Query 042934
Match_columns 282
No_of_seqs 127 out of 1264
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 1.4E-60 3E-65 432.8 28.6 268 1-281 63-344 (362)
2 cd02879 GH18_plant_chitinase_c 100.0 7.3E-60 1.6E-64 416.3 24.9 232 2-282 60-297 (299)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 4.1E-59 8.9E-64 427.5 28.5 270 1-280 67-394 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 1.6E-57 3.4E-62 408.7 26.4 265 1-278 59-334 (334)
5 KOG2806 Chitinase [Carbohydrat 100.0 1.9E-57 4.2E-62 417.7 27.2 273 1-281 114-400 (432)
6 COG3325 ChiA Chitinase [Carboh 100.0 8.4E-57 1.8E-61 395.7 20.6 269 1-278 119-423 (441)
7 cd06548 GH18_chitinase The GH1 100.0 2.2E-56 4.8E-61 398.7 23.5 233 1-278 77-322 (322)
8 cd02878 GH18_zymocin_alpha Zym 100.0 8.7E-56 1.9E-60 397.6 25.8 256 8-278 61-345 (345)
9 cd02875 GH18_chitobiase Chitob 100.0 4.1E-53 8.9E-58 381.2 24.9 252 3-281 72-342 (358)
10 PF00704 Glyco_hydro_18: Glyco 100.0 1.5E-52 3.2E-57 377.5 24.2 267 2-278 67-343 (343)
11 cd02874 GH18_CFLE_spore_hydrol 100.0 4.3E-51 9.3E-56 363.7 22.5 240 5-282 55-310 (313)
12 cd02876 GH18_SI-CLP Stabilin-1 100.0 3.8E-51 8.1E-56 364.6 21.6 235 2-280 60-312 (318)
13 cd06549 GH18_trifunctional GH1 100.0 3.3E-46 7.2E-51 329.4 21.6 235 2-280 56-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 1.2E-40 2.5E-45 287.9 19.7 189 4-280 55-244 (253)
15 COG3858 Predicted glycosyl hyd 100.0 3.7E-37 8E-42 270.9 17.9 223 22-280 178-412 (423)
16 cd00598 GH18_chitinase-like Th 100.0 3.7E-31 8E-36 222.5 15.0 116 2-130 58-177 (210)
17 cd06544 GH18_narbonin Narbonin 100.0 3.2E-29 7E-34 214.9 16.9 158 1-186 63-221 (253)
18 cd06546 GH18_CTS3_chitinase GH 99.9 3.9E-26 8.4E-31 196.9 18.3 139 5-181 69-217 (256)
19 cd02871 GH18_chitinase_D-like 99.9 2.4E-25 5.2E-30 197.7 19.2 152 5-182 70-248 (312)
20 KOG2091 Predicted member of gl 99.9 2.6E-25 5.6E-30 188.2 14.5 233 1-277 135-383 (392)
21 cd02877 GH18_hevamine_XipI_cla 99.9 1.7E-22 3.6E-27 175.7 16.7 146 4-182 68-229 (280)
22 cd06542 GH18_EndoS-like Endo-b 99.9 7.2E-23 1.6E-27 177.2 14.3 142 5-184 61-208 (255)
23 cd06543 GH18_PF-ChiA-like PF-C 99.8 2.2E-19 4.7E-24 157.3 13.1 110 6-134 65-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.6 6.3E-14 1.4E-18 116.1 12.5 113 6-134 96-215 (332)
25 KOG4701 Chitinase [Cell wall/m 99.2 4.5E-10 9.8E-15 98.3 13.1 144 5-182 100-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.9 1.8E-08 3.8E-13 90.3 10.5 151 4-187 55-216 (339)
27 PF02638 DUF187: Glycosyl hydr 98.2 2.7E-05 5.8E-10 69.3 12.1 129 31-185 134-300 (311)
28 PF03644 Glyco_hydro_85: Glyco 98.1 1.2E-05 2.6E-10 71.3 8.2 150 4-185 51-209 (311)
29 PF11340 DUF3142: Protein of u 98.0 0.00018 3.9E-09 58.0 11.6 115 32-183 22-138 (181)
30 PF13200 DUF4015: Putative gly 97.1 0.0082 1.8E-07 53.3 11.7 98 37-146 123-241 (316)
31 KOG2331 Predicted glycosylhydr 96.9 0.013 2.9E-07 53.0 11.4 81 4-86 120-201 (526)
32 COG1306 Uncharacterized conser 94.3 0.22 4.8E-06 43.4 7.6 81 39-132 197-299 (400)
33 TIGR01370 cysRS possible cyste 92.5 0.71 1.5E-05 41.1 8.1 53 32-86 142-203 (315)
34 COG1649 Uncharacterized protei 91.8 0.52 1.1E-05 43.4 6.6 90 32-129 180-307 (418)
35 cd02810 DHOD_DHPD_FMN Dihydroo 89.1 2.9 6.2E-05 36.6 8.9 92 7-128 97-197 (289)
36 PF14885 GHL15: Hypothetical g 88.2 0.88 1.9E-05 31.8 3.9 43 16-59 32-75 (79)
37 PF13199 Glyco_hydro_66: Glyco 88.1 1.1 2.5E-05 43.0 5.9 54 30-84 237-300 (559)
38 cd02801 DUS_like_FMN Dihydrour 87.0 5 0.00011 33.7 8.8 63 3-83 49-122 (231)
39 TIGR02103 pullul_strch alpha-1 84.3 3.5 7.7E-05 42.0 7.4 48 31-86 469-516 (898)
40 cd04740 DHOD_1B_like Dihydroor 84.1 6.8 0.00015 34.5 8.5 59 7-83 88-153 (296)
41 PF14883 GHL13: Hypothetical g 83.3 6.9 0.00015 34.3 7.8 129 32-187 117-266 (294)
42 TIGR02104 pulA_typeI pullulana 82.5 4.9 0.00011 39.3 7.5 48 31-86 292-339 (605)
43 PLN02495 oxidoreductase, actin 81.8 11 0.00025 34.6 9.1 47 2-64 107-153 (385)
44 cd04733 OYE_like_2_FMN Old yel 81.6 9.9 0.00021 34.2 8.6 26 35-61 147-172 (338)
45 PRK07259 dihydroorotate dehydr 81.4 8.7 0.00019 33.9 8.1 58 8-83 91-156 (301)
46 TIGR00742 yjbN tRNA dihydrouri 81.1 8 0.00017 34.6 7.8 60 6-83 52-122 (318)
47 PRK08318 dihydropyrimidine deh 80.1 11 0.00024 35.0 8.7 63 4-83 95-167 (420)
48 PRK11815 tRNA-dihydrouridine s 78.9 7.7 0.00017 34.9 7.0 59 7-83 63-132 (333)
49 cd02940 DHPD_FMN Dihydropyrimi 78.9 17 0.00036 32.1 9.0 63 4-83 95-167 (299)
50 COG4724 Endo-beta-N-acetylgluc 77.7 4.6 9.9E-05 36.8 5.0 73 4-80 136-217 (553)
51 PRK10550 tRNA-dihydrouridine s 77.6 18 0.00039 32.2 8.9 80 37-128 75-169 (312)
52 PRK14582 pgaB outer membrane N 77.0 16 0.00035 36.2 8.9 133 32-187 439-614 (671)
53 PRK12568 glycogen branching en 75.3 11 0.00025 37.5 7.5 56 30-86 380-452 (730)
54 PF14871 GHL6: Hypothetical gl 75.2 3.5 7.6E-05 31.8 3.2 34 26-59 99-132 (132)
55 cd02929 TMADH_HD_FMN Trimethyl 75.2 15 0.00032 33.6 7.9 26 35-61 148-173 (370)
56 cd04734 OYE_like_3_FMN Old yel 75.1 28 0.0006 31.5 9.5 25 34-59 138-162 (343)
57 TIGR00737 nifR3_yhdG putative 75.0 15 0.00031 32.8 7.6 41 6-63 60-100 (319)
58 PF06925 MGDG_synth: Monogalac 74.4 5.7 0.00012 31.8 4.4 24 157-180 144-168 (169)
59 cd04747 OYE_like_5_FMN Old yel 74.0 43 0.00093 30.6 10.4 63 35-105 142-220 (361)
60 PRK12313 glycogen branching en 73.4 12 0.00026 36.8 7.2 54 31-86 282-352 (633)
61 cd04735 OYE_like_4_FMN Old yel 73.3 40 0.00087 30.6 10.1 26 34-60 141-166 (353)
62 TIGR02402 trehalose_TreZ malto 72.8 9.7 0.00021 36.8 6.3 49 34-86 220-268 (542)
63 TIGR01037 pyrD_sub1_fam dihydr 72.3 24 0.00051 31.1 8.3 89 8-127 90-189 (300)
64 TIGR01515 branching_enzym alph 71.9 17 0.00037 35.7 7.8 55 31-86 268-339 (613)
65 PRK07565 dihydroorotate dehydr 70.6 26 0.00057 31.4 8.3 59 7-83 100-164 (334)
66 cd02932 OYE_YqiM_FMN Old yello 69.8 29 0.00064 31.1 8.4 24 35-59 152-175 (336)
67 PF02065 Melibiase: Melibiase; 69.7 32 0.00069 31.8 8.6 64 30-105 162-236 (394)
68 PF01207 Dus: Dihydrouridine s 69.6 15 0.00032 32.7 6.3 79 39-128 67-159 (309)
69 PRK14706 glycogen branching en 69.2 18 0.00038 35.7 7.3 55 31-86 279-348 (639)
70 PRK08255 salicylyl-CoA 5-hydro 68.4 32 0.00069 34.8 9.1 85 35-127 549-658 (765)
71 PRK13523 NADPH dehydrogenase N 68.1 49 0.0011 29.9 9.4 26 34-60 139-164 (337)
72 PRK05402 glycogen branching en 67.1 22 0.00047 35.7 7.5 56 30-86 376-448 (726)
73 cd02803 OYE_like_FMN_family Ol 66.0 38 0.00083 30.1 8.4 24 36-60 140-163 (327)
74 cd02930 DCR_FMN 2,4-dienoyl-Co 65.8 38 0.00083 30.6 8.3 24 35-59 135-158 (353)
75 cd04741 DHOD_1A_like Dihydroor 65.8 44 0.00096 29.4 8.5 59 7-83 90-156 (294)
76 PRK02506 dihydroorotate dehydr 65.8 31 0.00067 30.7 7.6 62 4-83 88-156 (310)
77 PLN02803 beta-amylase 65.5 30 0.00066 33.0 7.6 40 40-80 109-155 (548)
78 cd04738 DHOD_2_like Dihydrooro 63.8 39 0.00084 30.3 7.9 103 7-128 127-237 (327)
79 PF08869 XisI: XisI protein; 63.7 3.9 8.5E-05 30.5 1.2 19 161-179 79-97 (111)
80 TIGR02102 pullulan_Gpos pullul 63.4 27 0.00059 36.7 7.5 29 32-60 616-644 (1111)
81 PLN00197 beta-amylase; Provisi 62.5 38 0.00083 32.5 7.7 40 40-80 129-175 (573)
82 KOG1552 Predicted alpha/beta h 61.1 15 0.00032 31.7 4.4 46 123-177 88-134 (258)
83 cd04739 DHOD_like Dihydroorota 60.5 56 0.0012 29.2 8.3 59 7-83 98-162 (325)
84 PLN02877 alpha-amylase/limit d 59.7 34 0.00073 35.4 7.3 47 33-79 534-580 (970)
85 PF00834 Ribul_P_3_epim: Ribul 58.8 48 0.001 27.5 7.0 63 46-130 75-137 (201)
86 PLN02960 alpha-amylase 58.4 40 0.00086 34.5 7.5 55 30-86 528-601 (897)
87 COG1908 FrhD Coenzyme F420-red 57.6 35 0.00076 25.8 5.3 46 39-86 79-124 (132)
88 PF12876 Cellulase-like: Sugar 56.2 24 0.00051 24.8 4.2 73 46-129 1-88 (88)
89 TIGR02100 glgX_debranch glycog 54.6 26 0.00056 34.9 5.6 49 32-80 315-365 (688)
90 PF07364 DUF1485: Protein of u 54.6 1E+02 0.0022 27.3 8.7 118 32-183 76-198 (292)
91 cd02933 OYE_like_FMN Old yello 53.8 1.1E+02 0.0023 27.7 9.0 26 35-61 150-175 (338)
92 PF07476 MAAL_C: Methylasparta 53.5 1.1E+02 0.0024 25.9 8.2 85 32-133 87-174 (248)
93 PRK09505 malS alpha-amylase; R 53.5 34 0.00075 34.0 6.2 29 31-59 434-462 (683)
94 PF02057 Glyco_hydro_59: Glyco 53.5 30 0.00066 34.0 5.6 75 3-86 122-200 (669)
95 PF14587 Glyco_hydr_30_2: O-Gl 53.4 44 0.00095 30.7 6.3 53 33-86 150-216 (384)
96 PRK10785 maltodextrin glucosid 52.5 32 0.0007 33.7 5.8 55 31-86 303-363 (598)
97 PF00724 Oxidored_FMN: NADH:fl 52.4 1E+02 0.0022 27.7 8.7 66 36-109 148-229 (341)
98 cd02931 ER_like_FMN Enoate red 52.1 50 0.0011 30.4 6.7 25 34-59 147-171 (382)
99 smart00633 Glyco_10 Glycosyl h 51.8 1.2E+02 0.0025 26.0 8.6 68 2-80 112-180 (254)
100 PF07745 Glyco_hydro_53: Glyco 51.7 51 0.0011 29.7 6.5 64 1-84 162-229 (332)
101 PRK10415 tRNA-dihydrouridine s 49.6 1.5E+02 0.0032 26.5 9.1 40 43-83 82-132 (321)
102 PF00128 Alpha-amylase: Alpha 49.1 34 0.00073 29.5 5.0 48 30-86 141-188 (316)
103 PF07745 Glyco_hydro_53: Glyco 48.9 72 0.0016 28.8 7.0 79 3-86 66-166 (332)
104 PRK03705 glycogen debranching 48.3 39 0.00086 33.5 5.6 30 31-60 309-338 (658)
105 COG3410 Uncharacterized conser 48.1 56 0.0012 26.2 5.3 47 29-78 143-189 (191)
106 PRK09441 cytoplasmic alpha-amy 47.9 48 0.001 31.4 6.0 46 31-84 206-251 (479)
107 PLN02161 beta-amylase 47.3 60 0.0013 30.9 6.3 42 37-80 117-165 (531)
108 PRK05286 dihydroorotate dehydr 47.3 48 0.001 30.0 5.7 103 7-128 136-246 (344)
109 COG2342 Predicted extracellula 46.4 78 0.0017 27.8 6.4 47 39-86 127-183 (300)
110 TIGR03849 arch_ComA phosphosul 45.9 1.4E+02 0.0029 25.6 7.8 126 36-181 69-194 (237)
111 PLN03244 alpha-amylase; Provis 45.5 83 0.0018 31.9 7.3 28 31-58 504-531 (872)
112 PRK14705 glycogen branching en 45.4 64 0.0014 34.4 6.9 55 31-86 877-948 (1224)
113 cd07321 Extradiol_Dioxygenase_ 45.2 25 0.00054 24.3 2.8 30 24-53 7-36 (77)
114 PRK01060 endonuclease IV; Prov 45.2 43 0.00094 28.9 5.0 45 40-85 14-58 (281)
115 PRK08005 epimerase; Validated 45.0 88 0.0019 26.2 6.5 64 45-130 75-138 (210)
116 PLN02705 beta-amylase 44.1 70 0.0015 31.2 6.3 42 37-80 268-316 (681)
117 PF07582 AP_endonuc_2_N: AP en 43.7 63 0.0014 20.8 4.2 39 41-80 3-42 (55)
118 PRK08091 ribulose-phosphate 3- 43.5 1.1E+02 0.0023 26.1 6.8 65 46-130 86-150 (228)
119 KOG2335 tRNA-dihydrouridine sy 40.7 99 0.0021 28.1 6.4 72 42-127 90-175 (358)
120 COG0036 Rpe Pentose-5-phosphat 40.1 1.4E+02 0.0031 25.1 7.0 62 47-130 80-141 (220)
121 cd00019 AP2Ec AP endonuclease 39.7 61 0.0013 27.9 5.1 23 40-62 12-34 (279)
122 KOG3111 D-ribulose-5-phosphate 38.9 2E+02 0.0043 23.9 7.3 62 47-130 83-144 (224)
123 PLN02905 beta-amylase 38.7 94 0.002 30.5 6.3 42 37-80 286-334 (702)
124 COG3867 Arabinogalactan endo-1 38.4 2.9E+02 0.0063 24.7 10.5 79 3-86 112-212 (403)
125 KOG2702 Predicted panthothenat 38.3 13 0.00027 31.8 0.5 75 6-80 115-206 (323)
126 PF05763 DUF835: Protein of un 38.2 81 0.0018 24.4 4.9 51 32-83 56-107 (136)
127 TIGR01839 PHA_synth_II poly(R) 38.0 70 0.0015 31.0 5.4 50 41-91 237-286 (560)
128 PLN02801 beta-amylase 38.0 1E+02 0.0022 29.4 6.3 41 39-80 38-85 (517)
129 TIGR01036 pyrD_sub2 dihydrooro 37.7 1.7E+02 0.0037 26.3 7.7 70 3-84 129-203 (335)
130 TIGR00736 nifR3_rel_arch TIM-b 37.6 1.1E+02 0.0024 26.1 6.0 89 7-127 66-168 (231)
131 PRK09722 allulose-6-phosphate 37.0 1E+02 0.0022 26.2 5.8 62 48-130 79-140 (229)
132 TIGR02456 treS_nterm trehalose 37.0 1.1E+02 0.0024 29.5 6.8 54 31-86 171-230 (539)
133 TIGR03234 OH-pyruv-isom hydrox 36.5 63 0.0014 27.4 4.6 20 40-59 16-35 (254)
134 PF04468 PSP1: PSP1 C-terminal 36.0 1.1E+02 0.0025 21.5 5.1 56 28-84 16-80 (88)
135 PRK08745 ribulose-phosphate 3- 35.9 1.4E+02 0.0029 25.3 6.4 63 46-130 80-142 (223)
136 COG1902 NemA NADH:flavin oxido 34.3 2.6E+02 0.0056 25.6 8.3 91 34-132 146-263 (363)
137 TIGR00542 hxl6Piso_put hexulos 33.9 68 0.0015 27.7 4.4 46 40-86 18-64 (279)
138 PF06745 KaiC: KaiC; InterPro 33.6 2.7E+02 0.0059 22.9 8.0 90 34-133 98-189 (226)
139 COG0042 tRNA-dihydrouridine sy 33.1 1.9E+02 0.0041 26.0 7.1 134 38-188 79-238 (323)
140 cd04502 SGNH_hydrolase_like_7 33.0 1.5E+02 0.0032 23.1 6.0 37 46-83 45-87 (171)
141 PRK08883 ribulose-phosphate 3- 32.9 1.5E+02 0.0032 24.9 6.1 63 46-130 76-138 (220)
142 TIGR02403 trehalose_treC alpha 31.9 1.8E+02 0.004 28.1 7.3 51 32-84 168-234 (543)
143 PLN03231 putative alpha-galact 31.6 1.8E+02 0.004 26.5 6.8 59 33-103 158-216 (357)
144 cd08578 GDPD_NUC-2_fungi Putat 31.6 74 0.0016 28.2 4.2 73 2-80 180-265 (300)
145 COG2876 AroA 3-deoxy-D-arabino 31.3 1.9E+02 0.004 25.3 6.3 62 4-80 210-279 (286)
146 COG5185 HEC1 Protein involved 31.2 49 0.0011 31.1 3.1 62 29-103 99-160 (622)
147 PLN02447 1,4-alpha-glucan-bran 31.2 48 0.001 33.4 3.3 28 31-58 363-390 (758)
148 COG3850 NarQ Signal transducti 30.5 3.2E+02 0.0069 26.5 8.2 75 25-103 434-508 (574)
149 COG5440 Uncharacterized conser 30.1 1.2E+02 0.0025 24.0 4.5 40 10-51 55-95 (161)
150 cd06592 GH31_glucosidase_KIAA1 30.0 72 0.0016 28.2 3.9 33 30-62 134-166 (303)
151 PRK13210 putative L-xylulose 5 29.2 1.2E+02 0.0025 26.1 5.1 46 40-86 18-64 (284)
152 PLN02361 alpha-amylase 29.0 1.6E+02 0.0035 27.3 6.1 44 31-83 152-196 (401)
153 PF01180 DHO_dh: Dihydroorotat 28.6 4E+02 0.0086 23.2 8.6 43 7-64 95-137 (295)
154 PRK13840 sucrose phosphorylase 28.5 1.9E+02 0.0041 27.7 6.6 54 30-85 166-225 (495)
155 PRK01222 N-(5'-phosphoribosyl) 28.4 1.5E+02 0.0033 24.6 5.4 39 41-80 166-207 (210)
156 cd07922 CarBa CarBa is the A s 28.1 69 0.0015 22.4 2.7 30 24-53 8-37 (81)
157 PF14307 Glyco_tran_WbsX: Glyc 27.9 70 0.0015 28.9 3.6 27 249-275 54-80 (345)
158 COG0429 Predicted hydrolase of 27.5 2.3E+02 0.005 25.6 6.5 47 37-84 90-146 (345)
159 PF01373 Glyco_hydro_14: Glyco 27.4 1.6E+02 0.0035 27.3 5.7 41 39-80 17-64 (402)
160 smart00733 Mterf Mitochondrial 27.3 60 0.0013 16.8 2.0 21 246-267 10-30 (31)
161 PTZ00445 p36-lilke protein; Pr 27.2 3.6E+02 0.0078 22.8 7.2 26 37-62 28-53 (219)
162 PF02055 Glyco_hydro_30: O-Gly 27.1 3.6E+02 0.0077 25.9 8.2 123 3-130 163-312 (496)
163 COG1891 Uncharacterized protei 27.1 3.5E+02 0.0076 22.1 9.0 167 32-268 6-182 (235)
164 PF03328 HpcH_HpaI: HpcH/HpaI 27.1 3.2E+02 0.0069 22.6 7.2 73 43-126 13-90 (221)
165 cd02911 arch_FMN Archeal FMN-b 26.5 2.5E+02 0.0054 23.8 6.5 55 8-80 72-137 (233)
166 PRK10558 alpha-dehydro-beta-de 26.5 1.2E+02 0.0026 26.1 4.6 37 42-80 31-67 (256)
167 PRK12677 xylose isomerase; Pro 26.4 2E+02 0.0043 26.5 6.3 45 40-86 33-79 (384)
168 PRK10128 2-keto-3-deoxy-L-rham 26.4 1.3E+02 0.0028 26.2 4.8 37 42-80 30-66 (267)
169 PRK14581 hmsF outer membrane N 26.2 2.8E+02 0.006 27.8 7.5 128 37-187 443-614 (672)
170 TIGR01163 rpe ribulose-phospha 25.7 2.4E+02 0.0051 22.9 6.2 66 43-130 71-136 (210)
171 PRK09989 hypothetical protein; 25.5 1.6E+02 0.0034 25.0 5.2 36 40-86 17-52 (258)
172 PRK13209 L-xylulose 5-phosphat 25.2 1.3E+02 0.0028 25.9 4.6 46 40-86 23-69 (283)
173 cd04722 TIM_phosphate_binding 25.1 3.3E+02 0.0072 21.2 9.4 69 44-129 77-145 (200)
174 PLN02355 probable galactinol-- 25.0 2.2E+02 0.0047 28.7 6.4 54 31-85 367-422 (758)
175 KOG1643 Triosephosphate isomer 24.9 3.1E+02 0.0066 23.0 6.3 48 5-60 116-164 (247)
176 PRK14057 epimerase; Provisiona 24.8 4E+02 0.0087 23.0 7.4 84 27-130 81-164 (254)
177 PLN02684 Probable galactinol-- 24.6 2.4E+02 0.0051 28.4 6.6 56 30-86 357-414 (750)
178 PRK10933 trehalose-6-phosphate 24.3 1.8E+02 0.0039 28.2 5.8 51 31-83 174-240 (551)
179 COG3243 PhaC Poly(3-hydroxyalk 23.8 1.7E+02 0.0037 27.4 5.1 51 40-91 128-179 (445)
180 PF01261 AP_endonuc_2: Xylose 23.3 86 0.0019 25.1 3.0 39 44-86 1-39 (213)
181 TIGR03239 GarL 2-dehydro-3-deo 23.2 1.6E+02 0.0034 25.3 4.7 37 42-80 24-60 (249)
182 PRK09856 fructoselysine 3-epim 23.2 2E+02 0.0043 24.5 5.4 44 40-86 15-59 (275)
183 cd08627 PI-PLCc_gamma1 Catalyt 23.1 1.9E+02 0.0041 24.6 5.0 60 41-108 33-102 (229)
184 smart00518 AP2Ec AP endonuclea 23.1 1.5E+02 0.0032 25.4 4.6 43 42-85 14-56 (273)
185 PRK06354 pyruvate kinase; Prov 22.9 6.5E+02 0.014 24.7 9.3 62 1-83 2-63 (590)
186 PRK05581 ribulose-phosphate 3- 22.8 3.2E+02 0.007 22.3 6.5 64 45-130 78-141 (220)
187 PRK05437 isopentenyl pyrophosp 22.7 3.9E+02 0.0084 24.2 7.3 99 2-129 114-219 (352)
188 COG0162 TyrS Tyrosyl-tRNA synt 22.4 1.9E+02 0.0042 26.8 5.3 64 5-80 61-138 (401)
189 cd00423 Pterin_binding Pterin 22.4 4.8E+02 0.011 22.3 7.6 22 156-177 150-171 (258)
190 PF07862 Nif11: Nitrogen fixat 22.4 1.5E+02 0.0033 18.0 3.3 28 26-53 10-42 (49)
191 COG3365 Uncharacterized protei 22.3 1.1E+02 0.0024 22.6 2.9 32 32-64 43-74 (118)
192 PRK08187 pyruvate kinase; Vali 22.3 4E+02 0.0087 25.5 7.5 70 6-105 132-201 (493)
193 COG3934 Endo-beta-mannanase [C 22.2 1.5E+02 0.0032 28.3 4.4 115 4-129 76-208 (587)
194 KOG1114 Tripeptidyl peptidase 22.2 3.8E+02 0.0083 28.0 7.5 65 5-84 333-398 (1304)
195 PRK11177 phosphoenolpyruvate-p 22.1 2.8E+02 0.006 27.2 6.6 92 36-133 367-458 (575)
196 KOG3035 Isoamyl acetate-hydrol 21.9 44 0.00096 28.1 1.0 28 255-282 154-181 (245)
197 cd06522 GH25_AtlA-like AtlA is 21.6 4E+02 0.0087 21.6 6.7 41 40-80 76-120 (192)
198 PLN02363 phosphoribosylanthran 21.6 2.1E+02 0.0045 24.8 5.1 40 41-80 211-253 (256)
199 PF07746 LigA: Aromatic-ring-o 21.5 99 0.0022 22.0 2.6 26 27-53 6-31 (88)
200 PRK03995 hypothetical protein; 21.5 2.2E+02 0.0048 24.8 5.2 71 5-79 177-261 (267)
201 PF13117 Cag12: Cag pathogenic 21.4 3.2E+02 0.0068 20.5 5.3 44 231-274 66-112 (113)
202 cd06600 GH31_MGAM-like This fa 21.4 1.2E+02 0.0027 26.9 3.8 34 30-63 129-162 (317)
203 cd00405 PRAI Phosphoribosylant 21.4 2.7E+02 0.0059 22.7 5.7 34 40-83 62-95 (203)
204 cd04724 Tryptophan_synthase_al 21.3 5.1E+02 0.011 21.9 8.9 65 43-129 96-161 (242)
205 PF10354 DUF2431: Domain of un 21.3 4.3E+02 0.0092 21.0 6.9 75 48-133 72-155 (166)
206 KOG4013 Predicted Cu2+ homeost 21.2 4.9E+02 0.011 21.7 6.7 58 2-68 54-111 (255)
207 PLN02334 ribulose-phosphate 3- 21.1 3.6E+02 0.0078 22.5 6.5 69 42-130 79-149 (229)
208 TIGR02631 xylA_Arthro xylose i 20.9 2.9E+02 0.0062 25.4 6.2 43 42-86 36-80 (382)
209 PRK02412 aroD 3-dehydroquinate 20.9 5.3E+02 0.012 22.0 12.1 51 2-61 68-119 (253)
210 PF15277 Sec3-PIP2_bind: Exocy 20.1 1.3E+02 0.0028 21.4 3.0 22 29-50 70-91 (91)
211 PLN02219 probable galactinol-- 20.0 2.8E+02 0.006 28.0 6.1 54 32-86 360-415 (775)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.4e-60 Score=432.79 Aligned_cols=268 Identities=32% Similarity=0.597 Sum_probs=239.4
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC----chhHhhHHHHHH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT----STDLFNIGLLFD 76 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~----~~~~~~~~~fl~ 76 (282)
+||+++|++||++|||||.. ++..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.||+
T Consensus 63 ~lk~~~p~lkvlisiGG~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~ 141 (362)
T cd02872 63 ALKEKNPNLKTLLAIGGWNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLK 141 (362)
T ss_pred HHHhhCCCceEEEEEcCCCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHH
Confidence 37899999999999999986 5668999999999999999999999999999999999999974 478899999999
Q ss_pred HHHHHHhhHHHhhccCCCccEEEEEEeccCCCC--CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCC--
Q 042934 77 EWRIAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG-- 152 (282)
Q Consensus 77 ~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~--~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~-- 152 (282)
+||+ +|+.. +++++||+++|+.+.. ..|++++|.++||+|+||+||++++| ...++|+|||+.....
