BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042934
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 155/283 (54%), Gaps = 10/283 (3%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
T+++ NPS+ LLSIG G+ RKSFID SIR+AR YGF GLD W
Sbjct: 59 TVQRRNPSVKTLLSIGGGI-ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWE 117
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS--YLLNSRQ 118
P+++T++ N G L EWR A + A+ SS + +L+L A YS S Y +++
Sbjct: 118 YPSSATEMTNFGTLLREWRSA---VVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVA 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVMC 178
+L+WV+ + +Y P + T PPAAL+ S+ G S D ++WI+ GLPA K V+
Sbjct: 175 SSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAG--PSGDAGTRSWIQAGLPAKKAVLG 232
Query: 179 LPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTYEVN 238
P+YGYAWRL + A G A+ G + Y +I I G +YNST +
Sbjct: 233 FPYYGYAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNG--ATTVYNSTVVGD 290
Query: 239 YCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
YC W G+DD +++ KV YAK++ L GYF W V DD++
Sbjct: 291 YCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNS 333
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 173 bits (439), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 152/288 (52%), Gaps = 16/288 (5%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
T++++NPS+ LSI G RKSFID SIR+AR GF GLD W
Sbjct: 58 TVQRKNPSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQ 116
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPAN--SYLLNSRQ 118
P ++ D+ N+G L +EWR A EA+NS R + L+LTA SP N +Y + S
Sbjct: 117 YPLSAADMTNLGTLLNEWR-TAINTEARNSGR--AALLLTAAVSNSPRVNGLNYPVESLA 173
Query: 119 RNLNWVHAVTASYYEPV-STNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVM 177
RNL+W++ + +Y P S + T A L+ + S + AWI+ G+P KLV+
Sbjct: 174 RNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVN---HVSGSDGINAWIQAGVPTKKLVL 230
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPA---LHDSGLVTYKEINNHIKTYGPDVQVMYNST 234
+PFYGYAWRLV +G+ A AAG + D G +TY I ++I +YN+T
Sbjct: 231 GIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNAT 288
Query: 235 YEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHNW 282
+YC W +DD + VR KV Y K + L GYF W V D NW
Sbjct: 289 IVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHV-AGDQNW 335
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 173 bits (439), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 152/288 (52%), Gaps = 16/288 (5%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
T++++NPS+ LSI G RKSFID SIR+AR GF GLD W
Sbjct: 58 TVQRKNPSVKTFLSIAGGR-ANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWE 116
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPAN--SYLLNSRQ 118
P ++ D+ N+G L +EWR A EA+NS R + L+LTA SP N +Y + S
Sbjct: 117 YPLSAADMTNLGTLLNEWR-TAINTEARNSGR--AALLLTAAVSNSPRVNGLNYPVESLA 173
Query: 119 RNLNWVHAVTASYYEPV-STNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVM 177
RNL+W++ + +Y P S + T A L+ + S + AWI+ G+P KLV+
Sbjct: 174 RNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVN---HVSGSDGINAWIQAGVPTKKLVL 230
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPA---LHDSGLVTYKEINNHIKTYGPDVQVMYNST 234
+PFYGYAWRLV +G+ A AAG + D G +TY I ++I +YN+T
Sbjct: 231 GIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNAT 288
Query: 235 YEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHNW 282
+YC W +DD + VR KV Y K + L GYF W V D NW
Sbjct: 289 IVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHV-AGDQNW 335
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 135/294 (45%), Gaps = 28/294 (9%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK NP + LL+IG G + +R++F++ +IR R Y F GLD W
Sbjct: 62 LKKMNPKLKTLLAIG-GWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS---PPANSYL----- 113
P + D+ R + N+ +Q++Q R S P +Y+
Sbjct: 121 PGSQGSP-----AVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 114 LNSRQRNLNWVHAVTASYY---EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 170
++ +NL++V+ + ++ E V T +P S + + D ++ W+E+G
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKV-TGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGT 234
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGIGAAAAG-----PALHDSGLVTYKEINNHIKTYGP 225
PA KL++ +P YG ++ L D +GA A G P + G++ Y E+ +
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQ 294
Query: 226 DVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+Q +V Y + W GFDDVE+ + KV+Y K+K L G VW +D DD
Sbjct: 295 RIQ-----DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 135/294 (45%), Gaps = 28/294 (9%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK NP + LL+IG G + +R++F++ +IR R Y F GLD W
Sbjct: 62 LKKMNPKLKTLLAIG-GWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS---PPANSYL----- 113
P + D+ R + N+ +Q++Q R S P +Y+
Sbjct: 121 PGSQGSP-----AVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 114 LNSRQRNLNWVHAVTASYY---EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 170
++ +NL++V+ + ++ E V T +P S + + D ++ W+++G
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKV-TGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGT 234
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGIGAAAAG-----PALHDSGLVTYKEINNHIKTYGP 225
PA KL++ +P YG ++ L D +GA A G P + G++ Y E+ +
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQ 294
Query: 226 DVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+Q +V Y + W GFDDVE+ + KV+Y K+K L G VW +D DD
Sbjct: 295 RIQ-----DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 135/294 (45%), Gaps = 28/294 (9%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK NP + LL+IG G + +R++F++ +IR R Y F GLD W
Sbjct: 62 LKKMNPKLKTLLAIG-GWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS---PPANSYL----- 113
