query: 463 KRVNIVKA 470
R I +
Sbjct: 128 MRCKIAQG 135
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 352 YEDLIRATEDFDIRYC------IGTGGYGSVYKAQLPNGKVFALKKLHTS---ETEELAF 402
+ +L T +FD R +G GG+G VYK + N V A+KKL TEEL
Sbjct: 17 FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELK- 74
Query: 403 IKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWA 462
+ F E +V+++ H N+V+L GF + L+Y YM GSL L + L W
Sbjct: 75 -QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 463 KRVNIVKA 470
R I +
Sbjct: 134 MRCKIAQG 141
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 352 YEDLIRATEDFDIRYC------IGTGGYGSVYKAQLPNGKVFALKKLHTS---ETEELAF 402
+ +L T +FD R +G GG+G VYK + N V A+KKL TEEL
Sbjct: 17 FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELK- 74
Query: 403 IKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWA 462
+ F E +V+++ H N+V+L GF + L+Y YM GSL L + L W
Sbjct: 75 -QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 463 KRVNIVKA 470
R I +
Sbjct: 134 MRCKIAQG 141
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF I +GTG +G V+ + NG+ +A+K L L ++ +E +LS V H
Sbjct: 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 65
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
I++++G + +F+I +Y+EGG LF L ++
Sbjct: 66 PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQ 101
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG GG+G VY+A +V H + + I++ R EA++ + + H NI+ L G
Sbjct: 15 IGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + L+ E+ GG L
Sbjct: 75 CLKEPNLCLVMEFARGGPL 93
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 348 GRIVYEDLIRATEDFDIRYC-----IGTGGYGSVYKA-----QLPNGKVFALKKLHTSET 397
G + +ED R F+ R+ +G G +GSV Q G+V A+KKL S
Sbjct: 1 GAMAFED--RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTE 58
Query: 398 EELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEE 455
E L + F E ++L + H NIVK G C R+ + LI EY+ GSL L ++E
Sbjct: 59 EHL---RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKE 115
Query: 456 AVE 458
++
Sbjct: 116 RID 118
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G YG VYKA+ G++ ALK++ +E + R E +L ++ H NIV L
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR-EISLLKELHHPNIVSLIDV 87
Query: 428 CLHRKCMFLIYEYME 442
+C+ L++E+ME
Sbjct: 88 IHSERCLTLVFEFME 102
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G YG VYKA+ G++ ALK++ +E + R E +L ++ H NIV L
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIR-EISLLKELHHPNIVSLIDV 87
Query: 428 CLHRKCMFLIYEYME 442
+C+ L++E+ME
Sbjct: 88 IHSERCLTLVFEFME 102
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 34/188 (18%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTG-SIPSEIGNLRNLVYLN 186
S +L+ L+F S + P ++ L+ L+RLD+SSN+++ S+ +++ NL +L+ N
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 187 ISKNILTGTVP--------------------STLGSLTNLKNMGLSYNQLSGPLPQEIGN 226
N ++ P TL SLTNL ++ L+ NQ+S P +
Sbjct: 205 ---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSG 259
Query: 227 LKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSN 286
L L EL LG N + P L LT L + L+ N + P I NLKNL L + N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 287 SL--IGPI 292
++ I P+
Sbjct: 316 NISDISPV 323
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L +S S N L P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 275 LKNLIELNVGSNSL 288
L L L++ SN +
Sbjct: 172 LTTLERLDISSNKV 185
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 278 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 328 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 340 VFSVW-NYDGRIVYEDLIRATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKL---HT 394
VF +W Y + V + +DI +GTG +G V++ + G FA K + H
Sbjct: 136 VFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE 195
Query: 395 SETEELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF---CNLH 451
S+ E + R E Q +S + H +V L+ M +IYE+M GG LF + H
Sbjct: 196 SDKE------TVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH 249
Query: 452 N---NEEAVE 458
N +EAVE
Sbjct: 250 NKMSEDEAVE 259
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 34/188 (18%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTG-SIPSEIGNLRNLVYLN 186
S +L+ L+F S + P ++ L+ L+RLD+SSN+++ S+ +++ NL +L+ N
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 187 ISKNILTGTVP--------------------STLGSLTNLKNMGLSYNQLSGPLPQEIGN 226
N ++ P TL SLTNL ++ L+ NQ+S P +
Sbjct: 205 ---NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSG 259
Query: 227 LKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSN 286
L L EL LG N + P L LT L + L+ N + P I NLKNL L + N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 287 SL--IGPI 292
++ I P+
Sbjct: 316 NISDISPV 323
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L +S S N L P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 275 LKNLIELNVGSN 286
L L L++ SN
Sbjct: 172 LTTLERLDISSN 183
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 127 NFSCFPNLENLTFQS--FPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVY 184
+ S NL+NLT+ + F I P +S+L+KLQRL S+N++ S S + NL N+ +
Sbjct: 297 DISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKV--SDVSSLANLTNINW 353
Query: 185 LNISKNILTGTVPSTLGSLTNLKNMGL 211
L+ N ++ P L +LT + +GL
Sbjct: 354 LSAGHNQISDLTP--LANLTRITQLGL 378
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 278 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 328 KLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 340 VFSVW-NYDGRIVYEDLIRATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKL---HT 394
VF +W Y + V + +DI +GTG +G V++ + G FA K + H
Sbjct: 30 VFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE 89
Query: 395 SETEELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF---CNLH 451
S+ E + R E Q +S + H +V L+ M +IYE+M GG LF + H
Sbjct: 90 SDKE------TVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEH 143
Query: 452 NN---EEAVE 458
N +EAVE
Sbjct: 144 NKMSEDEAVE 153
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 113 DYGSFEEPVQLSQLNFSC-----FPNLENLT-FQSFPLAGSIPPEISALSKLQRLD---L 163
D + L QLNFS L NLT + ++ + +IS L+KL L+
Sbjct: 143 DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 164 SSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQE 223
++N+++ P +G L NL L+++ N L TL SLTNL ++ L+ NQ+S P
Sbjct: 203 TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 256
Query: 224 IGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNV 283
+ L L EL LG N + P L LT L + L+ N + P I NLKNL L +
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
Query: 284 GSNSL--IGPI 292
N++ I P+
Sbjct: 313 YFNNISDISPV 323
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L ++ S N L P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 275 LKNLIELNVGSNSL 288
L L L++ SN +
Sbjct: 172 LTTLERLDISSNKV 185
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 278 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 328 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN---GKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
D ++ +G G +G V+ A+ N K L + + LA K F+ EA++L+ +
Sbjct: 15 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL 74
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAVELDWAKR 464
H +IVK YG C + +++EYM+ G L F H + + +D R
Sbjct: 75 QHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPR 124
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 367 CIGTGGYGSVYKAQLP--NGKV---FALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
IG G +G VYK L +GK A+K L TE+ F EA ++ Q H NI
Sbjct: 51 VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRV--DFLGEAGIMGQFSHHNI 108
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSL 446
++L G K M +I EYME G+L
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGAL 133
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 360 EDFDIRYC-------IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQV 412
+D DI +C IG G +G+V++A+ +G A+K L + + F E +
Sbjct: 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHA-ERVNEFLREVAI 87
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+ ++ H NIV G + ++ EY+ GSL+ LH + +LD +R+++
Sbjct: 88 MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 350 IVYEDLIRATEDFDIRYC-----IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEE 399
+ +ED R F+ R+ +G G +GSV Q G+V A+KKL S E
Sbjct: 1 MAFED--RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEH 58
Query: 400 LAFIKSFRNEAQVLSQVLHRNIVKLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAV 457
L + F E ++L + H NIVK G C R+ + LI EY+ GSL L ++E +
Sbjct: 59 L---RDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI 115
Query: 458 E 458
+
Sbjct: 116 D 116
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 360 EDFDIRYC-------IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQV 412
+D DI +C IG G +G+V++A+ +G A+K L + + F E +
Sbjct: 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHA-ERVNEFLREVAI 87
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+ ++ H NIV G + ++ EY+ GSL+ LH + +LD +R+++
Sbjct: 88 MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMA 143
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 79
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 80 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 117
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 105
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 106 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 143
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 77
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 78 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 115
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 74
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 75 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 112
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 73
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 74 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 111
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 74
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 75 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 112
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 74
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 75 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 112
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 72
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 73 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 110
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 81
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 82 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 119
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 92
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 93 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 130
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 92
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 93 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 130
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 75
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L ++E ++
Sbjct: 76 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID 113
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 148 IPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLK 207
+P EI LS L+ LDLS NRLT S+P+E+G+ L Y N++T T+P G+L NL+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ 319
Query: 208 NMGLSYNQL 216
+G+ N L
Sbjct: 320 FLGVEGNPL 328
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 178 NLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGT 237
+L NL NIS NI L + L+ N L+ LP EI NL NL LDL
Sbjct: 230 DLSNLQIFNISANIFKYDF---------LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSH 279
Query: 238 NSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
N L +P+ LG L Y NM LP E GNL NL L V N L
Sbjct: 280 NRLTS-LPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G V+ N A+K + E FI+ EA+V+ ++ H +V+LYG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE----EAEVMMKLSHPKLVQLYGV 70
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + + L++E+ME G L
Sbjct: 71 CLEQAPICLVFEFMEHGCL 89
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G V+ N A+K + E FI+ EA+V+ ++ H +V+LYG
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE----EAEVMMKLSHPKLVQLYGV 68
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + + L++E+ME G L
Sbjct: 69 CLEQAPICLVFEFMEHGCL 87
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 369 GTGGYGSVYKAQLPNGKVFALKKLHTS---ETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
G GG+G VYK + N V A+KKL TEEL + F E +V ++ H N+V+L
Sbjct: 31 GEGGFGVVYKGYVNNTTV-AVKKLAAMVDITTEELK--QQFDQEIKVXAKCQHENLVELL 87
Query: 426 GFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIVKA 470
GF + L+Y Y GSL L + L W R I +
Sbjct: 88 GFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQG 132
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G V+ N A+K + E FI+ EA+V+ ++ H +V+LYG
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE----EAEVMMKLSHPKLVQLYGV 70
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + + L++E+ME G L
Sbjct: 71 CLEQAPICLVFEFMEHGCL 89
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G V+ N A+K + E FI+ EA+V+ ++ H +V+LYG
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE----EAEVMMKLSHPKLVQLYGV 73
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + + L++E+ME G L
Sbjct: 74 CLEQAPICLVFEFMEHGCL 92
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 113 DYGSFEEPVQLSQLNF----SCFPNLENLT-FQSFPLAGSIPPEISALSKLQRLD---LS 164
D + L QLNF + L NLT + ++ + +IS L+KL L+ +
Sbjct: 143 DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 202
Query: 165 SNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI 224
+N+++ P +G L NL L+++ N L TL SLTNL ++ L+ NQ+S P +
Sbjct: 203 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 256
Query: 225 GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVG 284
L L EL LG N + P L LT L + L+ N + P I NLKNL L +
Sbjct: 257 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 312
Query: 285 SNSL--IGPI 292
N++ I P+
Sbjct: 313 FNNISDISPV 322
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L ++ N L P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFG-NQVTDLKP--LAN 170
Query: 275 LKNLIELNVGSNSL 288
L L L++ SN +
Sbjct: 171 LTTLERLDISSNKV 184
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 277 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 327 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
ED+++ Y IGTG YG K + +GK+ K+L E A + +E +L ++
Sbjct: 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELK 63
Query: 418 HRNIVKLYGFCLHR--KCMFLIYEYMEGGSL 446
H NIV+ Y + R ++++ EY EGG L
Sbjct: 64 HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDL 94
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
ED+++ Y IGTG YG K + +GK+ K+L E A + +E +L ++ H
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELKH 64
Query: 419 RNIVKLYGFCLHR--KCMFLIYEYMEGGSL 446
NIV+ Y + R ++++ EY EGG L
Sbjct: 65 PNIVRYYDRIIDRTNTTLYIVMEYCEGGDL 94
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
ED+++ Y IGTG YG K + +GK+ K+L E A + +E +L ++
Sbjct: 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTE-AEKQMLVSEVNLLRELK 63
Query: 418 HRNIVKLYGFCLHR--KCMFLIYEYMEGGSL 446
H NIV+ Y + R ++++ EY EGG L
Sbjct: 64 HPNIVRYYDRIIDRTNTTLYIVMEYCEGGDL 94
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 113 DYGSFEEPVQLSQLNF----SCFPNLENLT-FQSFPLAGSIPPEISALSKLQRLD---LS 164
D + L QLNF + L NLT + ++ + +IS L+KL L+ +
Sbjct: 143 DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 202
Query: 165 SNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI 224
+N+++ P +G L NL L+++ N L TL SLTNL ++ L+ NQ+S P +
Sbjct: 203 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 256
Query: 225 GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVG 284
L L EL LG N + P L LT L + L+ N + P I NLKNL L +
Sbjct: 257 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 312
Query: 285 SNSL--IGPI 292
N++ I P+
Sbjct: 313 FNNISDISPV 322
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L ++ N L P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFG-NQVTDLKP--LAN 170
Query: 275 LKNLIELNVGSNSL 288
L L L++ SN +
Sbjct: 171 LTTLERLDISSNKV 184
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 127 NFSCFPNLENLTFQS--FPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVY 184
+ S NL+NLT+ + F I P +S+L+KLQRL S+N++ S S + NL N+ +
Sbjct: 296 DISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKV--SDVSSLANLTNINW 352
Query: 185 LNISKNILTGTVPSTLGSLTNLKNMGLS 212
L+ N ++ P L +LT + +GL+
Sbjct: 353 LSAGHNQISDLTP--LANLTRITQLGLN 378
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 277 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 327 KLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 127 NFSCFPNLENLTFQSFPLAG----SIPPEI-SALSKLQRLDLSSNRLTGSIPSEI-GNLR 180
+ S L NLT+ L G S+P + L+ L+ L L N+L S+P + L
Sbjct: 77 DISALKELTNLTY--LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT 133
Query: 181 NLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNS 239
NL YLN++ N L LTNL + LSYNQL LP+ + L L +L L N
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ 192
Query: 240 LIGPIPSTLGRLTNLNYMSLSRNMFGGLLP 269
L RLT+L Y+ L N + P
Sbjct: 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGL 211
I L ++ L L N+L S + L NL YL ++ N L LTNLK + L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 212 SYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
NQL LP + L NL L+L N L +LTNL + LS N L
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 271 EIGNLKNLIELNVGSNSL 288
L L +L + N L
Sbjct: 176 VFDKLTQLKDLRLYQNQL 193
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETE 398
YED + +F I +G G +G V + +LP+ K A+K L TE
Sbjct: 28 YEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEA 456
+ + F EA ++ Q H NI++L G K + ++ EYME GSL F H+ +
Sbjct: 88 KQR--RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145
Query: 457 V 457
V
Sbjct: 146 V 146
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETE 398
YED + +F I +G G +G V + +LP+ K A+K L TE
Sbjct: 28 YEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEA 456
+ + F EA ++ Q H NI++L G K + ++ EYME GSL F H+ +
Sbjct: 88 KQR--RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145
Query: 457 V 457
V
Sbjct: 146 V 146
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G V+ N A+K + E FI+ EA+V+ ++ H +V+LYG
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSEDDFIE----EAEVMMKLSHPKLVQLYGV 90
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + + L++E+ME G L
Sbjct: 91 CLEQAPICLVFEFMEHGCL 109
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETE 398
YED + +F I +G G +G V + +LP+ K A+K L TE
Sbjct: 26 YEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 85
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEA 456
+ + F EA ++ Q H NI++L G K + ++ EYME GSL F H+ +
Sbjct: 86 KQR--RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 143
Query: 457 V 457
V
Sbjct: 144 V 144
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETE 398
YED +A +F I IG G +G V + +LP + A+K L TE
Sbjct: 5 YEDPNQAVHEFAKEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTE 64
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ + F EA ++ Q H NI+ L G K + ++ EYME GSL L N+
Sbjct: 65 KQR--RDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKND 118
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 77
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI EY+ GSL L + E ++
Sbjct: 78 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERID 115
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ----LP--NGKVFALKKLHTSETEELAFIKSFRNEAQVL 413
D +++ +G G +G V+ A+ LP + + A+K L E E A + F+ EA++L
Sbjct: 12 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL--KEASESAR-QDFQREAELL 68
Query: 414 SQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+ + H++IV+ +G C + + +++EYM G L
Sbjct: 69 TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 101
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ----LP--NGKVFALKKLHTSETEELAFIKSFRNEAQVL 413
D +++ +G G +G V+ A+ LP + + A+K L E E A + F+ EA++L
Sbjct: 18 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL--KEASESAR-QDFQREAELL 74
Query: 414 SQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+ + H++IV+ +G C + + +++EYM G L
Sbjct: 75 TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 107
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 368 IGTGGYGSVYKA-----QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +GSV Q G+V A+KKL S E L + F E ++L + H NIV
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHL---RDFEREIEILKSLQHDNIV 77
Query: 423 KLYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
K G C R+ + LI E++ GSL L ++E ++
Sbjct: 78 KYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERID 115
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKL----HTSETEELAFIKSFRNEAQV 412
A + + IG GG+G V+K +L K V A+K L ETE + + F+ E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+S + H NIVKLYG + M + E++ G L+ L + +A + W+ ++ ++
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLM 128
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ----LP--NGKVFALKKLHTSETEELAFIKSFRNEAQVL 413
D +++ +G G +G V+ A+ LP + + A+K L E E A + F+ EA++L
Sbjct: 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKAL--KEASESAR-QDFQREAELL 97
Query: 414 SQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+ + H++IV+ +G C + + +++EYM G L
Sbjct: 98 TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDL 130
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ----LPNGKVFALKKLHTS----ETEELAFIKSFRNEAQ 411
E F++ +G GGYG V++ + GK+FA+K L + ++ A K+ RN
Sbjct: 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERN--- 73
Query: 412 VLSQVLHRNIVKL-YGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
+L +V H IV L Y F K ++LI EY+ GG LF L
Sbjct: 74 ILEEVKHPFIVDLIYAFQTGGK-LYLILEYLSGGELFMQLERE 115
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ----LPNGKVFALKKLHTS----ETEELAFIKSFRNEAQ 411
E F++ +G GGYG V++ + GK+FA+K L + ++ A K+ RN
Sbjct: 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERN--- 73
Query: 412 VLSQVLHRNIVKL-YGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
+L +V H IV L Y F K ++LI EY+ GG LF L
Sbjct: 74 ILEEVKHPFIVDLIYAFQTGGK-LYLILEYLSGGELFMQLERE 115
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 37 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 94
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 95 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 134
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 20 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 77
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 78 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 117
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKL----HTSETEELAFIKSFRNEAQV 412
A + + IG GG+G V+K +L K V A+K L ETE + + F+ E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+S + H NIVKLYG + M + E++ G L+ L + +A + W+ ++ ++
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLM 128
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 106
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 146
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-VFALKKL----HTSETEELAFIKSFRNEAQV 412
A + + IG GG+G V+K +L K V A+K L ETE + + F+ E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+S + H NIVKLYG + M + E++ G L+ L + +A + W+ ++ ++
Sbjct: 77 MSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLM 128
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 106
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 146
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 106
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 146
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 106
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 146
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 106
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ EYME GSL F H+ + V
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV 146
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
ED + IG G +G V+ +L + + A+K + +L F EA++L Q H
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLK--AKFLQEARILKQYSH 171
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
NIV+L G C ++ ++++ E ++GG L
Sbjct: 172 PNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE 206
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 32/164 (19%)
Query: 152 ISALSKLQRLDLSSNRLTG-SIPSEIGNLRNLVYLNISKNILTGTVP------------- 197
++ L+ L+RLD+SSN+++ S+ +++ NL +L+ N N ++ P
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLGILTNLDELSLN 229
Query: 198 -------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGR 250
TL SLTNL ++ L+ NQ+S P + L L EL LG N + P L
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285
Query: 251 LTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL--IGPI 292
LT L + L+ N + P I NLKNL L + N++ I P+
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 327
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L +S N L P + N
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFG-NQVTDLKP--LAN 175
Query: 275 LKNLIELNVGSNSL 288
L L L++ SN +
Sbjct: 176 LTTLERLDISSNKV 189
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 282 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 331
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 332 KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
ED + IG G +G V+ +L + + A+K + +L F EA++L Q H
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLK--AKFLQEARILKQYSH 171
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
NIV+L G C ++ ++++ E ++GG L
Sbjct: 172 PNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE 206
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
+D S R S+P+ I ++YL+ N +T P SL NLK + L NQL G L
Sbjct: 24 VDCRSKR-HASVPAGIPTNAQILYLH--DNQITKLEPGVFDSLINLKELYLGSNQL-GAL 79
Query: 221 PQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLI 279
P + +L L LDLGTN L + RL +L + + N LP+ I L +L
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLT 138
Query: 280 ELNVGSNSL 288
L + N L
Sbjct: 139 HLALDQNQL 147
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 146 GSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I + Q L L N++T P +L NL L + N L SLT
Sbjct: 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 206 LKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
L + L NQL+ LP + L +L EL + N L +P + RLT+L +++L +N
Sbjct: 90 LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Query: 265 GGL 267
+
Sbjct: 148 KSI 150
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPPEI-SALSKLQRLDLSSNRLTGSIPSEI-GNLRNLVYL 185
F NL+ L S L G++P + +L++L LDL +N+LT +PS + L +L L
Sbjct: 60 FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117
Query: 186 NISKNILTGTVPSTLGSLTNLKNMGLSYNQL 216
+ N LT +P + LT+L ++ L NQL
Sbjct: 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G V+ N A+K + E FI+ EA+V+ ++ H +V+LYG
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIE----EAEVMMKLSHPKLVQLYGV 71
Query: 428 CLHRKCMFLIYEYMEGGSL 446
CL + + L+ E+ME G L
Sbjct: 72 CLEQAPICLVTEFMEHGCL 90
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 221 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 277
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 278 LVQLLGVCTREPPFYIITEFMTYGNLL 304
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 32/164 (19%)
Query: 152 ISALSKLQRLDLSSNRLTG-SIPSEIGNLRNLVYLNISKNILTGTVP------------- 197
++ L+ L+RLD+SSN+++ S+ +++ NL +L+ N N ++ P
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITPLGILTNLDELSLN 228
Query: 198 -------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGR 250
TL SLTNL ++ L+ NQ+S P + L L EL LG N + P L
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 284
Query: 251 LTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL--IGPI 292
LT L + L+ N + P I NLKNL L + N++ I P+