T Consensus 142 ~lr~-~l~~~-------~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~ 212 (362)
T cd02872 142 ELRE-AFEPE-------APRLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTG 212 (362)
T ss_pred HHHH-HHHhh-------CcCeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCcc
Confidence 9999 99854 3469999999987654 56899999999999999999999987 4568999999853321
Q ss_pred -CCcccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCC-----CCCCCccchHHHHHhhhhCCCC
Q 042934 153 -GFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPA-----LHDSGLVTYKEINNHIKTYGPD 226 (282)
Q Consensus 153 -~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~y~~i~~~l~~~~~~ 226 (282)
....+++.+|+.|++.|+|++||+||||+||+.|++.+..+.++++|+.+++ +...|.++|.|||+++ ..+
T Consensus 213 ~~~~~~v~~~v~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~-- 289 (362)
T cd02872 213 DQKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG-- 289 (362)
T ss_pred ccccccHHHHHHHHHHcCCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--
Confidence 1246899999999999999999999999999999999888888888887654 2467899999999988 667
Q ss_pred eEEEEeCceeeEEEEeCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCCC
Q 042934 227 VQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281 (282)
Q Consensus 227 ~~~~~D~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~~ 281 (282)
+...||+.+.+||+|.+++||+|||++|++.|++|++++||||+++|+|++||++
T Consensus 290 ~~~~~D~~~~~~y~~~~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~ 344 (362)
T cd02872 290 WTVVWDDEQKVPYAYKGNQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFR 344 (362)
T ss_pred cEEEEeCCcceeEEEECCEEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCC
Confidence 9999999999999998899999999999999999999999999999999999964
No 2
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=7.3e-60 Score=416.29 Aligned_cols=232 Identities=46% Similarity=0.865 Sum_probs=213.0
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHH
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIA 81 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~ 81 (282)
||+++|++|+|+|||||+. +++.|+.++++++.|++||+++++++++|+|||||||||+|..++++.+|+.||++||+
T Consensus 60 ~k~~~~~lkvlisiGG~~~-~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~- 137 (299)
T cd02879 60 VKRKNPSVKTLLSIGGGGS-DSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRA- 137 (299)
T ss_pred HHHhCCCCeEEEEEeCCCC-CCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHH-
Confidence 6889999999999999986 57899999999999999999999999999999999999999877899999999999999
Q ss_pred HhhHHHhhccCCCccEEEEEEeccCCCC------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCc
Q 042934 82 ATKLEAKNSSRQQSQLILTARFHYSPPA------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFA 155 (282)
Q Consensus 82 ~l~~~~~~~g~~~~~~~ls~a~~~~~~~------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~ 155 (282)
+|+...+..| +++++||+++|+.+.. ..|++++|.++||||+||+||++++|....++|+|||+.+.. .
T Consensus 138 ~l~~~~~~~~--~~~~~ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~---~ 212 (299)
T cd02879 138 AVKDEARSSG--RPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNS---N 212 (299)
T ss_pred HHHHHhhccC--CCcEEEEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCC---C
Confidence 9997766666 5679999999876542 468899999999999999999999987767899999997654 5
Q ss_pred ccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEEEEeCce
Q 042934 156 RSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTY 235 (282)
Q Consensus 156 ~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~~~ 235 (282)
.+++.+|+.|++.|+|++||+||||+|||.|++ ||+.+
T Consensus 213 ~~~~~~v~~~~~~g~p~~KlvlGvp~YGr~~~~------------------------------------------~D~~~ 250 (299)
T cd02879 213 VSTDYGIKSWIKAGVPAKKLVLGLPLYGRAWTL------------------------------------------YDTTT 250 (299)
T ss_pred CCHHHHHHHHHHcCCCHHHEEEEeccccccccc------------------------------------------cCCCc
Confidence 689999999999999999999999999999952 78888
Q ss_pred eeEEEEeCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCCCC
Q 042934 236 EVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHNW 282 (282)
Q Consensus 236 ~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~~~ 282 (282)
.++|.+.+.+||+|||++|+++|++|++++||||+++|+|++||++|
T Consensus 251 ~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 251 VSSYVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred ceEEEEECCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEEeecCCccc
Confidence 89999988999999999999999999999999999999999999886
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=4.1e-59 Score=427.47 Aligned_cols=270 Identities=26% Similarity=0.467 Sum_probs=223.7
Q ss_pred CccccCCCCeEEEEEcCCCCCC----CccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC------------
Q 042934 1 TLKKENPSITILLSIGQGMDTN----YSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT------------ 64 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~----~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~------------ 64 (282)
+||+++|++|+|+|||||..++ ++.|+.++++++.|++||++++++|++|+|||||||||+|..
T Consensus 67 ~lk~~~p~lKvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~ 146 (413)
T cd02873 67 SLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSA 146 (413)
T ss_pred HHHhhCCCCeEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchh
Confidence 4899999999999999997521 457999999999999999999999999999999999999852
Q ss_pred ------------------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhhhccccEEE
Q 042934 65 ------------------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRNLNWVH 125 (282)
Q Consensus 65 ------------------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l~~~vD~v~ 125 (282)
++++++|+.||++||+ +|+.. .++|++++++.... ..||+++|.++||||+
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~d~~nf~~Ll~elr~-~l~~~---------~~~ls~av~~~~~~~~~~d~~~l~~~vD~in 216 (413)
T cd02873 147 WHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKN-ALRPD---------GLLLTLTVLPHVNSTWYFDVPAIANNVDFVN 216 (413)
T ss_pred hhhhhcccccccccCCCChhHHHHHHHHHHHHHH-Hhccc---------CcEEEEEecCCchhccccCHHHHhhcCCEEE
Confidence 3578999999999999 99743 38899988654333 4589999999999999
Q ss_pred eeeccccCCCCCC-CCCCCCcccCCCCCCCcccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCC-CCC--Ccccc
Q 042934 126 AVTASYYEPVSTN-FTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPED-NGI--GAAAA 201 (282)
Q Consensus 126 vm~yd~~~~~~~~-~~~~~spl~~~~~~~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~-~~~--~~~~~ 201 (282)
||+||++++|..+ .++|+|||+.........+++.+|+.|++.|+|++||+||||||||.|+++.+.. .+. .+++.
T Consensus 217 lMtYD~~g~~~~~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~ 296 (413)
T cd02873 217 LATFDFLTPERNPEEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETD 296 (413)
T ss_pred EEEecccCCCCCCCccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCC
Confidence 9999999987653 6899999986543222568999999999999999999999999999999876532 221 12333
Q ss_pred -----CCCCCCCCccchHHHHHhhhhCC------CCeEEEEeCcee-eEEEEe-------CCEEEEeCCHHHHHHHHHHH
Q 042934 202 -----GPALHDSGLVTYKEINNHIKTYG------PDVQVMYNSTYE-VNYCSI-------EKIWFGFDDVEAVRMKVAYA 262 (282)
Q Consensus 202 -----~~~~~~~g~~~y~~i~~~l~~~~------~~~~~~~D~~~~-~~y~~~-------~~~~i~ydd~~S~~~K~~~~ 262 (282)
|+.+.++|.++|.|||+.+...+ ..+...||++.. ++|+|. +++||+|||++|++.|++||
T Consensus 297 g~~~~G~~~~~~g~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~ 376 (413)
T cd02873 297 GPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYA 376 (413)
T ss_pred CCCCCCCCcCCCccccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHH
Confidence 33446678999999999775421 115567898876 689982 35799999999999999999
Q ss_pred hhCCCceEEEEeecCCCC
Q 042934 263 KEKKLRGYFVWRVDYDDH 280 (282)
Q Consensus 263 ~~~glgGv~~W~l~~Dd~ 280 (282)
+++||||+|+|++++||+
T Consensus 377 ~~~gLgGv~~W~l~~DD~ 394 (413)
T cd02873 377 KAKGLGGVALFDLSLDDF 394 (413)
T ss_pred HhCCCceEEEEeeecCcC
Confidence 999999999999999997
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.6e-57 Score=408.75 Aligned_cols=265 Identities=33% Similarity=0.595 Sum_probs=232.9
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc-hhHhhHHHHHHHHH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS-TDLFNIGLLFDEWR 79 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~-~~~~~~~~fl~~lr 79 (282)
+||+++|++|+|++||||.. +..|+.++++++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||
T Consensus 59 ~l~~~~~~~kvl~svgg~~~--s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr 136 (334)
T smart00636 59 ALKKKNPGLKVLLSIGGWTE--SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELR 136 (334)
T ss_pred HHHHhCCCCEEEEEEeCCCC--CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHH
Confidence 36888999999999999975 6899999999999999999999999999999999999999753 57889999999999
Q ss_pred HHHhhHHHhhccCCCccEEEEEEeccCCCC--CccC-hhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcc
Q 042934 80 IAATKLEAKNSSRQQSQLILTARFHYSPPA--NSYL-LNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR 156 (282)
Q Consensus 80 ~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~--~~~~-~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~ 156 (282)
+ +|++..+. +++++||+++|+.+.. ..++ +++|.++||+|+||+||++++|. ..+||+|||+.........
T Consensus 137 ~-~l~~~~~~----~~~~~lsi~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~ 210 (334)
T smart00636 137 E-ALDKEGAE----GKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKY 210 (334)
T ss_pred H-HHHHhccc----CCceEEEEEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCc
Confidence 9 99764111 2469999999987664 3478 59999999999999999999874 4689999998644322356
Q ss_pred cHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCC-----CCCCccchHHHHHhhhhCCCCeEEEE
Q 042934 157 STDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPAL-----HDSGLVTYKEINNHIKTYGPDVQVMY 231 (282)
Q Consensus 157 ~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~l~~~~~~~~~~~ 231 (282)
+++.+|+.|++.|+|++||+||||+||+.|++.++.+.++++|+.|++. ..++.++|.+||+.+ + +...|
T Consensus 211 ~v~~~v~~~~~~gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~ 285 (334)
T smart00636 211 NVDYAVKYYLCKGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVW 285 (334)
T ss_pred cHHHHHHHHHHcCCCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEE
Confidence 8999999999999999999999999999999998888888898877643 367889999999865 5 89999
Q ss_pred eCceeeEEEEe-C-CEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCC
Q 042934 232 NSTYEVNYCSI-E-KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278 (282)
Q Consensus 232 D~~~~~~y~~~-~-~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~D 278 (282)
|+.+.++|.|. + ++||+|||++|+++|++|++++|||||++|+|++|
T Consensus 286 d~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 286 DDTAKAPYAYNPGTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred cCCCceeEEEECCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 99999999994 3 59999999999999999999999999999999998
No 5
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-57 Score=417.67 Aligned_cols=273 Identities=30% Similarity=0.581 Sum_probs=234.4
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCC-CchhHhhHHHHHHHHH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPN-TSTDLFNIGLLFDEWR 79 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~-~~~~~~~~~~fl~~lr 79 (282)
++|+++|+||+|+|||||.. +++.|+.+++|++.|+.||++++++|++|+|||||||||+|. .+.++.+|..|++|||
T Consensus 114 ~~k~~n~~vK~llSIGG~~~-ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr 192 (432)
T KOG2806|consen 114 TAKSSNPTVKVMISIGGSHG-NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELR 192 (432)
T ss_pred HHHhhCCCceEEEEecCCCC-CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHH
Confidence 36889999999999999943 589999999999999999999999999999999999999995 4489999999999999
Q ss_pred HHHhhHHHhhccCCCccEEEEEEeccCCC-C--CccChhhhhccccEEEeeeccccCCCCCC-CCCCCCcccCCCC-CCC
Q 042934 80 IAATKLEAKNSSRQQSQLILTARFHYSPP-A--NSYLLNSRQRNLNWVHAVTASYYEPVSTN-FTAPPAALYGSSS-GGF 154 (282)
Q Consensus 80 ~~~l~~~~~~~g~~~~~~~ls~a~~~~~~-~--~~~~~~~l~~~vD~v~vm~yd~~~~~~~~-~~~~~spl~~~~~-~~~ 154 (282)
. +|.+..+..+ .+...|+.++.+.+. . ..||++.|.+++||||||+|||+++|..+ .+||+||||.+.. ...
T Consensus 193 ~-~~~~~~~~~~--~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~ 269 (432)
T KOG2806|consen 193 S-AFARETLKSP--DTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNP 269 (432)
T ss_pred H-HHHHHhhccC--CccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCccccc
Confidence 9 9998866655 344345555544433 2 77999999999999999999999998763 7999999997643 333
Q ss_pred cccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCC------CCCCccchHHHHHhhhhCCCCeE
Q 042934 155 ARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPAL------HDSGLVTYKEINNHIKTYGPDVQ 228 (282)
Q Consensus 155 ~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~y~~i~~~l~~~~~~~~ 228 (282)
..+++..+++|+..|.||+||+|||||||+.|++++...+ ++.+..+++. ...|.++|.|||+.....+ .
T Consensus 270 ~~Nvd~~~ky~~~~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~ 345 (432)
T KOG2806|consen 270 KMNVDSLLKYWTEKGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---V 345 (432)
T ss_pred CcchhhhHHHHhhcCCCchheEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---C
Confidence 6799999999999999999999999999999999987665 4444443322 3568999999999554332 6
Q ss_pred EEEeCceeeEEEEe--CCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCCC
Q 042934 229 VMYNSTYEVNYCSI--EKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281 (282)
Q Consensus 229 ~~~D~~~~~~y~~~--~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~~ 281 (282)
..||+..++||+|. +++||+|||++|++.|++||++++|||+++|+|++||+.
T Consensus 346 ~~~d~~~~~~Y~~~~~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~ 400 (432)
T KOG2806|consen 346 THWDEETQTPYLYNIPYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDES 400 (432)
T ss_pred ceecCCceeeeEEecCCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCC
Confidence 99999999999998 999999999999999999999999999999999999974
No 6
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-57 Score=395.69 Aligned_cols=269 Identities=23% Similarity=0.419 Sum_probs=220.9
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC---------chhHhhH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT---------STDLFNI 71 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~---------~~~~~~~ 71 (282)
.||+++|++|+++|||||.. |..|+.+..+.+.|++|+.++++||++|+|||||||||||.+ +++.++|
T Consensus 119 ~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d~~ny 196 (441)
T COG3325 119 DLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANY 196 (441)
T ss_pred HHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcccHHHH
Confidence 37999999999999999986 999999999999999999999999999999999999999974 5678999
Q ss_pred HHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCC
Q 042934 72 GLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS 150 (282)
Q Consensus 72 ~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~ 150 (282)
+.||++||+ +|+.++..+| ++++||+|.|+.+.. ...+..++.++|||||+|||||+|.| ...+|||+|||+..
T Consensus 197 ~~Ll~eLR~-~LD~a~~edg---r~Y~LTiA~~as~~~l~~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~Ly~~~ 271 (441)
T COG3325 197 VLLLQELRK-KLDKAGVEDG---RHYQLTIAAPASKDKLEGLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAALYGTP 271 (441)
T ss_pred HHHHHHHHH-HHhhcccccC---ceEEEEEecCCchhhhhcccHHHHHHHHhhhheeeeeccccc-ccccccccccccCC
Confidence 999999999 9999988887 459999999998887 77888999999999999999999997 56689999999411
Q ss_pred C------CC----CcccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCC----CCccccC--C--CCCCCCccc
Q 042934 151 S------GG----FARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNG----IGAAAAG--P--ALHDSGLVT 212 (282)
Q Consensus 151 ~------~~----~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~----~~~~~~~--~--~~~~~g~~~ 212 (282)
. .. ........++.....++||+||+||+|||||.|..+.....+ ..+...+ + ++..++.+.
T Consensus 272 ~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~n~~ 351 (441)
T COG3325 272 KDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGNGD 351 (441)
T ss_pred CCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccccccC
Confidence 1 10 112222456666678899999999999999999988765432 2222221 1 222222222
Q ss_pred --hH---HHH-HhhhhCCCCeEEEEeCceeeEEEE--eCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCC
Q 042934 213 --YK---EIN-NHIKTYGPDVQVMYNSTYEVNYCS--IEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278 (282)
Q Consensus 213 --y~---~i~-~~l~~~~~~~~~~~D~~~~~~y~~--~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~D 278 (282)
|. .+. ......+ +...||+.+.+||+| .++.||+|||++||++|++||++++|||+|+|.+++|
T Consensus 352 ~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD 423 (441)
T COG3325 352 KDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD 423 (441)
T ss_pred ccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC
Confidence 21 221 1223345 999999999999999 7889999999999999999999999999999999999
No 7
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.2e-56 Score=398.71 Aligned_cols=233 Identities=27% Similarity=0.484 Sum_probs=209.6
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC---------chhHhhH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT---------STDLFNI 71 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~---------~~~~~~~ 71 (282)
+||+++|++|||+|||||+. +..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|
T Consensus 77 ~lk~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~ 154 (322)
T cd06548 77 KLKQKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENF 154 (322)
T ss_pred HHHHhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHH
Confidence 37899999999999999985 689999999999999999999999999999999999999974 4788999
Q ss_pred HHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCC
Q 042934 72 GLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSS 150 (282)
Q Consensus 72 ~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~ 150 (282)
+.||++||+ +|++.+...+ ++++||+++|+.+.. ..+++++|.++||+|+||+||++++|. ..+||+|||+...
T Consensus 155 ~~ll~~Lr~-~l~~~~~~~~---~~~~Ls~av~~~~~~~~~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~ 229 (322)
T cd06548 155 TLLLKELRE-ALDALGAETG---RKYLLTIAAPAGPDKLDKLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASP 229 (322)
T ss_pred HHHHHHHHH-HHHHhhhccC---CceEEEEEccCCHHHHhcCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCC
Confidence 999999999 9987655544 459999999887765 568899999999999999999999975 6799999998643
Q ss_pred C-CCCcccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEE
Q 042934 151 S-GGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQV 229 (282)
Q Consensus 151 ~-~~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~ 229 (282)
. .....+++.+++.|++.|+|++||+||||+|||.|++ +..