P + D+ R + N+ +Q++Q R S P +Y+
Sbjct: 121 PGSQGSP-----AVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 114 LNSRQRNLNWVHAVTASYY---EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 170
++ +NL++V+ + ++ E V T +P S + + D ++ W+++G
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKV-TGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGT 234
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGIGAAAAG-----PALHDSGLVTYKEINNHIKTYGP 225
PA KL++ +P YG ++ L D +GA A G P + G++ Y E+ +
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQ 294
Query: 226 DVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+Q +V Y + W GFDDVE+ + KV+Y K+K L G VW +D DD
Sbjct: 295 RIQ-----DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 135/294 (45%), Gaps = 28/294 (9%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK NP + LL+IG G + +R++F++ +IR R Y F GLD W
Sbjct: 62 LKKMNPKLKTLLAIG-GWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS---PPANSYL----- 113
P + D+ R + N+ +Q++Q R S P +Y+
Sbjct: 121 PGSQGSP-----AVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 114 LNSRQRNLNWVHAVTASYY---EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 170
++ +NL++V+ + ++ E V T +P S + + D ++ W+++G
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKV-TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGT 234
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGIGAAAAG-----PALHDSGLVTYKEINNHIKTYGP 225
PA KL++ +P YG ++ L D +GA A G P + G++ Y E+ +
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQ 294
Query: 226 DVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+Q +V Y + W GFDDVE+ + KV+Y K+K L G VW +D DD
Sbjct: 295 RIQ-----DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 135/294 (45%), Gaps = 28/294 (9%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK NP + LL+IG G + +R++F++ +IR R Y F GLD W
Sbjct: 62 LKKMNPKLKTLLAIG-GWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS---PPANSYL----- 113
P + D+ R + N+ +Q++Q R S P +Y+
Sbjct: 121 PGSQGSP-----AVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 114 LNSRQRNLNWVHAVTASYY---EPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 170
++ +NL++V+ + ++ E V T +P S + + D ++ W+++G
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKV-TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGT 234
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGIGAAAAG-----PALHDSGLVTYKEINNHIKTYGP 225
PA KL++ +P YG ++ L D +GA A G P + G++ Y E+ +
Sbjct: 235 PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQ 294
Query: 226 DVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+Q +V Y + W GFDDVE+ + KV+Y K+K L G VW +D DD
Sbjct: 295 RIQ-----DQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 19/289 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
+LK +NP + ILLSIG G R FI+ I R + F GLD +W
Sbjct: 62 SLKTKNPKLKILLSIG-GYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWI 120
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P+ + + +L E A K K++ + +L+LTA NSY +
Sbjct: 121 YPDQKENT-HFTVLIHELAEAFQKDFTKST---KERLLLTAGVSAGRQMIDNSYQVEKLA 176
Query: 119 RNLNWVHAVT----ASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADK 174
++L++++ ++ S+ +P+ T +P + + + + + WI +G+P++K
Sbjct: 177 KDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEK 236
Query: 175 LVMCLPFYGYAWRLVKPEDN----GIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVM 230
+VM +P YG+++ L E G AAGP SG + Y EI +K G + +
Sbjct: 237 VVMGIPTYGHSFTLASAETTVGAPASGPGAAGPITESSGFLAYYEICQFLK--GAKITRL 294
Query: 231 YNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+ +V Y W G+DDV+++ KV + K L G +W +D DD
Sbjct: 295 QDQ--QVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDD 341
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 131/290 (45%), Gaps = 18/290 (6%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LK +N + LL+IG G + +R++FI I+ R Y F GLDF W
Sbjct: 62 LKNKNSQLKTLLAIG-GWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEY 120
Query: 62 PNT----STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSR 117
P + D +L E R A + EAK ++ + + S + Y +
Sbjct: 121 PGSRGSPPQDKHLFTVLVQEMR-EAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQL 179
Query: 118 QRNLNWVHAVTASYYEPVSTNFTAPPAALYG--SSSGGFA-RSTDQVLKAWIERGLPADK 174
+ L+++H +T + +T + LY + +G A + D V+ W + G PA+K
Sbjct: 180 SQYLDYIHVMTYDLHGSWE-GYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEK 238
Query: 175 LVMCLPFYGYAWRLVKPEDNGI-----GAAAAGPALHDSGLVTYKEINNHIKTYGPDVQV 229
L++ P YG+ + L P + GI GA AGP +SG+ Y EI +K
Sbjct: 239 LIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQ 295
Query: 230 MYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+++ EV Y +W G+D+V++ +K + K K G VW +D DD
Sbjct: 296 GWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 131/290 (45%), Gaps = 18/290 (6%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LK +N + LL+IG G + +R++FI I+ R Y F GLDF W
Sbjct: 66 LKNKNSQLKTLLAIG-GWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEY 124
Query: 62 PNT----STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSR 117
P + D +L E R A + EAK ++ + + S + Y +
Sbjct: 125 PGSRGSPPQDKHLFTVLVQEMR-EAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQL 183
Query: 118 QRNLNWVHAVTASYYEPVSTNFTAPPAALYG--SSSGGFA-RSTDQVLKAWIERGLPADK 174
+ L+++H +T + +T + LY + +G A + D V+ W + G PA+K
Sbjct: 184 SQYLDYIHVMTYDLHGSWE-GYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEK 242
Query: 175 LVMCLPFYGYAWRLVKPEDNGI-----GAAAAGPALHDSGLVTYKEINNHIKTYGPDVQV 229
L++ P YG+ + L P + GI GA AGP +SG+ Y EI +K
Sbjct: 243 LIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQ 299
Query: 230 MYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+++ EV Y +W G+D++++ +K + K K G VW +D DD