Sbjct: 285 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 326
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L +++ S+N+LT P + NL LV + ++ N + P L +LTNL + L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + NL NL L+L +N+ I I S L LT+L +S N L P + N
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFG-NQVTDLKP--LAN 174
Query: 275 LKNLIELNVGSNSL 288
L L L++ SN +
Sbjct: 175 LTTLERLDISSNKV 188
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 143 PLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP----- 197
PLAG L+ L L+L+ N+L P I NL+NL YL + N ++ P
Sbjct: 281 PLAG--------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 330
Query: 198 ---------------STLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDL 235
S+L +LTN+ + +NQ+S P + NL + +L L
Sbjct: 331 KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 381
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 218 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 274
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 275 LVQLLGVCTREPPFYIITEFMTYGNLL 301
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
IG+G +G+VYK + +G V A+K L + F ++FRNE VL + H NI+ G+
Sbjct: 44 IGSGSFGTVYKGKW-HGDV-AVKILKVVDPTPEQF-QAFRNEVAVLRKTRHVNILLFMGY 100
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E ++
Sbjct: 101 -MTKDNLAIVTQWCEGSSLYKHLHVQETKFQM 131
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 260 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 316
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 317 LVQLLGVCTREPPFYIITEFMTYGNLL 343
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 19 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 75
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 76 LVQLLGVCTREPPFYIIIEFMTYGNLL 102
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 15 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 71
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 72 LVQLLGVCTREPPFYIIIEFMTYGNLL 98
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 15 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 71
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
+V+L G C ++I E+M G+L L
Sbjct: 72 LVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 103
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 12 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 68
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 69 LVQLLGVCTREPPFYIIIEFMTYGNLL 95
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 19 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 75
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 76 LVQLLGVCTREPPFYIITEFMTYGNLL 102
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 19 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 75
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
+V+L G C ++I E+M G+L L
Sbjct: 76 LVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 107
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 19 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 75
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 76 LVQLLGVCTREPPFYIITEFMTYGNLL 102
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 20 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 75
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH +E E+
Sbjct: 76 YST-KPQLAIVTQWCEGSSLYHHLHASETKFEM 107
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 16 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 72
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 73 LVQLLGVCTREPPFYIITEFMTYGNLL 99
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 19 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 75
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 76 LVQLLGVCTREPPFYIITEFMTYGNLL 102
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETE 398
+ED +A +F I IG G +G V +L P + A+K L T+
Sbjct: 12 FEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTD 71
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ + F +EA ++ Q H NI+ L G K + +I EYME GSL L N+
Sbjct: 72 KQR--RDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKND 125
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 32 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 87
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH +E E+
Sbjct: 88 YST-KPQLAIVTQWCEGSSLYHHLHASETKFEM 119
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 18 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 74
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 75 LVQLLGVCTREPPFYIITEFMTYGNLL 101
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPN-----GKVF-ALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
+G G +G V+ A+ N K+ A+K L + K F EA++L+ + H +I
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNAR---KDFHREAELLTNLQHEHI 77
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSL 446
VK YG C+ + +++EYM+ G L
Sbjct: 78 VKFYGVCVEGDPLIMVFEYMKHGDL 102
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 14 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 70
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 71 LVQLLGVCTREPPFYIIIEFMTYGNLL 97
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 14 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 70
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 71 LVQLLGVCTREPPFYIIIEFMTYGNLL 97
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 12 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 68
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
+V+L G C ++I E+M G+L L
Sbjct: 69 LVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 100
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 87
Query: 428 CLHRKCMFLIYEYMEGGSLF 447
C ++ +F+I EYM G L
Sbjct: 88 CTKQRPIFIITEYMANGCLL 107
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 16 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 72
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 73 LVQLLGVCTREPPFYIITEFMTYGNLL 99
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 368 IGTGGYGSVYKAQLPN------GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
IG G +G V++A+ P + A+K L + ++ F+ EA ++++ + NI
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQ--ADFQREAALMAEFDNPNI 112
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSL 446
VKL G C K M L++EYM G L
Sbjct: 113 VKLLGVCAVGKPMCLLFEYMAYGDL 137
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSE----IGNLRNLVYLNISKNILTGTVPSTL-G 201
+IP I A +K +LDL SN+L+ S+PS+ + LR L+YLN +K T+P+ +
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLS-SLPSKAFHRLTKLR-LLYLNDNK---LQTLPAGIFK 82
Query: 202 SLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSR 261
L NL+ + ++ N+L L NL EL L N L P LT L Y+SL
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 262 NMFGGLLPQEIGNLKNLIELNVGSNSL 288
N L L +L EL + +N L
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQL 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 2/155 (1%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEI-GNLRNLVYLNISKNILT 193
+ L QS L+ L+KL+ L L+ N+L ++P+ I L+NL L ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 194 GTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTN 253
L NL + L NQL P+ +L L L LG N L +LT+
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 254 LNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
L + L N + L L L + +N L
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L L+ L ++ N+L L NL L + +N L P SLT L + L YN
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 215 QLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIG 273
+L LP+ + L +L EL L N L +LT L + L N +
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 274 NLKNLIELNVGSN 286
+L+ L L + N
Sbjct: 203 SLEKLKMLQLQEN 215
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 14 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 70
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 71 LVQLLGVCTREPPFYIITEFMTYGNLL 97
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 14 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 70
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 71 LVQLLGVCTREPPFYIITEFMTYGNLL 97
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 87
Query: 428 CLHRKCMFLIYEYMEGGSLF 447
C ++ +F+I EYM G L
Sbjct: 88 CTKQRPIFIITEYMANGCLL 107
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 14 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 70
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 71 LVQLLGVCTREPPFYIITEFMTYGNLL 97
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 14 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 70
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 71 LVQLLGVCTREPPFYIITEFMTYGNLL 97
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 16 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 72
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 73 LVQLLGVCTREPPFYIITEFMTYGNLL 99
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 27 DITMKHKLGGGQYGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 83
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+L G C ++I E+M G+L
Sbjct: 84 LVQLLGVCTREPPFYIITEFMTYGNLL 110
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 364 IRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I IG G +G V +L P + A+K L T++ + F +EA ++ Q H
Sbjct: 12 IEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQR--RDFLSEASIMGQFDHP 69
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
NI+ L G K + +I EYME GSL L N+
Sbjct: 70 NIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKND 104
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 71
Query: 428 CLHRKCMFLIYEYMEGGSL 446
C ++ +F+I EYM G L
Sbjct: 72 CTKQRPIFIITEYMANGCL 90
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 72
Query: 428 CLHRKCMFLIYEYMEGGSL 446
C ++ +F+I EYM G L
Sbjct: 73 CTKQRPIFIITEYMANGCL 91
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 72
Query: 428 CLHRKCMFLIYEYMEGGSL 446
C ++ +F+I EYM G L
Sbjct: 73 CTKQRPIFIITEYMANGCL 91
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 78
Query: 428 CLHRKCMFLIYEYMEGGSL 446
C ++ +F+I EYM G L
Sbjct: 79 CTKQRPIFIITEYMANGCL 97
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GTG +G V + A+K + E FI+ EA+V+ + H +V+LYG
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIE----EAKVMMNLSHEKLVQLYGV 67
Query: 428 CLHRKCMFLIYEYMEGGSL 446
C ++ +F+I EYM G L
Sbjct: 68 CTKQRPIFIITEYMANGCL 86
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 364 IRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I IG G +G V +L P + A+K L T++ + F +EA ++ Q H
Sbjct: 18 IEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQR--RDFLSEASIMGQFDHP 75
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
NI+ L G K + +I EYME GSL L N+
Sbjct: 76 NIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKND 110
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETE 398
YED + +F I +G G +G V + +LP+ K A+K L TE
Sbjct: 28 YEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTE 87
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEA 456
+ + F EA ++ Q H NI++L G K + ++ E ME GSL F H+ +
Sbjct: 88 KQR--RDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFT 145
Query: 457 V 457
V
Sbjct: 146 V 146
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
EDF+I IG G +G V +L N KVFA+K L+ E + A FR E VL
Sbjct: 74 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDS 133
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
+ I L+ ++L+ +Y GG L L E+ + + A+
Sbjct: 134 KWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMAR 178
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G YG VY K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 33 DITMKHKLGGGQYGEVYVGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 89
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLH--NNEE 455
+V+L G C +++ EYM G+L L N EE
Sbjct: 90 LVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREE 126
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 352 YEDLIRA--TEDF-DIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRN 408
YE + R EDF +I +G G +G VYKAQ V A K+ +++EE ++ +
Sbjct: 26 YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE--LEDYMV 83
Query: 409 EAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
E +L+ H NIVKL + ++++ E+ GG++
Sbjct: 84 EIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 121
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 352 YEDLIRA--TEDF-DIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRN 408
YE + R EDF +I +G G +G VYKAQ V A K+ +++EE ++ +
Sbjct: 26 YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE--LEDYMV 83
Query: 409 EAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
E +L+ H NIVKL + ++++ E+ GG++
Sbjct: 84 EIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 121
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 352 YEDLIRA--TEDF-DIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRN 408
YE + R EDF +I +G G +G VYKAQ V A K+ +++EE ++ +
Sbjct: 26 YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEE--LEDYMV 83
Query: 409 EAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
E +L+ H NIVKL + ++++ E+ GG++
Sbjct: 84 EIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 121
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 32 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 87
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH +E E+
Sbjct: 88 YSTAPQ-LAIVTQWCEGSSLYHHLHASETKFEM 119
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVY--KAQLPNGK--VFALKKLHTSETE 398
YED RA F I IG G +G V + +LP + A+K L TE
Sbjct: 26 YEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTE 85
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNE 454
+ + F EA ++ Q H N+V L G K + ++ E+ME G+L F H+ +
Sbjct: 86 KQR--RDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQ 141
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
E + I +G GG +VY A+ + N KV A+K + E+ +K F E SQ+
Sbjct: 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKV-AIKAIFIPPREKEETLKRFEREVHNSSQLS 69
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
H+NIV + C +L+ EY+EG +L
Sbjct: 70 HQNIVSMIDVDEEDDCYYLVMEYIEGPTL 98
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
S+P I A ++LDL S L + L L +LN+ N L LT L
Sbjct: 28 SVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELD---LGTNSLIGPIPSTLGRLTNLNYMSLSRNM 263
+GL+ NQL+ LP +G +L +LD LG N L RLT L + L+ N
Sbjct: 86 GTLGLANNQLA-SLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 264 FGGLLPQEIGNLKNLIELNVGSNSL 288
+ L NL L++ +N L
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
+ E L QS LA L+KL L+L N+L +L L L ++ N L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRL 251
LT L + L NQL LP + L L EL L TN L +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 252 TNLNYMSLSRNMF 264
TNL +SLS N
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEI-GNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSY 213
L++L L L++N+L S+P + +L L L + N L LT LK + L+
Sbjct: 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 214 NQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
NQL L NL L L TN L RL L ++L N F
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 364 IRYCIGTGGYGSVYKA--QLPNGK--VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I IG G +G V +LP + A+K L + TE+ + F +EA ++ Q H
Sbjct: 37 IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQR--RDFLSEASIMGQFDHP 94
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
N++ L G + +I E+ME GSL L N+
Sbjct: 95 NVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND 129
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
S+P I A ++LDL S L + L L +LN+ N L LT L
Sbjct: 28 SVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELD---LGTNSLIGPIPSTLGRLTNLNYMSLSRNM 263
+GL+ NQL+ LP +G +L +LD LG N L RLT L + L+ N
Sbjct: 86 GTLGLANNQLA-SLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142
Query: 264 FGGLLPQEIGNLKNLIELNVGSNSL 288
+ L NL L++ +N L
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
+ E L QS LA L+KL L+L N+L +L L L ++ N L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRL 251
LT L + L NQL LP + L L EL L TN L +L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 252 TNLNYMSLSRNMF 264
TNL +SLS N
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEI-GNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSY 213
L++L L L++N+L S+P + +L L L + N L LT LK + L+
Sbjct: 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 214 NQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
NQL L NL L L TN L RL L ++L N F
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G YG VYKA + A+K++ EE + R E +L ++ HRNI++L
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIR-EVSLLKELQHRNIIELKS 100
Query: 427 FCLHRKCMFLIYEYME 442
H + LI+EY E
Sbjct: 101 VIHHNHRLHLIFEYAE 116
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 20 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 77
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ E ME GSL F H+ + V
Sbjct: 78 NIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTV 117
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 364 IRYCIGTGGYGSVY--KAQLPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I +G G +G V + +LP+ K A+K L TE+ + F EA ++ Q H
Sbjct: 49 IDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQFDHP 106
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNEEAV 457
NI++L G K + ++ E ME GSL F H+ + V
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTV 146
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 364 IRYCIGTGGYGSVYKA--QLPNGK--VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I IG G +G V +LP + A+K L + TE+ + F +EA ++ Q H
Sbjct: 11 IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQR--RDFLSEASIMGQFDHP 68
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
N++ L G + +I E+ME GSL L N+
Sbjct: 69 NVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND 103
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
D +++ +G G +G VY+ K ++L + E+ ++ F EA V+ ++ H N
Sbjct: 12 DITMKHKLGGGQFGEVYEGVW---KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 68
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
+V+L G C ++I E+M G+L L
Sbjct: 69 LVQLLGVCTREPPFYIITEFMTYGNLLDYLRE 100
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETE 398
YE+ RA F I IG+G G V +L P + A+K L TE
Sbjct: 32 YEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTE 91
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNE 454
+ F +EA ++ Q H NI++L G + ++ EYME GSL F H+ +
Sbjct: 92 RQR--RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ 147
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 21 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 76
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 77 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 108
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 21 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 76
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 77 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 108
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 362 FDIRY----CIGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQ 415
F RY +G G +G V K ++ G+ A+K + + ++ +S E Q+L Q
Sbjct: 47 FSDRYKGQRVLGKGSFGEVILCKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQ 105
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+ H NI+KLY F + +L+ E GG LF + + + E+D A+ + V
Sbjct: 106 LDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQV 158
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 16 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 71
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 72 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 103
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 18 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 73
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 74 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 105
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 362 FDIRY----CIGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQ 415
F RY +G G +G V K ++ G+ A+K + + ++ +S E Q+L Q
Sbjct: 48 FSDRYKGQRVLGKGSFGEVILCKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQ 106
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+ H NI+KLY F + +L+ E GG LF + + + E+D A+ + V
Sbjct: 107 LDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQV 159
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 362 FDIRY----CIGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQ 415
F RY +G G +G V K ++ G+ A+K + + ++ +S E Q+L Q
Sbjct: 24 FSDRYKGQRVLGKGSFGEVILCKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQ 82
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+ H NI+KLY F + +L+ E GG LF + + + E+D A+ + V
Sbjct: 83 LDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQV 135
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 16 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 71
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 72 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 103
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 352 YEDLIRATEDF---------DIRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETE 398
YE+ RA F I IG+G G V +L P + A+K L TE
Sbjct: 32 YEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTE 91
Query: 399 ELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL--FCNLHNNE 454
+ F +EA ++ Q H NI++L G + ++ EYME GSL F H+ +
Sbjct: 92 RQR--RDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQ 147
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 44 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 99
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 100 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 131
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 43 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 98
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 99 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 130
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 36 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 91
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 92 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 123
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 44 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 99
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 100 YST-KPQLAIVTQWCEGSSLYHHLHIIETKFEM 131
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S++ H+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKLNHQ 94
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 95 NIVRCIGVSLQSLPRFILLELMAGGDL 121
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S++ H+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKLNHQ 108
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 109 NIVRCIGVSLQSLPRFILLELMAGGDL 135
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 364 IRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I IG G +G V + +L P K A+K L TE + F +EA ++ Q H
Sbjct: 20 IEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQR--REFLSEASIMGQFEHP 77
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
NI++L G + + ++ E+ME G+L L N+
Sbjct: 78 NIIRLEGVVTNSMPVMILTEFMENGALDSFLRLND 112
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 352 YEDLIRATEDFDIRYCIGT-GGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEA 410
YE + R D IG G +G VYKAQ V A K+ +++EE ++ + E
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDFGKVYKAQNKETSVLAAAKVIDTKSEEE--LEDYMVEI 58
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+L+ H NIVKL + ++++ E+ GG++
Sbjct: 59 DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAV 94
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 358 ATEDFDIRY----CIGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQ 411
+T F RY +G G +G V K ++ G+ A+K + + ++ +S E Q
Sbjct: 26 STAIFSDRYKGQRVLGKGSFGEVILCKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQ 84
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+L Q+ H NI+KLY F + +L+ E GG LF + + + E+D A+ + V
Sbjct: 85 LLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQV 141
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 364 IRYCIGTGGYGSVYKAQL--PNGK--VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
I IG G +G V + +L P K A+K L TE + F +EA ++ Q H
Sbjct: 18 IEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQR--REFLSEASIMGQFEHP 75
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
NI++L G + + ++ E+ME G+L L N+
Sbjct: 76 NIIRLEGVVTNSMPVMILTEFMENGALDSFLRLND 110
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 131 FPNLENLTFQSFPLAGSIPPEISA-------------LSKLQRLDLSSNRLTGSIPSEIG 177
F + +N TF+ +G ++S + L++L L+ N + +
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 178 NLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGT 237
L +L+ LN+S+N L +L L+ + LSYN + Q L NL EL L T
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 238 NSLIGPIPSTLGRLTNLNYMSLSRN 262
N L RLT+L + L N
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKV-FALKKLHTSETEE----------LAFIKSFRNEA 410
F +R +G+G YG V + NG A+K + S+ ++ F + NE
Sbjct: 39 FKVRK-LGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEI 97
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIVKA 470
+L + H NI+KL+ +K +L+ E+ EGG LF + N + E D A NI+K
Sbjct: 98 SLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAA---NIMKQ 154
Query: 471 M 471
+
Sbjct: 155 I 155
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 356 IRATEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLS 414
+R DF+ +G G +G V KA+ + + +A+KK+ +E E+L+ I S E +L+
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILS---EVMLLA 57
Query: 415 QVLHRNIVKLYGFCLHRK-------------CMFLIYEYMEGGSLFCNLHN 452
+ H+ +V+ Y L R+ +F+ EY E G+L+ +H+
Sbjct: 58 SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHS 108
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLH-TSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG+G +G+VYK + +G V A+K L+ T+ T + +++F+NE VL + H NI+ G
Sbjct: 16 IGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 71
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
+ + + ++ ++ EG SL+ +LH E E+
Sbjct: 72 YSTAPQ-LAIVTQWCEGSSLYHHLHIIETKFEM 103
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GT G V K +L KV A+K L+ + L + R E Q L H +I+KLY
Sbjct: 26 VGTFGKVKVGKHELTGHKV-AVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQV 84
Query: 428 CLHRKCMFLIYEYMEGGSLF 447
+F++ EY+ GG LF
Sbjct: 85 ISTPSDIFMVMEYVSGGELF 104
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ N A+K L +++F EA ++ + H +V+LY
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS----VQAFLEEANLMKTLQHDKLVRLYAV 76
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ +++I EYM GSL L ++E
Sbjct: 77 VTREEPIYIITEYMAKGSLLDFLKSDE 103
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 94
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 95 NIVRCIGVSLQSLPRFILLELMAGGDL 121
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 368 IGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G YG V K + + G++ A+KK S+ +++ + R E ++L Q+ H N+V L
Sbjct: 33 VGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMR-EIKLLKQLRHENLVNLLE 91
Query: 427 FCLHRKCMFLIYEYME 442
C +K +L++E+++
Sbjct: 92 VCKKKKRWYLVFEFVD 107
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 94
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 95 NIVRCIGVSLQSLPRFILLELMAGGDL 121
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLH--TSETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 93
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 94 NIVRCIGVSLQSLPRFILMELMAGGDL 120
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 362 FDIRY----CIGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQ 415
F RY +G G +G V K ++ G+ A+K + + ++ +S E Q+L Q
Sbjct: 24 FSDRYKGQRVLGKGSFGEVILCKDKI-TGQECAVKVISKRQVKQKTDKESLLREVQLLKQ 82
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