T Consensus 230 ~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~ 271 (322)
T cd06548 230 ADPPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTR 271 (322)
T ss_pred CCCCCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEE
Confidence 2 1125689999999999999999999999999999953 467
Q ss_pred EEeCceeeEEEEeC--CEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCC
Q 042934 230 MYNSTYEVNYCSIE--KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278 (282)
Q Consensus 230 ~~D~~~~~~y~~~~--~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~D 278 (282)
.||+.+.+||+|.+ ++||+|||++|++.|++||+++||||+++|+|++|
T Consensus 272 ~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 272 YWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred EEcCCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 99999999999955 89999999999999999999999999999999998
No 8
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=8.7e-56 Score=397.65 Aligned_cols=256 Identities=16% Similarity=0.239 Sum_probs=213.5
Q ss_pred CCeEEEEEcCCCCCCC----ccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC----------chhHhhHHH
Q 042934 8 SITILLSIGQGMDTNY----SIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT----------STDLFNIGL 73 (282)
Q Consensus 8 ~~kvl~siGg~~~~~~----~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~----------~~~~~~~~~ 73 (282)
++|||+|||||..+.. ..|+.++ ++++|++|++++++++++|+|||||||||+|.. ++++++|+.
T Consensus 61 ~lkvllsiGG~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ 139 (345)
T cd02878 61 GVKKILSFGGWDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLE 139 (345)
T ss_pred CcEEEEEEeCCCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHH
Confidence 4999999999986211 2488888 999999999999999999999999999999853 357899999
Q ss_pred HHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccC---C
Q 042934 74 LFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYG---S 149 (282)
Q Consensus 74 fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~---~ 149 (282)
||++||+ +|+. .++||+++|+.+.. ..|+++++.++||||+||+||++++|... +.+++|... +
T Consensus 140 ll~elr~-~l~~----------~~~ls~a~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~w~~~-~~~~~p~~p~~~~ 207 (345)
T cd02878 140 FLKLLKS-KLPS----------GKSLSIAAPASYWYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYG-NKWASPGCPAGNC 207 (345)
T ss_pred HHHHHHH-HhCc----------CcEEEEEcCCChhhhcCCcHHHHHhhCcEEEEEeecccCCcCcc-CCcCCCCCCcccc
Confidence 9999999 9963 38999999887665 56999999999999999999999998532 344444211 0
Q ss_pred C-CCCCcccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCC--------CCCCccchHHHHHhh
Q 042934 150 S-SGGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPAL--------HDSGLVTYKEINNHI 220 (282)
Q Consensus 150 ~-~~~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~y~~i~~~l 220 (282)
. ......+++.+|+.|++.|+|++||+||||+|||.|++.++.++++++|+.|++. ...+.+.|.++|..+
T Consensus 208 ~~~~~~~~~~~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~ 287 (345)
T cd02878 208 LRSHVNKTETLDALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIID 287 (345)
T ss_pred cccCCCchhHHHHHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHH
Confidence 0 0001235889999999999999999999999999999999999999999987642 233455669999754
Q ss_pred -hhCCCCeEEEEeCceeeEEE-EeCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCC
Q 042934 221 -KTYGPDVQVMYNSTYEVNYC-SIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278 (282)
Q Consensus 221 -~~~~~~~~~~~D~~~~~~y~-~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~D 278 (282)
...+ +...||+.+.+||+ |.+.+||+|||++|++.|++||+++||||+++|+|++|
T Consensus 288 ~~~~~--~~~~~d~~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 288 ISKSK--NKRWYDTDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred hccCC--CcEEEecCCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 4456 89999999999997 56779999999999999999999999999999999987
No 9
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=4.1e-53 Score=381.15 Aligned_cols=252 Identities=19% Similarity=0.266 Sum_probs=209.3
Q ss_pred cccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--chhHhhHHHHHHHHHH
Q 042934 3 KKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--STDLFNIGLLFDEWRI 80 (282)
Q Consensus 3 k~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--~~~~~~~~~fl~~lr~ 80 (282)
+++.+|+||+++ |+.. ...++++++|++||+++++++++|||||||||||+|.. ++++++|+.|+++||+
T Consensus 72 ~A~~~~v~v~~~-~~~~-------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~ 143 (358)
T cd02875 72 YAHSKGVRLVLK-GDVP-------LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTK 143 (358)
T ss_pred HHHHcCCEEEEE-CccC-------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHH
Confidence 468899999987 3221 23688999999999999999999999999999999964 4678999999999999
Q ss_pred HHhhHHHhhccCCCccEEEEEEeccCCCC--C-ccChhhhhccccEEEeeeccccCC-CC-CCCCCCCCcccCCCCCCCc
Q 042934 81 AATKLEAKNSSRQQSQLILTARFHYSPPA--N-SYLLNSRQRNLNWVHAVTASYYEP-VS-TNFTAPPAALYGSSSGGFA 155 (282)
Q Consensus 81 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~--~-~~~~~~l~~~vD~v~vm~yd~~~~-~~-~~~~~~~spl~~~~~~~~~ 155 (282)
+|++. ++.++||+++|+.+.. . .|++++|+++||+|+||+||+|++ |. ...++|+||+.
T Consensus 144 -~l~~~-------~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~-------- 207 (358)
T cd02875 144 -AFKKE-------NPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS-------- 207 (358)
T ss_pred -HHhhc-------CCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch--------
Confidence 99865 4568999999876543 2 389999999999999999999975 54 34678999864
Q ss_pred ccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCC-----CCCCCccccCCC-C-CCCCccchHHHHHhhhhCCCCeE
Q 042934 156 RSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPE-----DNGIGAAAAGPA-L-HDSGLVTYKEINNHIKTYGPDVQ 228 (282)
Q Consensus 156 ~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~-----~~~~~~~~~~~~-~-~~~g~~~y~~i~~~l~~~~~~~~ 228 (282)
+++.+++.|+..|+|++||+||+|+|||+|++.+.. |..++.|..|.. + ..++.++|.++|++++..+ +.
T Consensus 208 -~v~~~v~~~~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~ 284 (358)
T cd02875 208 -QTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GG 284 (358)
T ss_pred -hHHHHHHHHHHcCCCHHHeEEEeCCCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--Cc
Confidence 789999999999999999999999999999976543 112333333322 1 1235799999999887776 78
Q ss_pred EEEeCceeeEEE-Ee---C-CEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCCC
Q 042934 229 VMYNSTYEVNYC-SI---E-KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN 281 (282)
Q Consensus 229 ~~~D~~~~~~y~-~~---~-~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~~ 281 (282)
..||+.+++||+ |. + .+||+|||++|++.|++|++++||||+++|+||+||++
T Consensus 285 ~~wD~~~~~py~~y~d~~g~~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~ 342 (358)
T cd02875 285 RLWDSEQKSPFYNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYS 342 (358)
T ss_pred eeeccccccceEEEecCCCcEEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeccccccC
Confidence 999999999998 42 2 27999999999999999999999999999999999974
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.5e-52 Score=377.52 Aligned_cols=267 Identities=33% Similarity=0.586 Sum_probs=230.1
Q ss_pred ccccCCCCeEEEEEcCCCCCCCc-cchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc---hhHhhHHHHHHH
Q 042934 2 LKKENPSITILLSIGQGMDTNYS-IYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS---TDLFNIGLLFDE 77 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~---~~~~~~~~fl~~ 77 (282)
+|+++|++|||+||||+.. +. .|+.++.+++.|++|+++|+++|++|+|||||||||++... ++..+|..||++
T Consensus 67 ~~~~~~~~kvllsigg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~ 144 (343)
T PF00704_consen 67 LKAKNPGVKVLLSIGGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKE 144 (343)
T ss_dssp HHHHHTT-EEEEEEEETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHH
T ss_pred HHhhccCceEEEEeccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhh
Confidence 6788999999999999986 55 99999999999999999999999999999999999999762 489999999999
Q ss_pred HHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcc
Q 042934 78 WRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFAR 156 (282)
Q Consensus 78 lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~ 156 (282)
||+ +|++..... ++++||+++|+.+.. ..++++.+.++||+|+||+||++++|.. .++|++|+++........
T Consensus 145 L~~-~l~~~~~~~----~~~~ls~a~p~~~~~~~~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~ 218 (343)
T PF00704_consen 145 LRK-ALKRANRSG----KGYILSVAVPPSPDYYDKYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYY 218 (343)
T ss_dssp HHH-HHHHHHHHH----STSEEEEEEECSHHHHTTHHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSS
T ss_pred hhh-hhccccccc----ceeEEeeccccccccccccccccccccccccccccccCCCCccc-ccccccccccCCccCCCc
Confidence 999 998753322 149999999887665 5568999999999999999999998755 789999998544311156
Q ss_pred cHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccc---cCCCCCCCCccchHHHHHhhhhCCCCeEEEEeC
Q 042934 157 STDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAA---AGPALHDSGLVTYKEINNHIKTYGPDVQVMYNS 233 (282)
Q Consensus 157 ~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~ 233 (282)
+++.+++.|+..|+|++||+||||+||+.|++.........++. .+..+...+.++|.++|..+..++ +...||+
T Consensus 219 ~~~~~v~~~~~~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~ 296 (343)
T PF00704_consen 219 SVDSAVQYWIKAGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDD 296 (343)
T ss_dssp SHHHHHHHHHHTTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEET
T ss_pred eeeeehhhhccccCChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEee
Confidence 89999999999999999999999999999999888777766654 334456678999999999998788 9999999
Q ss_pred ceeeEEEEeC--CEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCC
Q 042934 234 TYEVNYCSIE--KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYD 278 (282)
Q Consensus 234 ~~~~~y~~~~--~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~D 278 (282)
.+.++|++.. ++||+|||++|++.|++|++++||||+++|+|++|
T Consensus 297 ~~~~~y~~~~~~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 297 TAQAPYAYNDDKKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp TTTEEEEEETTTTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred cccceEEEecCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 9999999955 79999999999999999999999999999999998
No 11
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=4.3e-51 Score=363.72 Aligned_cols=240 Identities=20% Similarity=0.344 Sum_probs=206.7
Q ss_pred cCCCCeEEEEEcCCC---CCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHH
Q 042934 5 ENPSITILLSIGQGM---DTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIA 81 (282)
Q Consensus 5 ~~~~~kvl~siGg~~---~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~ 81 (282)
+.+++||+++|||+. . +++.++.++++++.|++|++++++++++|+|||||||||++.. +++.+|+.||++||.
T Consensus 55 ~~~~~kv~~~i~~~~~~~~-~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~- 131 (313)
T cd02874 55 KRRGVKPLLVITNLTNGNF-DSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSD- 131 (313)
T ss_pred HHCCCeEEEEEecCCCCCC-CHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHH-
Confidence 345999999999986 3 4678899999999999999999999999999999999999875 889999999999999
Q ss_pred HhhHHHhhccCCCccEEEEEEeccCCC-------CCccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCC
Q 042934 82 ATKLEAKNSSRQQSQLILTARFHYSPP-------ANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGF 154 (282)
Q Consensus 82 ~l~~~~~~~g~~~~~~~ls~a~~~~~~-------~~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~ 154 (282)
+|++. +++|++++++... ...|++++|+++||+|+||+||++++| +.+||+||+.
T Consensus 132 ~l~~~---------~~~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~------- 193 (313)
T cd02874 132 RLHPA---------GYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG------- 193 (313)
T ss_pred Hhhhc---------CcEEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH-------
Confidence 99743 3788888766432 256899999999999999999999875 4579999874
Q ss_pred cccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEEEEeCc
Q 042934 155 ARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNST 234 (282)
Q Consensus 155 ~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~~ 234 (282)
.++..+++++ .|+|++||+||||+||+.|++.+.. ...++.++|.++|+++...+ +...||+.
T Consensus 194 --~~~~~~~~~~-~gvp~~KlvlGip~YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~ 256 (313)
T cd02874 194 --WVERVLQYAV-TQIPREKILLGIPLYGYDWTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEE 256 (313)
T ss_pred --HHHHHHHHHH-hcCCHHHEEEeecccccccccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcc
Confidence 6788887665 8899999999999999999865311 11246788999999998888 99999999
Q ss_pred eeeEEE-E-e---CCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCC-CC
Q 042934 235 YEVNYC-S-I---EKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDH-NW 282 (282)
Q Consensus 235 ~~~~y~-~-~---~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~-~~ 282 (282)
+++||+ | . ..+||+|||++|++.|++|++++||||+++|+|++||. .|
T Consensus 257 ~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD~~~w 310 (313)
T cd02874 257 AQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLEDPQNW 310 (313)
T ss_pred cCCCcEEEEeCCCCEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCCcccc
Confidence 999987 4 2 35899999999999999999999999999999999986 55
No 12
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=3.8e-51 Score=364.56 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=200.2
Q ss_pred ccccCCCCeEE--EEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEE-eecCCC---chhHhhHHHHH
Q 042934 2 LKKENPSITIL--LSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFA-WTAPNT---STDLFNIGLLF 75 (282)
Q Consensus 2 lk~~~~~~kvl--~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid-~e~~~~---~~~~~~~~~fl 75 (282)
||+++|++||+ +++|||.. +.|+.+++++++|++|++++++++++|+||||||| ||+|.. ++++.+|+.||
T Consensus 60 lk~~~~~lkvlp~i~~gg~~~---~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l 136 (318)
T cd02876 60 VRKANKNIKILPRVLFEGWSY---QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLV 136 (318)
T ss_pred HHhhCCCcEEEeEEEECCCCH---HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHH
Confidence 68899999999 77799963 57999999999999999999999999999999999 999964 35889999999
Q ss_pred HHHHHHHhhHHHhhccCCCccEEEEEEeccCCC-------CCccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccC
Q 042934 76 DEWRIAATKLEAKNSSRQQSQLILTARFHYSPP-------ANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYG 148 (282)
Q Consensus 76 ~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~-------~~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~ 148 (282)
++||+ +|++. ++.|++++|+... +..|++++|+++||+|+||+||++++ +.+||+||++
T Consensus 137 ~el~~-~l~~~---------~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~- 202 (318)
T cd02876 137 IHLGE-TLHSA---------NLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS- 202 (318)
T ss_pred HHHHH-HHhhc---------CCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH-
Confidence 99999 99854 3677777765432 24689999999999999999999975 5689999986
Q ss_pred CCCCCCcccHHHHHHHHHHCC-CCCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCe
Q 042934 149 SSSGGFARSTDQVLKAWIERG-LPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDV 227 (282)
Q Consensus 149 ~~~~~~~~~i~~~v~~~~~~g-~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~ 227 (282)
+++.+++++++.| +|++||+||||+|||.|++.. .+ +.+++.+.+++++..+ +
T Consensus 203 --------~v~~~v~~~~~~~~vp~~KlvlGip~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~ 256 (318)
T cd02876 203 --------WVRSCLELLLPESGKKRAKILLGLNFYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--P 256 (318)
T ss_pred --------HHHHHHHHHHhcCCCCHHHeEEeccccccccccCC-----CC-----------ceeehHHHHHHHHhcC--C
Confidence 7999999999987 999999999999999997643 11 2234455666666667 8
Q ss_pred EEEEeCceeeE-EEEeC---CEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCC
Q 042934 228 QVMYNSTYEVN-YCSIE---KIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDH 280 (282)
Q Consensus 228 ~~~~D~~~~~~-y~~~~---~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~ 280 (282)
...||+.+..+ |.|.+ ++||+|||++|++.|++||+++|| |+++|+|++++.
T Consensus 257 ~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~~ 312 (318)
T cd02876 257 KLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGLD 312 (318)
T ss_pred CceeccCCCcceEEEecCCCcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCch
Confidence 89999996555 67743 799999999999999999999999 999999999864
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=3.3e-46 Score=329.37 Aligned_cols=235 Identities=15% Similarity=0.134 Sum_probs=193.1
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHH
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIA 81 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~ 81 (282)
+|++.|.++++.+++|+.. ++..|+.++++++.|++|++++++++++|+|||||||||++.. +++.+|+.||++||.
T Consensus 56 ~k~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~- 132 (298)
T cd06549 56 AKAHPKVLPLVQNISGGAW-DGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRR- 132 (298)
T ss_pred HHcCCceeEEEEecCCCCC-CHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHH-
Confidence 4667788899999988765 4567999999999999999999999999999999999999875 899999999999999
Q ss_pred HhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHH
Q 042934 82 ATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQV 161 (282)
Q Consensus 82 ~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~ 161 (282)
+|+.. ++.|++++|+.+. .|+++.|.++||+|+||+||+++++ +.++|.+|+. .++..
T Consensus 133 ~l~~~---------~~~lsv~v~~~~~--~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~---------~~~~~ 190 (298)
T cd06549 133 RLPAQ---------GKQLTVTVPADEA--DWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD---------WFESN 190 (298)
T ss_pred Hhhhc---------CcEEEEEecCCCC--CCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh---------hHHHH
Confidence 99853 3899999886543 5899999999999999999999764 3356666542 56666
Q ss_pred HHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEEEEeCceeeE-EE
Q 042934 162 LKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTYEVN-YC 240 (282)
Q Consensus 162 v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~~~~~~-y~ 240 (282)
+... ..|+|++||+||||+||++|++... ...++..++..++.+.+ ....||+....| |.
T Consensus 191 ~~~~-~~~vp~~KlvlGip~YG~~w~~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 251 (298)
T cd06549 191 LAQA-VKKLPPEKLIVALGSYGYDWTKGGN----------------TKAISSEAAWLLAAHAS--AAVKFDDKASNATYF 251 (298)
T ss_pred HHHH-HhCCCHHHEEEEecccCccccCCCC----------------CcccCHHHHHHHHHHcC--CcceecccccCCceE
Confidence 6654 4679999999999999999976321 12344566666666666 778898877666 45
Q ss_pred E----eCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCC
Q 042934 241 S----IEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDH 280 (282)
Q Consensus 241 ~----~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~ 280 (282)
| +..++|+|+|++|++.|+++++++||+|+++|+|++||+
T Consensus 252 ~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 252 FYDDEGVSHEVWMLDAVTLFNQLKAVQRLGPAGVALWRLGSEDP 295 (298)
T ss_pred EEcCCCcEEEEEeccHHHHHHHHHHHHHcCCCcEEEEeccCCCC
Confidence 5 224789999999999999999999999999999999975
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.2e-40 Score=287.94 Aligned_cols=189 Identities=24% Similarity=0.431 Sum_probs=164.0
Q ss_pred ccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHh
Q 042934 4 KENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 4 ~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l 83 (282)
.+.+++||++||||+.. +.+..+++++++|++|++++++++++|+|||||||||+|.. . +.+|..|+++||+ +|
T Consensus 55 ~~~~~~kvl~sigg~~~---~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-~-~~~~~~fv~~Lr~-~l 128 (253)
T cd06545 55 AHAHNVKILISLAGGSP---PEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-T-FGDYLVFIRALYA-AL 128 (253)
T ss_pred HHhCCCEEEEEEcCCCC---CcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-c-HhHHHHHHHHHHH-HH
Confidence 34579999999999864 34677999999999999999999999999999999999975 3 7899999999999 99
Q ss_pred hHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHH
Q 042934 84 KLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLK 163 (282)
Q Consensus 84 ~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~ 163 (282)
+.. +++||+++++... .+...++.+++|+|+||+||++++|....++|++|+. .++..++
T Consensus 129 ~~~---------~~~lt~av~~~~~--~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~---------~~~~~v~ 188 (253)
T cd06545 129 KKE---------GKLLTAAVSSWNG--GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD---------DAVNDLN 188 (253)
T ss_pred hhc---------CcEEEEEccCccc--ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH---------hHHHHHH
Confidence 743 3789999876432 2234677899999999999999998766789999864 6888999
Q ss_pred HHHHCCC-CCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEEEEeCceeeEEEEe
Q 042934 164 AWIERGL-PADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTYEVNYCSI 242 (282)
Q Consensus 164 ~~~~~g~-p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~~~~~~y~~~ 242 (282)
+|+..|+ |++||+||||+||++|
T Consensus 189 ~~~~~g~ip~~KlvlGlp~YG~~w-------------------------------------------------------- 212 (253)
T cd06545 189 YWNERGLASKDKLVLGLPFYGYGF-------------------------------------------------------- 212 (253)
T ss_pred HHHHcCCCCHHHEEEEeCCccccc--------------------------------------------------------
Confidence 9999998 9999999999999987
Q ss_pred CCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecCCCC
Q 042934 243 EKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDH 280 (282)
Q Consensus 243 ~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~ 280 (282)
+|+++.++.+|.++++++ +||+|+|++++|..
T Consensus 213 -----~~~~~~~~~~~~~~~~~~-~gG~~~w~~~~d~~ 244 (253)
T cd06545 213 -----YYNGIPTIRNKVAFAKQN-YGGVMIWELSQDAS 244 (253)
T ss_pred -----cCCCHHHHHHHHHHHHHh-cCeEEEEeccCCCC
Confidence 278888999999999999 99999999999964
No 15
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=3.7e-37 Score=270.87 Aligned_cols=223 Identities=17% Similarity=0.252 Sum_probs=186.7
Q ss_pred CCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEE
Q 042934 22 NYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTA 101 (282)
Q Consensus 22 ~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~ 101 (282)
+.+..+.+|.++..++++++++++.++++|+.||.||+|.... .|++.|..|++++|. +|+.. .+.+++
T Consensus 178 ~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~-~l~~~---------G~~~si 246 (423)
T COG3858 178 GGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRD-ALHSG---------GYTVSI 246 (423)
T ss_pred chHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHH-HhccC---------CeEEEE
Confidence 3456799999999999999999999999999999999999886 999999999999999 99854 499999
Q ss_pred EeccCC-------CCCccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHHHCCCCCCc
Q 042934 102 RFHYSP-------PANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADK 174 (282)
Q Consensus 102 a~~~~~-------~~~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~~~g~p~~K 174 (282)
|+|+.. |...||+..+.+.+|+|.||+||.|.+| +.+|+.||+. .++..+++-+.. +|++|
T Consensus 247 Avaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~---------~vr~~ieya~T~-iP~~K 314 (423)
T COG3858 247 AVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG---------WVRKVIEYALTV-IPAEK 314 (423)
T ss_pred EecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch---------hHhhhhhhhhee-cchHH
Confidence 998865 2366899999999999999999999775 5578888864 566666665554 99999
Q ss_pred eeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEEEEeCceeeEEEE----eC-CEEEEe
Q 042934 175 LVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTYEVNYCS----IE-KIWFGF 249 (282)
Q Consensus 175 ivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~~~~~~y~~----~~-~~~i~y 249 (282)
|+||+|+||++|.+..... +-+ ... ++..+...+....+ ..+.||..+++||+| ++ ++++||
T Consensus 315 v~mGip~YGYDW~~~y~~~-g~~---------~~a-~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~y~D~eg~~h~VWf 381 (423)
T COG3858 315 VMMGIPLYGYDWTLPYDPL-GYL---------ARA-ISPDEAIDIANRYN--ATIQYDATSQSPFFYYVDKEGRYHEVWF 381 (423)
T ss_pred eEEccccccccccCCCCCC-cce---------eee-cCcchhhhhhcccC--CccCcCccccCceEEEEcCCCceEEEEc
Confidence 9999999999998754221 111 112 44455555555566 899999999999997 33 689999
Q ss_pred CCHHHHHHHHHHHhhCCCceEEEEeecCCCC
Q 042934 250 DDVEAVRMKVAYAKEKKLRGYFVWRVDYDDH 280 (282)
Q Consensus 250 dd~~S~~~K~~~~~~~glgGv~~W~l~~Dd~ 280 (282)
||.+|+.+|++++|++||.||+.|.|+++|.