Sbjct: 300 GWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 20/288 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP++ LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPNLKTLLSVG-GWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D + L E + K EA+ +Q L+L+A +SY +
Sbjct: 120 YPGRR-DKQHFTTLIKEMKAEFIK-EAQPGKKQ---LLLSAALSAGKVTIDSSYDIAKIS 174
Query: 119 RNLNWVHAVTASYYEP--VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLV 176
++L+++ +T ++ +T +P +S +TD + + G PA KLV
Sbjct: 175 QHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLV 234
Query: 177 MCLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMY 231
M +P +G ++ L E G+GA +GP + ++G + Y EI + ++ G V +
Sbjct: 235 MGIPTFGRSFTLASSE-TGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATVHRIL 291
Query: 232 NSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+V Y + W G+DD E+V+ KV Y K+++L G VW +D DD
Sbjct: 292 GQ--QVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDD 337
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 22/292 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LK +N + LL+IG G +R+ FI IR R Y F GL+ W
Sbjct: 62 LKDKNTELKTLLAIG-GWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQY 120
Query: 62 PNT----STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFH--YSPPANSYLLN 115
P + D +L E R A E ++ + +L+LT+ + Y +
Sbjct: 121 PGSRGSPPKDKHLFSVLVKEMRKA---FEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIP 177
Query: 116 SRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS---SGGFARSTDQVLKAWIERGLPA 172
++L+++ +T ++P +T + LY S + D ++ W + G +
Sbjct: 178 ELSQSLDYIQVMTYDLHDP-KDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAAS 236
Query: 173 DKLVMCLPFYGYAWRLVKPEDNGIGAA--AAGPA---LHDSGLVTYKEINNHIKTYGPDV 227
+KL++ P YG+ + L P GIGA + GP +SGL+ Y E+ + +V
Sbjct: 237 EKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV 296
Query: 228 QVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+++ EV Y W G+D+V + ++K + K+ L G VW +D DD
Sbjct: 297 ---WDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 19/287 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP + LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPKLKTLLSVG-GWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + A+ + +L+L+A A Y +
Sbjct: 120 YPGRR-DKRHLTALVKEMKAEF----AREAQAGTERLLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARS-TDQVLKAWIERGLPADKLVM 177
R+L+++ +T ++ G+S G S D + + G PA+KLVM
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVM 234
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMYN 232
+P +G ++ L + +G GA +GP + + G++ Y EI + + +G +
Sbjct: 235 GIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRD 291
Query: 233 STYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 292 Q--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 131/288 (45%), Gaps = 21/288 (7%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP + LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPKLKTLLSVG-GWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + + EA+ + Q L+L+A A Y +
Sbjct: 120 YPGRR-DKRHLTTLVKEMKAEFIR-EAQAGTEQ---LLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEP--VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLV 176
R+L+++ +T ++ + +P A +S F+ + D + + G PA+KLV
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNA-DYAVSYMLRLGAPANKLV 233
Query: 177 MCLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMY 231
M +P +G ++ L + + +GA +GP + + G++ Y EI + + +G
Sbjct: 234 MGIPTFGRSFTLASSKTD-VGAPVSGPGVPGRFTKEKGILAYYEICDFL--HGATTHRFR 290
Query: 232 NSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+ +V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 291 DQ--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 19/287 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP++ LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPNLKTLLSVG-GWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + + EA+ + Q L+L+A A Y +
Sbjct: 120 YPGWR-DKRHLTTLVKEMKAEFVR-EAQAGTEQ---LLLSAAVTAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARS-TDQVLKAWIERGLPADKLVM 177
R+L+++ +T ++ G+S G S D + + G PA+KLVM
Sbjct: 175 RHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVM 234
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMYN 232
+P +G ++ L +GA +GP + + G++ Y EI + + +G +
Sbjct: 235 GIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEICDFL--HGATTHRFRD 291
Query: 233 STYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 292 Q--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 127/287 (44%), Gaps = 19/287 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP++ LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPNLKTLLSVG-GWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + + EA+ + Q L+L+A A Y +
Sbjct: 120 YPGWR-DKRHLTTLVKEMKAEFVR-EAQAGTEQ---LLLSAAVPAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARST-DQVLKAWIERGLPADKLVM 177
R+L+++ +T ++ G+S G S D + + G PA+KLVM
Sbjct: 175 RHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVM 234
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMYN 232
+P +G ++ L + + +GA +GP + + G + Y EI + + +G +
Sbjct: 235 GIPTFGRSYTLASSKTD-VGAPISGPGIPGQFTKEKGTLAYYEICDFL--HGATTHRFRD 291
Query: 233 STYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 292 Q--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 124/287 (43%), Gaps = 19/287 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP + LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPKLKTLLSVG-GWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + A+ + +L+L+A A Y +
Sbjct: 120 YPGRR-DKRHLTALVKEMKAEF----AREAQAGTERLLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARS-TDQVLKAWIERGLPADKLVM 177
R+L+++ +T ++ G+S S D + + G PA+KLVM