+ H NI KLY F + +L+ E GG LF + + + E+D A+ + V
Sbjct: 83 LDHPNIXKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQV 135
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 108
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 109 NIVRCIGVSLQSLPRFILMELMAGGDL 135
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLH--TSETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 30 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 85
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 86 NIVRCIGVSLQSLPRFILLELMAGGDL 112
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLH--TSETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 93
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 94 NIVRCIGVSLQSLPRFILLELMAGGDL 120
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 45 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 100
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 101 NIVRCIGVSLQSLPRFILLELMAGGDL 127
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLM----EALIISKFNHQ 108
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 109 NIVRCIGVSLQSLPRFILLELMAGGDL 135
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 134
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 135 NIVRCIGVSLQSLPRFILLELMAGGDL 161
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 55 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 110
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 111 NIVRCIGVSLQSLPRFILLELMAGGDL 137
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 56 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 111
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 112 NIVRCIGVSLQSLPRFILLELMAGGDL 138
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 368 IGTGGYGSVYKAQL------PNGKVFALKKLHT--SETEELAFIKSFRNEAQVLSQVLHR 419
+G G +G VY+ Q+ P+ A+K L SE +EL F+ EA ++S+ H+
Sbjct: 65 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM----EALIISKFNHQ 120
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
NIV+ G L F++ E M GG L
Sbjct: 121 NIVRCIGVSLQSLPRFILLELMAGGDL 147
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 368 IGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G +G V+K + G A K + T ++ +K NE V++Q+ H N+++LY
Sbjct: 97 LGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVK---NEISVMNQLDHANLIQLYD 153
Query: 427 FCLHRKCMFLIYEYMEGGSLF 447
+ + L+ EY++GG LF
Sbjct: 154 AFESKNDIVLVMEYVDGGELF 174
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 368 IGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
+G+G YG V K +L G A+K + S + + +E VL Q+ H NI+KLY
Sbjct: 29 LGSGAYGEVLLCKDKL-TGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPNIMKLY 87
Query: 426 GFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWA 462
F ++ +L+ E GG LF + ++ E+D A
Sbjct: 88 EFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAA 124
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 359 TEDFDIRYCIGTGGYGSV----YKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ IG G +G V +KA + KV+A+K L E + + F E +++
Sbjct: 74 AEDYDVVKVIGRGAFGEVQLVRHKA---SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 130
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
+V+L+ K ++++ EYM GG L NL +N + E WAK
Sbjct: 131 FANSPWVVQLFCAFQDDKYLYMVMEYMPGGDL-VNLMSNYDVPE-KWAK 177
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G +G VYKA+ G + A K + T EEL + + E ++L+ H IVKL G
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL---EDYIVEIEILATCDHPYIVKLLG 75
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
H ++++ E+ GG++
Sbjct: 76 AYYHDGKLWIMIEFCPGGAV 95
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
EDF+I IG G +G V ++ N +++A+K L+ E + A FR E VL
Sbjct: 90 EDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDC 149
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
+ I L+ ++L+ +Y GG L L E+ + D A+
Sbjct: 150 QWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMAR 194
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
EDF+I IG G +G V ++ N +++A+K L+ E + A FR E VL
Sbjct: 74 EDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILNKWEMLKRAETACFREERDVLVNGDC 133
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
+ I L+ ++L+ +Y GG L L E+ + D A+
Sbjct: 134 QWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMAR 178
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++++D++ +G G + V + G FA K ++T + F K EA++ ++
Sbjct: 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK-LEREARICRKLQ 86
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 87 HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD 129
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 368 IGTGGYGSVY--KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
+G+G YG V K +L G A+K + S + + +E VL Q+ H NI+KLY
Sbjct: 12 LGSGAYGEVLLCKDKL-TGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPNIMKLY 70
Query: 426 GFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWA 462
F ++ +L+ E GG LF + ++ E+D A
Sbjct: 71 EFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAA 107
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 360 EDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E FD+ +G G YGSVYKA G++ A+K++ E++ IK E ++ Q
Sbjct: 29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV-ESDLQEIIK----EISIMQQCDS 83
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
++VK YG ++++ EY GS+
Sbjct: 84 PHVVKYYGSYFKNTDLWIVMEYCGAGSV 111
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G +G VYKA+ G + A K + T EEL + + E ++L+ H IVKL G
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEEL---EDYIVEIEILATCDHPYIVKLLG 83
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
H ++++ E+ GG++
Sbjct: 84 AYYHDGKLWIMIEFCPGGAV 103
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGN-LRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSY 213
L+ L +L L N+L S+P+ + N L +L YLN+S N L LT LK + L+
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109
Query: 214 NQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLP 269
NQL LP + L L +L L N L RLT+L Y+ L N + P
Sbjct: 110 NQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEI-GNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I A + LDL +N L S+P+ + L +L L + N L LT+
Sbjct: 21 SVPTGIPA--QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 206 LKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
L + LS NQL LP + L L EL L TN L +LT L + L +N
Sbjct: 78 LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 171 SIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKN 229
S+P+ I YL++ N L LT+L + L N+L LP + N L +
Sbjct: 21 SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTS 77
Query: 230 LMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
L L+L TN L +LT L ++L+ N L L L +L + N L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYM 441
H NIVKL ++L++E++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 61
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYM 441
H NIVKL ++L++E++
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFL 86
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFLH 88
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 63
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 64 NHPNIVKLLDVIHTENKLYLVFEFLH 89
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E+++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEHVD 88
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYM 441
H NIVKL ++L++E++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFL 87
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 155 LSKLQRLDLSSNRL-TGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSY 213
+S L+ LD+S N L + + +++ LN+S N+LTG+V L +K + L
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHN 459
Query: 214 NQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLP 269
N++ +P+++ +L+ L EL++ +N L RLT+L Y+ L N + P
Sbjct: 460 NRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 150 PEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNM 209
P+IS LS+L+ L LS NR+ ++L YL++S N L + S L+++
Sbjct: 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS---LRHL 126
Query: 210 GLSYNQLSG-PLPQEIGNLKNLMELDLG 236
LS+N P+ +E GNL L L L
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 98 TCNSAGSIIGLHLSRDYGSFEEPVQLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSK 157
TC A SI+ L+LS + L+ F C P + SIP +++ L
Sbjct: 423 TCAWAESILVLNLSSN--------MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474
Query: 158 LQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVP 197
LQ L+++SN+L L +L Y+ + N T P
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 61
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFLH 87
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 59
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFLH 88
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 68
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 69 PNIVKLLDVIHTENKLYLVFEFLH 92
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
++P I ++L LDL NR+ E + +L L +++NI++ P +L NL
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 207 KNMGLSYNQLS-GPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ +GL N+L PL G L NL +LD+ N ++ + L NL + + N
Sbjct: 83 RTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%)
Query: 151 EISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMG 210
E ++ L+ L+L+ N ++ P NL NL L + N L L+NL +
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 211 LSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
+S N++ L +L NL L++G N L+ L +L ++L + + +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 271 EIGNLKNLIELNV 283
+ +L LI L +
Sbjct: 171 ALSHLHGLIVLRL 183
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%)
Query: 123 LSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNL 182
L+Q F+ FP+LE L ++ P + L L+ L L SNRL L NL
Sbjct: 47 LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106
Query: 183 VYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIG 242
L+IS+N + + L NLK++ + N L + L +L +L L +L
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 243 PIPSTLGRLTNLNYMSL 259
L L L + L
Sbjct: 167 IPTEALSHLHGLIVLRL 183
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 61
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFLH 87
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 62
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 63 NHPNIVKLLDVIHTENKLYLVFEFLH 88
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 60
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYM 441
H NIVKL ++L++E++
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFL 85
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 61
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 62 NHPNIVKLLDVIHTENKLYLVFEFLH 87
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 59
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 60
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFLH 86
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 60
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFLH 86
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 61
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ----LPNGKVFALKKLHTSE-TEELAFIKSFRNEAQVLS 414
E+F++ +GTG YG V+ + GK++A+K L + ++ + R E QVL
Sbjct: 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 113
Query: 415 QVLHRN-IVKL-YGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
+ +V L Y F K + LI +Y+ GG LF +L E E
Sbjct: 114 HIRQSPFLVTLHYAFQTETK-LHLILDYINGGELFTHLSQRERFTE 158
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 59
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 60
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 61 NHPNIVKLLDVIHTENKLYLVFEFLH 86
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 59
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 65
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 66 PNIVKLLDVIHTENKLYLVFEFLH 89
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLH 84
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 68
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 69 PNIVKLLDVIHTENKLYLVFEFLH 92
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 61
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV 416
+ E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKEL 59
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYME 442
H NIVKL ++L++E++
Sbjct: 60 NHPNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 61
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 61
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLH 84
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLH 84
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLH 84
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 62
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 63 PNIVKLLDVIHTENKLYLVFEFLH 86
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEA--QVLS 414
AT ++ IG G YG+VYKA+ P+ G ALK + EE I + R A + L
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 415 QVLHRNIVKLYGFCLHRKC-----MFLIYEYME 442
H N+V+L C + + L++E+++
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 94
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ N A+K L +++F EA ++ + H +V+LY
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMS----VQAFLEEANLMKTLQHDKLVRLYAV 75
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ +++I E+M GSL L ++E
Sbjct: 76 VTKEEPIYIITEFMAKGSLLDFLKSDE 102
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+I IG G + V ++ G+V+A+K ++ + + + FR E VL
Sbjct: 61 DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDR 120
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
R I +L+ ++L+ EY GG L L E + + A+
Sbjct: 121 RWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMAR 165
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKAQ-LPNGKVF-ALKKLHTSETEELAFIKSFRNEA-- 410
L RA + ++ IG G YG V+KA+ L NG F ALK++ EE + + R A
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 411 QVLSQVLHRNIVKLYGFC 428
+ L H N+V+L+ C
Sbjct: 66 RHLETFEHPNVVRLFDVC 83
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEA--QVLS 414
AT ++ IG G YG+VYKA+ P+ G ALK + EE I + R A + L
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 415 QVLHRNIVKLYGFCLHRKC-----MFLIYEYME 442
H N+V+L C + + L++E+++
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 94
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++++D++ +G G + V + G FA K ++T + F K EA++ ++
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK-LEREARICRKLQ 63
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 64 HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD 106
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++++D++ +G G + V + G FA K ++T + F K EA++ ++
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK-LEREARICRKLQ 63
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 64 HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD 106
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
EDF + +G G + VY+A+ + G A+K + + ++ +NE ++ Q+ H
Sbjct: 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+I++LY + ++L+ E G +
Sbjct: 71 PSILELYNYFEDSNYVYLVLEMCHNGEM 98
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 361 DFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
++ ++ IG G + V A+ + G+ A+K + ++ + K FR E +++ + H
Sbjct: 16 NYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFR-EVRIMKILNHP 74
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
NIVKL+ K ++L+ EY GG +F
Sbjct: 75 NIVKLFEVIETEKTLYLVMEYASGGEVF 102
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEA--QVLS 414
AT ++ IG G YG+VYKA+ P+ G ALK + EE I + R A + L
Sbjct: 2 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 415 QVLHRNIVKLYGFCLHRKC-----MFLIYEYME 442
H N+V+L C + + L++E+++
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 94
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A+K + ++ + K FR E +++ + H NIVKL+
Sbjct: 21 TIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLF 79
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 80 EVIETEKTLYLVMEYASGGEVF 101
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+DI +G+G +G V++ + G+VF K ++T + +K NE +++Q+ H
Sbjct: 53 YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVK---NEISIMNQLHHPK 109
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
++ L+ + M LI E++ GG LF +
Sbjct: 110 LINLHDAFEDKYEMVLILEFLSGGELFDRI 139
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A+K + ++ + K FR E +++ + H NIVKL+
Sbjct: 14 TIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLF 72
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 73 EVIETEKTLYLVMEYASGGEVF 94
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A+K + ++ + K FR E +++ + H NIVKL+
Sbjct: 21 TIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLF 79
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 80 EVIETEKTLYLVMEYASGGEVF 101
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++++D++ +G G + V + G FA K ++T + F K EA++ ++
Sbjct: 4 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQK-LEREARICRKLQ 62
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 63 HPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD 105
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V ALKK+ +TE + E +L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEHVH 84
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A+K + ++ + K FR E +++ + H NIVKL+
Sbjct: 21 TIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLF 79
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 80 EVIETEKTLYLVMEYASGGEVF 101
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKAQ-LPNGKVF-ALKKLHTSETEELAFIKSFRNEA-- 410
L RA + ++ IG G YG V+KA+ L NG F ALK++ EE + + R A
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 411 QVLSQVLHRNIVKLYGFC 428
+ L H N+V+L+ C
Sbjct: 66 RHLETFEHPNVVRLFDVC 83
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G + V A+ + G+ A+K + ++ + K FR E +++ + H NIVKL+
Sbjct: 23 IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIVKLFE 81
Query: 427 FCLHRKCMFLIYEYMEGGSLF 447
K ++LI EY GG +F
Sbjct: 82 VIETEKTLYLIMEYASGGEVF 102
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + G+ A+K + ++ + K FR E +++ + H NIVKL+
Sbjct: 19 TIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIVKLF 77
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++LI EY GG +F
Sbjct: 78 EVIETEKTLYLIMEYASGGEVF 99
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKAQ-LPNGKVF-ALKKLHTSETEELAFIKSFRNEA-- 410
L RA + ++ IG G YG V+KA+ L NG F ALK++ EE + + R A
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 411 QVLSQVLHRNIVKLYGFC 428
+ L H N+V+L+ C
Sbjct: 66 RHLETFEHPNVVRLFDVC 83
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 357 RATEDF-DIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQ 411
+ EDF DI +G+G + V K + G +A +KK + + + E
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+L QVLH N++ L+ +R + LI E + GG LF L E
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKE 110
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 357 RATEDF-DIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQ 411
+ EDF DI +G+G + V K + G +A +KK + + + E
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+L QVLH N++ L+ +R + LI E + GG LF L E
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKE 110
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 354 DLIRATEDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQV 412
DL ED+++ IG G +G V + + KV+A+K L E + + F E +
Sbjct: 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDI 122
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
++ +V+L+ + ++++ EYM GG L NL +N + E WA+
Sbjct: 123 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDL-VNLMSNYDVPE-KWAR 171
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKV---FALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
D + IG G +G V KA++ + A+K++ +++ + F E +VL ++
Sbjct: 23 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDH--RDFAGELEVLCKLG 80
Query: 418 HR-NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
H NI+ L G C HR ++L EY G+L
Sbjct: 81 HHPNIINLLGACEHRGYLYLAIEYAPHGNLL 111
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 354 DLIRATEDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQV 412
DL ED+++ IG G +G V + + KV+A+K L E + + F E +
Sbjct: 68 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDI 127
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
++ +V+L+ + ++++ EYM GG L NL +N + E WA+
Sbjct: 128 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDL-VNLMSNYDVPE-KWAR 176
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKV---FALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
D + IG G +G V KA++ + A+K++ +++ + F E +VL ++
Sbjct: 16 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDH--RDFAGELEVLCKLG 73
Query: 418 HR-NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
H NI+ L G C HR ++L EY G+L
Sbjct: 74 HHPNIINLLGACEHRGYLYLAIEYAPHGNLL 104
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 354 DLIRATEDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQV 412
DL ED+++ IG G +G V + + KV+A+K L E + + F E +
Sbjct: 68 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDI 127
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
++ +V+L+ + ++++ EYM GG L NL +N + E WA+
Sbjct: 128 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDL-VNLMSNYDVPE-KWAR 176
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKV---FALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
D + IG G +G V KA++ + A+K++ +++ + F E +VL ++
Sbjct: 26 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDH--RDFAGELEVLCKLG 83
Query: 418 HR-NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
H NI+ L G C HR ++L EY G+L
Sbjct: 84 HHPNIINLLGACEHRGYLYLAIEYAPHGNLL 114
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 75
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 76 VVTQEPIYIITEYMENGSL 94
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 357 RATEDF-DIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQ 411
+ EDF DI +G+G + V K + G +A +KK + + + E
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+L QVLH N++ L+ +R + LI E + GG LF L E
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKE 110
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 357 RATEDF-DIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQ 411
+ EDF DI +G+G + V K + G +A +KK + + + E
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+L QVLH N++ L+ +R + LI E + GG LF L E
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKE 110
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 77
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 78 VVTQEPIYIITEYMENGSL 96
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 84
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 85 VVTQEPIYIITEYMENGSL 103
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 81
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 82 VVTQEPIYIITEYMENGSL 100
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 76
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 77 VVTQEPIYIITEYMENGSL 95
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 357 RATEDF-DIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQ 411
+ EDF DI +G+G + V K + G +A +KK + + + E
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+L QVLH N++ L+ +R + LI E + GG LF L E
Sbjct: 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKE 110
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 81
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 82 VVTQEPIYIITEYMENGSL 100
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 80
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 81 VVTQEPIYIITEYMENGSL 99
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 75
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 76 VVTQEPIYIITEYMENGSL 94
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + +GK+ A+KK L + EL F NE ++ H N+V++
Sbjct: 28 IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF-----NEVVIMRDYQHENVVEM 82
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 83 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 118
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 75
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 76 VVTQEPIYIITEYMENGSL 94
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + +GK+ A+KK L + EL F NE ++ H N+V++
Sbjct: 159 IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF-----NEVVIMRDYQHENVVEM 213
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 214 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 249
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + +GK+ A+KK L + EL F NE ++ H N+V++
Sbjct: 37 IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF-----NEVVIMRDYQHENVVEM 91
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 92 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 127
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 356 IRATEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLS 414
+R DF+ +G G +G V KA+ + + +A+KK+ +E E+L+ I S E +L+
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILS---EVMLLA 57
Query: 415 QVLHRNIVKLYGFCLHRK-------------CMFLIYEYMEGGSLFCNLHN 452
+ H+ +V+ Y L R+ +F+ EY E +L+ +H+
Sbjct: 58 SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHS 108
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 83
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 84 VVTQEPIYIITEYMENGSL 102
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + +GK+ A+KK L + EL F NE ++ H N+V++
Sbjct: 39 IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF-----NEVVIMRDYQHENVVEM 93
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 94 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 129
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 85
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 86 VVTQEPIYIITEYMENGSL 104
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 71
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 72 VVTQEPIYIITEYMENGSL 90
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G YG+V+KA+ ++ ALK++ + +E + R E +L ++ H+NIV+L+
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALR-EICLLKELKHKNIVRLHD 68
Query: 427 FCLHRKCMFLIYEYME 442
K + L++E+ +
Sbjct: 69 VLHSDKKLTLVFEFCD 84
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + +GK+ A+KK L + EL F NE ++ H N+V++
Sbjct: 32 IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF-----NEVVIMRDYQHENVVEM 86
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 87 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 122
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A++ + ++ + K FR E +++ + H NIVKL+
Sbjct: 21 TIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLF 79
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 80 EVIETEKTLYLVMEYASGGEVF 101
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A++ + ++ + K FR E +++ + H NIVKL+
Sbjct: 21 TIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFR-EVRIMKVLNHPNIVKLF 79
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 80 EVIETEKTLYLVMEYASGGEVF 101
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G YG+V+KA+ ++ ALK++ + +E + R E +L ++ H+NIV+L+
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALR-EICLLKELKHKNIVRLHD 68
Query: 427 FCLHRKCMFLIYEYME 442
K + L++E+ +
Sbjct: 69 VLHSDKKLTLVFEFCD 84
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E +I IG G +G VY + L + ++L K+F+ E Q H
Sbjct: 33 EQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQL---KAFKREVMAYRQTRHE 89
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRV--NIVKAM 471
N+V G C+ + +I +G +L+ + + + ++++ +++ IVK M
Sbjct: 90 NVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGM 143
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 70
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 71 VVTQEPIYIITEYMENGSL 89
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 357 RATEDF-DIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQ 411