T Consensus 382 eD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p 412 (423)
T COG3858 382 EDARSFQTKLDLIKEYGLRGVSYWVLGQEDP 412 (423)
T ss_pred CchHHHHHHHHHHHHcCCceEEEEEecCcch
Confidence 9999999999999999999999999999864
No 16
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.97 E-value=3.7e-31 Score=222.46 Aligned_cols=116 Identities=26% Similarity=0.436 Sum_probs=101.6
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCch--hHhhHHHHHHHHH
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTST--DLFNIGLLFDEWR 79 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~--~~~~~~~fl~~lr 79 (282)
+|+++|++||++||||+.. ...+ .++++++.|++|++++++++++|+|||||||||+|.... ++.+|+.|+++||
T Consensus 58 l~~~~~g~kv~~sigg~~~--~~~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr 134 (210)
T cd00598 58 LASKKPGLKVLISIGGWTD--SSPF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELR 134 (210)
T ss_pred HHHhCCCCEEEEEEcCCCC--CCCc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHH
Confidence 5677799999999999975 3344 889999999999999999999999999999999998633 4899999999999
Q ss_pred HHHhhHHHhhccCCCccEEEEEEeccCCCC-C-ccChhhhhccccEEEeeecc
Q 042934 80 IAATKLEAKNSSRQQSQLILTARFHYSPPA-N-SYLLNSRQRNLNWVHAVTAS 130 (282)
Q Consensus 80 ~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~-~~~~~~l~~~vD~v~vm~yd 130 (282)
+ +|+. .+++||+++|+.+.. . .++++++.+++|++++|+||
T Consensus 135 ~-~l~~---------~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 135 S-ALGA---------ANYLLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred H-Hhcc---------cCcEEEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 9 9973 249999999887765 2 38999999999999999997
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.96 E-value=3.2e-29 Score=214.86 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=116.8
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
+||+++|++|||+|||||+.+.+..+....+....|++|+++++++|++|||||||||||+|. .++.+|+.|+++||.
T Consensus 63 ~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~ 140 (253)
T cd06544 63 SIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLIT 140 (253)
T ss_pred HHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHH
Confidence 489999999999999999862122233333444556777999999999999999999999985 578999999999999
Q ss_pred HHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHH
Q 042934 81 AATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTD 159 (282)
Q Consensus 81 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~ 159 (282)
+|++. .+++.+++.+.... ..++.+.+.+++|+|++|+|++++.+. +.. .....
T Consensus 141 -~l~~~---------~~lt~a~vap~~~~~~~~y~~~~~~~~d~id~~~~qfy~~~~-----~~~----------~~~~~ 195 (253)
T cd06544 141 -ELKNN---------GVIKVASIAPSEDAEQSHYLALYNAYGDYIDYVNYQFYNYGV-----PTT----------VAKYV 195 (253)
T ss_pred -Hhhhc---------CCeEEEEecCCccccccccHHHHHHhhCceeEEEhhhhCCCC-----CCC----------HHHHH
Confidence 99753 24444444443333 345688889999999999999997632 111 11223
Q ss_pred HHHHHHHHCCCCCCceeeecccceeee
Q 042934 160 QVLKAWIERGLPADKLVMCLPFYGYAW 186 (282)
Q Consensus 160 ~~v~~~~~~g~p~~Kivlglp~yG~~~ 186 (282)
..++.|. .++|++||++|+|++++.|
T Consensus 196 ~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 196 EFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred HHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 4455554 4599999999999999776
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.94 E-value=3.9e-26 Score=196.86 Aligned_cols=139 Identities=16% Similarity=0.231 Sum_probs=110.0
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhh
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATK 84 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~ 84 (282)
|++++|||+|||||+. ..|+.+.++++.|++|++++++++++|+|||||||||+|.. ..+|..|+++||+ ++.
T Consensus 69 ~~~g~KVllSiGG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr~-~~~ 141 (256)
T cd06546 69 QSSGVKVMGMLGGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLRS-DFG 141 (256)
T ss_pred HhCCCEEEEEECCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHHH-HhC
Confidence 5799999999999974 34888888999999999999999999999999999999853 4689999999999 984
Q ss_pred HHHhhccCCCccEEEEEEeccCC------CCCccChhhhh----ccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCC
Q 042934 85 LEAKNSSRQQSQLILTARFHYSP------PANSYLLNSRQ----RNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGF 154 (282)
Q Consensus 85 ~~~~~~g~~~~~~~ls~a~~~~~------~~~~~~~~~l~----~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~ 154 (282)
+.++||+++++.. .+..+++..+. .++||+++|.||.++.- .
T Consensus 142 ----------~~~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~--------~---------- 193 (256)
T cd06546 142 ----------PDFIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSM--------S---------- 193 (256)
T ss_pred ----------CCcEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCc--------c----------
Confidence 3488999865431 12446776664 59999999999865431 0
Q ss_pred cccHHHHHHHHHHCCCCCCceeeeccc
Q 042934 155 ARSTDQVLKAWIERGLPADKLVMCLPF 181 (282)
Q Consensus 155 ~~~i~~~v~~~~~~g~p~~Kivlglp~ 181 (282)
+. .....|+..++|++||++|+|+
T Consensus 194 --~~-~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 194 --SP-SDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred --CH-HHHHHHHHcCCCcccEEEEEec
Confidence 01 1223455678999999999996
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.94 E-value=2.4e-25 Score=197.72 Aligned_cols=152 Identities=21% Similarity=0.315 Sum_probs=110.3
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc----hhHhhHHHHHHHHHH
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS----TDLFNIGLLFDEWRI 80 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~----~~~~~~~~fl~~lr~ 80 (282)
|..++|||+||||+.. + ..+++++.|++|++++++++++|+|||||||||+|... ++..+|+.||++||.
T Consensus 70 q~~G~KVllSiGG~~~--~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~ 143 (312)
T cd02871 70 QAKGKKVLISIGGANG--H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKD 143 (312)
T ss_pred HHCCCEEEEEEeCCCC--c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHH
Confidence 4578999999999964 2 24778899999999999999999999999999998652 477999999999999
Q ss_pred HHhhHHHhhccCCCccEEEEEEeccCCCC----------Ccc--ChhhhhccccEEEeeeccccCCCCCCCCCCCCcccC
Q 042934 81 AATKLEAKNSSRQQSQLILTARFHYSPPA----------NSY--LLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYG 148 (282)
Q Consensus 81 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~----------~~~--~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~ 148 (282)
++. ++++||+++.+.... ..| ...++..++|+|+||.||.++.+ ++...-+.
T Consensus 144 -~~~----------~~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~-----~~~~~~~~ 207 (312)
T cd02871 144 -HYG----------PNFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMG-----GCDGQSYS 207 (312)
T ss_pred -HcC----------CCeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcc-----cccccCCc
Confidence 984 359999996543111 113 35678889999999999977542 11111111
Q ss_pred CCCCCCcccHHHHHHHHHHCC-----------CCCCceeeecccc
Q 042934 149 SSSGGFARSTDQVLKAWIERG-----------LPADKLVMCLPFY 182 (282)
Q Consensus 149 ~~~~~~~~~i~~~v~~~~~~g-----------~p~~Kivlglp~y 182 (282)
.. ......++...+..+ +|++||+||+|+.
T Consensus 208 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 208 -QG---TADFLVALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred -cc---hhHHHHHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 11 112333333344444 8999999999984
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=188.16 Aligned_cols=233 Identities=14% Similarity=0.145 Sum_probs=185.1
Q ss_pred CccccCCCCeEEEEE--cCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEE-eecCCCchhHhhHHHHHHH
Q 042934 1 TLKKENPSITILLSI--GQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFA-WTAPNTSTDLFNIGLLFDE 77 (282)
Q Consensus 1 ~lk~~~~~~kvl~si--Gg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid-~e~~~~~~~~~~~~~fl~~ 77 (282)
+||++.++++++--+ ..|. +..+..++.+++.|++..+.++.+++++||||+.++ |....+.-.-.-...|++.
T Consensus 135 alRk~~~~l~ivPR~~fd~~~---~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~h 211 (392)
T KOG2091|consen 135 ALRKSGKDLHIVPRFYFDEFT---SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEH 211 (392)
T ss_pred HHHHhCCCceeeceehhhhcc---chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHH
Confidence 478999999987443 5554 578999999999999999999999999999999998 5543321111334567778
Q ss_pred HHHHHhhHHHhhccCCCccEEEEEEeccCCCC--------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCC
Q 042934 78 WRIAATKLEAKNSSRQQSQLILTARFHYSPPA--------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGS 149 (282)
Q Consensus 78 lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~--------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~ 149 (282)
|.+ +++.+ .+++-..+||.... ..-+++.|.+.+|.+.+||||+.+. ..+|++||+.
T Consensus 212 l~k-~Lhkq---------~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~-- 276 (392)
T KOG2091|consen 212 LGK-ALHKQ---------ELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE-- 276 (392)
T ss_pred HHH-HHHHh---------heEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH--
Confidence 888 88743 36666666662221 2236778899999999999999864 4579999976
Q ss_pred CCCCCcccHHHHHHHHHHCCCCCCceeeecccceeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEE
Q 042934 150 SSGGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQV 229 (282)
Q Consensus 150 ~~~~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~ 229 (282)
+++.++..+-....-+.||.+||-|||++|...+ ..+.|+-....++++... ...
T Consensus 277 -------wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gd----------------g~~~IT~~rYL~lLk~~k--~~~ 331 (392)
T KOG2091|consen 277 -------WIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGD----------------GGEAITAKRYLQLLKGEK--SVF 331 (392)
T ss_pred -------HHHHHHHHhCCccccccceeEeeeccccccccCC----------------CCCceeHHHHHHHHhccC--cce
Confidence 8999998865555666899999999999996411 126778889999999888 899
Q ss_pred EEeCceeeEEE-E----eCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEeecC
Q 042934 230 MYNSTYEVNYC-S----IEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDY 277 (282)
Q Consensus 230 ~~D~~~~~~y~-~----~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~l~~ 277 (282)
.||+++...++ | ++++.|.|.+..|+..++++|++.|+ ||+||++||
T Consensus 332 ~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gv-gISIWe~Gq 383 (392)
T KOG2091|consen 332 KFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELRIELARELGV-GISIWEYGQ 383 (392)
T ss_pred eeccccchhheeeeccCCCceEEEecchHhHHHHHHHHHHhCC-ceEeeeccC
Confidence 99999988877 5 45799999999999999999999998 999999987
No 21
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.90 E-value=1.7e-22 Score=175.73 Aligned_cols=146 Identities=19% Similarity=0.147 Sum_probs=104.1
Q ss_pred ccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHH------------HHcCCCeEEEEeecCCCchhHhhH
Q 042934 4 KENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIA------------RLYGFQGLDFAWTAPNTSTDLFNI 71 (282)
Q Consensus 4 ~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l------------~~~~~DGidid~e~~~~~~~~~~~ 71 (282)
.|.+++||||||||++. +..+ ++++.|++|+++++.+. .+++|||||||||+|.. .+|
T Consensus 68 cq~~G~KVlLSIGG~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~ 137 (280)
T cd02877 68 CQSKGKKVLLSIGGAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENY 137 (280)
T ss_pred HHHCCCEEEEEccCCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCH
Confidence 46789999999999975 3323 78899999999998875 25679999999999874 689
Q ss_pred HHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhh-ccccEEEeeeccccCCCCCCCCCCCCcccCCC
Q 042934 72 GLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQ-RNLNWVHAVTASYYEPVSTNFTAPPAALYGSS 150 (282)
Q Consensus 72 ~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~-~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~ 150 (282)
..|+++||+ .++.. . .++++||+|+++... ..+....+. ..+|+|+||.||..+- ..+ ..
T Consensus 138 ~~l~~~LR~-~~~~~----~--~~~~~LTaAPq~~~~-d~~~~~~i~~~~~D~i~vqfYn~~~c--------~~~---~~ 198 (280)
T cd02877 138 DALAKRLRS-LFASD----P--SKKYYLTAAPQCPYP-DASLGDAIATGLFDFIFVQFYNNPCC--------SYA---SG 198 (280)
T ss_pred HHHHHHHHH-Hhhcc----c--CCceEEEeccccCCc-chhHHHHHccCccCEEEEEEecCccc--------ccc---cc
Confidence 999999999 88642 1 256999999665322 233344555 4899999999996431 100 00
Q ss_pred CCCCcccHHHHHHHHHHCCCCC---Cceeeecccc
Q 042934 151 SGGFARSTDQVLKAWIERGLPA---DKLVMCLPFY 182 (282)
Q Consensus 151 ~~~~~~~i~~~v~~~~~~g~p~---~Kivlglp~y 182 (282)
. ........+.|... ++. .||+||||..
T Consensus 199 ~---~~~~~~~~~~w~~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 199 N---ASGFNFNWDTWTSW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred c---cchhhhHHHHHHHh-cccCCCceEEEecccC
Confidence 0 11223345556655 565 8999999974
No 22
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.90 E-value=7.2e-23 Score=177.22 Aligned_cols=142 Identities=15% Similarity=0.061 Sum_probs=110.3
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC------chhHhhHHHHHHHH
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT------STDLFNIGLLFDEW 78 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~------~~~~~~~~~fl~~l 78 (282)
|.+|+|||+||||+.. ...| ....+++.|++|++++++++++|||||||||||++.. +.+..+|..|+++|
T Consensus 61 ~~kG~KVl~sigg~~~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~L 137 (255)
T cd06542 61 QAKGTKVLLSILGNHL--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKEL 137 (255)
T ss_pred hhCCCEEEEEECCCCC--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHH
Confidence 5679999999999875 4444 3466788999999999999999999999999999864 23678999999999
Q ss_pred HHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccH
Q 042934 79 RIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARST 158 (282)
Q Consensus 79 r~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i 158 (282)
|+ +++. .+++|+++.++..... +.+++.+++||+++|+|+..+.. . . .
T Consensus 138 r~-~~~~---------~~kllt~~~~~~~~~~--~~~~~~~~vDyv~~~~y~~~~~~----~--~-----------~--- 185 (255)
T cd06542 138 RK-YMGP---------TDKLLTIDGYGQALSN--DGEEVSPYVDYVIYQYYGSSSSS----T--Q-----------R--- 185 (255)
T ss_pred HH-HhCc---------CCcEEEEEecCCchhc--CHHHHHHhCCEEEeeccCCCCcc----C--C-----------c---
Confidence 99 9952 2589999976544322 67899999999999999754321 0 0 0
Q ss_pred HHHHHHHHHCCCCCCceeeeccccee
Q 042934 159 DQVLKAWIERGLPADKLVMCLPFYGY 184 (282)
Q Consensus 159 ~~~v~~~~~~g~p~~Kivlglp~yG~ 184 (282)
.......|+|++|+++|+++++.
T Consensus 186 ---~~~~~~~g~~~~k~i~~~~~~~~ 208 (255)
T cd06542 186 ---NWNTNSPKIPPEKMVYTESFEEE 208 (255)
T ss_pred ---ccccccCCCCHHHceeeeeeecc
Confidence 01112467999999999999863
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.81 E-value=2.2e-19 Score=157.32 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=88.6
Q ss_pred CCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchh---HhhHHHHHHHHHHHH
Q 042934 6 NPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTD---LFNIGLLFDEWRIAA 82 (282)
Q Consensus 6 ~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~---~~~~~~fl~~lr~~~ 82 (282)
..|+||++|+|||.. . . +..+...|++|++++.+++.+|+|||||||||++.. .+ .+++.+.|++|++ +
T Consensus 65 ~~G~kViiS~GG~~g--~-~---~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~-~ 136 (294)
T cd06543 65 AAGGDVIVSFGGASG--T-P---LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQK-E 136 (294)
T ss_pred HcCCeEEEEecCCCC--C-c---cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHH-H
Confidence 346899999999975 2 2 333778999999999999999999999999999875 44 4778888888888 7
Q ss_pred hhHHHhhccCCCccEEEEEEeccCCCC---CccChhhhhc----cccEEEeeeccccCC
Q 042934 83 TKLEAKNSSRQQSQLILTARFHYSPPA---NSYLLNSRQR----NLNWVHAVTASYYEP 134 (282)
Q Consensus 83 l~~~~~~~g~~~~~~~ls~a~~~~~~~---~~~~~~~l~~----~vD~v~vm~yd~~~~ 134 (282)
+. .+.|++++|..+.- .++++-+... .+|+||||+|||++.
T Consensus 137 ~p-----------~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 137 YP-----------DLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred CC-----------CcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeeeeecCCCC
Confidence 63 48999999876653 3456666666 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=6.3e-14 Score=116.11 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=81.2
Q ss_pred CCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--chhHhhHHHHHHHHHHHHh
Q 042934 6 NPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--STDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 6 ~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--~~~~~~~~~fl~~lr~~~l 83 (282)
..|--|+||+||... +-.| ....-++|+++|++++++|||||+|||.|+..- .+.+.-..+.+|.+|. .-
T Consensus 96 aeGkavllsLGGAdg------hIeL-~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~-hy 167 (332)
T COG3469 96 AEGKAVLLSLGGADG------HIEL-KAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKD-HY 167 (332)
T ss_pred ccCcEEEEEccCccc------eEEe-ccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHH-HH
Confidence 345668899999864 1112 223368999999999999999999999997642 2333456677777777 66
Q ss_pred hHHHhhccCCCccEEEEEEeccCCCC---Ccc--ChhhhhccccEEEeeeccccCC
Q 042934 84 KLEAKNSSRQQSQLILTARFHYSPPA---NSY--LLNSRQRNLNWVHAVTASYYEP 134 (282)
Q Consensus 84 ~~~~~~~g~~~~~~~ls~a~~~~~~~---~~~--~~~~l~~~vD~v~vm~yd~~~~ 134 (282)
+.. ++++.||++... |.. ..| .+.++..+.|+|+.+-|+..|.
T Consensus 168 k~~-------Gk~f~itMAPEf-PYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 168 KNQ-------GKNFFITMAPEF-PYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred Hhc-------CCceEEEecCCC-ceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 544 578999998433 222 233 3668889999999999998764
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.18 E-value=4.5e-10 Score=98.35 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=97.9
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHH-------c---CCCeEEEEeecCCCchhHhhHHHH
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARL-------Y---GFQGLDFAWTAPNTSTDLFNIGLL 74 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~-------~---~~DGidid~e~~~~~~~~~~~~~f 74 (282)
+..|+|||||+||..+ ...+++.+.-+.|++.+.+.... + -+||+|||.|.- ....|..|
T Consensus 100 QS~GiKVlLSLGG~~G------nYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g----~~~~ysaL 169 (568)
T KOG4701|consen 100 QSNGIKVLLSLGGYNG------NYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKG----TNTAYSAL 169 (568)
T ss_pred HhcCeEEEEeccCccc------ceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecC----CcchHHHH
Confidence 5679999999999865 23567778889999999987633 2 279999999943 34679999
Q ss_pred HHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhh-hccccEEEeeeccccCCCCCCCCCCCCcccCCCCCC
Q 042934 75 FDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSR-QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGG 153 (282)
Q Consensus 75 l~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l-~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~ 153 (282)
.+.||. .|... .+++.|+.+..++.+..-. -..| .+-.||+.|+.|+-.. ... ....
T Consensus 170 A~~L~~-~Fa~~-------~r~yYLsaAPQCP~PD~~~-G~aL~~~~fDf~~IQFYNN~~-------CS~----SsG~-- 227 (568)
T KOG4701|consen 170 AKRLLE-IFASD-------PRRYYLSAAPQCPVPDHTL-GKALSENSFDFLSIQFYNNST-------CSG----SSGS-- 227 (568)
T ss_pred HHHHHH-HHccC-------CceEEeccCCCCCCCchhh-hhhhhccccceEEEEeecCCC-------ccc----ccCc--
Confidence 999999 88653 5679999997765443111 1223 3558999999986311 000 0000
Q ss_pred CcccHHHHHHHHHHCCCCCCc---eeeecccc
Q 042934 154 FARSTDQVLKAWIERGLPADK---LVMCLPFY 182 (282)
Q Consensus 154 ~~~~i~~~v~~~~~~g~p~~K---ivlglp~y 182 (282)
++...+..+++ ... +-++| ++||||.-
T Consensus 228 ~Q~~fDsW~~y-a~~-~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 228 RQSTFDAWVEY-AED-SAYNKNTSLFLGLPGH 257 (568)
T ss_pred ccccHHHHHHH-Hhh-hcccccceEEeeccCC
Confidence 14466666554 333 56666 99999963
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.86 E-value=1.8e-08 Score=90.29 Aligned_cols=151 Identities=8% Similarity=0.010 Sum_probs=103.3
Q ss_pred ccCCCCeEEEEEc-CCCCCCCccchhhhCC-hHHHHHHHHHHHHHHHHcCCCeEEEEeecCC-CchhHhhHHHHHHHHHH
Q 042934 4 KENPSITILLSIG-QGMDTNYSIYSSMVSN-SSHRKSFIDCSIRIARLYGFQGLDFAWTAPN-TSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 4 ~~~~~~kvl~siG-g~~~~~~~~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidid~e~~~-~~~~~~~~~~fl~~lr~ 80 (282)
++.+||||+-.|- -|.. ..+.++.++.+ ++.+.++++.|+++++.|||||+.||+|... .+++.+++..|+++|++
T Consensus 55 AHknGV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~ 133 (339)
T cd06547 55 AHRNGVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLKA 133 (339)
T ss_pred HHhcCCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHHH
Confidence 4678999997773 2222 35678889988 9999999999999999999999999999887 56889999999999999
Q ss_pred HHhhHHHhhccCCCccEEE-EEEeccCCCC-------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCC
Q 042934 81 AATKLEAKNSSRQQSQLIL-TARFHYSPPA-------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG 152 (282)
Q Consensus 81 ~~l~~~~~~~g~~~~~~~l-s~a~~~~~~~-------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~ 152 (282)
++++. .+...| --........ ...+.+-+ +.+|-+ +..|. |..
T Consensus 134 -~~~~~-------~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~-FlNY~----W~~--------------- 184 (339)
T cd06547 134 -KLHEN-------VPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGI-FLNYW----WTE--------------- 184 (339)
T ss_pred -HHhhc-------CCCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcce-eEecC----CCc---------------
Confidence 99854 233333 2222111111 11222222 556654 33342 211
Q ss_pred CCcccHHHHHHHHHHCCCCCCceeeecccceeeee
Q 042934 153 GFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWR 187 (282)
Q Consensus 153 ~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~ 187 (282)
...+.+++.....|..+.+|.+||=.+|+...
T Consensus 185 ---~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 ---ESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred ---chHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 13444556666788889999999998887754
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.18 E-value=2.7e-05 Score=69.33 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEE-eecCCC-----------------------chh-------HhhHHHHHHHHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFA-WTAPNT-----------------------STD-------LFNIGLLFDEWR 79 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid-~e~~~~-----------------------~~~-------~~~~~~fl~~lr 79 (282)
..|+.|+-.++-+.+++++|.+|||.|| +-+|.. +.+ +++...|+++++
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999 455421 233 578899999999
Q ss_pred HHHhhHHHhhccCCCccEEEEEEeccCC--CCCc--cChhhh--hccccEEEeeeccccCCCCCCCCCCCCcccCCCCCC
Q 042934 80 IAATKLEAKNSSRQQSQLILTARFHYSP--PANS--YLLNSR--QRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGG 153 (282)
Q Consensus 80 ~~~l~~~~~~~g~~~~~~~ls~a~~~~~--~~~~--~~~~~l--~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~ 153 (282)
. ++++. ++.+.+++++-+.. .+.. -|...- ..++|++..|.|-..-+ ..