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVM 234
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMYN 232
+P +G ++ L + +G GA +GP + + G++ Y EI + + +G +
Sbjct: 235 GIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRD 291
Query: 233 STYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 292 Q--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 21/288 (7%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP++ LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPNLKTLLSVG-GWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + + EA+ + Q L+L+A A Y +
Sbjct: 120 YPGRR-DKRHLTTLVKEMKAEFIR-EAQAGTEQ---LLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEP--VSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLV 176
R+L+++ +T ++ + +P +S F+ + D + + G PA+KLV
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNA-DYAVSYMLRLGAPANKLV 233
Query: 177 MCLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMY 231
M +P +G ++ L + + +GA +GP + + G++ Y EI + ++ G
Sbjct: 234 MGIPTFGKSFTLASSKTD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQ--GATTHRFR 290
Query: 232 NSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+ +V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 291 DQ--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 21/288 (7%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP + LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPKLKTLLSVG-GWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + + EA+ + QL+L+A A Y +
Sbjct: 120 YPGRR-DKRHLTTLVKEMKAEFIR-EAQAGT---EQLLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGS--SSGGFARSTDQVLKAWIERGLPADKLV 176
R+L+++ +T ++ G+ +S F+ + D + + G PA+KLV
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA-DYAVSYMLRLGAPANKLV 233
Query: 177 MCLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMY 231
M +P +G ++ L + + +GA +GP + + G++ Y EI + + +G
Sbjct: 234 MGIPTFGRSFTLASSKTD-VGAPVSGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFR 290
Query: 232 NSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+ +V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 291 DQ--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 19/287 (6%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP + LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPKLKTLLSVG-GWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + A+ + +L+L+A A Y +
Sbjct: 120 YPGRR-DKRHLTALVKEMKAEF----AREAQAGTERLLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARS-TDQVLKAWIERGLPADKLVM 177
R+L+++ +T ++ G+S S D + + G PA+KLVM
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVM 234
Query: 178 CLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMYN 232
+P +G ++ L + + +GA +GP + + G++ Y EI + + +G +
Sbjct: 235 GIPTFGRSFTLASSKTD-VGAPISGPGIPGRFTKEKGILAYYEICDFL--HGATTHRFRD 291
Query: 233 STYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 292 Q--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 21/288 (7%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
TLK NP++ LLS+G G + R++FI R +GF GLD AW
Sbjct: 61 TLKNRNPNLKTLLSVG-GWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQ 118
P D ++ L E + + EA+ + Q L+L+A A Y +
Sbjct: 120 WPGWR-DKRHLTTLVKEMKAEFVR-EAQAGTEQ---LLLSAAVTAGKIAIDRGYDIAQIS 174
Query: 119 RNLNWVHAVTASYYEPVSTNFTAPPAALYGS--SSGGFARSTDQVLKAWIERGLPADKLV 176
R+L+++ +T ++ G+ +S F+ + D + + G PA+KLV
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA-DYAVSYMLRLGAPANKLV 233
Query: 177 MCLPFYGYAWRLVKPEDNGIGAAAAGPALHD-----SGLVTYKEINNHIKTYGPDVQVMY 231
M +P +G ++ L + + +GA +GP + G++ Y EI + + +G
Sbjct: 234 MGIPTFGRSYTLASSKTD-VGAPISGPGIPGRFTKWKGILAYYEICDFL--HGATTHRFR 290
Query: 232 NSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
+ +V Y + W +DD E+V+ K Y K ++L G VW +D DD
Sbjct: 291 DQ--QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 117/284 (41%), Gaps = 22/284 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK N S+ I+LSIG T R +F ++ + +GF G+D W
Sbjct: 98 LKKANRSLKIMLSIGGW--TWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEY 155
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYL-------L 114
P + TD N+ LL R A ++ QL + A P S+ L
Sbjct: 156 PASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAA-----PAGPSHYNVLKLAQL 210
Query: 115 NSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADK 174
S N+N + A ++ VS + T + SS F ST + A+I G+PA K
Sbjct: 211 GSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPF--STKAAVDAYIAAGVPASK 268
Query: 175 LVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNST 234
+++ +P YG A V + G + G +SG+ YK + T D +T
Sbjct: 269 IILGMPIYGRA--FVGTDGPGKPYSTIGEGSWESGIWDYKVLPKAGATVITDSAA--GAT 324
Query: 235 YEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278
Y +Y S + +D + VR KV+YAK L G W D
Sbjct: 325 Y--SYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 113/284 (39%), Gaps = 22/284 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK+N ++ +LLSIG T RK+F ++++ + GF GLD W
Sbjct: 121 LKKQNRNLKVLLSIGGW--TYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY 178
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYL-LNSRQRN 120
P + LL E R A A N+ Q +LT P L L +
Sbjct: 179 PENDQQANDFVLLLKEVRTALDSYSAANAGGQ--HFLLTVASPAGPDKIKVLHLKDMDQQ 236
Query: 121 LNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR--STDQVLKAWIERGLPADKLVMC 178
L++ + + Y S+ + A +Y +S + +T L + G+PA+K+V+
Sbjct: 237 LDFWNLMAYDYAGSFSS-LSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLG 295
Query: 179 LPFYGYAWRLV----KPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNST 234
+P YG ++ KP NG+G + + D + H+ PD+ Y
Sbjct: 296 MPLYGRSFANTDGPGKPY-NGVGQGSWENGVWDYKALPQAGATEHVL---PDIMASY--- 348
Query: 235 YEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278
+Y + K +D+ + +K Y K L G W D