+ EDF DI +G+G + V K + G +A +KK + + + E
Sbjct: 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVS 67
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+L QVLH NI+ L+ +R + LI E + GG LF L E
Sbjct: 68 ILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKE 110
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 356 IRATEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLS 414
+R DF+ +G G +G V KA+ + + +A+KK+ +E E+L+ I S E +L+
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILS---EVXLLA 57
Query: 415 QVLHRNIVKLYGFCLHRK-------------CMFLIYEYMEGGSLFCNLHN 452
+ H+ +V+ Y L R+ +F+ EY E +L+ +H+
Sbjct: 58 SLNHQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHS 108
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
Query: 151 EISALSKLQRLDLSSNRLTGSI-PSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNM 209
EI + ++ +S R+ + PS+I ++L+ S N+LT TV G LT L+ +
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPF---LHLDFSNNLLTDTVFENCGHLTELETL 353
Query: 210 GLSYNQLS--GPLPQEIGNLKNLMELDLGTNSL-----IGPIPSTLGRLT-NLNYMSLSR 261
L NQL + + +K+L +LD+ NS+ G T L+ N++ L+
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 262 NMFGGL----------------LPQEIGNLKNLIELNVGSNSL 288
+F L +P+++ L+ L ELNV SN L
Sbjct: 414 TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 148 IPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLK 207
+PP I L DL SN++ SIP ++ L L LN++ N L LT+L+
Sbjct: 419 LPPRIKVL------DLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 208 NMGLSYNQLSGPLPQ 222
+ L N P+
Sbjct: 472 KIWLHTNPWDCSCPR 486
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
+D S N L +P ++ + LNIS+N ++ S + SL+ L+ + +S+N++
Sbjct: 5 VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGL-LPQEIGNLKNLI 279
+ L LDL N L+ + NL ++ LS N F L + +E GN+ L
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 280 ELNVGSNSL 288
L + + L
Sbjct: 119 FLGLSTTHL 127
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + +GK+ A+KK L + EL F NE ++ H N+V++
Sbjct: 82 IGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLF-----NEVVIMRDYQHENVVEM 136
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 137 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 172
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 362 FDIRYCIGTGGYGSVYKA--QLPNGKVFALKKL-HTSETEELAFIKSFRNEAQVLSQVLH 418
++++ CI GG G +Y A + NG+ LK L H+ + E A + R Q L++V+H
Sbjct: 82 YEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAER---QFLAEVVH 138
Query: 419 RNIVKLYGFCLHRK-----CMFLIYEYMEGGSL 446
+IV+++ F H +++ EY+ G SL
Sbjct: 139 PSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSL 171
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ IGTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EYM GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHL 132
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 367 CIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
IG G + V A+ + GK A+K + ++ + K FR E ++ + H NIVKL+
Sbjct: 21 TIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFR-EVRIXKVLNHPNIVKLF 79
Query: 426 GFCLHRKCMFLIYEYMEGGSLF 447
K ++L+ EY GG +F
Sbjct: 80 EVIETEKTLYLVXEYASGGEVF 101
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ IGTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EYM GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHL 132
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GT G + + QL KV A+K L+ + L + + E Q L H +I+KLY
Sbjct: 21 VGTFGKVKIGEHQLTGHKV-AVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQV 79
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRV 465
F++ EY+ GG LF + + E++ A+R+
Sbjct: 80 ISTPTDFFMVMEYVSGGELFDYICKHGRVEEME-ARRL 116
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+GT G + + QL KV A+K L+ + L + + E Q L H +I+KLY
Sbjct: 21 VGTFGKVKIGEHQLTGHKV-AVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQV 79
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRV 465
F++ EY+ GG LF + + E++ A+R+
Sbjct: 80 ISTPTDFFMVMEYVSGGELFDYICKHGRVEEME-ARRL 116
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V AL K+ +TE + E +L ++ H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRL-DTETEGVPSTAIREISLLKELNH 61
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 62 PNIVKLLDVIHTENKLYLVFEFLH 85
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E+F IG G YG VYKA+ G+V AL K+ +TE + E +L ++ H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRL-DTETEGVPSTAIREISLLKELNH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYME 442
NIVKL ++L++E++
Sbjct: 61 PNIVKLLDVIHTENKLYLVFEFLH 84
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G YG V+K + G++ A+KK SE + + + R E ++L Q+ H N+V L
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALR-EIRMLKQLKHPNLVNLLE 69
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
++ + L++EY + L
Sbjct: 70 VFRRKRRLHLVFEYCDHTVL 89
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 154 ALSKLQRLDLS-SNRLTGSIPSEIGNLRNLVYLNISKN---ILTGTVPSTLGSLTNLKNM 209
L +L+ LD SN S S +LRNL+YL+IS + + + L SL LK
Sbjct: 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 477
Query: 210 GLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGL 267
G S+ + LP L+NL LDL L P+ L++L +++S N F L
Sbjct: 478 GNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 152 ISALSKLQRLDLSSNRLTGS-IPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMG 210
+ LS L+ L ++ N + +P LRNL +L++S+ L P+ SL++L+ +
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 211 LSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRL-TNLNYMSLSRNMFG 265
+S+N L +L LD N ++ L ++L +++L++N F
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMG 210
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 211 LSYNQLSG 218
LS N++
Sbjct: 180 LSSNKIQS 187
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 37 QCMELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+I IG G +G V Q + K++A+K ++ + E +++ E Q++ + H
Sbjct: 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEH 74
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFC----NLHNNEEAVEL 459
+V L+ + MF++ + + GG L N+H EE V+L
Sbjct: 75 PFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKL 119
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 154 ALSKLQRLDLS-SNRLTGSIPSEIGNLRNLVYLNISKN---ILTGTVPSTLGSLTNLKNM 209
L +L+ LD SN S S +LRNL+YL+IS + + + L SL LK
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 210 GLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGL 267
G S+ + LP L+NL LDL L P+ L++L +++S N F L
Sbjct: 454 GNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 152 ISALSKLQRLDLSSNRLTGS-IPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMG 210
+ LS L+ L ++ N + +P LRNL +L++S+ L P+ SL++L+ +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 211 LSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRL-TNLNYMSLSRNMFG 265
+S+N L +L LD N ++ L ++L +++L++N F
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMG 210
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 211 LSYNQLSG 218
LS N++
Sbjct: 156 LSSNKIQS 163
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 13 QCMELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 367 CIGTGGYGSVYKAQLPNGK------VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+G G +G V KA + K A+K L E + ++ +E VL QV H +
Sbjct: 30 TLGEGEFGKVVKATAFHLKGRAGYTTVAVKML--KENASPSELRDLLSEFNVLKQVNHPH 87
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSL 446
++KLYG C + LI EY + GSL
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKIRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 74 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 100
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 367 CIGTGGYGSVYKAQLPNGK------VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+G G +G V KA + K A+K L E + ++ +E VL QV H +
Sbjct: 30 TLGEGEFGKVVKATAFHLKGRAGYTTVAVKML--KENASPSELRDLLSEFNVLKQVNHPH 87
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSL 446
++KLYG C + LI EY + GSL
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALK---KLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G+G +G+VYK +P G+ + K+ T A ++ F +EA +++ + H ++V+
Sbjct: 46 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVE-FMDEALIMASMDHPHLVR 104
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRVNIVKAM 471
L G CL + L+ + M G L +H +++ + L+W V I K M
Sbjct: 105 LLGVCL-SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC--VQIAKGM 153
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 367 CIGTGGYGSVYKAQLPNGK------VFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+G G +G V KA + K A+K L E + ++ +E VL QV H +
Sbjct: 30 TLGEGEFGKVVKATAFHLKGRAGYTTVAVKML--KENASPSELRDLLSEFNVLKQVNHPH 87
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSL 446
++KLYG C + LI EY + GSL
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSL 113
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEIXINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEIXINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGL 211
I L ++ L L N+L S + L NL YL ++ N L LTNLK + L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 212 SYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
NQL LP + L NL L L N L +LTNL + L N L
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 271 EIGNLKNLIELNVGSNSL 288
L L +L++ N L
Sbjct: 176 VFDKLTQLKQLSLNDNQL 193
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 127 NFSCFPNLENLTFQSFPLAG----SIPPEI-SALSKLQRLDLSSNRLTGSIPSEI-GNLR 180
+ S L NLT+ L G S+P + L+ L+ L L N+L S+P + L
Sbjct: 77 DISALKELTNLTY--LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLT 133
Query: 181 NLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNS 239
NL YL + N L LTNL + L NQL LP+ + L L +L L N
Sbjct: 134 NLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQ 192
Query: 240 LIGPIPSTLGRLTNLNYMSLSRN 262
L RLT+L ++ L N
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEIXINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 137 LTFQSFPLAGSIPPE-ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGT 195
L F+S L +I + + L L+R ++ RLT + + ++RNL +L + NI
Sbjct: 103 LIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI--EE 160
Query: 196 VPSTL-GSLTNLKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTN 253
+PS L L NL+++ N+L +P+ I G + L +L+L +N L RLT+
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQ-MPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
Query: 254 LNYMSLSRNMFGGLLPQ 270
L + L N + P+
Sbjct: 220 LQKIWLHTNPWDCSCPR 236
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G +G V+ A+K L +SF EAQ++ ++ H +V+LY
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSP----ESFLEEAQIMKKLKHDKLVQLYA- 71
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ + ++++ EYM GSL L + E
Sbjct: 72 VVSEEPIYIVTEYMNKGSLLDFLKDGE 98
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
T+++ + +G G + V + ++P G+ +A K ++T + K EA++ +
Sbjct: 3 TDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQK-LEREARICRLLK 61
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 62 HPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEAD 104
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 322
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 323 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 349
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G G V+ A+K L AF+ EA ++ Q+ H+ +V+LY
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLA----EANLMKQLQHQRLVRLYA- 75
Query: 428 CLHRKCMFLIYEYMEGGSL 446
+ ++ +++I EYME GSL
Sbjct: 76 VVTQEPIYIITEYMENGSL 94
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 154 ALSKLQRLDLS-SNRLTGSIPSEIGNLRNLVYLNISKN---ILTGTVPSTLGSLTNLKNM 209
L +L+ LD SN S S +LRNL+YL+IS + + + L SL LK
Sbjct: 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 210 GLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGL 267
G S+ + LP L+NL LDL L P+ L++L +++S N F L
Sbjct: 159 GNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 154 ALSKLQRLDLSSNRLTGS-IPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLS 212
LS L+ L ++ N + +P LRNL +L++S+ L P+ SL++L+ + +S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 213 YNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRL-TNLNYMSLSRNMFG 265
+N L +L LD N ++ L ++L +++L++N F
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 362 FDIRYCIGTGGYGSVY---KAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
F++ +G G +G V+ K P+ G ++A+K L + + +++ + E +L+ V
Sbjct: 30 FELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRT-KMERDILADVN 88
Query: 418 HRNIVKL-YGFCLHRKCMFLIYEYMEGGSLFCNL 450
H +VKL Y F K ++LI +++ GG LF L
Sbjct: 89 HPFVVKLHYAFQTEGK-LYLILDFLRGGDLFTRL 121
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 352 YEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEA 410
+ED+ + T + +G G Y V A L NGK +A+K + + + FR E
Sbjct: 10 FEDMYKLTSEL-----LGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRV--FR-EV 61
Query: 411 QVLSQVL-HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIVK 469
+ L Q ++NI++L F +L++E ++GGS+ ++ + E + ++ V V
Sbjct: 62 ETLYQCQGNKNILELIEFFEDDTRFYLVFEKLQGGSILAHIQKQKHFNEREASRVVRDVA 121
Query: 470 A 470
A
Sbjct: 122 A 122
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G +G K G+V +K+L + E ++F E +V+ + H N++K G
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQ---RTFLKEVKVMRCLEHPNVLKFIG 74
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIVKAM 471
K + I EY++GG+L + + + + W++RV+ K +
Sbjct: 75 VLYKDKRLNFITEYIKGGTLRGIIKSMDS--QYPWSQRVSFAKDI 117
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
++P I A S QR+ L NR++ + + RNL L + N L G + LT L
Sbjct: 24 AVPTGIPASS--QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 207 KNMGLSYN-QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFG 265
+ + LS N QL P L +L L L L P L L Y+ L N
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Query: 266 GLLPQEIGNLKNLIELNVGSNSL 288
L +L NL L + N +
Sbjct: 142 ALPDNTFRDLGNLTHLFLHGNRI 164
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 3/164 (1%)
Query: 127 NFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSN-RLTGSIPSEIGNLRNLVYL 185
+F NL L S LAG + L+ L++LDLS N +L P+ L +L L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 186 NISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIP 245
++ + L P L L+ + L N L +L NL L L N I +P
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSVP 168
Query: 246 STLGR-LTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
R L +L+ + L +N + P +L L+ L + +N+L
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%)
Query: 149 PPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKN 208
P L+ LQ L L N L + +L NL +L + N + L +L
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 209 MGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ L N ++ P +L LM L L N+L L L +L Y+ L+ N
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALK---KLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G+G +G+VYK +P G+ + K+ T A ++ F +EA +++ + H ++V+
Sbjct: 23 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVE-FMDEALIMASMDHPHLVR 81
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRVNIVKAM 471
L G CL + L+ + M G L +H +++ + L+W V I K M
Sbjct: 82 LLGVCL-SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWC--VQIAKGM 130
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 70
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 71 KLVQLYA-VVSEEPIYIVTEYMNKGSLL 97
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 185 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGNMSPEAFLQ----EAQVMKKLRHE 240
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 241 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 267
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 74 KLVQLYA-VVSEEPIYIVIEYMSKGSLL 100
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 7 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 62
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 63 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 89
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 11 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 66
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 67 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 93
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 239
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 240 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 266
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 362 FDIRYCIGTGGYGSVYKAQ-LPNGKVFALK-----KLHTSETEELAFIKSFRNEAQVLSQ 415
F+ + +GTG + V A+ GK+FA+K L E+ S NE VL +
Sbjct: 24 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKES-------SIENEIAVLRK 76
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H NIV L ++L+ + + GG LF
Sbjct: 77 IKHENIVALEDIYESPNHLYLVMQLVSGGELF 108
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 9 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 64
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 65 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 91
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKN-I 191
+L NL P+ P S L+ L+ L +L IG L L LN++ N I
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 135
Query: 192 LTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPI 244
+ +P+ +LTNL ++ LSYN + ++ L+ +++L + + PI
Sbjct: 136 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 188
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGL 211
S S+LQ LDLS + L +L L ++ N + P + LT+L+N+
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 212 SYNQLSGPLPQEIGNLKNLMELDLGTNSLIG-PIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
+L+ IG L L +L++ N + +P+ LTNL ++ LS N +
Sbjct: 107 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 166
Query: 271 EIGNLKNLIELNVGSNSLIGPI 292
++ L+ ++N+ + + PI
Sbjct: 167 DLQFLRENPQVNLSLDMSLNPI 188
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 368 IGTGGYGSVYKAQLPN-GKVFALKKL---HTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G G + +VYKA+ N ++ A+KK+ H SE ++ ++ E ++L ++ H NI+
Sbjct: 18 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKD-GINRTALREIKLLQELSHPNIIG 76
Query: 424 LYGFCLHRKCMFLIYEYME 442
L H+ + L++++ME
Sbjct: 77 LLDAFGHKSNISLVFDFME 95
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E + +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINA 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 74 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 100
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
T+++ + +G G + V + ++P G+ +A K ++T + K EA++ +
Sbjct: 3 TDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQK-LEREARICRLLK 61
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 62 HPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEAD 104
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 74 KLVQLYA-VVSEEPIYIVIEYMSKGSLL 100
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 239
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 240 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 266
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 70
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 71 KLVQLYA-VVSEEPIYIVTEYMNKGSLL 97
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 74 KLVQLYA-VVSEEPIYIVTEYMSKGSLL 100
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKN-I 191
+L NL P+ P S L+ L+ L +L IG L L LN++ N I
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 192 LTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPI 244
+ +P+ +LTNL ++ LSYN + ++ L+ +++L + + PI
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGL 211
S S+LQ LDLS + L +L L ++ N + P + LT+L+N+
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 212 SYNQLSGPLPQEIGNLKNLMELDLGTNSLIG-PIPSTLGRLTNLNYMSLSRNMFGGLLPQ 270
+L+ IG L L +L++ N + +P+ LTNL ++ LS N +
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171
Query: 271 EIGNLKNLIELNVGSNSLIGPI 292
++ L+ ++N+ + + PI
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPI 193
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 349 RIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFR 407
RIVY + DF ++ +G G YG V A P G++ A+KK+ + A +++ R
Sbjct: 4 RIVYN----ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFA-LRTLR 58
Query: 408 NEAQVLSQVLHRNIVKLY 425
E ++L H NI+ ++
Sbjct: 59 -EIKILKHFKHENIITIF 75
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 349 RIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFR 407
RIVY + DF ++ +G G YG V A P G++ A+KK+ + A +++ R
Sbjct: 4 RIVYN----ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFA-LRTLR 58
Query: 408 NEAQVLSQVLHRNIVKLY 425
E ++L H NI+ ++
Sbjct: 59 -EIKILKHFKHENIITIF 75
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 349 RIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFR 407
RIVY + DF ++ +G G YG V A P G++ A+KK+ + A +++ R
Sbjct: 4 RIVYN----ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFA-LRTLR 58
Query: 408 NEAQVLSQVLHRNIVKLY 425
E ++L H NI+ ++
Sbjct: 59 -EIKILKHFKHENIITIF 75
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 352 YEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSET-EELAFIKSFRNE 409
Y++L++ +++ IGTGG+ V A + G++ A+K + + +L IK+ E
Sbjct: 5 YDELLKY---YELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKT---E 58
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ L + H++I +LY +F++ EY GG LF
Sbjct: 59 IEALKNLRHQHICQLYHVLETANKIFMVLEYCPGGELF 96
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPPE-ISALSKLQRLDLSSNRLTGS--IPSEIGN 178
QL Q+N + FP+L +L + + + L LQ+LDLS + + S ++ N
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN 373
Query: 179 LRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQE-IGNLKNLMELDLGT 237
LR+L YLN+S N G L+ + +++ L P NL L L+L
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 238 NSLIGPIPSTLGRLTNLNYMSLSRNMF--GGL----LPQEIGNLKNLI 279
L L L +L +++L N F G + L Q +G+L+ LI
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI 481
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Query: 116 SFEEPVQLSQLNFSCFPNLE--NLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIP 173
S+ EP+ L F P LE ++ F + P L L+ L+LS L S
Sbjct: 383 SYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSP-FQNLHLLRVLNLSHCLLDTSNQ 441
Query: 174 SEIGNLRNLVYLNISKN-ILTGTVPST--LGSLTNLKNMGLSYNQLSGPLPQEIGNLKNL 230
+ L++L +LN+ N G++ T L + +L+ + LS L Q L+N+
Sbjct: 442 HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNV 501
Query: 231 MELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
LDL NSL G L L L Y++++ N + P + L +N+ N L
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 154 ALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSY 213
L + LDLS N LTG + +L+ L YLN++ N + P L +L+ + LS+
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSH 555
Query: 214 NQLS 217
N L
Sbjct: 556 NPLD 559
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGL 211
I L+ L L+L N++T P + NL + L +S N L S + L ++K + L
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 120
Query: 212 SYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQE 271
+ Q++ P + L NL L L N + P L LTNL Y+S+ N L P
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP-- 174
Query: 272 IGNLKNLIELNVGSNSL 288
+ NL L L N +
Sbjct: 175 LANLSKLTTLRADDNKI 191
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 134 LENLT-FQSFPLAGSIPPEISALSKLQR---LDLSSNRLTGSIPSEIGNLRNLVYLNISK 189
L+NLT L+G+ +SA++ LQ LDL+S ++T P + L NL L +
Sbjct: 87 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 144
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLG 249
N +T P L LTNL+ + + NQ++ P + NL L L N + P L
Sbjct: 145 NQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LA 198
Query: 250 RLTNLNYMSLSRNMFGGLLPQEIGNLKNL 278
L NL + L N + P + NL NL
Sbjct: 199 SLPNLIEVHLKDNQISDVSP--LANLSNL 225
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 239
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 240 KLVQLYA-VVSEEPIYIVGEYMSKGSLL 266
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ IGTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM GSL
Sbjct: 74 KLVQLYAV-VSEEPIYIVCEYMSKGSLL 100
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 4 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 58
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 59 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 91
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 3/143 (2%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
++P I A S QR+ L NR++ + RNL L + N+L + L L
Sbjct: 24 AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 81
Query: 207 KNMGLSYN-QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFG 265
+ + LS N QL P L L L L L P L L Y+ L N
Sbjct: 82 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 141
Query: 266 GLLPQEIGNLKNLIELNVGSNSL 288
L +L NL L + N +
Sbjct: 142 ALPDDTFRDLGNLTHLFLHGNRI 164
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%)
Query: 149 PPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKN 208
P L+ LQ L L N L +L NL +L + N ++ L +L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 209 MGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ L N+++ P +L LM L L N+L L L L Y+ L+ N
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 6 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 60
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 61 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 93
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G YG V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAYGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 3/143 (2%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
++P I A S QR+ L NR++ + RNL L + N+L + L L
Sbjct: 25 AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 207 KNMGLSYN-QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFG 265
+ + LS N QL P L L L L L P L L Y+ L N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 266 GLLPQEIGNLKNLIELNVGSNSL 288
L +L NL L + N +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRI 165
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%)
Query: 149 PPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKN 208
P L+ LQ L L N L +L NL +L + N ++ L +L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 209 MGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ L N+++ P +L LM L L N+L L L L Y+ L+ N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 356 IRATEDFDIRYCIGTGGYGSVY-KAQLPNGKVFALKKLHTSETEELAFIKS-FRNEAQVL 413
IR T F +G+G + V+ Q GK+FALK + S AF S NE VL
Sbjct: 7 IRKT--FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP----AFRDSSLENEIAVL 60
Query: 414 SQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
++ H NIV L +L+ + + GG LF
Sbjct: 61 KKIKHENIVTLEDIYESTTHYYLVMQLVSGGELF 94
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 62 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 121
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 153
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 62 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 121
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 153
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 28 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 87
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 88 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 119
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 133
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G+VY A+ + N +V A+KK+ S + + E + L ++ H N ++ G
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 82
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +L+ EY G +
Sbjct: 83 CYLREHTAWLVMEYCLGSA 101
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G+VY A+ + N +V A+KK+ S + + E + L ++ H N ++ G
Sbjct: 62 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +L+ EY G +
Sbjct: 122 CYLREHTAWLVMEYCLGSA 140
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 36 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 95