T Consensus 214 ~-~ik~~-------kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~------~~----------- 268 (311)
T PF02638_consen 214 D-AIKAI-------KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFS------HF----------- 268 (311)
T ss_pred H-HHHHh-------CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccc------hh-----------
Confidence 9 99987 78899999854333 1211 233332 47899999999942100 01
Q ss_pred CcccHHHHHHHHHHCCCCC-Cceeeecccceee
Q 042934 154 FARSTDQVLKAWIERGLPA-DKLVMCLPFYGYA 185 (282)
Q Consensus 154 ~~~~i~~~v~~~~~~g~p~-~Kivlglp~yG~~ 185 (282)
....+..+..|.+.-.+. -+|.+|+.+|-..
T Consensus 269 -~~~~~~~~~~w~~~~~~~~v~ly~G~~~y~~~ 300 (311)
T PF02638_consen 269 -TAPYEQLAKWWAKQVKPTNVHLYIGLALYKVG 300 (311)
T ss_pred -HHHHHHHHHHHHHhhcCCCceEEEccCcCCCC
Confidence 235667777777664443 4899999998643
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.10 E-value=1.2e-05 Score=71.35 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=90.6
Q ss_pred ccCCCCeEEEEE-cCCCCCCCccchhhhC-ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc-hhHhhHHHHHHHHHH
Q 042934 4 KENPSITILLSI-GQGMDTNYSIYSSMVS-NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS-TDLFNIGLLFDEWRI 80 (282)
Q Consensus 4 ~~~~~~kvl~si-Gg~~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~-~~~~~~~~fl~~lr~ 80 (282)
++.+|||||-.| -.|.. +......++. ++.....+++.++++++-|||||.-|++|.+... ....++..|+++|++
T Consensus 51 AHrnGV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~~ 129 (311)
T PF03644_consen 51 AHRNGVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLRK 129 (311)
T ss_dssp HHHTT--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHHH
T ss_pred HHhcCceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHHH
Confidence 466899999766 12222 3567888888 8888899999999999999999999999988764 678999999999999
Q ss_pred HHhhHHHhhccCCCccEEEEEEe-ccCCCC---CccCh--hhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCC
Q 042934 81 AATKLEAKNSSRQQSQLILTARF-HYSPPA---NSYLL--NSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGF 154 (282)
Q Consensus 81 ~~l~~~~~~~g~~~~~~~ls~a~-~~~~~~---~~~~~--~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~ 154 (282)
++++. ....++--.. ...-.. ..++- ....+.+|-+- ..|. |.
T Consensus 130 -~~~~~-------~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iF-lNY~----W~------------------ 178 (311)
T PF03644_consen 130 -EAHEN-------PGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIF-LNYN----WN------------------ 178 (311)
T ss_dssp -HHHHT--------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEE-E-S------S------------------
T ss_pred -HhhcC-------CCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceee-EecC----CC------------------
Confidence 88751 1112222221 111000 11100 01134555542 2221 21
Q ss_pred cccHHHHHHHHHHCCCCCCceeeecccceee
Q 042934 155 ARSTDQVLKAWIERGLPADKLVMCLPFYGYA 185 (282)
Q Consensus 155 ~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~ 185 (282)
...++.+++...+.+.+|.+|.+||=.+||.
T Consensus 179 ~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 2257778888888999999999999999988
No 29
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.95 E-value=0.00018 Score=57.99 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHHHHc-CCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCC
Q 042934 32 NSSHRKSFIDCSIRIARLY-GFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPAN 110 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~-~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~ 110 (282)
+++..++..+.+.++-..- ..-||.|||..+. .....|..|+++||+ +|. .++.||++.=+ .+..
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~-~LP----------~~~~LSIT~L~-dW~~ 87 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQ-RLP----------PDYRLSITALP-DWLS 87 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHH-hCC----------CCceEeeEEeh-hhhc
Confidence 4555566666666665553 5799999999765 566899999999999 995 45888888432 2222
Q ss_pred cc-ChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHHHCCCCCCceeeecccce
Q 042934 111 SY-LLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVMCLPFYG 183 (282)
Q Consensus 111 ~~-~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG 183 (282)
.- -++.+...||-+++|+| .|. +..+ ....-+..+.+.. --.-+|+|.||
T Consensus 88 ~~~~L~~L~~~VDE~VlQ~y--qGl-------~d~~-----------~~~~yl~~l~~l~---~PFriaLp~yG 138 (181)
T PF11340_consen 88 SPDWLNALPGVVDELVLQVY--QGL-------FDPP-----------NYARYLPRLARLT---LPFRIALPQYG 138 (181)
T ss_pred CchhhhhHhhcCCeeEEEee--cCC-------CCHH-----------HHHHHHHHHhcCC---CCeEEecCcCC
Confidence 22 37888999999999999 221 1111 2233344444443 55779999999
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.11 E-value=0.0082 Score=53.28 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEe-ecCCC------------ch--hHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEE
Q 042934 37 KSFIDCSIRIARLYGFQGLDFAW-TAPNT------------ST--DLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTA 101 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid~-e~~~~------------~~--~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~ 101 (282)
..+.-.|++-+.+.|||+|.||+ .+|.. .. -......||+..|+ +++.. +..||+
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~-~l~~~---------~v~vSa 192 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYARE-ELHPY---------GVPVSA 192 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHH-HHhHc---------CCCEEE
Confidence 44555688888889999999997 78861 01 23678999999999 99744 378898
Q ss_pred EeccCCCC------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcc
Q 042934 102 RFHYSPPA------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAAL 146 (282)
Q Consensus 102 a~~~~~~~------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl 146 (282)
.+.+.... .+-+++.|+++||+|.-|.|-=| |..+..|...|-
T Consensus 193 DVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~ 241 (316)
T PF13200_consen 193 DVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPD 241 (316)
T ss_pred EecccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCcc
Confidence 87654332 44689999999999999998433 444445555444
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=96.95 E-value=0.013 Score=52.98 Aligned_cols=81 Identities=10% Similarity=0.151 Sum_probs=69.8
Q ss_pred ccCCCCeEEEE-EcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHH
Q 042934 4 KENPSITILLS-IGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAA 82 (282)
Q Consensus 4 ~~~~~~kvl~s-iGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~ 82 (282)
++.+||||+-. |..|.. +...-..++.+.+.-++.++.++++.+-+||||==|+.|.........++..|++.|.+ .
T Consensus 120 AHrHGV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt~-~ 197 (526)
T KOG2331|consen 120 AHRHGVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLTK-V 197 (526)
T ss_pred hhhcCceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHHH-H
Confidence 46789999966 577775 56778889999999999999999999999999999999977665667899999999999 8
Q ss_pred hhHH
Q 042934 83 TKLE 86 (282)
Q Consensus 83 l~~~ 86 (282)
++..
T Consensus 198 ~~~~ 201 (526)
T KOG2331|consen 198 LHSS 201 (526)
T ss_pred Hhhc
Confidence 8743
No 32
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.22 Score=43.39 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEe-ecCCCc---------------hhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEE
Q 042934 39 FIDCSIRIARLYGFQGLDFAW-TAPNTS---------------TDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTAR 102 (282)
Q Consensus 39 f~~~i~~~l~~~~~DGidid~-e~~~~~---------------~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a 102 (282)
+--+|.+-+.++|||.|.||+ .+|... +..+.+..||.=.|+ +|. .-||+.
T Consensus 197 YNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE-~l~------------vpIS~D 263 (400)
T COG1306 197 YNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYARE-ELE------------VPISAD 263 (400)
T ss_pred hhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHH-hcc------------cceEEE
Confidence 344677778899999999998 677631 223567788888888 775 677888
Q ss_pred eccCCCC------CccChhhhhccccEEEeeecccc
Q 042934 103 FHYSPPA------NSYLLNSRQRNLNWVHAVTASYY 132 (282)
Q Consensus 103 ~~~~~~~------~~~~~~~l~~~vD~v~vm~yd~~ 132 (282)
+...... .+-+.+.++.+||.|.-|.|--|
T Consensus 264 IYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 264 IYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred eecccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 7653332 45688999999999999998544
No 33
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=92.48 E-value=0.71 Score=41.13 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEe----ecCC-----CchhHhhHHHHHHHHHHHHhhHH
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAW----TAPN-----TSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~----e~~~-----~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
+++-|.-+++. ++-+.+.|||||.+|. ++-. .+...+.+..|+++|.+ ..++.
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~-~ar~~ 203 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAA-YARAQ 203 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHH-HHHHH
Confidence 44566655555 6677788999999995 2111 02334678899999977 77654
No 34
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.84 E-value=0.52 Score=43.44 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEe--ecCC--C--------------------ch---h--HhhHHHHHHHHHHHH
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAW--TAPN--T--------------------ST---D--LFNIGLLFDEWRIAA 82 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~--e~~~--~--------------------~~---~--~~~~~~fl~~lr~~~ 82 (282)
.|+.|+-..+-+++++++|..|||.||- -+|. + +. + +++..+|++.+.. .
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~-~ 258 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQ-T 258 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHH-H
Confidence 3467777777788999999999999993 2222 1 11 1 2578899999999 9
Q ss_pred hhHHHhhccCCCccEEEEEEe-ccCCC-CCccChh-----h--hhccccEEEeeec
Q 042934 83 TKLEAKNSSRQQSQLILTARF-HYSPP-ANSYLLN-----S--RQRNLNWVHAVTA 129 (282)
Q Consensus 83 l~~~~~~~g~~~~~~~ls~a~-~~~~~-~~~~~~~-----~--l~~~vD~v~vm~y 129 (282)
+++. +++..++++. ++... ...|+.. . -..++|++..|.|
T Consensus 259 VKav-------Kp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvY 307 (418)
T COG1649 259 VKAV-------KPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVY 307 (418)
T ss_pred HHhh-------CCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhh
Confidence 9987 8899999996 42111 1112211 1 1467899999998
No 35
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=89.14 E-value=2.9 Score=36.64 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc------hhHhhHHHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS------TDLFNIGLLFDEWRI 80 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~------~~~~~~~~fl~~lr~ 80 (282)
++..++++|+|... +.++ .+++.+.++|+|+|+|++--|... .+.....++++++|+
T Consensus 97 ~~~pvi~si~g~~~----------------~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~ 159 (289)
T cd02810 97 PGQPLIASVGGSSK----------------EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKA 159 (289)
T ss_pred CCCeEEEEeccCCH----------------HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 57889999988531 2333 345566677999999999877542 133455667777777
Q ss_pred HHhhHHHhhccCCCccEEEEEEeccCCCC-CccC-hhhhh-ccccEEEeee
Q 042934 81 AATKLEAKNSSRQQSQLILTARFHYSPPA-NSYL-LNSRQ-RNLNWVHAVT 128 (282)
Q Consensus 81 ~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~-~~~l~-~~vD~v~vm~ 128 (282)
.++ +-|++-+.+.... .... ...+. ..+|++.+..
T Consensus 160 -~~~------------~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 160 -AVD------------IPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred -ccC------------CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 542 4555555543221 0111 12222 3489998754
No 36
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=88.17 E-value=0.88 Score=31.78 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=34.2
Q ss_pred cCCCCCCCccchhhhCC-hHHHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 16 GQGMDTNYSIYSSMVSN-SSHRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 16 Gg~~~~~~~~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
|-|.. ....+.....+ +..|+.+++.|++.+..-.||||-+|-
T Consensus 32 ~~W~~-~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPG-YPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCC-CCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 44544 45566666666 999999999999999988899999984
No 37
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=88.11 E-value=1.1 Score=42.99 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=39.0
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecC-------CCc--hhHhhHHHHHHHHHHHHhh
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAP-------NTS--TDLFNIGLLFDEWRIAATK 84 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~-------~~~--~~~~~~~~fl~~lr~~~l~ 84 (282)
-.++.-|.-.++++.+.++..||||+.||= -.+ +.+ .-...|..||+++++ ++.
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~-~~~ 300 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKE-ALP 300 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHH-HST
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHH-hCC
Confidence 567789999999999999999999999993 211 111 225789999999999 884
No 38
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.03 E-value=5 Score=33.69 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=39.2
Q ss_pred cccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhH
Q 042934 3 KKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNI 71 (282)
Q Consensus 3 k~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~ 71 (282)
.....+.+++++|+|... +.|++. ++.+++.|||||+|+.-.|.. ..+..-.
T Consensus 49 ~~~~~~~p~~~qi~g~~~----------------~~~~~a-a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~ 111 (231)
T cd02801 49 TRNPEERPLIVQLGGSDP----------------ETLAEA-AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELV 111 (231)
T ss_pred ccCccCCCEEEEEcCCCH----------------HHHHHH-HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHH
Confidence 345667888899987532 344433 344556799999999766542 0233445
Q ss_pred HHHHHHHHHHHh
Q 042934 72 GLLFDEWRIAAT 83 (282)
Q Consensus 72 ~~fl~~lr~~~l 83 (282)
.++++++|+ .+
T Consensus 112 ~eii~~v~~-~~ 122 (231)
T cd02801 112 AEIVRAVRE-AV 122 (231)
T ss_pred HHHHHHHHH-hc
Confidence 566667766 54
No 39
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=84.31 E-value=3.5 Score=42.03 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.++..|+-+++++.-|+++|++||+-||.-.-.. ..|+++++. ++++.
T Consensus 469 e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~-------~~f~~~~~~-~l~~i 516 (898)
T TIGR02103 469 EHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHP-------KAQMLAARE-AIKAL 516 (898)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCC-------HHHHHHHHH-HHHHh
Confidence 4577888999999999999999999999753332 456666666 66554
No 40
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.14 E-value=6.8 Score=34.45 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=37.9
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc-------hhHhhHHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS-------TDLFNIGLLFDEWR 79 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~-------~~~~~~~~fl~~lr 79 (282)
.+.+++++|+|.. .+.|++ +++.+++.|+|+|+|++--|... .+.....++++++|
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 4678889998742 234544 44556777999999998766531 22344556666666
Q ss_pred HHHh
Q 042934 80 IAAT 83 (282)
Q Consensus 80 ~~~l 83 (282)
+ ..
T Consensus 151 ~-~~ 153 (296)
T cd04740 151 K-AT 153 (296)
T ss_pred h-cc
Confidence 6 44
No 41
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=83.29 E-value=6.9 Score=34.28 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHHHHc-CCCeEEE-------EeecCCCc------hhHhhHHHHHHHHHHHHhhHHHhhccCCCccE
Q 042934 32 NSSHRKSFIDCSIRIARLY-GFQGLDF-------AWTAPNTS------TDLFNIGLLFDEWRIAATKLEAKNSSRQQSQL 97 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~-~~DGidi-------d~e~~~~~------~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~ 97 (282)
+++. ++.|.+|-+=|..| .||||=| |+|.+... .....+..|..+|+. .++.. .+.+
T Consensus 117 ~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~-~v~~~-------rp~l 187 (294)
T PF14883_consen 117 DPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAA-AVRRY-------RPDL 187 (294)
T ss_pred CHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHH-HHHHh-------Cccc
Confidence 3344 45678888888887 7999987 34422110 122467889999998 87654 2222
Q ss_pred EEEEEeccCCCC-------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHHHCCC
Q 042934 98 ILTARFHYSPPA-------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGL 170 (282)
Q Consensus 98 ~ls~a~~~~~~~-------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~~~g~ 170 (282)
...--+.+.+-. -.-++..+.+..|++.+|+.-+...- . .| ..++...++...+...
T Consensus 188 kTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~~----~---~~---------~~WL~~Lv~~v~~~p~ 251 (294)
T PF14883_consen 188 KTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQA----E---DP---------EQWLAQLVDAVAARPG 251 (294)
T ss_pred hhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhccc----c---CH---------HHHHHHHHHHHHhcCC
Confidence 222223222221 22356677778899999987654320 1 11 4477788888878877
Q ss_pred CCCceeeecccceeeee
Q 042934 171 PADKLVMCLPFYGYAWR 187 (282)
Q Consensus 171 p~~Kivlglp~yG~~~~ 187 (282)
+.+|+|+-|-+ ++|+
T Consensus 252 ~l~KtvFELQa--~dwr 266 (294)
T PF14883_consen 252 GLDKTVFELQA--VDWR 266 (294)
T ss_pred cccceEEEEec--cCCc
Confidence 78999998876 4554
No 42
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=82.46 E-value=4.9 Score=39.32 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.++..|+-+++++.-+++++++||+-||.-.... ..|+++++. +++..
T Consensus 292 ~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~-------~~~~~~~~~-~~~~~ 339 (605)
T TIGR02104 292 EREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHD-------IETMNEIRK-ALNKI 339 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCC-------HHHHHHHHH-HHHhh
Confidence 3678889999999999999999999999642222 347788888 77654
No 43
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=81.82 E-value=11 Score=34.59 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=31.4
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT 64 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~ 64 (282)
+|++.|.+.+++||.|... . +.+. .+++.+++.|.|+|+|++--|..
T Consensus 107 ~k~~~~~~pvIaSi~~~~s--~-------------~~~~-~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 107 LKEEYPDRILIASIMEEYN--K-------------DAWE-EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHhhCCCCcEEEEccCCCC--H-------------HHHH-HHHHHHHhcCCCEEEEECCCCCC
Confidence 4566788999999955221 1 2222 23344567789999999987764
No 44
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=81.59 E-value=9.9 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeec
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAWTA 61 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~e~ 61 (282)
.++.|++.. +.+++.|||||+|..-.
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchhh
Confidence 445666554 44677899999998654
No 45
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=81.41 E-value=8.7 Score=33.91 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcC-CCeEEEEeecCCCc-------hhHhhHHHHHHHHH
Q 042934 8 SITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYG-FQGLDFAWTAPNTS-------TDLFNIGLLFDEWR 79 (282)
Q Consensus 8 ~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidid~e~~~~~-------~~~~~~~~fl~~lr 79 (282)
+..+++||+|.. .+.|++ +++.++++| +|||+|+.--|..+ .+.+...++++++|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 577889998742 145554 344567888 99999998655431 22345556666666
Q ss_pred HHHh
Q 042934 80 IAAT 83 (282)
Q Consensus 80 ~~~l 83 (282)
+ +.
T Consensus 154 ~-~~ 156 (301)
T PRK07259 154 E-VV 156 (301)
T ss_pred H-hc
Confidence 6 54
No 46
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=81.14 E-value=8 Score=34.59 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=38.2
Q ss_pred CCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHH
Q 042934 6 NPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLL 74 (282)
Q Consensus 6 ~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~f 74 (282)
.....+++.|+|... +.|+ ..+..+.++|||+|||+.--|.. -.+.+...++
T Consensus 52 ~~e~p~~vQl~g~~p----------------~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~i 114 (318)
T TIGR00742 52 PEESPVALQLGGSDP----------------NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADC 114 (318)
T ss_pred CCCCcEEEEEccCCH----------------HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHH
Confidence 334556777776532 2333 34556677899999999976653 1334556677
Q ss_pred HHHHHHHHh
Q 042934 75 FDEWRIAAT 83 (282)
Q Consensus 75 l~~lr~~~l 83 (282)
++++++ ++
T Consensus 115 v~av~~-~~ 122 (318)
T TIGR00742 115 VKAMQE-AV 122 (318)
T ss_pred HHHHHH-Hh
Confidence 777777 65
No 47
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=80.14 E-value=11 Score=35.01 Aligned_cols=63 Identities=10% Similarity=0.139 Sum_probs=41.0
Q ss_pred ccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc----------hhHhhHHH
Q 042934 4 KENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS----------TDLFNIGL 73 (282)
Q Consensus 4 ~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~----------~~~~~~~~ 73 (282)
+..+...+++||.|... + +.++ ..+..+++.++|+|+|++-.|... .+.+.+.+
T Consensus 95 ~~~~~~p~i~si~g~~~------------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~ 158 (420)
T PRK08318 95 RDYPDRALIASIMVECN------------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEM 158 (420)
T ss_pred hhCCCceEEEEeccCCC------------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHH
Confidence 34455678888876411 1 2233 455556777899999999888621 35567777
Q ss_pred HHHHHHHHHh
Q 042934 74 LFDEWRIAAT 83 (282)
Q Consensus 74 fl~~lr~~~l 83 (282)
+++.+++ ..
T Consensus 159 i~~~v~~-~~ 167 (420)
T PRK08318 159 YTRWVKR-GS 167 (420)
T ss_pred HHHHHHh-cc
Confidence 7777777 54
No 48
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=78.93 E-value=7.7 Score=34.91 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLF 75 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl 75 (282)
...++++.|+|... +.|++ .+..+++.|||||||+.--|.. -.+..-....+
T Consensus 63 ~e~p~~vQl~g~~p----------------~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv 125 (333)
T PRK11815 63 EEHPVALQLGGSDP----------------ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCV 125 (333)
T ss_pred CCCcEEEEEeCCCH----------------HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHH
Confidence 34467777776532 34443 4556678899999999876642 12334445666
Q ss_pred HHHHHHHh
Q 042934 76 DEWRIAAT 83 (282)
Q Consensus 76 ~~lr~~~l 83 (282)
+++|+ ++
T Consensus 126 ~avr~-~v 132 (333)
T PRK11815 126 KAMKD-AV 132 (333)
T ss_pred HHHHH-Hc
Confidence 66666 54
No 49
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=78.86 E-value=17 Score=32.14 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred ccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc----------hhHhhHHH
Q 042934 4 KENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS----------TDLFNIGL 73 (282)
Q Consensus 4 ~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~----------~~~~~~~~ 73 (282)
+..+...+++++.|... + +.|++ +++.+.+.++|+|+|++--|... .+.+.+.+
T Consensus 95 ~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~ 158 (299)
T cd02940 95 KDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEE 158 (299)
T ss_pred hhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHH
Confidence 33346778888866411 1 33443 44555667899999999877641 34556777
Q ss_pred HHHHHHHHHh
Q 042934 74 LFDEWRIAAT 83 (282)
Q Consensus 74 fl~~lr~~~l 83 (282)
+++.+|+ ..
T Consensus 159 iv~~v~~-~~ 167 (299)
T cd02940 159 ICRWVRE-AV 167 (299)
T ss_pred HHHHHHH-hc
Confidence 7777777 54
No 50
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=77.70 E-value=4.6 Score=36.81 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=54.1
Q ss_pred ccCCCCeEEEEE-------cCCCCCCCccchhhhC-ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCC-CchhHhhHHHH
Q 042934 4 KENPSITILLSI-------GQGMDTNYSIYSSMVS-NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPN-TSTDLFNIGLL 74 (282)
Q Consensus 4 ~~~~~~kvl~si-------Gg~~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~-~~~~~~~~~~f 74 (282)
.+.+||.|+-.| || +.+.+..||. +++-.--+++.++++.+.|||||--|+=|-.+ .+++..++.+|
T Consensus 136 aHrNGVPvlGt~Ffppk~ygg----~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f 211 (553)
T COG4724 136 AHRNGVPVLGTLFFPPKNYGG----DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQF 211 (553)
T ss_pred hhcCCCceeeeeecChhhcCc----hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHH
Confidence 456788998776 33 2455555554 55666679999999999999999999987543 24667788888
Q ss_pred HHHHHH
Q 042934 75 FDEWRI 80 (282)
Q Consensus 75 l~~lr~ 80 (282)
+.-+++
T Consensus 212 ~ly~ke 217 (553)
T COG4724 212 MLYSKE 217 (553)
T ss_pred HHHHHh
Confidence 888776
No 51
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.62 E-value=18 Score=32.23 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEecc
Q 042934 37 KSFIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHY 105 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~ 105 (282)
+.|++.+. .+.+.|+|||||+.--|.. -.+.....++++++|+ ++. .++-||+-+..
T Consensus 75 ~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~~~----------~~~pVsvKiR~ 142 (312)
T PRK10550 75 QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-AVP----------AHLPVTVKVRL 142 (312)
T ss_pred HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-hcC----------CCcceEEEEEC
Confidence 34555443 4466799999999987752 1334455666677776 552 22566666654
Q ss_pred CCCC--CccChh-hhh-ccccEEEeee
Q 042934 106 SPPA--NSYLLN-SRQ-RNLNWVHAVT 128 (282)
Q Consensus 106 ~~~~--~~~~~~-~l~-~~vD~v~vm~ 128 (282)
.... ....+. .+. ..+|.+.|..