Sbjct: 349 ---SYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 113/284 (39%), Gaps = 22/284 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK+N ++ +LLSIG T RK+F ++++ + GF GLD W
Sbjct: 83 LKKQNRNLKVLLSIGGW--TYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY 140
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYL-LNSRQRN 120
P + LL E R A A N+ Q +LT P L L +
Sbjct: 141 PENDQQANDFVLLLREVRTALDSYSAANAGGQ--HFLLTVASPAGPDKIKVLHLKDMDQQ 198
Query: 121 LNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR--STDQVLKAWIERGLPADKLVMC 178
L++ + + Y S+ + A +Y +S + +T L + G+PA+K+V+
Sbjct: 199 LDFWNLMAYDYAGSFSS-LSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLG 257
Query: 179 LPFYGYAWRLV----KPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNST 234
+P YG ++ KP NG+G + + D + H+ PD+ Y
Sbjct: 258 MPLYGRSFANTDGPGKPY-NGVGQGSWENGVWDYKALPQAGATEHVL---PDIMASY--- 310
Query: 235 YEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278
+Y + K +D+ + +K Y K L G W D
Sbjct: 311 ---SYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 50/309 (16%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LK+ NP++ ++S+G T R+ F + ++ R Y F G+D W
Sbjct: 116 LKQTNPNLKTIISVGGW--TWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEY 173
Query: 62 PNTS---------TDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSY 112
P + D N LL + R KL+A + + L+ A + A +
Sbjct: 174 PVSGGLDGNSKRPEDKQNYTLLLSKIR---EKLDAAGAVDGKKYLLTIASGASATYAANT 230
Query: 113 LLNSRQRNLNWVHAVTASY---------------YEPVSTNFTAPPAALYGSSSGGFARS 157
L ++W++ +T + Y+P ++ P A + ++G
Sbjct: 231 ELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGA---- 286
Query: 158 TDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNG-----IGAAAAGPALHDSGLVT 212
+ ++ G+PA KLV+ +PFYG W NG G ++ G ++G
Sbjct: 287 -----QGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFD 339
Query: 213 YKEIN-NHIKTYGPDVQVMYNSTYEVNYC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRG 269
+ ++ N+I G +N T +V Y + K + +DD E+V K AY K K L G
Sbjct: 340 FYDLEANYINKNG--YTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGG 397
Query: 270 YFVWRVDYD 278
W + D
Sbjct: 398 AMFWELSGD 406
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 75/343 (21%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRK----SFIDCSIRIARLYGFQGLD 56
+LK++ P + +LLS+G D K FI + + + YGF GLD
Sbjct: 69 SLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLD 128
Query: 57 FAWTAPNTS---------------TDLFNIGLLFD------EWRIAATKLEAKNSSRQQS 95
A+ P LF + D + + A + K+S R
Sbjct: 129 LAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADG 188
Query: 96 QLI-------LTARFHYSPPANSYLLNSRQRNLNWVHAVTASYYEPV----STNFTAPPA 144
L+ + + +++ PA + L +++V+ T + P +++AP
Sbjct: 189 FLLSLTVLPNVNSTWYFDIPALNGL-------VDFVNLATFDFLTPARNPEEADYSAPIY 241
Query: 145 ALYGSSSGGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGI-------- 196
GS + D ++ W+ +G P++K+ + + YG AW+L K D+G+
Sbjct: 242 HPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTK--DSGLEGVPVVPE 299
Query: 197 --GAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTYEVNYCS------------- 241
G A G GL++Y EI + P Q + + + S
Sbjct: 300 TSGPAPEGFQSQKPGLLSYAEICGKLSN--PQNQFLKGNESPLRRVSDPTKRFGGIAYRP 357
Query: 242 -----IEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
E IW +DD ++ K AYA+ K L G ++ + YDD
Sbjct: 358 VDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDD 400
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 20/283 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK N ++ LLSIG T RK F D S+++ + GF G+D W
Sbjct: 80 LKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQY 137
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRN 120
P + LL R A AK+ + ++ +LT P N L +
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKK--FLLTIASPAGPQNYNKLKLAEMDKY 195
Query: 121 LNWVHAVTASY---YEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVM 177
L++ + + + ++ VS + + + S F S+D+ +K +I+ G+PA+K+V+
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPF--SSDKAVKDYIKAGVPANKIVL 253
Query: 178 CLPFYGYAWRLVKPEDNGIGAA--AAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTY 235
+P YG A+ +GIG + G ++G+ YK++ G V + +
Sbjct: 254 GMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQVTELEDIAA 305
Query: 236 EVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278
+Y ++ +D V+ K Y + + G W D
Sbjct: 306 SYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 20/283 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK N ++ LLSIG T RK F D S+++ + GF G+D W
Sbjct: 80 LKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEY 137
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRN 120
P + LL R A AK+ + ++ +LT P N L +
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKK--FLLTIASPAGPQNYNKLKLAEMDKY 195
Query: 121 LNWVHAVTASY---YEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVM 177
L++ + + + ++ VS + + + S F S+D+ +K +I+ G+PA+K+V+
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPF--SSDKAVKDYIKAGVPANKIVL 253
Query: 178 CLPFYGYAWRLVKPEDNGIGAA--AAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTY 235
+P YG A+ +GIG + G ++G+ YK++ G V + +
Sbjct: 254 GMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQVTELEDIAA 305
Query: 236 EVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278
+Y ++ +D V+ K Y + + G W D
Sbjct: 306 SYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 20/283 (7%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWTA 61
LKK N ++ LLSIG T RK F D S+++ + GF G+D W
Sbjct: 80 LKKNNRNLKTLLSIGGW--TYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEY 137
Query: 62 PNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRN 120
P + LL R A AK+ + ++ +LT P N L +
Sbjct: 138 PEDEKQANDFVLLLKACREALDAYSAKHPNGKK--FLLTIASPAGPQNYNKLKLAEMDKY 195