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 96 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 127
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ FD +GTG +G V + +G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRN-------EAQV 412
ED +G G + ++K +V +LH +E K+ RN A +
Sbjct: 8 EDLIFNESLGQGTFTKIFKGV--RREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASM 65
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRV 465
+S++ H+++V YG C+ L+ E+++ GSL L N+ + + W V
Sbjct: 66 MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEV 118
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 368 IGTGGYG-SVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G ++ +G+ + +K+++ S +S R E VL+ + H NIV+
Sbjct: 32 IGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREES-RREVAVLANMKHPNIVQYRE 90
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNN-----EEAVELDW 461
++++ +Y EGG LF ++ +E LDW
Sbjct: 91 SFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDW 130
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%)
Query: 148 IPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLK 207
+P E+S L +DLS+NR++ N+ L+ L +S N L P T L +L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 208 NMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSL 240
+ L N +S +L L L +G N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 144 LAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSL 203
L IP +++ L L N+ T +P E+ N ++L +++S N ++ + ++
Sbjct: 25 LPKGIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM 77
Query: 204 TNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
T L + LSYN+L P+ LK+L L L N + L+ L+++++ N
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 149 PPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKN 208
P E + L + R SN+ +P I R++ L + N T VP L + +L
Sbjct: 5 PTECTCLDTVVR---CSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTL 58
Query: 209 MGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLL 268
+ LS N++S Q N+ L+ L L N L P T L +L +SL N +
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 269 PQEIGNLKNLIELNVGSNSL 288
+L L L +G+N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 156 SKLQRLDLSSNRLTGSIP---SEIGNLRNLVYLNISKN-ILTGTVPSTLGSLTNLKNMGL 211
S L++LDLSSN L P IG L L+ N N LT + L + T+++N+ L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 212 SYNQLSGPLPQEIGNLK--NLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLP 269
+ NQL LK NL +LDL N+L + L +L Y+SL N L P
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 270 QEIGNLKNL 278
+ L NL
Sbjct: 290 RSFYGLSNL 298
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 125 QLNFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRL----TGSIPSEIGNLR 180
+L F +L L S PL P + KL L L++ +L T + E+ N
Sbjct: 164 ELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-T 222
Query: 181 NLVYLNISKNILTGTVPSTLGSL--TNLKNMGLSYNQLSGPLPQEIGN-----LKNLMEL 233
++ L+++ N L T ST L TNL + LSYN L ++GN L +L L
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL-----HDVGNGSFSYLPSLRYL 277
Query: 234 DLGTNSLIGPIPSTLGRLTNLNYMSLSR 261
L N++ P + L+NL Y+SL R
Sbjct: 278 SLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 162 DLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLP 221
D S +LT IP ++ + N+ LN++ N L P+ + L + +N +S P
Sbjct: 10 DCSHLKLT-HIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 222 QEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
+ L L L+L N L T TNL + L N + N KNLI+L
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
Query: 282 NVGSNSL 288
++ N L
Sbjct: 127 DLSHNGL 133
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 148 IPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLK 207
IP ++ S + L+L+ N+L P+ L L+ N ++ P L LK
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 208 NMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ L +N+LS Q NL ELDL +NS+ + NL + LS N
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%)
Query: 149 PPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKN 208
P + S+L LD N ++ P L L LN+ N L+ T TNL
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE 101
Query: 209 MGLSYNQLSGPLPQEIGNLKNLMELDLGTNSL 240
+ L N + N KNL++LDL N L
Sbjct: 102 LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 114 YGSFEEPVQLSQLNFSCFPNLENLTFQSFPLAGS--IPPEISALSKLQRLDLSSNRLTGS 171
Y S+ + +QLS +F+ P+L+ L + L P L L LDLS+N +
Sbjct: 436 YLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
Query: 172 IPSEIGNLRNLVYLNISKNILT--------GTVPSTLGSLTNLKNMGLSYNQLSGPLPQE 223
+ L NL L+ N L G + L L++L + L N L +P
Sbjct: 496 NEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIP-- 552
Query: 224 IGNLKNLMEL 233
+G KNL EL
Sbjct: 553 VGVFKNLFEL 562
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 182 LVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLP-QEIGNLKNLMELDLGTNSL 240
L+ LN++KN ++ T L L+ + L N++ L QE L+N+ E+ L N
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 241 IGPIPSTLGRLTNLNYMSLSRNMFGG--LLPQEIGNLKNLIELNVGSNSL 288
+ S+ + +L + L R + P L+NL L++ +N++
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNI 492
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G+G +G V + A+K + E F + EAQ + ++ H +VK YG
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQ----EAQTMMKLSHPKLVKFYGV 71
Query: 428 CLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
C ++++ EY+ G L L ++ + +E
Sbjct: 72 CSKEYPIYIVTEYISNGCLLNYLRSHGKGLE 102
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKK--LHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A + GK A+KK L + EL F NE ++ H N+V +
Sbjct: 53 IGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLF-----NEVVIMRDYHHDNVVDM 107
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L ++++ E++EGG+L + NEE +
Sbjct: 108 YSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQI 143
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRN-------EAQV 412
ED +G G + ++K +V +LH +E K+ RN A +
Sbjct: 8 EDLIFNESLGQGTFTKIFKGV--RREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASM 65
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRV 465
+S++ H+++V YG C L+ E+++ GSL L N+ + + W V
Sbjct: 66 MSKLSHKHLVLNYGVCFCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEV 118
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 8 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 63
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + + ++ EYM GSL
Sbjct: 64 KLVQLYA-VVSEEPIXIVTEYMSKGSLL 90
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 27 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 86
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 87 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 118
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 133
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 133
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 133
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL- 417
+DFD+ IG G Y V +L +++A+K + + I + E V Q
Sbjct: 5 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN 64
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H +V L+ +F + EY+ GG L ++ + E
Sbjct: 65 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPE 105
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNG----KVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
F++ +G G +G V+ + +G +++A+K L + + +++ + E +L +V
Sbjct: 26 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRT-KMERDILVEVN 84
Query: 418 HRNIVKL-YGFCLHRKCMFLIYEYMEGGSLFCNL 450
H IVKL Y F K ++LI +++ GG LF L
Sbjct: 85 HPFIVKLHYAFQTEGK-LYLILDFLRGGDLFTRL 117
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM G L
Sbjct: 74 KLVQLYAV-VSEEPIYIVMEYMSKGCLL 100
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNG----KVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
F++ +G G +G V+ + +G +++A+K L + + +++ + E +L +V
Sbjct: 27 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRT-KMERDILVEVN 85
Query: 418 HRNIVKL-YGFCLHRKCMFLIYEYMEGGSLFCNL 450
H IVKL Y F K ++LI +++ GG LF L
Sbjct: 86 HPFIVKLHYAFQTEGK-LYLILDFLRGGDLFTRL 118
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL- 417
+DFD+ IG G Y V +L +++A+K + + I + E V Q
Sbjct: 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN 68
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H +V L+ +F + EY+ GG L ++ + E
Sbjct: 69 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPE 109
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G FA+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNG----KVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
F++ +G G +G V+ + +G +++A+K L + + +++ + E +L +V
Sbjct: 26 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRT-KMERDILVEVN 84
Query: 418 HRNIVKL-YGFCLHRKCMFLIYEYMEGGSLFCNL 450
H IVKL Y F K ++LI +++ GG LF L
Sbjct: 85 HPFIVKLHYAFQTEGK-LYLILDFLRGGDLFTRL 117
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G FA+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL- 417
+DFD+ IG G Y V +L +++A+K + + I + E V Q
Sbjct: 20 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASN 79
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H +V L+ +F + EY+ GG L ++ + E
Sbjct: 80 HPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPE 120
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G FA+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHL 132
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
E + +G G +G V+ A+K L AF++ EAQV+ ++ H
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ----EAQVMKKLRHE 73
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+V+LY + + ++++ EYM G L
Sbjct: 74 KLVQLYAV-VSEEPIYIVTEYMSKGCLL 100
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 368 IGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G+G + V K Q GK +A +KK S + + E +L ++ H NI+
Sbjct: 13 LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
L+ ++ + LI E + GG LF L E E
Sbjct: 73 LHDIFENKTDVVLILELVSGGELFDFLAEKESLTE 107
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 132
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 132
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 132
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 368 IGTGGYGSVYKAQLPNGKVF-ALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V A ++ A KK+ E+ + F+ E +++ + H NI++LY
Sbjct: 17 IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYE 73
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
++L+ E GG LF + + E D A+
Sbjct: 74 TFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAAR 110
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 368 IGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G+G + V K Q GK +A +KK S + + E +L ++ H NI+
Sbjct: 20 LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 79
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
L+ ++ + LI E + GG LF L E E
Sbjct: 80 LHDIFENKTDVVLILELVSGGELFDFLAEKESLTE 114
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 132
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 132
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 368 IGTGGYGSVYKAQLPNGKVF-ALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V A ++ A KK+ E+ + F+ E +++ + H NI++LY
Sbjct: 34 IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYE 90
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAK 463
++L+ E GG LF + + E D A+
Sbjct: 91 TFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAAR 127
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 368 IGTGGYGSVYKAQLP-NGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G G Y +VYK + + ALK++ E EE A + R E +L + H NIV L+
Sbjct: 10 LGEGTYATVYKGKSKLTDNLVALKEIRL-EHEEGAPCTAIR-EVSLLKDLKHANIVTLHD 67
Query: 427 FCLHRKCMFLIYEYME 442
K + L++EY++
Sbjct: 68 IIHTEKSLTLVFEYLD 83
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+D++++ IG+G V A P + A+K+++ + + + E Q +SQ H
Sbjct: 10 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ--TSMDELLKEIQAMSQCHH 67
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
NIV Y + + ++L+ + + GGS+
Sbjct: 68 PNIVSYYTSFVVKDELWLVMKLLSGGSVL 96
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+D++++ IG+G V A P + A+K+++ + + + E Q +SQ H
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ--TSMDELLKEIQAMSQCHH 72
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
NIV Y + + ++L+ + + GGS+
Sbjct: 73 PNIVSYYTSFVVKDELWLVMKLLSGGSVL 101
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 357 RATEDFDIRYCIGTGGYGSVYK------AQLPNGKVFALKKLHTSETEELAFIKSFRNEA 410
R T+D+ + +G G + V + Q K+ KKL + ++L EA
Sbjct: 28 RFTDDYQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKL------EREA 81
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
++ + H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 82 RICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEAD 131
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 68 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 121
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 122 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 153
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFAL---KKLHTSETEELAFIKSFRNEAQVLSQ 415
+DFD+ IG G Y V +L +++A+ KK ++ E++ ++++ E V Q
Sbjct: 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQT---EKHVFEQ 108
Query: 416 VL-HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H +V L+ +F + EY+ GG L ++ + E
Sbjct: 109 ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPE 152
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 154 ALSKLQRLDLS-SNRLTGSIPSEIGNLRNLVYLNISKN---ILTGTVPSTLGSLTNLKNM 209
L +L+ LD SN S S +LRNL+YL+IS + + + L SL LK
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 210 GLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
G S+ + LP L+NL LDL L P+ L++L ++++ N
Sbjct: 454 GNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 152 ISALSKLQRLDLSSNRLTGS-IPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMG 210
+ LS L+ L ++ N + +P LRNL +L++S+ L P+ SL++L+ +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 211 LSYNQLSGPLPQEIGNLKNLMELDLGTN 238
++ NQL L +L ++ L TN
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMG 210
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 211 LSYNQL 216
LS N++
Sbjct: 156 LSSNKI 161
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 13 QCMELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 359 TEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
T+++ + IG G + V + +L G +A K ++T + K EA++ +
Sbjct: 3 TDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQK-LEREARICRLLK 61
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV+L+ +L+++ + GG LF ++ E E D
Sbjct: 62 HSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEAD 104
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 34 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 93
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 94 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 125
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 34 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 93
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 94 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 125
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 12 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 71
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 72 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 109
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 68 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 105
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 78 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 115
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 362 FDIRYCIGTGGYGSVYKAQ------LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D R +GTG + V A+ L K A K L E S NE VL +
Sbjct: 20 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEG-------SMENEIAVLHK 72
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H NIV L ++LI + + GG LF
Sbjct: 73 IKHPNIVALDDIYESGGHLYLIMQLVSGGELF 104
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 362 FDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQV-LHR 419
F++ +G G YG VYK + + G++ A+K + + EE + + E +L + HR
Sbjct: 26 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE----EEIKQEINMLKKYSHHR 81
Query: 420 NIVKLYGFCLHR------KCMFLIYEYMEGGSL 446
NI YG + + ++L+ E+ GS+
Sbjct: 82 NIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSV 114
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K+F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQG--------KAFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K+F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQG--------KAFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K+F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQG--------KAFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 133
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 62 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 121
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 153
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 59
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 60 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 91
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 133
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 146 GSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I + Q L L N++T P +L L YLN++ N LT LT
Sbjct: 32 ASVPAGIPTTT--QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 206 LKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTN 238
L ++ L NQL +P + NLK+L + L N
Sbjct: 90 LTHLALHINQLKS-IPMGVFDNLKSLTHIYLFNN 122
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY+ GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHL 133
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 77
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 78 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 115
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 368 IGTGGYGSVYKAQL----PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G +G VYK L P + A+ + E + FR+EA + +++ H N+V
Sbjct: 34 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 424 LYGFCLHRKCMFLIYEYMEGGSL 446
L G + + +I+ Y G L
Sbjct: 94 LLGVVTKDQPLSMIFSYCSHGDL 116
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 155 LSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYN 214
L+ L L+L N++T P + NL + L +S N L S + L ++K + L+
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 215 QLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGN 274
Q++ P + L NL L L N + P L LTNL Y+S+ L P + N
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN 171
Query: 275 LKNLIELNVGSNSL 288
L L L N +
Sbjct: 172 LSKLTTLKADDNKI 185
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 68 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 105
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYGF 427
+G G Y +VYK V+ K ++EE + R E ++ ++ H NIV+LY
Sbjct: 13 LGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIR-EISLMKELKHENIVRLYDV 71
Query: 428 CLHRKCMFLIYEYME 442
+ L++E+M+
Sbjct: 72 IHTENKLTLVFEFMD 86
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 59
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 60 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 91
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 368 IGTGGYGSVYKAQL----PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G +G VYK L P + A+ + E + FR+EA + +++ H N+V
Sbjct: 17 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 424 LYGFCLHRKCMFLIYEYMEGGSL 446
L G + + +I+ Y G L
Sbjct: 77 LLGVVTKDQPLSMIFSYCSHGDL 99
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 59
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 60 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 91
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 91
Query: 426 GF 427
F
Sbjct: 92 YF 93
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+D R +GTG + V A+ K+ A+K + E S NE VL ++ H N
Sbjct: 20 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALE--GKEGSMENEIAVLHKIKHPN 77
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
IV L ++LI + + GG LF
Sbjct: 78 IVALDDIYESGGHLYLIMQLVSGGELF 104
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 109 HLSRDYGSFEEPVQLSQLNFSCFPNLE--NLTFQSFPLAGSIPPEISALSKLQRLDLSSN 166
HL S+ EP+ L F P LE +L F + + P L L+ L+LS +
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHS 435
Query: 167 RLTGSIPSEIGNLRNLVYLNISKNIL-TGTVPST--LGSLTNLKNMGLSYNQLSGPLPQE 223
L S L L +LN+ N G + T L +L L+ + LS+ LS
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495
Query: 224 IGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNV 283
+LK + +DL N L L L + Y++L+ N +LP + L +N+
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554
Query: 284 GSNSL 288
N L
Sbjct: 555 RQNPL 559
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 41 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 92
Query: 426 GF 427
F
Sbjct: 93 YF 94
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 47 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 98
Query: 426 GF 427
F
Sbjct: 99 YF 100
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 91
Query: 426 GF 427
F
Sbjct: 92 YF 93
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 29 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 80
Query: 426 GF 427
F
Sbjct: 81 YF 82
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 33 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 84
Query: 426 GF 427
F
Sbjct: 85 YF 86
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 113
Query: 426 GF 427
F
Sbjct: 114 YF 115
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 36 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 87
Query: 426 GF 427
F
Sbjct: 88 YF 89
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 113
Query: 426 GF 427
F
Sbjct: 114 YF 115
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 79
Query: 426 GF 427
F
Sbjct: 80 YF 81
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 12 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 71
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 72 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 109
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 56 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 107
Query: 426 GF 427
F
Sbjct: 108 YF 109
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ--LPNGKVF--ALKKLHTSETEELAFIKSFRNEAQVLSQ 415
+D + +G G +G V + + P+GK A+K L + + F E +
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67
Query: 416 VLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+ HRN+++LYG L M ++ E GSL L ++
Sbjct: 68 LDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQ 105
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 32 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 83
Query: 426 GF 427
F
Sbjct: 84 YF 85
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 64 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 115
Query: 426 GF 427
F
Sbjct: 116 YF 117
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+D R +GTG + V A+ K+ A+K + E S NE VL ++ H N
Sbjct: 20 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKE--GSMENEIAVLHKIKHPN 77
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
IV L ++LI + + GG LF
Sbjct: 78 IVALDDIYESGGHLYLIMQLVSGGELF 104
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 59
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 60 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 91
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 59
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 60 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 91
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
+D R +GTG + V A+ K+ A+K + E S NE VL ++ H N
Sbjct: 20 YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKE--GSMENEIAVLHKIKHPN 77
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLF 447
IV L ++LI + + GG LF
Sbjct: 78 IVALDDIYESGGHLYLIMQLVSGGELF 104
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 28/105 (26%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKL-HTSETEELAFIKSFRNEAQVLSQVLH 418
DF IG+GG+G V+KA+ +GK + +K++ + +E E E + L+++ H
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAE--------REVKALAKLDH 63
Query: 419 RNIVKLYGFCL-----------------HRKCMFLIYEYMEGGSL 446
NIV Y C KC+F+ E+ + G+L
Sbjct: 64 VNIVH-YNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTL 107
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 66 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 117
Query: 426 GF 427
F
Sbjct: 118 YF 119
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGL 211
++ ++L L + +N++T P + NL L +L I N ++ + + LT LK + +
Sbjct: 217 VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNV 272
Query: 212 SYNQLSGPLPQEIGNLKNLMELD---LGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLL 268
NQ+S +I L NL +L+ L N L +G LTNL + LS+N +
Sbjct: 273 GSNQIS-----DISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIR 327
Query: 269 P 269
P
Sbjct: 328 P 328
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 12/164 (7%)
Query: 127 NFSCFPNLENLT--FQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVY 184
+ S NL NL + + I P ++ L+K L+L +N + S + N L Y
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISP-LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNY 159
Query: 185 LNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPI 244
L ++++ + P + +LT+L ++ L+YNQ+ P + +L +L N +
Sbjct: 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT 215
Query: 245 PSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
P + T LN + + N L P + NL L L +G+N +
Sbjct: 216 P--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 12 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 68
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 69 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGXLLDYVREHKDNIGSQYLLNWC--V 125
Query: 466 NIVKAM 471
I K M
Sbjct: 126 QIAKGM 131
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 9 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 62
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 63 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 94
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQVLS 414
ED+D+ +G G G V QL +V A+K + + ++ + E +
Sbjct: 5 VEDWDLVQTLGEGAAGEV---QLAVNRVTEEAVAVKIVDMKRAVDCP--ENIKKEICINK 59
Query: 415 QVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
+ H N+VK YG +L EY GG LF
Sbjct: 60 MLNHENVVKFYGHRREGNIQYLFLEYCSGGELF 92
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 10/62 (16%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G VY+A+L +G++ A+KK+ K F+N E Q++ ++ H NIV+L
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKVLQD--------KRFKNRELQIMRKLDHCNIVRLR 158
Query: 426 GF 427
F
Sbjct: 159 YF 160
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 368 IGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G+G + V K Q GK +A +KK + + E +L ++ H NI+
Sbjct: 34 LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLXSSRRGVSREEIEREVNILREIRHPNIIT 93
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
L+ ++ + LI E + GG LF L E E
Sbjct: 94 LHDIFENKTDVVLILELVSGGELFDFLAEKESLTE 128
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 86
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 87 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 118
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V K Q P+G + A K +H L + RN+ QVLH
Sbjct: 16 DDFERISELGAGNGGVVTKVQHRPSGLIMARKLIH------LEIKPAIRNQIIRELQVLH 69
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 70 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 101
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 15 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 71
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 72 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 128
Query: 466 NIVKAM 471
I K M
Sbjct: 129 QIAKGM 134
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHL 133