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEECC
Confidence 3211 111222 222 3488887753
No 52
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=77.01 E-value=16 Score=36.18 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC------ch------------------------------hHhhHHHHH
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT------ST------------------------------DLFNIGLLF 75 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~------~~------------------------------~~~~~~~fl 75 (282)
+|+.|+...+-..++.+.+.||||-||=+...+ +. ....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 456665544445556666799999997442211 00 012345788
Q ss_pred HHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccC
Q 042934 76 DEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYG 148 (282)
Q Consensus 76 ~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~ 148 (282)
.+|+. .++.. . ++.+...--+.+.+-. -.-++..+.+..||+.+|+.-|... ...+.+
T Consensus 519 ~~l~~-~v~~~----~--~~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~---- 583 (671)
T PRK14582 519 LELSA-RVKAI----R--GPQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS---- 583 (671)
T ss_pred HHHHH-HHHhh----c--CccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH----
Confidence 88888 77653 0 1122222223333222 2236677788899999999644421 111111
Q ss_pred CCCCCCcccHHHHHHHHHHCCCCCCceeeecccceeeee
Q 042934 149 SSSGGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWR 187 (282)
Q Consensus 149 ~~~~~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~ 187 (282)
..+....++.+.+.-...+|+|+-|-+ ++|+
T Consensus 584 ------~~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 584 ------DAWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred ------HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 235555666555554577999998765 4554
No 53
>PRK12568 glycogen branching enzyme; Provisional
Probab=75.29 E-value=11 Score=37.52 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=41.0
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEe-ec--------------CCCchhHhh--HHHHHHHHHHHHhhHH
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAW-TA--------------PNTSTDLFN--IGLLFDEWRIAATKLE 86 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~--------------~~~~~~~~~--~~~fl~~lr~~~l~~~ 86 (282)
..+++.|+-+++++.-++++|++||+-+|- .. |.......| =..|++++++ .++..
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~-~v~~~ 452 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNR-EIASQ 452 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHH-HHHHH
Confidence 457789999999999999999999999993 11 110011122 2579999999 98865
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=75.23 E-value=3.5 Score=31.81 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred chhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 26 YSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 26 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
+..+=-|...++.++..+.+++++|++|||-|||
T Consensus 99 ~~~~c~ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 99 WYTCCLNSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ceecCCCccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 4445556678888999999999999999999986
No 55
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=75.20 E-value=15 Score=33.61 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeec
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAWTA 61 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~e~ 61 (282)
.++.|++... .+++-|||||+|..-.
T Consensus 148 ii~~f~~AA~-ra~~aGfDgVEih~ah 173 (370)
T cd02929 148 VRRWYVDAAL-RARDAGFDIVYVYAAH 173 (370)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEcccc
Confidence 4566766544 4566799999998754
No 56
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=75.05 E-value=28 Score=31.49 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
+..+.|++... .+++-|||||+|..
T Consensus 138 ~ii~~f~~AA~-ra~~aGfDgVeih~ 162 (343)
T cd04734 138 EIIAAFADAAR-RCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEcc
Confidence 44566666554 44567999999998
No 57
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=74.97 E-value=15 Score=32.83 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCC
Q 042934 6 NPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPN 63 (282)
Q Consensus 6 ~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~ 63 (282)
..+..+++.|+|... +.|++ .+..+++.|+|||||+.--|.
T Consensus 60 ~~~~p~i~ql~g~~~----------------~~~~~-aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 60 EDETPISVQLFGSDP----------------DTMAE-AAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CccceEEEEEeCCCH----------------HHHHH-HHHHHHhCCCCEEEEECCCCH
Confidence 345667788887632 23333 444667789999999987663
No 58
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=74.36 E-value=5.7 Score=31.75 Aligned_cols=24 Identities=33% Similarity=0.803 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHCCCCCCce-eeecc
Q 042934 157 STDQVLKAWIERGLPADKL-VMCLP 180 (282)
Q Consensus 157 ~i~~~v~~~~~~g~p~~Ki-vlglp 180 (282)
..+.+.+.+++.|+|++|| +.|+|
T Consensus 144 ase~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 144 ASEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred CCHHHHHHHHHcCCChhHEEEeCcc
Confidence 4566778888999999999 55666
No 59
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.05 E-value=43 Score=30.57 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeec---------CCC-------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEE
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAWTA---------PNT-------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLI 98 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~e~---------~~~-------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ 98 (282)
..+.|++.. ..+++-|||||+|.--+ |.. ....+|=.+|+.++-+ ++++.- ++.+.
T Consensus 142 ii~~f~~AA-~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~-air~~v------G~d~~ 213 (361)
T cd04747 142 VIAAFARAA-ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVK-AIRAAV------GPDFP 213 (361)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHc------CCCCe
Confidence 345566544 44566799999999755 321 1123455566666555 554431 34577
Q ss_pred EEEEecc
Q 042934 99 LTARFHY 105 (282)
Q Consensus 99 ls~a~~~ 105 (282)
|.+.+.+
T Consensus 214 v~vRis~ 220 (361)
T cd04747 214 IILRFSQ 220 (361)
T ss_pred EEEEECc
Confidence 7777764
No 60
>PRK12313 glycogen branching enzyme; Provisional
Probab=73.36 E-value=12 Score=36.83 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEee-cCC----------------CchhHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWT-APN----------------TSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e-~~~----------------~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.+++.|+-+++++.-++++|++||+-||-- ... ...+. .=..|++++++ .++..
T Consensus 282 ~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~-~v~~~ 352 (633)
T PRK12313 282 GKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNE-VVYLE 352 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHH-HHHHH
Confidence 478899999999999999999999999932 110 00111 23689999999 88765
No 61
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.29 E-value=40 Score=30.55 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEee
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFAWT 60 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid~e 60 (282)
...+.|++.... +++-|||||+|..-
T Consensus 141 ~ii~~f~~aA~~-a~~aGfDgVeih~a 166 (353)
T cd04735 141 DIIDAFGEATRR-AIEAGFDGVEIHGA 166 (353)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEccc
Confidence 344566665544 56689999999863
No 62
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=72.75 E-value=9.7 Score=36.76 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
..|+-+++++.-++++|++||+-||--...... .-..|+++++. .+++.
T Consensus 220 ~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~---~~~~~l~~~~~-~~~~~ 268 (542)
T TIGR02402 220 EVRRYILDNALYWLREYHFDGLRLDAVHAIADT---SAKHILEELAR-EVHEL 268 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccc---cHHHHHHHHHH-HHHHH
Confidence 888999999999999999999999953211101 12578999998 88765
No 63
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=72.31 E-value=24 Score=31.08 Aligned_cols=89 Identities=7% Similarity=0.014 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHc--CCCeEEEEeecCCCc-------hhHhhHHHHHHHH
Q 042934 8 SITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLY--GFQGLDFAWTAPNTS-------TDLFNIGLLFDEW 78 (282)
Q Consensus 8 ~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidid~e~~~~~-------~~~~~~~~fl~~l 78 (282)
+.+++++|.|... +.+ ..+++.+.+. ++|+|||++--|... .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~~----------------~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSSV----------------EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCCH----------------HHH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 4678888876421 223 3344445543 389999998877531 3445667777777
Q ss_pred HHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChh-hh-hccccEEEee
Q 042934 79 RIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLN-SR-QRNLNWVHAV 127 (282)
Q Consensus 79 r~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~-~l-~~~vD~v~vm 127 (282)
|+ +.+ +.|++-+.+... ....+. .+ ..-+|.+++.
T Consensus 153 r~-~~~------------~pv~vKi~~~~~-~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 153 KD-KTD------------VPVFAKLSPNVT-DITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HH-hcC------------CCEEEECCCChh-hHHHHHHHHHHcCCCEEEEE
Confidence 77 542 566666653221 111112 22 2458999875
No 64
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=71.94 E-value=17 Score=35.68 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecCC-----------Cch-----hHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAPN-----------TST-----DLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~~-----------~~~-----~~~~~~~fl~~lr~~~l~~~ 86 (282)
.+++.|+-+++++.-++++|++||+-||- .... .+. ....=..|++++++ .++..
T Consensus 268 ~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~-~v~~~ 339 (613)
T TIGR01515 268 GRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQ-TVYEA 339 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHH-HHHHH
Confidence 56889999999999999999999999996 2110 000 00112579999999 88765
No 65
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=70.62 E-value=26 Score=31.45 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=37.1
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchh------HhhHHHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTD------LFNIGLLFDEWRI 80 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~------~~~~~~fl~~lr~ 80 (282)
.++.++++|+|... +.+ ..++..+++.|+|+|+|++-.|....+ ...+.++++++++
T Consensus 100 ~~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~ 162 (334)
T PRK07565 100 VDIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKS 162 (334)
T ss_pred cCCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHh
Confidence 36889999987531 123 345555677799999999865432111 1346677777777
Q ss_pred HHh
Q 042934 81 AAT 83 (282)
Q Consensus 81 ~~l 83 (282)
..
T Consensus 163 -~~ 164 (334)
T PRK07565 163 -AV 164 (334)
T ss_pred -cc
Confidence 54
No 66
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=69.77 E-value=29 Score=31.13 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
..+.|++..... ++-|||||+|..
T Consensus 152 ii~~~~~aA~~a-~~aGfDgVei~~ 175 (336)
T cd02932 152 VVDAFVAAARRA-VEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEcc
Confidence 445666655444 557999999986
No 67
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=69.68 E-value=32 Score=31.82 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=43.7
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC----ch---hHh----hHHHHHHHHHHHHhhHHHhhccCCCccEE
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT----ST---DLF----NIGLLFDEWRIAATKLEAKNSSRQQSQLI 98 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~----~~---~~~----~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ 98 (282)
+++|+.|+-+.+.+.++++++|+|.|-+|+..... +. ... .+.+++++||+ ++ +++.
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~-~~-----------P~v~ 229 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRA-RF-----------PDVL 229 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHH-HT-----------TTSE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-hC-----------CCcE
Confidence 46889999999999999999999999999964322 11 122 34457777777 65 4588
Q ss_pred EEEEecc
Q 042934 99 LTARFHY 105 (282)
Q Consensus 99 ls~a~~~ 105 (282)
+..|...
T Consensus 230 iE~CssG 236 (394)
T PF02065_consen 230 IENCSSG 236 (394)
T ss_dssp EEE-BTT
T ss_pred EEeccCC
Confidence 8888654
No 68
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=69.56 E-value=15 Score=32.72 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCC
Q 042934 39 FIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSP 107 (282)
Q Consensus 39 f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~ 107 (282)
.....++++..+++|||||+.-=|.. -.+.+....+++++++ .+. .++.+-+.+....
T Consensus 67 ~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~-~~~----------~pvsvKiR~g~~~ 135 (309)
T PF01207_consen 67 DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRK-AVP----------IPVSVKIRLGWDD 135 (309)
T ss_dssp HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHH-H-S----------SEEEEEEESECT-
T ss_pred HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhc-ccc----------cceEEeccccccc
Confidence 33444556777899999999987753 2455678888888888 763 2344444443331
Q ss_pred CC-CccC-hhhhh-ccccEEEeee
Q 042934 108 PA-NSYL-LNSRQ-RNLNWVHAVT 128 (282)
Q Consensus 108 ~~-~~~~-~~~l~-~~vD~v~vm~ 128 (282)
.. ...+ ...+. ..++.+.|.+
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEEC
T ss_pred chhHHHHHHHHhhhcccceEEEec
Confidence 12 1112 22232 4488888865
No 69
>PRK14706 glycogen branching enzyme; Provisional
Probab=69.23 E-value=18 Score=35.75 Aligned_cols=55 Identities=7% Similarity=0.043 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecCC----Cc----------hhHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAPN----TS----------TDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~~----~~----------~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.+++.|+-+++++.-+++++++||+-+|- .... +. .....=..||++|++ .++..
T Consensus 279 ~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~-~v~~~ 348 (639)
T PRK14706 279 GRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNE-VTHHM 348 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHH-HHHHh
Confidence 57899999999999999999999999994 2210 00 011123579999999 88765
No 70
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=68.36 E-value=32 Score=34.75 Aligned_cols=85 Identities=16% Similarity=0.077 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEee---------cCCC-------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEE
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAWT---------APNT-------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLI 98 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~e---------~~~~-------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ 98 (282)
.++.|++.... +++-|||||+|..- .|.. ....+|=.+|+.++-+ ++++.- +..+.
T Consensus 549 ~i~~f~~aA~~-a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~-~ir~~~------~~~~~ 620 (765)
T PRK08255 549 VRDDFVAAARR-AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFR-AVRAVW------PAEKP 620 (765)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHH-HHHHhc------CCCCe
Confidence 44566665544 45679999999876 2321 0122344455555544 443320 24577
Q ss_pred EEEEeccCCCC-CccCh-------hhhhc-cccEEEee
Q 042934 99 LTARFHYSPPA-NSYLL-------NSRQR-NLNWVHAV 127 (282)
Q Consensus 99 ls~a~~~~~~~-~~~~~-------~~l~~-~vD~v~vm 127 (282)
|++.+.+..+. ..... +.|.+ .+|+|+|.
T Consensus 621 v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 621 MSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred eEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 88877764333 22222 23333 38999885
No 71
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=68.09 E-value=49 Score=29.86 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEee
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFAWT 60 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid~e 60 (282)
+..+.|++.. ..+++-|||||+|.--
T Consensus 139 ~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 139 ETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 3445666644 4456679999999875
No 72
>PRK05402 glycogen branching enzyme; Provisional
Probab=67.13 E-value=22 Score=35.75 Aligned_cols=56 Identities=9% Similarity=0.059 Sum_probs=40.6
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecCC----------------CchhHhhHHHHHHHHHHHHhhHH
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAPN----------------TSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~~----------------~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
..+++.|+-+++++.-+++++++||+-||- .... ...+...-..|++++++ .++..
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~-~~~~~ 448 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNA-VVHEE 448 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHH-HHHHH
Confidence 457889999999999999999999999994 2110 00011124689999999 88765
No 73
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.02 E-value=38 Score=30.07 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEee
Q 042934 36 RKSFIDCSIRIARLYGFQGLDFAWT 60 (282)
Q Consensus 36 r~~f~~~i~~~l~~~~~DGidid~e 60 (282)
++.|++.... +.+-|||||+|..-
T Consensus 140 i~~~~~aA~~-a~~aGfDgveih~~ 163 (327)
T cd02803 140 IEDFAAAARR-AKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEcch
Confidence 3445544433 45579999999874
No 74
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=65.77 E-value=38 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
..+.|++.... +++-|||||+|.-
T Consensus 135 i~~~f~~aA~~-a~~aGfDgVeih~ 158 (353)
T cd02930 135 TIEDFARCAAL-AREAGYDGVEIMG 158 (353)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEec
Confidence 44556655544 4557999999976
No 75
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=65.77 E-value=44 Score=29.42 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=38.6
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHc--CCCeEEEEeecCCC------chhHhhHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLY--GFQGLDFAWTAPNT------STDLFNIGLLFDEW 78 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidid~e~~~~------~~~~~~~~~fl~~l 78 (282)
++..+++||+|. . +.+++.+..+.... +.|+|+|++--|.. ..+.+.+.++++.+
T Consensus 90 ~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 90 SAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred cCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 567788888764 2 34444444443333 68999999987763 13456777888888
Q ss_pred HHHHh
Q 042934 79 RIAAT 83 (282)
Q Consensus 79 r~~~l 83 (282)
|+ ..
T Consensus 153 ~~-~~ 156 (294)
T cd04741 153 KA-AY 156 (294)
T ss_pred HH-hc
Confidence 88 65
No 76
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=65.76 E-value=31 Score=30.68 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=39.4
Q ss_pred ccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcC-CCeEEEEeecCCCc------hhHhhHHHHHH
Q 042934 4 KENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYG-FQGLDFAWTAPNTS------TDLFNIGLLFD 76 (282)
Q Consensus 4 ~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidid~e~~~~~------~~~~~~~~fl~ 76 (282)
+..++..+++||-|... +.+. .+++.++..+ .|.|+|+.--|..+ .+.+.+..+++
T Consensus 88 ~~~~~~pvI~Si~G~~~----------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~ 150 (310)
T PRK02506 88 KKGPNKPHFLSVVGLSP----------------EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILE 150 (310)
T ss_pred hhcCCCCEEEEEEeCcH----------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHH
Confidence 33456788889866431 2232 3334456677 79999999877431 24456777778
Q ss_pred HHHHHHh
Q 042934 77 EWRIAAT 83 (282)
Q Consensus 77 ~lr~~~l 83 (282)
.+|+ ..
T Consensus 151 ~v~~-~~ 156 (310)
T PRK02506 151 EVFT-YF 156 (310)
T ss_pred HHHH-hc
Confidence 8877 65
No 77
>PLN02803 beta-amylase
Probab=65.46 E-value=30 Score=32.98 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCeEEEE--e---e--cCCCchhHhhHHHHHHHHHH
Q 042934 40 IDCSIRIARLYGFQGLDFA--W---T--APNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid--~---e--~~~~~~~~~~~~~fl~~lr~ 80 (282)
+..-.+-|+..|+|||.+| | | .|.. -++..|.++++-+|+
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~-YdWsgY~~l~~mvr~ 155 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKDGPMK-YNWEGYAELVQMVQK 155 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccCCCCc-CCcHHHHHHHHHHHH
Confidence 3444455688999999999 3 3 2332 678999999999988
No 78
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=63.80 E-value=39 Score=30.28 Aligned_cols=103 Identities=10% Similarity=0.049 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----chhHhhHHHHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----STDLFNIGLLFDEWRIA 81 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----~~~~~~~~~fl~~lr~~ 81 (282)
.+..+++||+|... +. + ++.-+.|++.+-.+ .. ..|+|+|++--|.. .++.+.+.++++++|+
T Consensus 127 ~~~plivsi~g~~~--~~----~---~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~- 194 (327)
T cd04738 127 RGGPLGVNIGKNKD--TP----L---EDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKE- 194 (327)
T ss_pred CCCeEEEEEeCCCC--Cc----c---cccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHH-
Confidence 46889999988642 10 1 12223344433332 22 38999999976653 2345677788888888
Q ss_pred HhhHHHhhccCCCccEEEEEEeccCCCCCc-cCh-hhh-hccccEEEeee
Q 042934 82 ATKLEAKNSSRQQSQLILTARFHYSPPANS-YLL-NSR-QRNLNWVHAVT 128 (282)
Q Consensus 82 ~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~-~~~-~~l-~~~vD~v~vm~ 128 (282)
..... ++.+-|.+-+++...... ..+ +.+ ...+|.|.+..
T Consensus 195 ~~~~~-------~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 195 ERNKL-------GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred HHhhc-------ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 76421 112445555554322101 111 122 23578887654
No 79
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=63.73 E-value=3.9 Score=30.49 Aligned_cols=19 Identities=21% Similarity=0.637 Sum_probs=14.3
Q ss_pred HHHHHHHCCCCCCceeeec
Q 042934 161 VLKAWIERGLPADKLVMCL 179 (282)
Q Consensus 161 ~v~~~~~~g~p~~Kivlgl 179 (282)
..+.++++|||++.||||+
T Consensus 79 Ia~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 79 IAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHHTT--GGGEEETT
T ss_pred HHHHHHHcCCCHHHEEEcc
Confidence 3467889999999999996
No 80
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=63.37 E-value=27 Score=36.73 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEee
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWT 60 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e 60 (282)
++..|+-+++++.-++++|++||+-||.-
T Consensus 616 ~~~vrk~iiDsl~yWv~ey~VDGFRfDl~ 644 (1111)
T TIGR02102 616 HEMSRRILVDSIKYLVDEFKVDGFRFDMM 644 (1111)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 46778889999999999999999999964
No 81
>PLN00197 beta-amylase; Provisional
Probab=62.53 E-value=38 Score=32.48 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCeEEEE--e---e--cCCCchhHhhHHHHHHHHHH
Q 042934 40 IDCSIRIARLYGFQGLDFA--W---T--APNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid--~---e--~~~~~~~~~~~~~fl~~lr~ 80 (282)
+..-.+.|+..|+|||.+| | | .|. .-++..|.++++-+|+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~YdWsgY~~L~~mvr~ 175 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERESPG-VYNWGGYNELLEMAKR 175 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCCcHHHHHHHHHHHH
Confidence 3344455688999999999 3 2 233 3678899999999988
No 82
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=61.10 E-value=15 Score=31.67 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=28.8
Q ss_pred EEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHHH-CCCCCCceee
Q 042934 123 WVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIE-RGLPADKLVM 177 (282)
Q Consensus 123 ~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~~-~g~p~~Kivl 177 (282)
.+++|+|||.|.-. .+|-++-. . ....++++.+.+.+ .| ++++|+|
T Consensus 88 n~nv~~~DYSGyG~--S~G~psE~----n--~y~Di~avye~Lr~~~g-~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGR--SSGKPSER----N--LYADIKAVYEWLRNRYG-SPERIIL 134 (258)
T ss_pred cceEEEEecccccc--cCCCcccc----c--chhhHHHHHHHHHhhcC-CCceEEE
Confidence 56999999988521 12333322 1 14578888887774 44 7777776
No 83
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=60.46 E-value=56 Score=29.25 Aligned_cols=59 Identities=17% Similarity=0.050 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchh------HhhHHHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTD------LFNIGLLFDEWRI 80 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~------~~~~~~fl~~lr~ 80 (282)
.+..+++||.|... +.| ..+++.+++.|+|+|+|+.-.+....+ .+.+.++++.+|+
T Consensus 98 ~~~pvi~si~g~~~----------------~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~ 160 (325)
T cd04739 98 VSIPVIASLNGVSA----------------GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKS 160 (325)
T ss_pred cCCeEEEEeCCCCH----------------HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHh
Confidence 36778889866321 223 244455677789999999975432111 1345566777776
Q ss_pred HHh
Q 042934 81 AAT 83 (282)
Q Consensus 81 ~~l 83 (282)
..
T Consensus 161 -~~ 162 (325)
T cd04739 161 -AV 162 (325)
T ss_pred -cc
Confidence 54
No 84
>PLN02877 alpha-amylase/limit dextrinase
Probab=59.67 E-value=34 Score=35.42 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHH
Q 042934 33 SSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWR 79 (282)
Q Consensus 33 ~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr 79 (282)
+-.|+-+++++.-++++|++||+-||.-.-...+........|++|.
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~ 580 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLT 580 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHh
Confidence 56678889999999999999999999865443233333333444443
No 85
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=58.78 E-value=48 Score=27.50 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEE
Q 042934 46 IARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVH 125 (282)
Q Consensus 46 ~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~ 125 (282)
.+.+.|.|-|-|.+|.. .....+++.+|+ . | ....+++-|...... +..+...+|+|.
T Consensus 75 ~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~-~--------g-----~k~GialnP~T~~~~--~~~~l~~vD~Vl 132 (201)
T PF00834_consen 75 EFAEAGADYITFHAEAT------EDPKETIKYIKE-A--------G-----IKAGIALNPETPVEE--LEPYLDQVDMVL 132 (201)
T ss_dssp HHHHHT-SEEEEEGGGT------TTHHHHHHHHHH-T--------T-----SEEEEEE-TTS-GGG--GTTTGCCSSEEE
T ss_pred HHHhcCCCEEEEcccch------hCHHHHHHHHHH-h--------C-----CCEEEEEECCCCchH--HHHHhhhcCEEE
Confidence 34556889999998822 235567787777 3 3 666777765555433 345677899999
Q ss_pred eeecc
Q 042934 126 AVTAS 130 (282)
Q Consensus 126 vm~yd 130 (282)
+|+-+
T Consensus 133 vMsV~ 137 (201)
T PF00834_consen 133 VMSVE 137 (201)
T ss_dssp EESS-
T ss_pred EEEec
Confidence 99975
No 86
>PLN02960 alpha-amylase
Probab=58.39 E-value=40 Score=34.45 Aligned_cols=55 Identities=9% Similarity=-0.071 Sum_probs=39.5
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEee-------------------cCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAWT-------------------APNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~e-------------------~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
..+++.|+-+++++.-+|++|++||+-||=- ++....+ ..-..||++|.. .++..