Query: 121 LNWVHAVTASY---YEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVM 177
L++ + + + ++ VS + + + S F S+D+ +K +I+ G+PA+K+V+
Sbjct: 196 LDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPF--SSDKAVKDYIKAGVPANKIVL 253
Query: 178 CLPFYGYAWRLVKPEDNGIGAA--AAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTY 235
+P YG A+ +GIG + G ++G+ YK++ G V + +
Sbjct: 254 GMPLYGRAFAST----DGIGTSFNGVGGGSWENGVWDYKDMPQQ----GAQVTELEDIAA 305
Query: 236 EVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278
+Y ++ +D V+ K Y + + G W D
Sbjct: 306 SYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G+D
Sbjct: 81 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVD 140
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 141 IDWEYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 189
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 190 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 309 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 366
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 367 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G+D
Sbjct: 81 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVD 140
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 141 INWEYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 189
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 190 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 309 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 366
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 367 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G+D
Sbjct: 81 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVD 140
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 141 INWEYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 189
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 190 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 309 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 366
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 367 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G+D
Sbjct: 81 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVD 140
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 141 IDWQYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 189
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 190 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 309 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 366
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 367 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G+D
Sbjct: 81 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVD 140
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 141 IDWEYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 189
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 190 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 309 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 366
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 367 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G+D
Sbjct: 80 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVD 139
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 140 IDWEYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 188
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 189 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 247
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 248 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 307
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 308 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 365
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 366 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 410
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/345 (20%), Positives = 131/345 (37%), Gaps = 79/345 (22%)
Query: 2 LKKENPSITILLSIG-----QGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLD 56
LK NPS+ I+ SIG + R F +RI + YGF G++
Sbjct: 81 LKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVN 140
Query: 57 FAWTAPNTS-TDLFNIGLLFDEWRIAATKLEAKNSSRQQS----QLILTARFHYSPPANS 111
W P + D F IAA + E + QQ+ + L + + +
Sbjct: 141 IDWEYPQAAEVDGF----------IAALQ-EIRTLLNQQTITDGRQALPYQLTIAGAGGA 189
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAP-------PAALYGSSSGG----------- 153
+ L+ L + A Y ++ + P AAL+G ++G
Sbjct: 190 FFLSRYYSKLAQIVA-PLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANL 248
Query: 154 --------------FARSTDQ-VLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGA 198
F+ + D V + + G+P+ K+VM +PFYG A++ V + G +
Sbjct: 249 GWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYS 308
Query: 199 AAAGPAL-------------------HDSGLVTYKEINNHIK-TYGPDVQVMYNSTYEVN 238
+ + P D + +Y+++ ++ YG Q ++N +
Sbjct: 309 SHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYG--YQRLWNDKTKTP 366
Query: 239 YC--SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Y + ++ +DD E+ + K Y K+++L G W + D+ N
Sbjct: 367 YLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 126/331 (38%), Gaps = 62/331 (18%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ NP + I+ SIG G +R +F+ + + + F G+D W
Sbjct: 238 LKQRNPDLKIIPSIGGG---TLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWE 294
Query: 61 APNTSTDLFNIG----------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPAN 110
P + G L E R+ +LEA+ + + +L Y +
Sbjct: 295 FPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAE--TGRTYELTSAIGVGYDKIED 352
Query: 111 SYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALY-------GSSSGGF--------- 154
++ Q ++++ A+T +Y + N ALY G GG
Sbjct: 353 VDYADAVQY-MDYIFAMTYDFYGGWN-NVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 155 --ARSTDQVLKAWIERGLPADKLVMCLPFYGYAWR------LVKPEDNGIGAA------A 200