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+ KL ++++ EY GG +F +L
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHL 133
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 361 DFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHR 419
+F I IG G + VY+A L +G ALKK+ + + E +L Q+ H
Sbjct: 33 NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 92
Query: 420 NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
N++K Y + + ++ E + G L
Sbjct: 93 NVIKYYASFIEDNELNIVLELADAGDL 119
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 14 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 70
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 71 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 127
Query: 466 NIVKAM 471
I K M
Sbjct: 128 QIAKGM 133
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 13 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 69
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 70 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 126
Query: 466 NIVKAM 471
I K M
Sbjct: 127 QIAKGM 132
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+ KL ++++ EY GG +F +L
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHL 133
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + + G +A+K L + +L I+ NE ++L V
Sbjct: 42 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+ KL ++++ EY GG +F +L
Sbjct: 102 PFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHL 133
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%)
Query: 200 LGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSL 259
G L +L + L NQL+G P ++ EL LG N + L L ++L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 260 SRNMFGGLLPQEIGNLKNLIELNVGSN 286
N ++P +L +L LN+ SN
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 12 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 68
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 69 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 125
Query: 466 NIVKAM 471
I K M
Sbjct: 126 QIAKGM 131
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
LDL +N++T + NL+NL L + N ++ P L L+ + LS NQL L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
P+++ K L EL + N + S L + + L N
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLS 212
+ KL + ++ +T +IP G +L L++ N +T ++L L NL +GLS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 213 YNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+N +S + N +L EL L N L+ +P L + + L N
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN 273
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 127 NFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIP------------- 173
+F NL L + ++ P + L KL+RL LS N+L +P
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVH 129
Query: 174 -SEIGNLRNLVYLNISKNILT--GTVPSTLGSLTNLKNMG---LSYNQLSG----PLPQE 223
+EI +R V+ +++ I+ GT P + N G LSY +++ +PQ
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ- 188
Query: 224 IGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNV 283
G +L EL L N + ++L L NL + LS N + + N +L EL++
Sbjct: 189 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247
Query: 284 GSNSLI 289
+N L+
Sbjct: 248 NNNKLV 253
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 155 LSKLQRLDLSSNRLTGSIPS------------EIGNLRNLVYLNISKNILTGTVPSTLGS 202
LSKL+ L L +N + SIPS ++G L+ L Y IS+ G
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEG-------- 183
Query: 203 LTNLKNMGLSYNQLSGPLPQEIGNLKNLM---ELDLGTNSLIGPIPSTLGRLTNLNYMSL 259
L+NL+ + L+ L +EI NL L+ ELDL N L P + L +L + +
Sbjct: 184 LSNLRYLNLAMCNL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 260 SRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
++ + NL++L+E+N+ N+L
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 13 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 69
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 70 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 126
Query: 466 NIVKAM 471
I K M
Sbjct: 127 QIAKGM 132
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 13 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 69
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 70 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 126
Query: 466 NIVKAM 471
I K M
Sbjct: 127 QIAKGM 132
>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii,
25.M01780 Or Tgme49_007820
Length = 458
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 362 FDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
++IR+ IGTG YG V +A +V A+KK+ E+L K E +L+++ H +
Sbjct: 55 YEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKI-LRVFEDLIDCKRILREIAILNRLNHDH 113
Query: 421 IVKLYGFCL 429
+VK+ +
Sbjct: 114 VVKVLDIVI 122
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 368 IGTGGYGSVY----KAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+G+G YG V K + ++K S + ++ E VL + H NI+K
Sbjct: 45 LGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLE----EVAVLKLLDHPNIMK 100
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWA 462
LY F ++ +L+ E +GG LF + + + E+D A
Sbjct: 101 LYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAA 139
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 11 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 67
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 68 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 124
Query: 466 NIVKAM 471
I K M
Sbjct: 125 QIAKGM 130
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 11 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 67
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 68 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGXLLDYVREHKDNIGSQYLLNWC--V 124
Query: 466 NIVKAM 471
I K M
Sbjct: 125 QIAKGM 130
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
LDL +N++T + NL+NL L + N ++ P L L+ + LS NQL L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
P+++ K L EL + N + S L + + L N
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLS 212
+ KL + ++ +T +IP G +L L++ N +T ++L L NL +GLS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 213 YNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+N +S + N +L EL L N L+ +P L + + L N
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN 273
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 127 NFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIP------------- 173
+F NL L + ++ P + L KL+RL LS N+L +P
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVH 129
Query: 174 -SEIGNLRNLVYLNISKNILT--GTVPSTLGSLTNLKNMG---LSYNQLSG----PLPQE 223
+EI +R V+ +++ I+ GT P + N G LSY +++ +PQ
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ- 188
Query: 224 IGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNV 283
G +L EL L N + ++L L NL + LS N + + N +L EL++
Sbjct: 189 -GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247
Query: 284 GSNSLI 289
+N L+
Sbjct: 248 NNNKLV 253
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 15 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 71
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 72 AYVMASVDNPHVCRLLGICL-TSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 128
Query: 466 NIVKAM 471
I K M
Sbjct: 129 QIAKGM 134
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 357 RATEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQV 412
R DF+ C+G GG+G V++A+ KV +A+K++ ELA K R E +
Sbjct: 3 RYLTDFEPIQCMGRGGFGVVFEAK---NKVDDCNYAIKRIRLP-NRELAREKVMR-EVKA 57
Query: 413 LSQVLHRNIVKLY 425
L+++ H IV+ +
Sbjct: 58 LAKLEHPGIVRYF 70
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAF---IKSFRNEA--Q 411
AT ++ IG G YG+VYKA+ P+ G ALK + I + R A +
Sbjct: 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66
Query: 412 VLSQVLHRNIVKLYGFCLHRKC-----MFLIYEYME 442
L H N+V+L C + + L++E+++
Sbjct: 67 RLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 102
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 13 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 69
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 70 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 126
Query: 466 NIVKAM 471
I K M
Sbjct: 127 QIAKGM 132
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+DF+ +G G G V+K + P+G V A K +H L + RN+ QVLH
Sbjct: 25 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH------LEIKPAIRNQIIRELQVLH 78
Query: 419 R----NIVKLYGFCLHRKCMFLIYEYMEGGSL 446
IV YG + + E+M+GGSL
Sbjct: 79 ECNSPYIVGFYGAFYSDGEISICMEHMDGGSL 110
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 14 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 70
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 71 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 127
Query: 466 NIVKAM 471
I K M
Sbjct: 128 QIAKGM 133
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 367 CIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRN-EAQVLSQVLHRNIVKLY 425
IG G +G V++A+L A+KK+ K F+N E Q++ V H N+V L
Sbjct: 47 VIGNGSFGVVFQAKLVESDEVAIKKVLQD--------KRFKNRELQIMRIVKHPNVVDLK 98
Query: 426 GF 427
F
Sbjct: 99 AF 100
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 14 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 70
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 71 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 127
Query: 466 NIVKAM 471
I K M
Sbjct: 128 QIAKGM 133
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 18 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 74
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 75 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 131
Query: 466 NIVKAM 471
I K M
Sbjct: 132 QIAKGM 137
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 36 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 92
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 93 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 149
Query: 466 NIVKAM 471
I K M
Sbjct: 150 QIAKGM 155
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 14 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 70
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 71 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 127
Query: 466 NIVKAM 471
I K M
Sbjct: 128 QIAKGM 133
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 11 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 67
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 68 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 124
Query: 466 NIVKAM 471
I K M
Sbjct: 125 QIAKGM 130
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 13 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 69
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 70 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 126
Query: 466 NIVKAM 471
I K M
Sbjct: 127 QIAKGM 132
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 18 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 74
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 75 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 131
Query: 466 NIVKAM 471
I K M
Sbjct: 132 QIAKGM 137
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 17 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 73
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 74 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 130
Query: 466 NIVKAM 471
I K M
Sbjct: 131 QIAKGM 136
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 169 TGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLK 228
+ PS+ + LV +NI +VP+ G T+ + + L+ NQ++ P +L
Sbjct: 3 SAGCPSQCSCDQTLVNC---QNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLV 57
Query: 229 NLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
NL +L +N L +LT L + L+ N + NLK+L +
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 170 GSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKN 229
S+P+ I + ++LN N +T P L NL+ + + N+L+ L
Sbjct: 25 ASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 230 LMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
L +LDL N L L +L ++ L N
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 11 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 67
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 68 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 124
Query: 466 NIVKAM 471
I K M
Sbjct: 125 QIAKGM 130
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 21 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 77
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 78 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 134
Query: 466 NIVKAM 471
I K M
Sbjct: 135 QIAKGM 140
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 356 IRATEDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQVLS 414
++ ++++I++ IG G YG VY A N K A+KK++ E+L K E +L+
Sbjct: 24 VKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRM-FEDLIDCKRILREITILN 82
Query: 415 QVLHRNIVKLYGFCL 429
++ I++L+ +
Sbjct: 83 RLKSDYIIRLHDLII 97
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 357 RATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFAL-----KKLHTSETEELAFIKSFRNEA 410
R TE++ + +G G + V + ++ G+ +A KKL + ++L EA
Sbjct: 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKL------EREA 61
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
++ + H NIV+L+ +LI++ + GG LF ++ E E D
Sbjct: 62 RICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEAD 111
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 11 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 67
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 68 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 124
Query: 466 NIVKAM 471
I K M
Sbjct: 125 QIAKGM 130
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 353 EDLIRATEDFDIRYCIGTGGYGSVYKAQLPNGK---VFALKKLHTSETEELAFIKSFRNE 409
ED++ + F + +G G +GSV +AQL V K+ ++ + I+ F E
Sbjct: 16 EDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLRE 75
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCM------FLIYEYMEGGSL 446
A + + H ++ KL G L + +I +M+ G L
Sbjct: 76 AACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDL 118
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 116
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 117 KIIRLYDYEITDQYIYMV---MECGNIDLN 143
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 30 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 88
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 89 KIIRLYDYEITDQYIYMV---MECGNIDLN 115
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 5 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 61
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRV 465
A V++ V + ++ +L G CL + LI + M G L + +++ + L+W V
Sbjct: 62 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--V 118
Query: 466 NIVKAM 471
I K M
Sbjct: 119 QIAKGM 124
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 30 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 88
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 89 KIIRLYDYEITDQYIYMV---MECGNIDLN 115
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMGL 211
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++ L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 212 SYNQLSG 218
S N++
Sbjct: 157 SSNKIQS 163
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 13 QCMELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 357 RATEDFDIRYCIGTGGYGSVYKAQLPNGKV----FALKKLHTSETEELAFIKSFRNEAQV 412
R DF+ C+G GG+G V++A+ KV +A+K++ ELA K R E +
Sbjct: 2 RYLTDFEPIQCLGRGGFGVVFEAK---NKVDDCNYAIKRIRLP-NRELAREKVMR-EVKA 56
Query: 413 LSQVLHRNIVKLYGFCLHR 431
L+++ H IV+ + L +
Sbjct: 57 LAKLEHPGIVRYFNAWLEK 75
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMGL 211
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++ L
Sbjct: 99 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 212 SYNQL 216
S N++
Sbjct: 159 SSNKI 163
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 15 QCMELNFYKIP--DNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 73 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 132
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRN 181
L +F FP L+ L + +LS L L L+ N + L +
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 182 LVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQL-SGPLPQEIGNLKNLMELDLGTNSL 240
L L + L +G L LK + +++N + S LP+ NL NL LDL +N +
Sbjct: 104 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 14 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 72
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 73 KIIRLYDYEITDQYIYMV---MECGNIDLN 99
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMGL 211
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++ L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 212 SYNQL 216
S N++
Sbjct: 158 SSNKI 162
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 14 QCMELNFYKIP--DNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 72 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 131
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRN 181
L +F FP L+ L + +LS L L L+ N + L +
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 182 LVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQL-SGPLPQEIGNLKNLMELDLGTNSL 240
L L + L +G L LK + +++N + S LP+ NL NL LDL +N +
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 12 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 71
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 72 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 112
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 12 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 71
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 72 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 112
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMGL 211
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++ L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 212 SYNQL 216
S N++
Sbjct: 158 SSNKI 162
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 14 QCEELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 72 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 131
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 132 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TEE + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEE--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNL 128
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 17/187 (9%)
Query: 114 YGSFEEPVQLSQLNFSCFPNLENLTFQSFPL--AGSIPPEISALSKLQRLDLSSNRLTGS 171
Y S+ + +QL++ +F+ P+L+ L + L S P L L LDLS+N +
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 172 IPSEIGNLRNLVYLNISKNILT--------GTVPSTLGSLTNLKNMGLSYNQLSGPLPQE 223
+ L L L++ N L G L L++L + L N +P E
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVE 554
Query: 224 IGNLKNLMEL---DLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIG-NLKNLI 279
+ K+L EL DLG N+L S +L ++L +N+ + + G +NL
Sbjct: 555 V--FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612
Query: 280 ELNVGSN 286
EL++ N
Sbjct: 613 ELDMRFN 619
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 196 VPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLN 255
VP L TN+ + L++NQL L LD+G N++ P +L L
Sbjct: 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 256 YMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
++L N L + NL EL++ SNS+
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 162 DLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLP 221
D S +LT +P ++ N+ LN++ N L + + L ++ + +N +S P
Sbjct: 10 DCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 222 QEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
+ L L L+L N L T TNL + L N + KNLI L
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
Query: 282 NVGSNSL 288
++ N L
Sbjct: 127 DLSHNGL 133
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%)
Query: 156 SKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQ 215
S+L LD+ N ++ P L L LN+ N L+ T TNL + L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 216 LSGPLPQEIGNLKNLMELDLGTNSL 240
+ KNL+ LDL N L
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGL 133
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
L+L+ N+L + L L++ N ++ P L LK + L +N+LS
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ NL EL L +NS+ + + NL + LS N
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL- 417
EDF++ +G G +G V+ A+ + FA+K L ++ E +VLS
Sbjct: 18 EDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 77
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H + ++ ++ +F + EY+ GG L ++ +
Sbjct: 78 HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS 112
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 148 IPP-EISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
IPP S KL+R+DLS+N+++ P LR+L L + N +T S L +L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
+ + L+ N+++ +L NL L L N L T L + M L++N F
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEI-GNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I S RL+L SN+L S+P + L L L++S+N + LT
Sbjct: 21 SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 206 LKNMGLSYNQLSGPLPQEI-GNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
L + L N+L LP + L L EL L TN L RLT+L + L N +
Sbjct: 78 LTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Query: 265 GGLLPQ 270
P+
Sbjct: 137 DCSCPR 142
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 10 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 68
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 69 KIIRLYDYEITDQYIYMV---MECGNIDLN 95
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 148 IPP-EISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
IPP S KL+R+DLS+N+++ P LR+L L + N +T S L +L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
+ + L+ N+++ +L NL L L N L T L + M L++N F
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 116
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 117 KIIRLYDYEITDQYIYMV---MECGNIDLN 143
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 11 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 69
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 70 KIIRLYDYEITDQYIYMV---MECGNIDLN 96
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN- 420
+ I IG+GG V++ +++A+K ++ E + + S+RNE L+++ +
Sbjct: 58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQT-LDSYRNEIAYLNKLQQHSD 116
Query: 421 -IVKLYGFCLHRKCMFLIYEYMEGGSLFCN 449
I++LY + + + ++++ ME G++ N
Sbjct: 117 KIIRLYDYEITDQYIYMV---MECGNIDLN 143
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQLPN-GKVFALK--KLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKL 424
IG G G V A+ + G+ A+K L + EL F NE ++ H N+V++
Sbjct: 53 IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLF-----NEVVIMRDYQHFNVVEM 107
Query: 425 YGFCLHRKCMFLIYEYMEGGSL---FCNLHNNEEAV 457
Y L + ++++ E+++GG+L + NEE +
Sbjct: 108 YKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQI 143
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ NQL+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKV------FALKKLHTSETEELAFIKSFRNEAQVLSQ 415
FDI IG G + +VYK V +KL SE + F+ EA+ L
Sbjct: 30 FDIE--IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQ------RFKEEAEXLKG 81
Query: 416 VLHRNIVKLY----GFCLHRKCMFLIYEYMEGGSL 446
+ H NIV+ Y +KC+ L+ E G+L
Sbjct: 82 LQHPNIVRFYDSWESTVKGKKCIVLVTELXTSGTL 116
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 17/187 (9%)
Query: 114 YGSFEEPVQLSQLNFSCFPNLENLTFQSFPL--AGSIPPEISALSKLQRLDLSSNRLTGS 171
Y S+ + +QL++ +F+ P+L+ L + L S P L L LDLS+N +
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 172 IPSEIGNLRNLVYLNISKNILT--------GTVPSTLGSLTNLKNMGLSYNQLSGPLPQE 223
+ L L L++ N L G L L++L + L N +P E
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVE 559
Query: 224 IGNLKNLMEL---DLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIG-NLKNLI 279
+ K+L EL DLG N+L S +L ++L +N+ + + G +NL
Sbjct: 560 V--FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 617
Query: 280 ELNVGSN 286
EL++ N
Sbjct: 618 ELDMRFN 624
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 196 VPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLN 255
VP L TN+ + L++NQL L LD+G N++ P +L L
Sbjct: 24 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 256 YMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
++L N L + NL EL++ SNS+
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 162 DLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLP 221
D S +LT +P ++ N+ LN++ N L + + L ++ + +N +S P
Sbjct: 15 DCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 71
Query: 222 QEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
+ L L L+L N L T TNL + L N + KNLI L
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 131
Query: 282 NVGSNSL 288
++ N L
Sbjct: 132 DLSHNGL 138
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%)
Query: 156 SKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQ 215
S+L LD+ N ++ P L L LN+ N L+ T TNL + L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 216 LSGPLPQEIGNLKNLMELDLGTNSL 240
+ KNL+ LDL N L
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGL 138
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
L+L+ N+L + L L++ N ++ P L LK + L +N+LS
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRN 262
+ NL EL L +NS+ + + NL + LS N
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG-TVPSTLGSLTNLKNMGL 211
S LS LQ+L L IG+L+ L LN++ N++ +P +LTNL+++ L
Sbjct: 99 SGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 212 SYNQL 216
S N++
Sbjct: 159 SSNKI 163
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPP-------EISALSKLQRLDLSSNRLTGSIPS 174
Q +LNF P +NL F + L S P + +LQ LDLS +
Sbjct: 15 QCMELNFYKIP--DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 175 EIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELD 234
+L +L L ++ N + L++L+ + L+ IG+LK L EL+
Sbjct: 73 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELN 132
Query: 235 LGTNSLIG-PIPSTLGRLTNLNYMSLSRN 262
+ N + +P LTNL ++ LS N
Sbjct: 133 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKL---------HTSETEELAFIKSFRNEAQVLSQV- 416
+G G +G V +A GK A+ K+ H E E L +E +++S +
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM------SELKIMSHLG 107
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV L G C H + +I EY G L L +E D
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETD 151
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ NQL+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ NQL+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 17/187 (9%)
Query: 114 YGSFEEPVQLSQLNFSCFPNLENLTFQSFPL--AGSIPPEISALSKLQRLDLSSNRLTGS 171
Y S+ + +QL++ +F+ P+L+ L + L S P L L LDLS+N +
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 172 IPSEIGNLRNLVYLNISKNILT--------GTVPSTLGSLTNLKNMGLSYNQLSGPLPQE 223
+ L L L++ N L G L L++L + L N +P E
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVE 564
Query: 224 IGNLKNLMEL---DLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIG-NLKNLI 279
+ K+L EL DLG N+L S +L ++L +N+ + + G +NL
Sbjct: 565 V--FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 622
Query: 280 ELNVGSN 286
EL++ N
Sbjct: 623 ELDMRFN 629
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 196 VPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLN 255
VP L TN+ + L++NQL L LD+G N++ P +L L
Sbjct: 29 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 256 YMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
++L N L + NL EL++ SNS+
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 162 DLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLP 221
D S +LT +P ++ N+ LN++ N L + + L ++ + +N +S P
Sbjct: 20 DCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP 76
Query: 222 QEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
+ L L L+L N L T TNL + L N + KNLI L
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 136
Query: 282 NVGSNSL 288
++ N L
Sbjct: 137 DLSHNGL 143
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%)
Query: 156 SKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQ 215