T Consensus 528 y~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d-~~Ai~fL~~lN~-~v~~~ 601 (897)
T PLN02960 528 YGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVD-RDALIYLILANE-MLHQL 601 (897)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCC-chHHHHHHHHHH-HHHhh
Confidence 4568899999999999999999999999821 1111111 235678888888 77643
No 87
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=57.62 E-value=35 Score=25.83 Aligned_cols=46 Identities=7% Similarity=-0.077 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 39 FIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 39 f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
=++.+.++|++.|++.--+.+.+.+. .+.+.|+..+++.-+ .+++.
T Consensus 79 R~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~-~i~~l 124 (132)
T COG1908 79 RMELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVE-RIKEL 124 (132)
T ss_pred HHHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHH-HHHHh
Confidence 35677888999999888888888776 778889999998888 87765
No 88
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=56.22 E-value=24 Score=24.83 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=38.3
Q ss_pred HHHHcCCCeEEEEeec----CCC----------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCc
Q 042934 46 IARLYGFQGLDFAWTA----PNT----------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111 (282)
Q Consensus 46 ~l~~~~~DGidid~e~----~~~----------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~ 111 (282)
++.+++.|.--+-||- |.. ....+.+..+++++.+ .+++. .+...||+.+-.. ..
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~iR~~-------dP~~pvt~g~~~~---~~ 69 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFR-WIRAV-------DPSQPVTSGFWGG---DW 69 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHH-HHHTT--------TTS-EE--B--S----T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHH-HHHHh-------CCCCcEEeecccC---CH
Confidence 4567777777777763 220 1123668888888888 88765 4556677664222 11
Q ss_pred cChhhhh-ccccEEEeeec
Q 042934 112 YLLNSRQ-RNLNWVHAVTA 129 (282)
Q Consensus 112 ~~~~~l~-~~vD~v~vm~y 129 (282)
..+..+. ..+|++.+..|
T Consensus 70 ~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp THHHHS--TT-SSEEB-EE
T ss_pred HHHHHhchhcCCEEeeecC
Confidence 2245555 78899887765
No 89
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=54.62 E-value=26 Score=34.93 Aligned_cols=49 Identities=10% Similarity=0.035 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--chhHhhHHHHHHHHHH
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--STDLFNIGLLFDEWRI 80 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--~~~~~~~~~fl~~lr~ 80 (282)
++..|+-+++++.-+++++++||+-||.-.... .........|+++|++
T Consensus 315 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 315 HPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 678888888999999999999999999743221 0111224567888877
No 90
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=54.57 E-value=1e+02 Score=27.30 Aligned_cols=118 Identities=11% Similarity=0.120 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHHHHHcC-CCeEEEEeecCCCchhH-hhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC
Q 042934 32 NSSHRKSFIDCSIRIARLYG-FQGLDFAWTAPNTSTDL-FNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA 109 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~-~DGidid~e~~~~~~~~-~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~ 109 (282)
+.+..+.+.+.+++-|++.+ +|||-++.=..+..+.. +.=..|++.+|+ .+. +...|.+++=.+.+
T Consensus 76 ~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~Ll~rvR~-~vG----------p~vpI~~tlDlHaN- 143 (292)
T PF07364_consen 76 TREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGDLLRRVRA-IVG----------PDVPIAATLDLHAN- 143 (292)
T ss_dssp -HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHHHHHHHHH-HHT----------TTSEEEEEE-TT---
T ss_pred cHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHHHHHHHHH-HhC----------CCCeEEEEeCCCCC-
Confidence 44677889999999999986 99999998655431111 123469999999 883 44555555533322
Q ss_pred CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHH---HCCCCCCceeeecccce
Q 042934 110 NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWI---ERGLPADKLVMCLPFYG 183 (282)
Q Consensus 110 ~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~---~~g~p~~Kivlglp~yG 183 (282)
-.+.+.+.+|.+.. |- +.||.-.+ ..-..+.+.+. +.++.|.+...-+|+-.
T Consensus 144 ---vs~~mv~~ad~~~~--yr---------tyPH~D~~--------etg~~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 144 ---VSPRMVEAADIIVG--YR---------TYPHIDMY--------ETGERAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp -----HHHHHH-SEEEE--------------SS---HH--------HHHHHHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred ---ccHHHHHhCCEEEE--cC---------CCCccCHH--------HHHHHHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 24678888888643 32 23443321 12333444433 45567777777777654
No 91
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.79 E-value=1.1e+02 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeec
Q 042934 35 HRKSFIDCSIRIARLYGFQGLDFAWTA 61 (282)
Q Consensus 35 ~r~~f~~~i~~~l~~~~~DGidid~e~ 61 (282)
..+.|++.. ..+++-|||||+|..-+
T Consensus 150 ii~~f~~aA-~~a~~aGfDgVeih~ah 175 (338)
T cd02933 150 IVADFRQAA-RNAIEAGFDGVEIHGAN 175 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 345555544 44566799999998765
No 92
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=53.53 E-value=1.1e+02 Score=25.93 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCc
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~ 111 (282)
|.++...|+..+.+...- .++-.|.|....++..-...+++||. .|++. +.+..|.+. .|-..
T Consensus 87 d~~~~adYl~~l~~aA~P-----~~L~iEgP~d~g~r~~QI~~l~~Lr~-~L~~~-------g~~v~iVAD----EWCNT 149 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAP-----FKLRIEGPMDAGSREAQIEALAELRE-ELDRR-------GINVEIVAD----EWCNT 149 (248)
T ss_dssp -HHHHHHHHHHHHHHHTT-----S-EEEE-SB--SSHHHHHHHHHHHHH-HHHHC-------T--EEEEE-----TT--S
T ss_pred CHHHHHHHHHHHHHhcCC-----CeeeeeCCcCCCChHHHHHHHHHHHH-HHHhc-------CCCCeEEee----hhcCC
Confidence 556667777777765554 45678999877788888999999999 99865 334444433 44312
Q ss_pred -cChhhh--hccccEEEeeeccccC
Q 042934 112 -YLLNSR--QRNLNWVHAVTASYYE 133 (282)
Q Consensus 112 -~~~~~l--~~~vD~v~vm~yd~~~ 133 (282)
-|+..+ +..+|+|.|.+=|+.+
T Consensus 150 ~eDI~~F~da~A~dmVQIKtPDLGg 174 (248)
T PF07476_consen 150 LEDIREFADAKAADMVQIKTPDLGG 174 (248)
T ss_dssp HHHHHHHHHTT-SSEEEE-GGGGSS
T ss_pred HHHHHHHHhcCCcCEEEecCCCccc
Confidence 244444 4678999999999875
No 93
>PRK09505 malS alpha-amylase; Reviewed
Probab=53.53 E-value=34 Score=34.04 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
.+++.|+.+++.+..+++++|+||+-||-
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 46688899999999999999999999995
No 94
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=53.47 E-value=30 Score=34.04 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=31.7
Q ss_pred cccCCCCeEEEE---EcCCCCCCCccchhhhCChHHHHHH-HHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHH
Q 042934 3 KKENPSITILLS---IGQGMDTNYSIYSSMVSNSSHRKSF-IDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEW 78 (282)
Q Consensus 3 k~~~~~~kvl~s---iGg~~~~~~~~~~~~~~~~~~r~~f-~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~l 78 (282)
|++||++|+.+- .=||-. ...+.. -.++..-..+ ++-|...-+.| |++|||-.+- .++..=..+++.|
T Consensus 122 KkrNP~ikl~~L~W~~PgW~~--~g~~~~-~~~~~~~a~Y~~~wl~ga~~~~---gl~idYvg~~--NEr~~~~~~ik~l 193 (669)
T PF02057_consen 122 KKRNPNIKLYGLPWGFPGWVG--NGWNWP-YDNPQLTAYYVVSWLLGAKKTH---GLDIDYVGIW--NERGFDVNYIKWL 193 (669)
T ss_dssp HHH-TT-EEEEEES-B-GGGG--TTSS-T-TSSHHHHHHHHHHHHHHHHHHH--------EE-S---TTS---HHHHHHH
T ss_pred HhhCCCCeEEEeccCCCcccc--CCCCCc-ccchhhhhHHHHHHHHHHHHHh---CCCceEechh--hccCCChhHHHHH
Confidence 789999999854 233432 111011 1122111222 23333333555 5678876553 3333335788999
Q ss_pred HHHHhhHH
Q 042934 79 RIAATKLE 86 (282)
Q Consensus 79 r~~~l~~~ 86 (282)
|+ +|++.
T Consensus 194 r~-~l~~~ 200 (669)
T PF02057_consen 194 RK-ALNSN 200 (669)
T ss_dssp HH-HHHHT
T ss_pred HH-HHhhc
Confidence 99 99866
No 95
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=53.36 E-value=44 Score=30.68 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--------------chhHhhHHHHHHHHHHHHhhHH
Q 042934 33 SSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--------------STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 33 ~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--------------~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
++.+++|++=++.+++.+.=.||.|++-.|.. +-+.+....||++|+. +|++.
T Consensus 150 ~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~-~L~~~ 216 (384)
T PF14587_consen 150 PDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDK-ALKKR 216 (384)
T ss_dssp TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHH-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHH-HHHhc
Confidence 46788888888888888766899999754431 1234567899999999 99876
No 96
>PRK10785 maltodextrin glucosidase; Provisional
Probab=52.45 E-value=32 Score=33.66 Aligned_cols=55 Identities=11% Similarity=-0.051 Sum_probs=36.9
Q ss_pred CChHHHHHHHH---HH-HHHHHH-cCCCeEEEEeecCCC-chhHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFID---CS-IRIARL-YGFQGLDFAWTAPNT-STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~---~i-~~~l~~-~~~DGidid~e~~~~-~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.+++.|+.+++ ++ ..++++ +|+||+-||--.... ......-..|++++|+ ++++.
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~-~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQ-AAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHH-HHHhh
Confidence 46888888886 34 447776 899999999632111 0111224589999999 88765
No 97
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=52.45 E-value=1e+02 Score=27.71 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeec---------CCC-------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEE
Q 042934 36 RKSFIDCSIRIARLYGFQGLDFAWTA---------PNT-------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLIL 99 (282)
Q Consensus 36 r~~f~~~i~~~l~~~~~DGidid~e~---------~~~-------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~l 99 (282)
.+.|++.... +++-|||||+|.--+ |.. ..+.+|=.+|+.++-+ ++++.- ++.+.|
T Consensus 148 i~~f~~AA~~-A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~-aIr~~v------g~d~~v 219 (341)
T PF00724_consen 148 IEDFAQAARR-AKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIE-AIREAV------GPDFPV 219 (341)
T ss_dssp HHHHHHHHHH-HHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHH-HHHHHH------TGGGEE
T ss_pred HHHHHHHHHH-HHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHH-HHHHHh------cCCceE
Confidence 3455555444 445799999998753 111 1122344555554444 443221 345788
Q ss_pred EEEeccCCCC
Q 042934 100 TARFHYSPPA 109 (282)
Q Consensus 100 s~a~~~~~~~ 109 (282)
.+.+.+....
T Consensus 220 ~~Rls~~~~~ 229 (341)
T PF00724_consen 220 GVRLSPDDFV 229 (341)
T ss_dssp EEEEETTCSS
T ss_pred EEEEeeeccc
Confidence 8888776554
No 98
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=52.15 E-value=50 Score=30.35 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEe
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid~ 59 (282)
+.++.|++.. ..+++-|||||+|..
T Consensus 147 ~ii~~f~~AA-~ra~~AGfDgVEih~ 171 (382)
T cd02931 147 TFVGKFGESA-VIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEec
Confidence 4455666644 445557999999997
No 99
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=51.82 E-value=1.2e+02 Score=25.99 Aligned_cols=68 Identities=9% Similarity=0.164 Sum_probs=37.1
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcC-CCeEEEEeecCCCchhHhhHHHHHHHHHH
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYG-FQGLDFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidid~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
.|+..|++|+++. +... .....++.++.+-+-.+.++.. +|||-|-+-......+...+.++|+++..
T Consensus 112 ar~~~P~a~l~~N--dy~~---------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~ 180 (254)
T smart00633 112 AREADPDAKLFYN--DYNT---------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFAS 180 (254)
T ss_pred HHHhCCCCEEEEe--ccCC---------cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHH
Confidence 3677899999885 2211 1112455555555555555443 79998865322111233456666666655
No 100
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=51.74 E-value=51 Score=29.71 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=38.2
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEee----cCCCchhHhhHHHHHH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWT----APNTSTDLFNIGLLFD 76 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e----~~~~~~~~~~~~~fl~ 76 (282)
++|+..|++||++-+..... .+..+.|.+. |+.+| +|+|.- ||.-......+..-++
T Consensus 162 AVr~~~p~~kV~lH~~~~~~------------~~~~~~~f~~----l~~~g---~d~DviGlSyYP~w~~~l~~l~~~l~ 222 (332)
T PF07745_consen 162 AVREVDPNIKVMLHLANGGD------------NDLYRWFFDN----LKAAG---VDFDVIGLSYYPFWHGTLEDLKNNLN 222 (332)
T ss_dssp HHHTHSSTSEEEEEES-TTS------------HHHHHHHHHH----HHHTT---GG-SEEEEEE-STTST-HHHHHHHHH
T ss_pred HHHhcCCCCcEEEEECCCCc------------hHHHHHHHHH----HHhcC---CCcceEEEecCCCCcchHHHHHHHHH
Confidence 46889999999999976542 1233444444 44444 444432 4554455677778888
Q ss_pred HHHHHHhh
Q 042934 77 EWRIAATK 84 (282)
Q Consensus 77 ~lr~~~l~ 84 (282)
.|++ ++.
T Consensus 223 ~l~~-ry~ 229 (332)
T PF07745_consen 223 DLAS-RYG 229 (332)
T ss_dssp HHHH-HHT
T ss_pred HHHH-HhC
Confidence 8888 773
No 101
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=49.61 E-value=1.5e+02 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.061 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHHHHHHHHHh
Q 042934 43 SIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 43 i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl~~lr~~~l 83 (282)
.++.+.+.|+|+|||+.-=|.. -.+.+...+.++++|+ ++
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~-a~ 132 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVN-AV 132 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHH-hc
Confidence 3455667899999999987742 1234455666666666 55
No 102
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=49.12 E-value=34 Score=29.49 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=32.0
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
..+++.|+.+++ ++++..++++||+-||--.-.. ..|+++++. +++..
T Consensus 141 ~~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~-~~~~~ 188 (316)
T PF00128_consen 141 YENPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRD-EVKEE 188 (316)
T ss_dssp TTSHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHH-HHHHH
T ss_pred hhhhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhh-hhhhh
Confidence 346777887777 6666666679999999643222 266777776 66543
No 103
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=48.89 E-value=72 Score=28.77 Aligned_cols=79 Identities=10% Similarity=0.110 Sum_probs=42.3
Q ss_pred cccCCCCeEEEEEc---CCCCCC----CccchhhhCCh---HHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--------
Q 042934 3 KKENPSITILLSIG---QGMDTN----YSIYSSMVSNS---SHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-------- 64 (282)
Q Consensus 3 k~~~~~~kvl~siG---g~~~~~----~~~~~~~~~~~---~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-------- 64 (282)
|.+..|+||||.+- -|++.+ ...|..+ +-+ +....+..+++.-|+.. |+..||=+.+.
T Consensus 66 rak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~-~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQVGNEin~Gmlw 141 (332)
T PF07745_consen 66 RAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANL-SFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQVGNEINNGMLW 141 (332)
T ss_dssp HHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSS-SHHHHHHHHHHHHHHHHHHHHHT---T--ESEEEESSSGGGESTB
T ss_pred HHHHCCCeEEEeecccCCCCCCCCCCCCccCCCC-CHHHHHHHHHHHHHHHHHHHHHC---CCCccEEEeCccccccccC
Confidence 66788999999982 233211 1223222 111 34455666677777765 56777754431
Q ss_pred ----chhHhhHHHHHHHHHHHHhhHH
Q 042934 65 ----STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 65 ----~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
..+..++..||++-.+ ++++.
T Consensus 142 p~g~~~~~~~~a~ll~ag~~-AVr~~ 166 (332)
T PF07745_consen 142 PDGKPSNWDNLAKLLNAGIK-AVREV 166 (332)
T ss_dssp TTTCTT-HHHHHHHHHHHHH-HHHTH
T ss_pred cCCCccCHHHHHHHHHHHHH-HHHhc
Confidence 3556778888877777 67654
No 104
>PRK03705 glycogen debranching enzyme; Provisional
Probab=48.25 E-value=39 Score=33.48 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEee
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWT 60 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e 60 (282)
.++..|+-+++++.-++++|++||+-||.-
T Consensus 309 ~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 309 SHPAVVDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 467889999999999999999999999974
No 105
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=48.08 E-value=56 Score=26.24 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=36.3
Q ss_pred hhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHH
Q 042934 29 MVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEW 78 (282)
Q Consensus 29 ~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~l 78 (282)
.-.+++..++.+.+-+.+|.+.|.-|+.|.+|-| +..+....+.+..
T Consensus 143 ~~k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp---elrerl~~l~~~~ 189 (191)
T COG3410 143 PEKNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP---ELRERLVELKRGK 189 (191)
T ss_pred hhhCHHHHHHHHHHHHHHHHhcccceEEEEEeCH---HHHHHHHHHHhhh
Confidence 4457788899999999999999999999999955 4455555555443
No 106
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.87 E-value=48 Score=31.42 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhh
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATK 84 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~ 84 (282)
++|+.|+.+++.+.-+++++|+||+-||--.-.. ..|++++++ +++
T Consensus 206 ~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~-~~~ 251 (479)
T PRK09441 206 RHPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIE-HVR 251 (479)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHH-HHH
Confidence 3678888888766666667999999999632222 235555555 554
No 107
>PLN02161 beta-amylase
Probab=47.26 E-value=60 Score=30.94 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE--e---e--cCCCchhHhhHHHHHHHHHH
Q 042934 37 KSFIDCSIRIARLYGFQGLDFA--W---T--APNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid--~---e--~~~~~~~~~~~~~fl~~lr~ 80 (282)
++|..+ .+.|+..|+|||.+| | | .|. .-++..|.++++-+|+
T Consensus 117 ~al~~~-L~~LK~~GVdGVmvDVWWGiVE~~~p~-~YdWsgY~~l~~mvr~ 165 (531)
T PLN02161 117 KALTVS-LKALKLAGVHGIAVEVWWGIVERFSPL-EFKWSLYEELFRLISE 165 (531)
T ss_pred HHHHHH-HHHHHHcCCCEEEEEeeeeeeecCCCC-cCCcHHHHHHHHHHHH
Confidence 344444 455688999999999 3 3 233 3678899999999988
No 108
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=47.26 E-value=48 Score=29.97 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=56.1
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----chhHhhHHHHHHHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----STDLFNIGLLFDEWRIA 81 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----~~~~~~~~~fl~~lr~~ 81 (282)
.++.+++||+|... + .....-+.|+..+-.+ .. +.|+|++++--|.. .++...+.+.++++|+
T Consensus 136 ~~~pvivsI~~~~~--~-------~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~- 203 (344)
T PRK05286 136 RGIPLGINIGKNKD--T-------PLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKE- 203 (344)
T ss_pred CCCcEEEEEecCCC--C-------CcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH-
Confidence 56889999988532 0 0111223444444443 33 48999999977754 2345677788888888
Q ss_pred HhhHHHhhccCCCccEEEEEEeccCCCC-CccCh-hhh-hccccEEEeee
Q 042934 82 ATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLL-NSR-QRNLNWVHAVT 128 (282)
Q Consensus 82 ~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~-~~l-~~~vD~v~vm~ 128 (282)
..... .+ .+-|.+-+++.... .-..+ ..+ ...+|.|.+..
T Consensus 204 ~~~~~---~~----~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 204 AQAEL---HG----YVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHhcc---cc----CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 76421 00 14455555543221 11111 122 23588887765
No 109
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=46.38 E-value=78 Score=27.75 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEeecCC----------CchhHhhHHHHHHHHHHHHhhHH
Q 042934 39 FIDCSIRIARLYGFQGLDFAWTAPN----------TSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 39 f~~~i~~~l~~~~~DGidid~e~~~----------~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.+.+-.+=|.+.|||||=||+--+- .......+..|+.+|++ ...+.
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~-~~ra~ 183 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAE-YARAA 183 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHH-HHHhc
Confidence 3445555567779999999974221 13445678899999999 77654
No 110
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=45.94 E-value=1.4e+02 Score=25.61 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChh
Q 042934 36 RKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLN 115 (282)
Q Consensus 36 r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~ 115 (282)
.+..++..++.+++.|||.|+|.=-... -..+...++|+.++...|+..+ .-| .+...-...+++..+ ...--.
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--i~~~~~~rlI~~~~~~g~~v~~-EvG--~K~~~~~~~~~~~~~-i~~~~~ 142 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEISDGSME--ISLEERCNLIERAKDNGFMVLS-EVG--KKSPEKDSELTPDDR-IKLINK 142 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEEcCCccC--CCHHHHHHHHHHHHhCCCeEec-ccc--ccCCcccccCCHHHH-HHHHHH
Confidence 3467777888999999999999743221 2233456667766651232110 001 111000000100000 001112
Q ss_pred hhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHHHCCCCCCceeeeccc
Q 042934 116 SRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVMCLPF 181 (282)
Q Consensus 116 ~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~~~g~p~~Kivlglp~ 181 (282)
.|...+|+|.+-+-. .|-..-++.... ..-...+..++.. +|++||++--|.
T Consensus 143 ~LeAGA~~ViiEarE---------sg~~~Gi~~~~g----~~r~d~v~~i~~~-l~~eklifEAp~ 194 (237)
T TIGR03849 143 DLEAGADYVIIEGRE---------SGKNIGLFDEKG----NVKEDELDVLAEN-VDINKVIFEAPQ 194 (237)
T ss_pred HHHCCCcEEEEeehh---------cCCCcceeCCCC----CCchHHHHHHHhh-CChhcEEEECCC
Confidence 366888999886632 111112332222 1334456666664 999999998773
No 111
>PLN03244 alpha-amylase; Provisional
Probab=45.50 E-value=83 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEE
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFA 58 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid 58 (282)
.+++.|+-+++++.-+|++|++||+-||
T Consensus 504 g~~EVr~FLLsna~yWleEyhIDGFRfD 531 (872)
T PLN03244 504 GDLDVLHFLISNLNWWITEYQIDGFQFH 531 (872)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcCcceee
Confidence 3578889999999999999999999998
No 112
>PRK14705 glycogen branching enzyme; Provisional
Probab=45.38 E-value=64 Score=34.43 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEee-cCC------Cc--------hhHh--hHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWT-APN------TS--------TDLF--NIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e-~~~------~~--------~~~~--~~~~fl~~lr~~~l~~~ 86 (282)
.+++.|+-+++++.-++++|++||+-+|-- ... .+ ...+ .=..|++++.+ .++..
T Consensus 877 ~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~-~v~~~ 948 (1224)
T PRK14705 877 GRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNA-TVYKT 948 (1224)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHH-HHHHH
Confidence 567899999999999999999999999962 110 00 0011 13689999999 88754
No 113
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=45.22 E-value=25 Score=24.29 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=26.4
Q ss_pred ccchhhhCChHHHHHHHHHHHHHHHHcCCC
Q 042934 24 SIYSSMVSNSSHRKSFIDCSIRIARLYGFQ 53 (282)
Q Consensus 24 ~~~~~~~~~~~~r~~f~~~i~~~l~~~~~D 53 (282)
..|..++.+++.|++|.++=-.++++|++.