A + D ++ + +G+PA+KLV+ YG W L P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 201 AGPALHDSGLVTYKEINNHIK----------TYGPDVQVMYNSTYEVNYCSIEKIWFGFD 250
+ + G++ YK I + + YG D Q + + N + E I FD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQA--EAPWVWNRSTGELIT--FD 526
Query: 251 DVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
D +V K YAK L G F W +D D+ +
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADNGD 557
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 112/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D AW
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 113/297 (38%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L A+ + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGPALH--DSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 113/297 (38%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L A+ + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 113/297 (38%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 259 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 315
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L A+ + + ++A +
Sbjct: 316 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAG---KDKIDK 372
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 373 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 432
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGPALH--DSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + + +
Sbjct: 433 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMS--GE 490
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 491 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 547
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 112/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ ++Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGPALH--DSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQ 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWE 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 112/297 (37%), Gaps = 25/297 (8%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ +P + IL SIG R F+ + + F G+D W
Sbjct: 236 LKQAHPDLKILPSIG---GWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWL 292
Query: 61 APNTSTDLFNIG---------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111
P N+G LL E R +L + + + ++A +
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAG---KDKIDK 349
Query: 112 YLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS-SGGFARSTDQVLKAWIERGL 170
N Q +++ + ++ +Y AL + A +T + A + +G+
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGV 409
Query: 171 PADKLVMCLPFYGYAWRLVKPEDNGI--GAAAAGP--ALHDSGLVTYKEINNHIKTYGPD 226
K+V+ YG W V N I A GP ++G+V Y++I + + +
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMS--GE 467
Query: 227 VQVMYNSTYEVNYCSIEKI--WFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
Q Y++T E Y FDD +V+ K Y +K+L G F W +D D+ +
Sbjct: 468 WQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGD 524
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 125/331 (37%), Gaps = 62/331 (18%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ NP + I+ SIG +R +F+ + + + F G+D W
Sbjct: 238 LKQRNPDLKIIPSIGG---WTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWM 294
Query: 61 APNTSTDLFNIG----------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPAN 110
P + G L E R+ +LEA+ + + +L Y +
Sbjct: 295 FPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAE--TGRTYELTSAIGVGYDKIED 352
Query: 111 SYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALY-------GSSSGGF--------- 154
++ Q ++++ A+T +Y + N ALY G GG
Sbjct: 353 VDYADAVQY-MDYIFAMTYDFYGGWN-NVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 155 --ARSTDQVLKAWIERGLPADKLVMCLPFYGYAWR------LVKPEDNGIGAA------A 200
A + D ++ + +G+PA+KLV+ YG W L P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 201 AGPALHDSGLVTYKEINNHIK----------TYGPDVQVMYNSTYEVNYCSIEKIWFGFD 250
+ + G++ YK I + + YG D Q + + N + E I FD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQA--EAPWVWNRSTGELIT--FD 526
Query: 251 DVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
D +V K YAK L G F W +D D+ +
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADNGD 557
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 125/331 (37%), Gaps = 62/331 (18%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGF-QGLDFAWT 60
LK+ NP + I+ SIG +R +F+ + + + F G+D W
Sbjct: 238 LKQRNPDLKIIPSIGG---WTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWE 294
Query: 61 APNTSTDLFNIG----------LLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPAN 110
P + G L E R+ +LEA+ + + +L Y +
Sbjct: 295 FPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAE--TGRTYELTSAIGVGYDKIED 352
Query: 111 SYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALY-------GSSSGGF--------- 154
++ Q ++++ A+T +Y + N ALY G GG
Sbjct: 353 VDYADAVQY-MDYIFAMTYDFYGGWN-NVPGHQTALYCGSFMRPGQCDGGGVDENGEPYK 410
Query: 155 --ARSTDQVLKAWIERGLPADKLVMCLPFYGYAWR------LVKPEDNGIGAA------A 200
A + D ++ + +G+PA+KLV+ YG W L P D G A +
Sbjct: 411 GPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGS 470
Query: 201 AGPALHDSGLVTYKEINNHIK----------TYGPDVQVMYNSTYEVNYCSIEKIWFGFD 250
+ + G++ YK I + + YG D Q + + N + E I FD
Sbjct: 471 TAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQA--EAPWVWNRSTGELIT--FD 526
Query: 251 DVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281
D +V K YAK L G F W +D D+ +
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADNGD 557
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 110/314 (35%), Gaps = 40/314 (12%)
Query: 1 TLKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHRKSFIDCSIRIARLYGFQGLDFAWT 60
L+K+NP + +LLS+G R FI + +I + YG G+D W
Sbjct: 100 ALRKQNPDLKVLLSVG---GWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWE 156