S+L LD+ N ++ P L L LN+ N L+ T TNL + L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 216 LSGPLPQEIGNLKNLMELDLGTNSL 240
+ KNL+ LDL N L
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGL 143
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
L+L+ N+L + L L++ N ++ P L LK + L +N+LS
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIG 273
+ NL EL L +NS+ + + NL + LS N GL ++G
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLG 149
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 17/104 (16%)
Query: 368 IGTGGYGSVYKAQLPN-GKVFALKKL---------HTSETEELAFIKSFRNEAQVLSQV- 416
+G G +G V +A GK A+ K+ H E E L +E +++S +
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM------SELKIMSHLG 107
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV L G C H + +I EY G L L +E D
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETD 151
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 154 ALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSY 213
L L+ L+L+ N++ L NL LN+S N+L S L + + L
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 214 NQLSGPLPQEIGNLKNLMELDLGTNSL--IGPIPS 246
N ++ Q L+ L LDL N+L I IPS
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 158 LQRLDLSSNRLTGSIPSEI-----GNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLS 212
L++L L N L + +E+ L +L L ++ N L P LT L+ + L+
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 213 YNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF 264
N+L+ ++ NL LD+ N L+ P P +L+ + ++ N F
Sbjct: 513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKF 559
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 147 SIPPEI-SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+PP + S L+ L+ L L+SNRLT +++ NL L+IS+N L P SL+
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV 551
Query: 206 L 206
L
Sbjct: 552 L 552
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 357 RATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKK----LHTSETEELAFIKSFRNEAQ 411
R T +F IG+G +GSV+K + +G ++A+K+ L S E+ A + + +
Sbjct: 4 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH--A 61
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
VL Q H ++V+ + M + EY GGSL + N
Sbjct: 62 VLGQ--HSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN 101
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 357 RATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKK----LHTSETEELAFIKSFRNEAQ 411
R T +F IG+G +GSV+K + +G ++A+K+ L S E+ A + + +
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH--A 63
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
VL Q H ++V+ + M + EY GGSL
Sbjct: 64 VLGQ--HSHVVRYFSAWAEDDHMLIQNEYCNGGSL 96
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTE 113
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 357 RATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKK----LHTSETEELAFIKSFRNEAQ 411
R T +F IG+G +GSV+K + +G ++A+K+ L S E+ A + + +
Sbjct: 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH--A 65
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
VL Q H ++V+ + M + EY GGSL
Sbjct: 66 VLGQ--HSHVVRYFSAWAEDDHMLIQNEYCNGGSL 98
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFA---LKKLHTSETEELAFIKSFRNEAQVLSQVL 417
+D +G+G + V K + G +A +KK T + + E +L ++
Sbjct: 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQ 72
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE 458
H N++ L+ ++ + LI E + GG LF L E E
Sbjct: 73 HPNVITLHEVYENKTDVILIGELVAGGELFDFLAEKESLTE 113
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 357 RATEDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKK----LHTSETEELAFIKSFRNEAQ 411
R T +F IG+G +GSV+K + +G ++A+K+ L S E+ A + + +
Sbjct: 6 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH--A 63
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
VL Q H ++V+ + M + EY GGSL
Sbjct: 64 VLGQ--HSHVVRYFSAWAEDDHMLIQNEYCNGGSL 96
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKL---------HTSETEELAFIKSFRNEAQVLSQV- 416
+G G +G V +A GK A+ K+ H E E L +E +++S +
Sbjct: 39 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM------SELKIMSHLG 92
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAV 457
H NIV L G C H + +I EY G L L EA+
Sbjct: 93 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAM 133
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ NQL+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEEL--AFIKSFRNEAQ 411
L+ + + ++ IG G YG V A + + A+K ++ ++ ++ ++ + E +
Sbjct: 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVR 80
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
++ ++ H NI +LY + + L+ E GG L L
Sbjct: 81 LMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKL 119
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++ +++ +G GG V+ A+ L + + A+K L + +F FR EAQ + +
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 418 HRNIVKLYGFCLHRKCM----FLIYEYMEGGSLFCNLH 451
H IV +Y +++ EY++G +L +H
Sbjct: 71 HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH 108
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEE-LAFIKS-------------F 406
D+ I + G + + + N K +ALKK S E+ F KS F
Sbjct: 32 DYRIIRTLNQGKFNKIILCEKDN-KFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDF 90
Query: 407 RNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NE Q+++ + + + G + +++IYEYME S+
Sbjct: 91 KNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSI 130
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E ++I +G G +G V K + + +A+K ++ + + R E ++L ++ H
Sbjct: 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILR-EVELLKKLDH 80
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
NI+KL+ +++ E GG LF + + E D A+ + V
Sbjct: 81 PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQV 130
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++ +++ +G GG V+ A+ L + + A+K L + +F FR EAQ + +
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 418 HRNIVKLYGFCLHRKCM----FLIYEYMEGGSLFCNLH 451
H IV +Y +++ EY++G +L +H
Sbjct: 71 HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH 108
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++ +++ +G GG V+ A+ L + + A+K L + +F FR EAQ + +
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 418 HRNIVKLYGFCLHRKCM----FLIYEYMEGGSLFCNLH 451
H IV +Y +++ EY++G +L +H
Sbjct: 71 HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH 108
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKV----FALKKLHTSETEELAFIKSFRNE 409
+++ TE I+ +G+G +G+VYK +P G+ A+K+L + + + K +E
Sbjct: 8 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKAN--KEILDE 64
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAV 457
A V++ V + ++ +L G CL + LI + M G L + +++ +
Sbjct: 65 AYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNI 111
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 356 IRATEDFDIRYCIGTGGYGSVYKAQLPNG-KVFALKKLHTSETEELAFIKSFRNEAQVLS 414
+ +++ I++ IG G YG VY A N K A+KK++ E+L K E +L+
Sbjct: 22 VHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRM-FEDLIDCKRILREITILN 80
Query: 415 QVLHRNIVKLYGFCL 429
++ I++LY +
Sbjct: 81 RLKSDYIIRLYDLII 95
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 368 IGTGGYGSV----YKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +G V Y + N G+ A+K L I + E ++L + H NIV
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN--HIADLKKEIEILRNLYHENIV 86
Query: 423 KLYGFCLHR--KCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKR--VNIVKAM 471
K G C + LI E++ GSL L N+ + L + V I K M
Sbjct: 87 KYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGM 139
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 362 FDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRN 420
F++ +G G VY+ Q K +ALK L + +++ R E VL ++ H N
Sbjct: 55 FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIV-----RTEIGVLLRLSHPN 109
Query: 421 IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVN 466
I+KL + L+ E + GG LF + E D A V
Sbjct: 110 IIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVK 155
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 97 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 153
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDL 178
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 56 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 112
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 113 SLLGICLRSEGSPLVVLPYMKHGDL 137
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 57 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 113
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 114 SLLGICLRSEGSPLVVLPYMKHGDL 138
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKL---------HTSETEELAFIKSFRNEAQVLSQV- 416
+G G +G V +A GK A+ K+ H E E L +E +++S +
Sbjct: 46 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM------SELKIMSHLG 99
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV L G C H + +I EY G L L EA +LD
Sbjct: 100 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEA-DLD 142
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 154 ALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKN-ILTGTVPSTLGSLTNLKNMGLS 212
+L L+ LDLS N L+ S G L +L YLN+ N T V S +LTNL+ + +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 213 YNQLSGPLPQ-EIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSL 259
+ + + + L +L EL++ SL +L + ++++++L
Sbjct: 158 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 205
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 368 IGTGGYGSV----YKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIV 422
+G G +G V Y + N G+ A+K L I + E ++L + H NIV
Sbjct: 17 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGN--HIADLKKEIEILRNLYHENIV 74
Query: 423 KLYGFCLHR--KCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKR--VNIVKAM 471
K G C + LI E++ GSL L N+ + L + V I K M
Sbjct: 75 KYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGM 127
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 37 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 93
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 94 SLLGICLRSEGSPLVVLPYMKHGDL 118
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
SIP ++ ++ LDLS+NR+T S++ NL L ++ N + + SL +L
Sbjct: 45 SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 207 KNMGLSYNQLSGPLPQEIGNLKNLMELD--------LGTNSLIGPIPS-TLGRLTNLN-Y 256
+++ LSYN LS L +L L+ LG SL + + R+ N++ +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162
Query: 257 MSLSRNMFGGL 267
+ R F GL
Sbjct: 163 TKIQRKDFAGL 173
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 39 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 95
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 96 SLLGICLRSEGSPLVVLPYMKHGDL 120
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-------VFALKKLHTSETEELAFIKSFRNEA 410
A ED + +G G +G VY+ N K V KK T + +E F +EA
Sbjct: 22 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKE-----KFMSEA 76
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
++ + H +IVKL G + + ++I E G L L N+ ++++
Sbjct: 77 VIMKNLDHPHIVKLIGI-IEEEPTWIIMELYPYGELGHYLERNKNSLKV 124
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 36 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 92
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 93 SLLGICLRSEGSPLVVLPYMKHGDL 117
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
+ F+ +GTG +G V + G +A+K L + +L I+ NE ++ V
Sbjct: 42 DQFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIQQAVNF 101
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNL 450
+VKL ++++ EY GG +F +L
Sbjct: 102 PFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHL 133
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNL 128
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 43 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 99
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 100 SLLGICLRSEGSPLVVLPYMKHGDL 124
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKL---------HTSETEELAFIKSFRNEAQVLSQV- 416
+G G +G V +A GK A+ K+ H E E L +E +++S +
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM------SELKIMSHLG 107
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
H NIV L G C H + +I EY G L L EA +LD
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEA-DLD 150
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 39 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 95
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 96 SLLGICLRSEGSPLVVLPYMKHGDL 120
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 30 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 86
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 87 SLLGICLRSEGSPLVVLPYMKHGDL 111
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 355 LIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKK--LHTSETEELAFIKSFRNEAQ 411
+++ TE I+ +G+G +G+VYK +P G+ + + E K +EA
Sbjct: 45 ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAY 103
Query: 412 VLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVE----LDWAKRVNI 467
V++ V + ++ +L G CL + LI + M G L + +++ + L+W V I
Sbjct: 104 VMASVDNPHVCRLLGICL-TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC--VQI 160
Query: 468 VKAM 471
K M
Sbjct: 161 AKGM 164
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNL 128
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 35 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 91
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 92 SLLGICLRSEGSPLVVLPYMKHGDL 116
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-------VFALKKLHTSETEELAFIKSFRNEA 410
A ED + +G G +G VY+ N K V KK T + +E F +EA
Sbjct: 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKE-----KFMSEA 64
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
++ + H +IVKL G + + ++I E G L L N+ ++++
Sbjct: 65 VIMKNLDHPHIVKLIGI-IEEEPTWIIMELYPYGELGHYLERNKNSLKV 112
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 364 IRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
+R C+ V Q K+ KKL + ++L EA++ + H NIV+
Sbjct: 38 VRRCV------KVLAGQEYAAKIINTKKLSARDHQKL------EREARICRLLKHPNIVR 85
Query: 424 LYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
L+ +LI++ + GG LF ++ E E D
Sbjct: 86 LHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEAD 122
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V+K KV A+K + E I+ + E VLSQ + K YG
Sbjct: 35 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYG 92
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +++I EY+ GGS
Sbjct: 93 SYLKDTKLWIIMEYLGGGS 111
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALK------KLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
+G G +GSV + L +LK KL S E I+ F +EA + H N+
Sbjct: 42 LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQRE---IEEFLSEAACMKDFSHPNV 98
Query: 422 VKLYGFCLH 430
++L G C+
Sbjct: 99 IRLLGVCIE 107
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 37 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 93
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 94 SLLGICLRSEGSPLVVLPYMKHGDL 118
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 38 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 94
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 95 SLLGICLRSEGSPLVVLPYMKHGDL 119
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G G+VY A + G+ A+++++ + + I NE V+ + + NIV
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII---NEILVMRENKNPNIVNYLD 84
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
L ++++ EY+ GGSL
Sbjct: 85 SYLVGDELWVVMEYLAGGSL 104
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 363 DIRYCIGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
D R +G GG+G V+ Q+ GK++A KKL+ ++ + E ++L++V R I
Sbjct: 189 DFR-VLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI 247
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEE 455
V L + + L+ M GG + +++N +E
Sbjct: 248 VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDE 281
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNL 128
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGK-------VFALKKLHTSETEELAFIKSFRNEA 410
A ED + +G G +G VY+ N K V KK T + +E F +EA
Sbjct: 6 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKE-----KFMSEA 60
Query: 411 QVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
++ + H +IVKL G + + ++I E G L L N+ ++++
Sbjct: 61 VIMKNLDHPHIVKLIGI-IEEEPTWIIMELYPYGELGHYLERNKNSLKV 108
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G G+VY A + G+ A+++++ + + I NE V+ + + NIV
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII---NEILVMRENKNPNIVNYLD 84
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
L ++++ EY+ GGSL
Sbjct: 85 SYLVGDELWVVMEYLAGGSL 104
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 36 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 92
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 93 SLLGICLRSEGSPLVVLPYMKHGDL 117
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V+K KV A+K + E I+ + E VLSQ + K YG
Sbjct: 30 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYG 87
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +++I EY+ GGS
Sbjct: 88 SYLKDTKLWIIMEYLGGGS 106
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 363 DIRYCIGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
D R +G GG+G V+ Q+ GK++A KKL+ ++ + E ++L++V R I
Sbjct: 189 DFR-VLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI 247
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEE 455
V L + + L+ M GG + +++N +E
Sbjct: 248 VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDE 281
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G G+VY A + G+ A+++++ + + I NE V+ + + NIV
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII---NEILVMRENKNPNIVNYLD 84
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
L ++++ EY+ GGSL
Sbjct: 85 SYLVGDELWVVMEYLAGGSL 104
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTS-----ETEELAFIKSFRNEAQVLSQVLHRNIV 422
IG G +G VY L + KK+H + ++ + F E ++ H N++
Sbjct: 33 IGRGHFGCVYHGTLLDNDG---KKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVL 89
Query: 423 KLYGFCLHRK-CMFLIYEYMEGGSL 446
L G CL + ++ YM+ G L
Sbjct: 90 SLLGICLRSEGSPLVVLPYMKHGDL 114
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 363 DIRYCIGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
D R +G GG+G V+ Q+ GK++A KKL+ ++ + E ++L++V R I
Sbjct: 189 DFR-VLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI 247
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEE 455
V L + + L+ M GG + +++N +E
Sbjct: 248 VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDE 281
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 147 SIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNL 206
SIP ++ ++ LDLS+NR+T S++ NL L ++ N + + SL +L
Sbjct: 19 SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 207 KNMGLSYNQLS 217
+++ LSYN LS
Sbjct: 77 EHLDLSYNYLS 87
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G G+VY A + G+ A+++++ + + I NE V+ + + NIV
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII---NEILVMRENKNPNIVNYLD 85
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
L ++++ EY+ GGSL
Sbjct: 86 SYLVGDELWVVMEYLAGGSL 105
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLP-NGKVFALKKL-HTSETEELAFIKSFRNEAQVLSQVLH 418
DF IG+GG+G V+KA+ +GK + ++++ + +E E E + L+++ H
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAE--------REVKALAKLDH 64
Query: 419 RNIVKLYG 426
NIV G
Sbjct: 65 VNIVHYNG 72
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNL 128
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 363 DIRYCIGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
D R +G GG+G V+ Q+ GK++A KKL+ ++ + E ++L++V R I
Sbjct: 189 DFR-VLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI 247
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEE 455
V L + + L+ M GG + +++N +E
Sbjct: 248 VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDE 281
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIIHLLGACTQDGPLYVIVEYASKGNL 128
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G G+VY A + G+ A+++++ + + I NE V+ + + NIV
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELII---NEILVMRENKNPNIVNYLD 85
Query: 427 FCLHRKCMFLIYEYMEGGSL 446
L ++++ EY+ GGSL
Sbjct: 86 SYLVGDELWVVMEYLAGGSL 105
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 93
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 94 KNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E ++I +G G +G V K + + +A+K ++ + + R E ++L ++ H
Sbjct: 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILR-EVELLKKLDH 80
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
NI+KL+ +++ E GG LF + + E D A+ + V
Sbjct: 81 PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQV 130
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 154 ALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKN-ILTGTVPSTLGSLTNLKNMGLS 212
+L L+ LDLS N L+ S G L +L YLN+ N T V S +LTNL+ + +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 213 YNQLSGPLPQ-EIGNLKNLMELDLGTNSLIGPIPSTLGRLTNLNYMSL 259
+ + + + L +L EL++ SL +L + ++++++L
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V+K KV A+K + E I+ + E VLSQ + K YG
Sbjct: 15 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYG 72
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +++I EY+ GGS
Sbjct: 73 SYLKDTKLWIIMEYLGGGS 91
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 355 LIRATEDFDIRYC--IGTGGYGSVYKA-QLPNGK----VFALKKLHTSETEELAFIKSFR 407
L+R ++ ++R +G+G +G+VYK +P+G+ A+K L + + + K
Sbjct: 10 LLRILKETELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKAN--KEIL 67
Query: 408 NEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
+EA V++ V + +L G CL + L+ + M G L ++ N
Sbjct: 68 DEAYVMAGVGSPYVSRLLGICLT-STVQLVTQLMPYGCLLDHVREN 112
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 101 KNIITLLGACTQDGPLYVIVEYASKGNL 128
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E ++I +G G +G V K + + +A+K ++ + + R E ++L ++ H
Sbjct: 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILR-EVELLKKLDH 80
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
NI+KL+ +++ E GG LF + + E D A+ + V
Sbjct: 81 PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQV 130
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V+K KV A+K + E I+ + E VLSQ + K YG
Sbjct: 15 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA--EDEIEDIQQEITVLSQCDSPYVTKYYG 72
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +++I EY+ GGS
Sbjct: 73 SYLKDTKLWIIMEYLGGGS 91
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL- 417
EDF + +G G +G V+ A+ + FA+K L ++ E +VLS
Sbjct: 17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 76
Query: 418 HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHN 452
H + ++ ++ +F + EY+ GG L ++ +
Sbjct: 77 HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS 111
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPN-GKVFAL-----KKLHTSETEELAFIKSFRNEAQVLS 414
DF + IG GG+G VY + + GK++A+ K++ + E LA NE +LS
Sbjct: 189 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLAL-----NERIMLS 243
Query: 415 QVLHRN----IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
V + + Y F K F++ + M GG L +L +
Sbjct: 244 LVSTGDCPFIVCMSYAFHTPDKLSFIL-DLMNGGDLHYHLSQH 285
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPN-GKVFAL-----KKLHTSETEELAFIKSFRNEAQVLS 414
DF + IG GG+G VY + + GK++A+ K++ + E LA NE +LS
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLAL-----NERIMLS 244
Query: 415 QVLHRN----IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
V + + Y F K F++ + M GG L +L +
Sbjct: 245 LVSTGDCPFIVCMSYAFHTPDKLSFIL-DLMNGGDLHYHLSQH 286
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 345 NYDGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFI 403
++ GR +ED+ + ED +G G + V L + +A+K + ++ I
Sbjct: 5 SFSGR--FEDVYQLQEDV-----LGEGAHARVQTCINLITSQEYAVKII----EKQPGHI 53
Query: 404 KS--FRNEAQVLSQVL-HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
+S FR E ++L Q HRN+++L F +L++E M GGS+ ++H EL+
Sbjct: 54 RSRVFR-EVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELE 112
Query: 461 WAKRVNIVKA 470
+ V V +
Sbjct: 113 ASVVVQDVAS 122
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 345 NYDGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFI 403
++ GR +ED+ + ED +G G + V L + +A+K + ++ I
Sbjct: 5 SFSGR--FEDVYQLQEDV-----LGEGAHARVQTCINLITSQEYAVKII----EKQPGHI 53
Query: 404 KS--FRNEAQVLSQVL-HRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
+S FR E ++L Q HRN+++L F +L++E M GGS+ ++H EL+
Sbjct: 54 RSRVFR-EVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELE 112
Query: 461 WAKRVNIVKA 470
+ V V +
Sbjct: 113 ASVVVQDVAS 122
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 31/178 (17%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPS------------E 175
F+ P+L L L LSKL+ L L +N + SIPS +
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLD 137
Query: 176 IGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLM---E 232
+G L+ L Y IS+ G L NL+ + L L ++I NL L+ E
Sbjct: 138 LGELKRLEY--ISEAAFEG--------LVNLRYLNLGMCNL-----KDIPNLTALVRLEE 182
Query: 233 LDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSLIG 290
L+L N L P + LT+L + L + +LK+L ELN+ N+L+
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 161 LDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPL 220
L+L N + +LR+L L +SKN++ L +L + L N+L+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 221 PQEIGNLKNLMELDLGTNSLIGPIPS------------TLGRLTNLNYMSLSRNMFGGLL 268
Q L L EL L N I IPS LG L L Y+S + F GL+
Sbjct: 100 TQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKRLEYISEA--AFEGLV 156
Query: 269 PQEIGNLKNLIELNVG 284
NL LN+G
Sbjct: 157 --------NLRYLNLG 164
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 93
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNE 454
+NI+ L G C +++I EY G+L L E
Sbjct: 94 KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARE 129
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPN-GKVFAL-----KKLHTSETEELAFIKSFRNEAQVLS 414
DF + IG GG+G VY + + GK++A+ K++ + E LA NE +LS
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLAL-----NERIMLS 244
Query: 415 QVLHRN----IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
V + + Y F K F++ + M GG L +L +
Sbjct: 245 LVSTGDCPFIVCMSYAFHTPDKLSFIL-DLMNGGDLHYHLSQH 286
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 361 DFDIRYCIGTGGYGSVYKAQLPN-GKVFAL-----KKLHTSETEELAFIKSFRNEAQVLS 414
DF + IG GG+G VY + + GK++A+ K++ + E LA NE +LS
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLAL-----NERIMLS 244
Query: 415 QVLHRN----IVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNN 453
V + + Y F K F++ + M GG L +L +
Sbjct: 245 LVSTGDCPFIVCMSYAFHTPDKLSFIL-DLMNGGDLHYHLSQH 286
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 93
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 94 KNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 78
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 79 KNIINLLGACTQDGPLYVIVEYASKGNL 106
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 29 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 86
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 87 KNIINLLGACTQDGPLYVIVEYASKGNL 114
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
IG G +G V+K +V A+K + E E+ + + E VLSQ + K YG
Sbjct: 31 IGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEI--EDIQQEITVLSQCDSSYVTKYYG 88
Query: 427 FCLHRKCMFLIYEYMEGGS 445
L +++I EY+ GGS
Sbjct: 89 SYLKGSKLWIIMEYLGGGS 107
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 368 IGTGGYGSVYKA--QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
+G G +GSV + ++ ++ K+ TE+ A + EAQ++ Q+ + IV+L
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK-ADTEEMMREAQIMHQLDNPYIVRLI 402
Query: 426 GFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAV 457
G C + + L+ E GG L L E +
Sbjct: 403 GVC-QAEALMLVMEMAGGGPLHKFLVGKREEI 433
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 93
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 94 KNIINLLGACTQDGPLYVIVEYASKGNL 121
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 25 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 82
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 83 KNIINLLGACTQDGPLYVIVEYASKGNL 110
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 28 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 85
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 86 KNIINLLGACTQDGPLYVIVEYASKGNL 113
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 146
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNL 174
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ PN A+K L + TE+ + +E +++ + H
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK--DLSDLISEMEMMKMIGKH 134
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 135 KNIINLLGACTQDGPLYVIVEYASKGNL 162
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ N L+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 31/177 (17%)
Query: 128 FSCFPNLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPS------------E 175
F+ P+L L L LSKL+ L L +N + SIPS +
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLD 137
Query: 176 IGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLM---E 232
+G L+ L Y IS+ G L NL+ + L L ++I NL L+ E
Sbjct: 138 LGELKRLEY--ISEAAFEG--------LVNLRYLNLGMCNL-----KDIPNLTALVRLEE 182
Query: 233 LDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSLI 289
L+L N L P + LT+L + L + +LK+L ELN+ N+L+
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 359 TEDFDIRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
++ +++ +G GG V+ A+ L + A+K L + +F FR EAQ + +
Sbjct: 11 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70
Query: 418 HRNIVKLYGFCLHRKCM----FLIYEYMEGGSLFCNLH 451
H IV +Y +++ EY++G +L +H
Sbjct: 71 HPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIVH 108
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 368 IGTGGYGSVYKA--QLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLY 425
+G G +GSV + ++ ++ K+ TE+ A + EAQ++ Q+ + IV+L
Sbjct: 18 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK-ADTEEMMREAQIMHQLDNPYIVRLI 76
Query: 426 GFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAV 457
G C + + L+ E GG L L E +
Sbjct: 77 GVC-QAEALMLVMEMAGGGPLHKFLVGKREEI 107
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 35 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 92
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 93 KNIINLLGACTQDGPLYVIVEYASKGNL 120
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 368 IGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIK---------SFRNEAQVLSQVLH 418
IG G +G VYK + N HT E + I + E VLSQ
Sbjct: 27 IGKGSFGEVYKG-IDN---------HTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDS 76
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGS 445
I + +G L +++I EY+ GGS
Sbjct: 77 PYITRYFGSYLKSTKLWIIMEYLGGGS 103
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 354 DLIRATEDFD---IRYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNE 409
DL+ ++D R +G G YG VY + L N A+K++ ++ + + E
Sbjct: 13 DLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSR---YSQPLHEE 69
Query: 410 AQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+ + H+NIV+ G + + E + GGSL
Sbjct: 70 IALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSL 106
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 32 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 89
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 90 KNIINLLGACTQDGPLYVIVEYASKGNL 117
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 362 FDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNI 421
F + +G+G +G V+ + + + + K + ++ ++ E +VL + H NI
Sbjct: 24 FIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVP-MEQIEAEIEVLKSLDHPNI 82
Query: 422 VKLYGFCLHRKCMFLIYEYMEGGSL 446
+K++ M+++ E EGG L
Sbjct: 83 IKIFEVFEDYHNMYIVMETCEGGEL 107
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 30 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 87
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I EY G+L
Sbjct: 88 KNIINLLGACTQDGPLYVIVEYASKGNL 115
>pdb|4DDQ|A Chain A, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|B Chain B, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|C Chain C, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|D Chain D, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|E Chain E, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|F Chain F, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
Length = 502
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 351 VYEDLIRATEDFDIRYCI--GTGGYGSV 376
VYE ++R +DF+ RY + G G +GSV
Sbjct: 86 VYESMVRMAQDFNYRYMLVDGHGNFGSV 113
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ N L+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N+L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ N L+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N+L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 134 LENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILT 193
LE L S L +L K+ +DLS N LT + +L+ +YLN++ N +
Sbjct: 475 LEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKG-IYLNLAANSIN 533
Query: 194 GTVPSTLGSLTNLKNMGLSYNQL 216
P L L+ + LS+N L
Sbjct: 534 IISPRLLPILSQQSTINLSHNPL 556
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 122 QLSQLNFSCFPNLENLTFQSFPLAGSIPPE------ISALSKLQRLDLSSNRLTGS--IP 173
QL Q++ + FP+L +L + G++ + L LQ LDLS N + S
Sbjct: 312 QLCQISAANFPSLTHLYIR-----GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS 366
Query: 174 SEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQE-IGNLKNLME 232
++ NL +L LN+S N G L+ + L++ +L PQ NL L
Sbjct: 367 LQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 233 LDLGTNSLIGPIPSTLGRLTNLNYMSLSRNMF--GGL----LPQEIGNLKNLI 279
L+L L L L L +++L N F G + L Q +G+L+ LI
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLI 479
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ N L+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N+L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 133
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ N L+ LP + N L+NL L L NSL
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 61 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N+L L L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 173 NLDTLLLQEN 182
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 40 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 90
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLN---ISK 189
+L + QS PL G P ++ L D+S NRLT S+P +G LR L L +
Sbjct: 84 DLSHNQLQSLPLLGQTLPALTVL------DVSFNRLT-SLP--LGALRGLGELQELYLKG 134
Query: 190 NILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGN-LKNLMELDLGTNSL 240
N L P L L+ + L+ N L+ LP + N L+NL L L NSL
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 185
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 133 NLENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNIL 192
NL+ + G++P L LDLS N+L S+P L L L++S N L
Sbjct: 62 NLDRCELTKLQVDGTLP-------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 113
Query: 193 TGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLT 252
T L L L+ + L N+L P + L +L L N+L L L
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 173
Query: 253 NLNYMSLSRN 262
NL+ + L N
Sbjct: 174 NLDTLLLQEN 183
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 135 ENLTFQSFPLAGSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTG 194
ENL + +F LA +P L R +L+ ++ G++P L L++S N L
Sbjct: 41 ENLLY-TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ- 91
Query: 195 TVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTNL 254
++P +L L + +S+N+L+ + L L EL L N L P L L
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 255 NYMSLSRNMFGGLLPQEIGNLKNLIELNVGSNSL 288
+SL+ N L + L+NL L + NSL
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 146 GSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I + Q L L NR+T P L L L++ N LT LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 206 LKNMGLSYNQLSGPLPQEIGNLKNLMEL 233
L + L+ NQL NL++L +
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 358 ATEDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVL 417
D + C+G G YG V++ V K+ +S E KS+ E ++ + V+
Sbjct: 6 VARDITLLECVGKGRYGEVWRGSWQGENVAV--KIFSSRDE-----KSWFRETELYNTVM 58
Query: 418 --HRNIVKLYGFCLHRKC----MFLIYEYMEGGSLF 447
H NI+ + + ++LI Y E GSL+
Sbjct: 59 LRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLY 94
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 365 RYCIGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVK 423
R +G G YG VY + L N A+K++ ++ + + E + + H+NIV+
Sbjct: 13 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSR---YSQPLHEEIALHKHLKHKNIVQ 69
Query: 424 LYGFCLHRKCMFLIYEYMEGGSL 446
G + + E + GGSL
Sbjct: 70 YLGSFSENGFIKIFMEQVPGGSL 92
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 347 DGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSE--------T 397
D +++ED+ E IG G + V + G+ FA+K + ++ T
Sbjct: 17 DDDVLFEDVYELCE------VIGKGAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLST 70
Query: 398 EELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
E+L + EA + + H +IV+L +++++E+M+G L
Sbjct: 71 EDL------KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADL 113
>pdb|3SSM|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSN|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSO|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|E Chain E, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|F Chain F, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
Length = 419
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 368 IGTGGY-------GS--VYKAQLPNGKVFALKKLHTSETEELAF--IKSFRNEAQVLSQV 416
IG GGY GS ++K+ P G+++ L + S +EL I+ +N+A+ L ++
Sbjct: 223 IGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRI 282
Query: 417 LHR 419
R
Sbjct: 283 ARR 285
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 22/95 (23%)
Query: 364 IRYCIGTGGYGSV-----YKAQLPNGKVFA----LKK--LHTSETEELAFIKSFRNEAQV 412
IR +G G +G V YK Q F LKK +H E++++K R
Sbjct: 13 IRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLR----- 67
Query: 413 LSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
H +I+KLY + ++ EY GG LF
Sbjct: 68 -----HPHIIKLYDVITTPTDIVMVIEYA-GGELF 96
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 360 EDFDIRYCIGTGGYGSVYK-AQLPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLH 418
E + I +G G +G V++ + + K + K + T+++ + E +L+ H
Sbjct: 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLV----KKEISILNIARH 60
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELDWAKRVNIV 468
RNI+ L+ + + +I+E++ G +F + N A EL+ + V+ V
Sbjct: 61 RNILHLHESFESMEELVMIFEFISGLDIFERI--NTSAFELNEREIVSYV 108
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 26/120 (21%)
Query: 174 SEIGNLRNLVYL-NISKNILTGTVPSTLGSLTNLKNMG---LSYNQLSGPLP-------- 221
S+I +++ + YL N++K L G + + LTNLKN+G L N++
Sbjct: 53 SDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLK 112
Query: 222 ---------QEIGNLKNLMELD---LGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLP 269
+I L +L +L+ LG N + + L RLT L+ +SL N ++P
Sbjct: 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 170
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 158 LQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLSYNQLS 217
L+ LDLSSN L +L+ L L + N + + + L+ + LS NQ+S
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 218 GPLPQEI---GN-LKNLMELDLGTNSL 240
P E+ GN L LM LDL +N L
Sbjct: 150 R-FPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 368 IGTGGYGSVYKA-QLPNGKVFALKKL---------HTSETEELAFIKSFRNEAQVLSQV- 416
+G G +G V +A GK A+ K+ H E E L +E +++S +
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALM------SELKIMSHLG 107
Query: 417 LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
H NIV L G C H + +I EY G L
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLL 138
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 368 IGTGGYGSVYKAQ-LPNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G GG+ V + L +G +ALK++ E ++ + + EA + H NI++L
Sbjct: 37 LGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDR---EEAQREADMHRLFNHPNILRLVA 93
Query: 427 FCLHRK 432
+CL +
Sbjct: 94 YCLRER 99
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I Y G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVAYASKGNL 128
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 186 NISKNILTGTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIP 245
++SK+ + + S T+L+ + L+ N+++ L +L EL L TN L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPD 340
Query: 246 STLGRLTNLNYMSLSRN 262
RLT+L + L N
Sbjct: 341 GIFDRLTSLQKIWLHTN 357
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 360 EDFDIRYCIGTGGYGSVYKAQLPNGKVFALKKLHTSETEELAFIK---------SFRNEA 410
E+ + +G+G +G V N + + K S + +K + +E
Sbjct: 45 ENLEFGKVLGSGAFGKVM-----NATAYGISKTGVSIQVAVKMLKEKADSSEREALMSEL 99
Query: 411 QVLSQV-LHRNIVKLYGFCLHRKCMFLIYEYMEGGSLFCNLHNNEEAVELD 460
++++Q+ H NIV L G C ++LI+EY G L L + E D
Sbjct: 100 KMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSED 150
>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands
pdb|3GOK|B Chain B, Binding Site Mapping Of Protein Ligands
pdb|3GOK|C Chain C, Binding Site Mapping Of Protein Ligands
pdb|3GOK|D Chain D, Binding Site Mapping Of Protein Ligands
pdb|3GOK|E Chain E, Binding Site Mapping Of Protein Ligands
pdb|3GOK|F Chain F, Binding Site Mapping Of Protein Ligands
pdb|3GOK|G Chain G, Binding Site Mapping Of Protein Ligands
pdb|3GOK|H Chain H, Binding Site Mapping Of Protein Ligands
pdb|3GOK|I Chain I, Binding Site Mapping Of Protein Ligands
pdb|3GOK|J Chain J, Binding Site Mapping Of Protein Ligands
pdb|3GOK|K Chain K, Binding Site Mapping Of Protein Ligands
pdb|3GOK|L Chain L, Binding Site Mapping Of Protein Ligands
Length = 334
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 45 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 104
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 105 LIVMECLDGGELFSRIQDR 123
>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2
pdb|1KWP|B Chain B, Crystal Structure Of Mapkap2
pdb|1NY3|A Chain A, Crystal Structure Of Adp Bound To Map Kap Kinase 2
Length = 400
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 75 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 135 LIVMECLDGGELFSRIQDR 153
>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor
6-(5-(2-Aminopyrimidin-4-Ylamino)-2-
Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide
Length = 320
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 29 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 88
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 89 LIVMECLDGGELFSRIQDR 107
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 351 VYEDLIRATEDFDIRYCIGTGGYG----SVYKAQLPNGKVFALKKLHTSETEELAFIKSF 406
++ + I+ T+ ++++ IG G Y ++KA V + K TEE+ + +
Sbjct: 13 LHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRY 72
Query: 407 RNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSLF 447
H NI+ L K ++++ E M+GG L
Sbjct: 73 GQ---------HPNIITLKDVYDDGKYVYVVTELMKGGELL 104
>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
Length = 406
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 81 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 140
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 141 LIVMECLDGGELFSRIQDR 159
>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|B Chain B, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|C Chain C, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|D Chain D, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|E Chain E, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|F Chain F, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|G Chain G, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|H Chain H, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|I Chain I, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|J Chain J, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|K Chain K, Mk2 Kinase Bound To Compound 5b
pdb|3R2B|L Chain L, Mk2 Kinase Bound To Compound 5b
Length = 318
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 29 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 88
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 89 LIVMECLDGGELFSRIQDR 107
>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal
Form-1, Soaking)
pdb|2JBP|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|B Chain B, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|C Chain C, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|D Chain D, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|E Chain E, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|F Chain F, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|G Chain G, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|H Chain H, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|I Chain I, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|J Chain J, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|K Chain K, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|L Chain L, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
Length = 326
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 37 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 96
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 97 LIVMECLDGGELFSRIQDR 115
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 360 EDFDIRYCIGTGGYGSVYKA-QLPNGKVFALK---KLHTSETEELAFIKSFRNEAQVLSQ 415
EDF +G G + +V A +L + +A+K K H + ++ ++ R+ V+S+
Sbjct: 37 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERD---VMSR 93
Query: 416 VLHRNIVKLYGFCLH 430
+ H VKLY FC
Sbjct: 94 LDHPFFVKLY-FCFQ 107
>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With
A Potent 3-Aminopyrazole Atp Site Inhibitor
pdb|3M2W|A Chain A, Crystal Structure Of Mapkak Kinase 2 (Mk2) Complexed With
A Spiroazetidine-Tetracyclic Atp Site Inhibitor
pdb|3M42|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With
A Tetracyclic Atp Site Inhibitor
Length = 299
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 31 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 91 LIVMECLDGGELFSRIQDR 109
>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap
Kinase-2
Length = 325
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 36 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 95
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 96 LIVMECLDGGELFSRIQDR 114
>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1
pdb|3R30|A Chain A, Mk2 Kinase Bound To Compound 2
Length = 319
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 30 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 89
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 90 LIVMECLDGGELFSRIQDR 108
>pdb|2OZA|A Chain A, Structure Of P38alpha Complex
Length = 356
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 31 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 91 LIVMECLDGGELFSRIQDR 109
>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|B Chain B, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|C Chain C, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|D Chain D, Structure Of Mk2 Complexed With Compound 76
pdb|3KC3|A Chain A, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|B Chain B, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|C Chain C, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|D Chain D, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|E Chain E, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|F Chain F, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|G Chain G, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|H Chain H, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|I Chain I, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|J Chain J, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|K Chain K, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|L Chain L, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3A2C|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|B Chain B, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|C Chain C, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|D Chain D, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|E Chain E, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|F Chain F, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|G Chain G, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|H Chain H, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|I Chain I, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|J Chain J, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|K Chain K, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|L Chain L, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
Length = 324
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 35 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 94
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 95 LIVMECLDGGELFSRIQDR 113
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G GG+G V Q+ GK++A KKL ++ NE Q+L +V R +V L
Sbjct: 192 LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAY 251
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEA 456
+ + L+ M GG L ++++ +A
Sbjct: 252 AYETKDALCLVLTLMNGGDLKFHIYHMGQA 281
>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To
Mapkap Kinase-2
pdb|3FYJ|X Chain X, Crystal Structure Of An Optimzied Benzothiophene Inhibitor
Bound To Mapkap Kinase-2 (Mk-2)
pdb|3FYK|X Chain X, Crystal Structure Of A Benzthiophene Lead Bound To Mapkap
Kinase-2 (Mk-2)
Length = 327
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 383 NGKVFALKKLHTSETEELAFIKS---FRNEAQV---LSQVLH-RNIVKLY-GFCLHRKCM 434
NGKV + T E L ++ R E ++ SQ H IV +Y RKC+
Sbjct: 31 NGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90
Query: 435 FLIYEYMEGGSLFCNLHNN 453
++ E ++GG LF + +
Sbjct: 91 LIVMECLDGGELFSRIQDR 109
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 368 IGTGGYGSVYKAQL-------PNGKV-FALKKLHTSETEELAFIKSFRNEAQVLSQV-LH 418
+G G +G V A+ P V A+K L TE+ + +E +++ + H
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK--DLSDLVSEMEMMKMIGKH 100
Query: 419 RNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
+NI+ L G C +++I Y G+L
Sbjct: 101 KNIINLLGACTQDGPLYVIVGYASKGNL 128
>pdb|1OF4|A Chain A, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module, Tmcbm27
pdb|1OH4|A Chain A, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module
Length = 179
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 77 WWDSSFWTANYSSDHCKWIGFTCNSAGSI-IGLHLSRDYGS------FEEPVQLSQLNFS 129
WW+S W A + S +W G N A + + L D+ FE + L +
Sbjct: 25 WWNSGTWQAEFGSPDIEWNGEVGNGALQLNVKLPGKSDWEEVRVARKFERLSECEILEYD 84
Query: 130 CF-PNLENLTFQSFPLA 145
+ PN+E L + P A
Sbjct: 85 IYIPNVEGLKGRLRPYA 101
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 368 IGTGGYGSVYKAQL-PNGKVFALKKLHTSETEELAFIKSFRNEAQVLSQVLHRNIVKLYG 426
+G GG+G V Q+ GK++A KKL ++ NE Q+L +V R +V L
Sbjct: 192 LGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAY 251
Query: 427 FCLHRKCMFLIYEYMEGGSLFCNLHNNEEA 456
+ + L+ M GG L ++++ +A
Sbjct: 252 AYETKDALCLVLTLMNGGDLKFHIYHMGQA 281
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 194 GTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTN 253
+VP+ + + T + + L NQ++ P L L LDL N L +LT
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 254 LNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
L +SL+ N + NLK+L +
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 146 GSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I + Q L L N++T P L L L++ N LT LT
Sbjct: 30 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 206 LKNMGLSYNQLSGPLPQEIGNLKNLMEL 233
L + L+ NQL NLK+L +
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 347 DGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSE--------T 397
D +++ED+ E IG G + V + G+ FA+K + ++ T
Sbjct: 17 DDDVLFEDVYELCE------VIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLST 70
Query: 398 EELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
E+L + EA + + H +IV+L +++++E+M+G L
Sbjct: 71 EDL------KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADL 113
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 347 DGRIVYEDLIRATEDFDIRYCIGTGGYGSVYKA-QLPNGKVFALKKLHTSE--------T 397
D +++ED+ E IG G + V + G+ FA+K + ++ T
Sbjct: 19 DDDVLFEDVYELCE------VIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLST 72
Query: 398 EELAFIKSFRNEAQVLSQVLHRNIVKLYGFCLHRKCMFLIYEYMEGGSL 446
E+L + EA + + H +IV+L +++++E+M+G L
Sbjct: 73 EDL------KREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADL 115
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 194 GTVPSTLGSLTNLKNMGLSYNQLSGPLPQEIGNLKNLMELDLGTNSLIGPIPSTLGRLTN 253
+VP+ + + T + + L NQ++ P L L LDL N L +LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 254 LNYMSLSRNMFGGLLPQEIGNLKNLIEL 281
L +SL+ N + NLK+L +
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 146 GSIPPEISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTN 205
S+P I + Q L L N++T P L L L++ N LT LT
Sbjct: 22 ASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 206 LKNMGLSYNQLSGPLPQEIGNLKNLMEL 233
L + L+ NQL NLK+L +
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 26/120 (21%)
Query: 174 SEIGNLRNLVYL-NISKNILTGTVPSTLGSLTNLKNMG---LSYNQLSGPLP-------- 221
S+I +++ + YL N++K L G + + LTNLKN+G L N++
Sbjct: 51 SDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLK 110
Query: 222 ---------QEIGNLKNLMELD---LGTNSLIGPIPSTLGRLTNLNYMSLSRNMFGGLLP 269
+I L +L +L+ LG N + + L RLT L+ +SL N ++P
Sbjct: 111 SLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|1OF3|A Chain A, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module, Tmcbm27
pdb|1OF3|B Chain B, Structural And Thermodynamic Dissection Of Specific Mannan
Recognition By A Carbohydrate-Binding Module, Tmcbm27
Length = 179
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 77 WWDSSFWTANYSSDHCKWIGFTCNSAGSI-IGLHLSRDYGS------FEEPVQLSQLNFS 129
WW+S W A + S +W G N A + + L D+ FE + L +
Sbjct: 25 WWNSGTWQAEFGSPDIEWNGEVGNGALQLNVKLPGKSDWEEVRVARKFERLSECEILEYD 84
Query: 130 CF-PNLENLTFQSFPLA 145
+ PN+E L + P A
Sbjct: 85 IYIPNVEGLKGRLRPYA 101
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 34/142 (23%)
Query: 152 ISALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYL-NISKNILTGTVPSTLGSLTNLKNMG 210
I L L L+LS+N++T P + YL N++K L G + + L NLKN+G
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--------IQYLPNVTKLFLNGNKLTDIKPLANLKNLG 113
Query: 211 ---LSYNQLSGPLP-----------------QEIGNLKNLMELD---LGTNSLIGPIPST 247
L N++ +I L +L +L+ LG N + +
Sbjct: 114 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITV 171
Query: 248 LGRLTNLNYMSLSRNMFGGLLP 269
L RLT L+ +SL N ++P
Sbjct: 172 LSRLTKLDTLSLEDNQISDIVP 193
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 95 IGFTCNSAGSIIGLHLSRDYGSFEE-PV-QLSQLNFSCFPNLENLTFQSFPLAGSIPPEI 152
I CN I G L D+ + + PV + Q+ + + NL ++FP+ S+
Sbjct: 278 INVACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-----KTFPVETSL---- 326
Query: 153 SALSKLQRLDLSSNRLTGSIPSEIGNLRNLVYLNISKNILTGTVPSTLGSLTNLKNMGLS 212
KL L+ N+L G +P+ G+ L LN++ N +T + G ++N+ +
Sbjct: 327 QKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 213 YNQL 216
+N+L
Sbjct: 386 HNKL 389
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 368 IGTGGYGSVYKAQLPN-GKVFALKKLHTSETEELAFIKSFR---NEAQVLSQVLHRNIVK 423
+G G +V++ + G +FA+K + ++F++ E +VL ++ H+NIVK
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNN-----ISFLRPVDVQMREFEVLKKLNHKNIVK 71
Query: 424 LYGFCLH--RKCMFLIYEYMEGGSLFCNLHNNEEAVEL 459
L+ + LI E+ GSL+ L A L
Sbjct: 72 LFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,188,801
Number of Sequences: 62578
Number of extensions: 528889
Number of successful extensions: 2651
Number of sequences better than 100.0: 810
Number of HSP's better than 100.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 1049
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)