Query: 61 APNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRN 120
P D A + + +Q + + + P + + +
Sbjct: 157 FPVNGAWGLVASQPADRDNFTALLKSLREAVGEQKLVTIAVGANAESPKSWVDVKAVAPV 216
Query: 121 LNWVHAVTASYYEPVSTNFTAPPAALYGSS-----SGGFARSTDQVLKAWIERGLPADKL 175
LN+++ T Y T + + LY SS + S D V+ ++ GL +
Sbjct: 217 LNYINLXT--YDXAYGTQYFN--SNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQX 272
Query: 176 VMCLPFYGYA----------WRLVKPEDNGIGAAAAGPAL--------HDSGLVTYKEIN 217
+ + FYG W ++N + GP +D TY + N
Sbjct: 273 NLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYN 332
Query: 218 NHIKTYGPDVQVMYNSTYE----VNYCSIEK------IWFGFDDVEAVRMKVAYAKEKKL 267
+ + D Q + ++ V + S++ +++ +V +K Y K K L
Sbjct: 333 DIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGL 392
Query: 268 RGYFVWRVDYDDHN 281
G W DD N
Sbjct: 393 AGAXFWEYGADDQN 406
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 118/312 (37%), Gaps = 49/312 (15%)
Query: 2 LKKENPSITILLSIGQGMDTXXXXXXXXXXXXXHR--KSFIDCSIR--IARLYG------ 51
LK +NP + +++S+G + + S ID I+ + G
Sbjct: 111 LKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGA 170
Query: 52 ----FQGLDFAWTAPNTSTDLFNIGL-----------LFDEWRIAATKLEAKNSSRQQSQ 96
F G+D W P T++ L G+ L E+R +L+A S+ + +
Sbjct: 171 AAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFR---KQLDAYGSTNNK-K 226
Query: 97 LILTARFHYSPP---ANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGG 153
+L+A +P A + + ++L++ + + T A LY +
Sbjct: 227 YVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADP 286
Query: 154 FARS----TDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSG 209
A S D+ +K ++ G+ +L + L YG W K + GPA D
Sbjct: 287 RAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK------NVSPWGPAT-DGA 339
Query: 210 LVTYKEIN---NHIKTYGPDVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKK 266
TY+ N + +KT G D Y++ + W+ +D++ + K Y K
Sbjct: 340 PGTYETANEDYDKLKTLGTD---HYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKG 396
Query: 267 LRGYFVWRVDYD 278
L G W + D
Sbjct: 397 LGGGMWWELSGD 408
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 239 YCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
Y K++ D +VR K Y K+K L G F+W D D+
Sbjct: 456 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 239 YCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDD 279
Y K++ D +VR K Y K+K L G F+W D D+
Sbjct: 484 YSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1NR5|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NR5|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NRX|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NRX|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NUA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NUA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NVA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVB|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVB|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVE|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|C Chain C, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|D Chain D, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVF|A Chain A, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|B Chain B, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|C Chain C, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1SG6|A Chain A, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
pdb|1SG6|B Chain B, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
Length = 393
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 93 QQSQLILTARFHYSPPANSYLLNSRQRN------LNWVHAVTASYYEPVSTNFTAPPAAL 146
+ ++ IL AR S +Y++++ +R LNW H++ E + T P L
Sbjct: 233 EGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSI-GHAIEAILT-----PQIL 286
Query: 147 YGSSSG-GFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRL 188
+G G + + I +G+ ++V CL YG L
Sbjct: 287 HGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSL 329
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 170 LPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQV 229
+P+ K+++ +P YGY W + P G A+A + I ++ P +
Sbjct: 212 VPSRKIIIGVPLYGYDW--IIPYQPGTVASA---------ISNQNAIERAMRYQAP---I 257
Query: 230 MYNSTYEVNY-------CSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRV 275
Y++ Y+ + ++W F+ V ++ K+ +E +L+ W++
Sbjct: 258 QYSAEYQSPFFRYSDQQGRTHEVW--FEGVRSMSRKMQIVREYRLQAIGAWQL 308
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 26/121 (21%)
Query: 162 LKAWIERGLPA-DKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHI 220
LK W E+ + K+V LPFYGY+W + A+ D + Y I H+
Sbjct: 192 LKYWNEQCRASKSKIVGGLPFYGYSWE-----------ESLQGAVDDVRGIRYSGILKHL 240
Query: 221 KTYGPDVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDH 280
D + TY ++ + K + KE G +W++ D H
Sbjct: 241 GNEAADKDNI-GKTY-------------YNGRPTIANKCKFIKENDYAGVXIWQLFQDAH 286
Query: 281 N 281
N
Sbjct: 287 N 287
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis,
20 Structures
Length = 109
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 35 HRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIG 72
H S DC ++I R G G WT S D+F+ G
Sbjct: 53 HNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNG 90
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 120 NLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIE---RGLPADKLV 176
NL HA T +P N + G S G RST + +A + R D+ V
Sbjct: 633 NLYATHATTLHLVKPTIVNSSEVFLVFGGRQSNGALRSTTALQRALLSLYARNAAIDRAV 692
Query: 177 MCLPFYG 183
+PF+G
Sbjct: 693 THIPFFG 699
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,619,446
Number of Sequences: 62578
Number of extensions: 344242
Number of successful extensions: 924
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 73
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)