T Consensus 7 ~~~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 7 KLLEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 356778899999999999999999999875
No 114
>PRK01060 endonuclease IV; Provisional
Probab=45.18 E-value=43 Score=28.86 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKL 85 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~ 85 (282)
+...++.+++.|||||+|..+.|..-.....-...++++|+ .+++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~-~~~~ 58 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKA-ACEK 58 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHH-HHHH
Confidence 55678899999999999987655431111112334666777 6654
No 115
>PRK08005 epimerase; Validated
Probab=44.98 E-value=88 Score=26.18 Aligned_cols=64 Identities=8% Similarity=-0.086 Sum_probs=42.0
Q ss_pred HHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEE
Q 042934 45 RIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWV 124 (282)
Q Consensus 45 ~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v 124 (282)
+.+.+.|.|-|-|.+|-. ....++++.+|+ . | ...-+++-|.++... +..+...+|+|
T Consensus 75 ~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~-~--------G-----~k~GlAlnP~Tp~~~--i~~~l~~vD~V 132 (210)
T PRK08005 75 PWLAAIRPGWIFIHAESV------QNPSEILADIRA-I--------G-----AKAGLALNPATPLLP--YRYLALQLDAL 132 (210)
T ss_pred HHHHHhCCCEEEEcccCc------cCHHHHHHHHHH-c--------C-----CcEEEEECCCCCHHH--HHHHHHhcCEE
Confidence 334456889999999932 235567777777 3 3 556666655554322 34466789999
Q ss_pred Eeeecc
Q 042934 125 HAVTAS 130 (282)
Q Consensus 125 ~vm~yd 130 (282)
.||+-+
T Consensus 133 lvMsV~ 138 (210)
T PRK08005 133 MIMTSE 138 (210)
T ss_pred EEEEec
Confidence 999975
No 116
>PLN02705 beta-amylase
Probab=44.09 E-value=70 Score=31.20 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE--e---e--cCCCchhHhhHHHHHHHHHH
Q 042934 37 KSFIDCSIRIARLYGFQGLDFA--W---T--APNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid--~---e--~~~~~~~~~~~~~fl~~lr~ 80 (282)
+.+..+ .+-|+..|+|||.+| | | .|.. -++..|.++++-+|+
T Consensus 268 ~al~a~-L~aLK~aGVdGVmvDVWWGiVE~~~P~~-YdWsgY~~L~~mvr~ 316 (681)
T PLN02705 268 EGVRQE-LSHMKSLNVDGVVVDCWWGIVEGWNPQK-YVWSGYRELFNIIRE 316 (681)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeeeeeEeecCCCCc-CCcHHHHHHHHHHHH
Confidence 344444 445688999999999 3 3 2333 688999999999988
No 117
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=43.73 E-value=63 Score=20.80 Aligned_cols=39 Identities=10% Similarity=-0.043 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCCeE-EEEeecCCCchhHhhHHHHHHHHHH
Q 042934 41 DCSIRIARLYGFQGL-DFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 41 ~~i~~~l~~~~~DGi-did~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
..+++.|++.|+||. .|.||-+.- +...++..=++-||.
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~ 42 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRK 42 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHH
Confidence 357888999999995 677775543 444556655555665
No 118
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=43.49 E-value=1.1e+02 Score=26.05 Aligned_cols=65 Identities=9% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEE
Q 042934 46 IARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVH 125 (282)
Q Consensus 46 ~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~ 125 (282)
.+.+.|.|-|-|..|.. ....++++.+|+ . | .+...-+++-|.++.. .+..+...+|+|.
T Consensus 86 ~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~-~--------g---~~~kaGlalnP~Tp~~--~i~~~l~~vD~VL 145 (228)
T PRK08091 86 ACVAAGADIVTLQVEQT------HDLALTIEWLAK-Q--------K---TTVLIGLCLCPETPIS--LLEPYLDQIDLIQ 145 (228)
T ss_pred HHHHhCCCEEEEcccCc------ccHHHHHHHHHH-C--------C---CCceEEEEECCCCCHH--HHHHHHhhcCEEE
Confidence 34456899999999842 235677777777 3 2 2236677776655542 2345677899999
Q ss_pred eeecc
Q 042934 126 AVTAS 130 (282)
Q Consensus 126 vm~yd 130 (282)
||+-+
T Consensus 146 iMtV~ 150 (228)
T PRK08091 146 ILTLD 150 (228)
T ss_pred EEEEC
Confidence 99985
No 119
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=40.71 E-value=99 Score=28.06 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-
Q 042934 42 CSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA- 109 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~- 109 (282)
..++++..|. |||||++-=|.. -.+.+-..+++++++. .+. .-+|+-+.-..+.
T Consensus 90 ~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~-~l~------------~pVs~KIRI~~d~~ 155 (358)
T KOG2335|consen 90 KAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRA-NLN------------VPVSVKIRIFVDLE 155 (358)
T ss_pred HHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHh-hcC------------CCeEEEEEecCcHH
Confidence 3466788888 999999987753 2344555666667777 663 2255555444554
Q ss_pred CccChhhh--hccccEEEee
Q 042934 110 NSYLLNSR--QRNLNWVHAV 127 (282)
Q Consensus 110 ~~~~~~~l--~~~vD~v~vm 127 (282)
+.+++..+ ..-++++.|.
T Consensus 156 kTvd~ak~~e~aG~~~ltVH 175 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVH 175 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 44555544 3557888774
No 120
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=40.11 E-value=1.4e+02 Score=25.12 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=42.0
Q ss_pred HHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEe
Q 042934 47 ARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHA 126 (282)
Q Consensus 47 l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~v 126 (282)
..+.|.|-|-|..| .. ....+.|+.+|+ . | ....+++-|.++.. .+.-+...||+|.+
T Consensus 80 fa~agad~It~H~E--~~----~~~~r~i~~Ik~-~--------G-----~kaGv~lnP~Tp~~--~i~~~l~~vD~Vll 137 (220)
T COG0036 80 FAKAGADIITFHAE--AT----EHIHRTIQLIKE-L--------G-----VKAGLVLNPATPLE--ALEPVLDDVDLVLL 137 (220)
T ss_pred HHHhCCCEEEEEec--cC----cCHHHHHHHHHH-c--------C-----CeEEEEECCCCCHH--HHHHHHhhCCEEEE
Confidence 34568899999999 21 245677777777 3 3 56666665555442 23456788999999
Q ss_pred eecc
Q 042934 127 VTAS 130 (282)
Q Consensus 127 m~yd 130 (282)
|+-+
T Consensus 138 MsVn 141 (220)
T COG0036 138 MSVN 141 (220)
T ss_pred EeEC
Confidence 9975
No 121
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.67 E-value=61 Score=27.95 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeecC
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAP 62 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~ 62 (282)
....++.+++.|||||+|....+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~ 34 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNP 34 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC
Confidence 35667889999999999987544
No 122
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=38.94 E-value=2e+02 Score=23.94 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEe
Q 042934 47 ARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHA 126 (282)
Q Consensus 47 l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~v 126 (282)
+.+-|.+.+.|.+|... ....+++.+|+ . | ..+-+++-|.... -++..+.+.+|++.|
T Consensus 83 ~a~agas~~tfH~E~~q------~~~~lv~~ir~-~--------G-----mk~G~alkPgT~V--e~~~~~~~~~D~vLv 140 (224)
T KOG3111|consen 83 MAKAGASLFTFHYEATQ------KPAELVEKIRE-K--------G-----MKVGLALKPGTPV--EDLEPLAEHVDMVLV 140 (224)
T ss_pred HHhcCcceEEEEEeecc------CHHHHHHHHHH-c--------C-----CeeeEEeCCCCcH--HHHHHhhccccEEEE
Confidence 44557888888888432 25677777777 3 3 7778887665553 233456678999999
Q ss_pred eecc
Q 042934 127 VTAS 130 (282)
Q Consensus 127 m~yd 130 (282)
||-.
T Consensus 141 MtVe 144 (224)
T KOG3111|consen 141 MTVE 144 (224)
T ss_pred EEec
Confidence 9974
No 123
>PLN02905 beta-amylase
Probab=38.71 E-value=94 Score=30.49 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE--e---e--cCCCchhHhhHHHHHHHHHH
Q 042934 37 KSFIDCSIRIARLYGFQGLDFA--W---T--APNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid--~---e--~~~~~~~~~~~~~fl~~lr~ 80 (282)
+.|..++ ..|+..|+|||.+| | | .|. .-++..|.++++-+|+
T Consensus 286 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~gP~-~YdWsgY~~L~~mvr~ 334 (702)
T PLN02905 286 DGLLKQL-RILKSINVDGVKVDCWWGIVEAHAPQ-EYNWNGYKRLFQMVRE 334 (702)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeeeecCCCC-cCCcHHHHHHHHHHHH
Confidence 3444444 45688999999999 3 3 233 3678999999999988
No 124
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=38.43 E-value=2.9e+02 Score=24.68 Aligned_cols=79 Identities=10% Similarity=0.137 Sum_probs=41.2
Q ss_pred cccCCCCeEEEEEc--C-CCCCC----CccchhhhCChHHHHH---HHHHHHHHHHHcCCCeEEEEeecCCC--------
Q 042934 3 KKENPSITILLSIG--Q-GMDTN----YSIYSSMVSNSSHRKS---FIDCSIRIARLYGFQGLDFAWTAPNT-------- 64 (282)
Q Consensus 3 k~~~~~~kvl~siG--g-~~~~~----~~~~~~~~~~~~~r~~---f~~~i~~~l~~~~~DGidid~e~~~~-------- 64 (282)
|+++.|+|||+-+= . |++.. ...|..+-- +...++ +...++..|++ .||++||-+.+.
T Consensus 112 RAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~f-e~lk~avy~yTk~~l~~m~~---eGi~pdmVQVGNEtn~gflw 187 (403)
T COG3867 112 RAKNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNF-EQLKKAVYSYTKYVLTTMKK---EGILPDMVQVGNETNGGFLW 187 (403)
T ss_pred HHHhcCcEEEeeccchhhccChhhcCCcHHhhhcCH-HHHHHHHHHHHHHHHHHHHH---cCCCccceEeccccCCceec
Confidence 67899999999872 2 33211 122222211 122222 34445555555 468888865432
Q ss_pred ---ch-hHhhHHHHHHHHHHHHhhHH
Q 042934 65 ---ST-DLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 65 ---~~-~~~~~~~fl~~lr~~~l~~~ 86 (282)
.. +.+.+..|+.+-.. ++++.
T Consensus 188 p~Ge~~~f~k~a~L~n~g~~-avrev 212 (403)
T COG3867 188 PDGEGRNFDKMAALLNAGIR-AVREV 212 (403)
T ss_pred cCCCCcChHHHHHHHHHHhh-hhhhc
Confidence 11 34556666666555 66554
No 125
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=38.31 E-value=13 Score=31.82 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCCeEEEEEcCCCCCCCccchhhhCC--hHHHHHHHHHHHHHHHHcCCCeEEEEeec------CC---------CchhH
Q 042934 6 NPSITILLSIGQGMDTNYSIYSSMVSN--SSHRKSFIDCSIRIARLYGFQGLDFAWTA------PN---------TSTDL 68 (282)
Q Consensus 6 ~~~~kvl~siGg~~~~~~~~~~~~~~~--~~~r~~f~~~i~~~l~~~~~DGidid~e~------~~---------~~~~~ 68 (282)
.|+.+.++.+-|..+++.+...+.+.+ +.+..+|.+.++.+..--..||+.+.-+. |. ..-|.
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~ 194 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDS 194 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCH
Confidence 377888888855444355666666666 67778899999886555678999876543 21 12456
Q ss_pred hhHHHHHHHHHH
Q 042934 69 FNIGLLFDEWRI 80 (282)
Q Consensus 69 ~~~~~fl~~lr~ 80 (282)
..|.++++.|++
T Consensus 195 ~lfl~l~k~lkk 206 (323)
T KOG2702|consen 195 NLFLQLCKILKK 206 (323)
T ss_pred HHHHHHHHHHhh
Confidence 788888888887
No 126
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=38.18 E-value=81 Score=24.38 Aligned_cols=51 Identities=6% Similarity=0.010 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEE-eecCCCchhHhhHHHHHHHHHHHHh
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFA-WTAPNTSTDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid-~e~~~~~~~~~~~~~fl~~lr~~~l 83 (282)
+|++-....+.+++++++.+-.-|-|| .||..-..+-.....|+..||. ..
T Consensus 56 ~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD-~~ 107 (136)
T PF05763_consen 56 SPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKD-YA 107 (136)
T ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHH-He
Confidence 567778899999999999555567788 5877654556677888888887 44
No 127
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=38.00 E-value=70 Score=31.02 Aligned_cols=50 Identities=10% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhcc
Q 042934 41 DCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSS 91 (282)
Q Consensus 41 ~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g 91 (282)
+|+++++.+.|++=.-|||..|......-.+...++.+.+ +++......|
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~-Ald~V~~~tG 286 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKE-AVDAVRAITG 286 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHH-HHHHHHHhcC
Confidence 6899999999999999999999863322345555555566 6655544444
No 128
>PLN02801 beta-amylase
Probab=37.95 E-value=1e+02 Score=29.44 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCeEEEE--e---e--cCCCchhHhhHHHHHHHHHH
Q 042934 39 FIDCSIRIARLYGFQGLDFA--W---T--APNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 39 f~~~i~~~l~~~~~DGidid--~---e--~~~~~~~~~~~~~fl~~lr~ 80 (282)
-+..-.+-|+..|+|||.+| | | .|.. -++..|.++++-+|+
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~-YdWsgY~~l~~mvr~ 85 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQ-YDWSAYRSLFELVQS 85 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCc-cCcHHHHHHHHHHHH
Confidence 34444556789999999999 3 3 2332 678899999999988
No 129
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=37.75 E-value=1.7e+02 Score=26.34 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=43.1
Q ss_pred cccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----chhHhhHHHHHHH
Q 042934 3 KKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----STDLFNIGLLFDE 77 (282)
Q Consensus 3 k~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----~~~~~~~~~fl~~ 77 (282)
+++..++.+.+|||+... ......-+.|+..+-.+- . ..|.|+|+.--|.. .++.+.+.++++.
T Consensus 129 ~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~ 197 (335)
T TIGR01036 129 KRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTA 197 (335)
T ss_pred hhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHHHHHHHHHH
Confidence 334557889999987632 011122344555444443 2 28999999976653 2445677888888
Q ss_pred HHHHHhh
Q 042934 78 WRIAATK 84 (282)
Q Consensus 78 lr~~~l~ 84 (282)
+|+ ..+
T Consensus 198 V~~-~~~ 203 (335)
T TIGR01036 198 VKQ-EQD 203 (335)
T ss_pred HHH-HHH
Confidence 888 664
No 130
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=37.62 E-value=1.1e+02 Score=26.05 Aligned_cols=89 Identities=1% Similarity=-0.131 Sum_probs=51.0
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHH
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLF 75 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl 75 (282)
.+++++++|++.+. +.+ ..+...+.+ ++|+|||+.--|.. -.+.+....++
T Consensus 66 ~~~~vivnv~~~~~----------------ee~-~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv 127 (231)
T TIGR00736 66 SRALVSVNVRFVDL----------------EEA-YDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFL 127 (231)
T ss_pred hcCCEEEEEecCCH----------------HHH-HHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHH
Confidence 45589999998642 222 223334444 69999999887762 12455566666
Q ss_pred HHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChh--hhhccccEEEee
Q 042934 76 DEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLN--SRQRNLNWVHAV 127 (282)
Q Consensus 76 ~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~--~l~~~vD~v~vm 127 (282)
+.+++ . +.-|++-+.+.... ....+. .....+|.+.|.
T Consensus 128 ~av~~-~-------------~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 128 TKMKE-L-------------NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred HHHHc-C-------------CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe
Confidence 66665 2 14566666653321 111121 224668999883
No 131
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=36.99 E-value=1e+02 Score=26.16 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=39.8
Q ss_pred HHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEee
Q 042934 48 RLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHAV 127 (282)
Q Consensus 48 ~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~vm 127 (282)
.+.|.|=|-|..|... ....++++.+|+ . | ...-+++-|.+... .+..+...+|+|.||
T Consensus 79 ~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~-~--------G-----~kaGlalnP~T~~~--~l~~~l~~vD~VLvM 137 (229)
T PRK09722 79 ADAGADFITLHPETIN-----GQAFRLIDEIRR-A--------G-----MKVGLVLNPETPVE--SIKYYIHLLDKITVM 137 (229)
T ss_pred HHcCCCEEEECccCCc-----chHHHHHHHHHH-c--------C-----CCEEEEeCCCCCHH--HHHHHHHhcCEEEEE
Confidence 3448888888888321 134567777777 3 2 55666665554432 234567789999999
Q ss_pred ecc
Q 042934 128 TAS 130 (282)
Q Consensus 128 ~yd 130 (282)
+-+
T Consensus 138 sV~ 140 (229)
T PRK09722 138 TVD 140 (229)
T ss_pred EEc
Confidence 985
No 132
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=36.98 E-value=1.1e+02 Score=29.46 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecCCC-----chhHhhHHHHHHHHHHHHhhHH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAPNT-----STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~~~-----~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
.+++.|+.+++.+..+++ +|+||+-||- .+... ..+...-..|++++++ .++..
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~-~v~~~ 230 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRK-MVDRE 230 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHH-HHHHh
Confidence 467888888877777775 8999999994 32210 0111112468888888 77654
No 133
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.45 E-value=63 Score=27.40 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCCeEEEEe
Q 042934 40 IDCSIRIARLYGFQGLDFAW 59 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~ 59 (282)
+..+++.+++.|||||+|.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 56677888899999999965
No 134
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=36.01 E-value=1.1e+02 Score=21.49 Aligned_cols=56 Identities=5% Similarity=-0.033 Sum_probs=41.0
Q ss_pred hhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC---------chhHhhHHHHHHHHHHHHhh
Q 042934 28 SMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT---------STDLFNIGLLFDEWRIAATK 84 (282)
Q Consensus 28 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~---------~~~~~~~~~fl~~lr~~~l~ 84 (282)
.........+.....+...+++++++=--+|.|+... .+.+-.|..|+++|.. .++
T Consensus 16 ~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~-~f~ 80 (88)
T PF04468_consen 16 RLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAR-EFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHH-HhC
Confidence 3333344446666777788888998777777777642 4677899999999999 885
No 135
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=35.94 E-value=1.4e+02 Score=25.28 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=41.6
Q ss_pred HHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEE
Q 042934 46 IARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVH 125 (282)
Q Consensus 46 ~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~ 125 (282)
.+.+.|.|=|-|..|-. ....++++.+|+ . | ...-+++-|..... .+..+...+|+|.
T Consensus 80 ~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~-~--------g-----~k~GlalnP~T~~~--~i~~~l~~vD~Vl 137 (223)
T PRK08745 80 DFADAGATTISFHPEAS------RHVHRTIQLIKS-H--------G-----CQAGLVLNPATPVD--ILDWVLPELDLVL 137 (223)
T ss_pred HHHHhCCCEEEEcccCc------ccHHHHHHHHHH-C--------C-----CceeEEeCCCCCHH--HHHHHHhhcCEEE
Confidence 33446888898888832 235677777777 3 2 55666665554432 2345677899999
Q ss_pred eeecc
Q 042934 126 AVTAS 130 (282)
Q Consensus 126 vm~yd 130 (282)
||+-+
T Consensus 138 vMtV~ 142 (223)
T PRK08745 138 VMSVN 142 (223)
T ss_pred EEEEC
Confidence 99975
No 136
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.32 E-value=2.6e+02 Score=25.58 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEeec---------CCC-------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccE
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFAWTA---------PNT-------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQL 97 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid~e~---------~~~-------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~ 97 (282)
+.++.|++....-. +-|||||+|.=-+ |.+ ....+|=.+|+.|+-. +.++. - +..+
T Consensus 146 ~ii~~f~~AA~rA~-~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~-aVr~~----v--g~~~ 217 (363)
T COG1902 146 EVIEDFARAARRAK-EAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVD-AVREA----V--GADF 217 (363)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHH-HHHHH----h--CCCc
Confidence 34455665555544 4799999998532 111 0123455566665555 44433 1 3446
Q ss_pred EEEEEeccCCC-C-CccC-------hhhhhcc--ccEEEeeecccc
Q 042934 98 ILTARFHYSPP-A-NSYL-------LNSRQRN--LNWVHAVTASYY 132 (282)
Q Consensus 98 ~ls~a~~~~~~-~-~~~~-------~~~l~~~--vD~v~vm~yd~~ 132 (282)
.|.+.+.+... . .+++ ...|.+. +|++++..-..+
T Consensus 218 ~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~ 263 (363)
T COG1902 218 PVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYE 263 (363)
T ss_pred eEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeeccccc
Confidence 67777766555 2 1232 2234333 799988775543
No 137
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.89 E-value=68 Score=27.67 Aligned_cols=46 Identities=9% Similarity=-0.119 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchhH-hhHHHHHHHHHHHHhhHH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTDL-FNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~~-~~~~~fl~~lr~~~l~~~ 86 (282)
...+++.+++.|||||+|....+....+. .....-++++++ .+.+.
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 64 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVN-AIIET 64 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHH-HHHHc
Confidence 34556888999999999965432210000 112445666776 66543
No 138
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=33.60 E-value=2.7e+02 Score=22.93 Aligned_cols=90 Identities=7% Similarity=-0.122 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEE-eecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCcc
Q 042934 34 SHRKSFIDCSIRIARLYGFQGLDFA-WTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSY 112 (282)
Q Consensus 34 ~~r~~f~~~i~~~l~~~~~DGidid-~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~ 112 (282)
.....+...+.+.+++.+.+-|.|| +.......+...+..|+..+.. .+++. +.-.+++...+.. ....
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~-~l~~~-------~~t~llt~~~~~~--~~~~ 167 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIK-FLKSR-------GVTTLLTSEMPSG--SEDD 167 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHH-HHHHT-------TEEEEEEEEESSS--SSSS
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHH-HHHHC-------CCEEEEEEccccC--cccc
Confidence 3457889999999999999999999 2222122445567788888888 77654 2333444443221 1112
Q ss_pred Chhhhhc-cccEEEeeeccccC
Q 042934 113 LLNSRQR-NLNWVHAVTASYYE 133 (282)
Q Consensus 113 ~~~~l~~-~vD~v~vm~yd~~~ 133 (282)
....+.. .+|-|..+.+...+
T Consensus 168 ~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 168 GTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSTSHHHHHSSEEEEEEEEEET
T ss_pred cccchhhhcccEEEEEEEEeeC
Confidence 2334556 78999888886543
No 139
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=33.14 E-value=1.9e+02 Score=25.95 Aligned_cols=134 Identities=11% Similarity=0.143 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeecCCC-----------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccC
Q 042934 38 SFIDCSIRIARLYGFQGLDFAWTAPNT-----------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS 106 (282)
Q Consensus 38 ~f~~~i~~~l~~~~~DGidid~e~~~~-----------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~ 106 (282)
........++...|+|+|||+.-=|.. -.+.+-..++++++++ +.. +.-+|+-+...
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~-av~-----------~iPVTVKiRlG 146 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVE-AVG-----------DIPVTVKIRLG 146 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHH-hhC-----------CCCeEEEEecc
Confidence 555667778888899999999976653 2455678888888888 762 13444444322
Q ss_pred CCCC---ccChh-hhhcc-ccEEEeeecc----ccC--CCCC----CCCCCCCcccCCCCCCCcccHHHHHHHHHHCCCC
Q 042934 107 PPAN---SYLLN-SRQRN-LNWVHAVTAS----YYE--PVST----NFTAPPAALYGSSSGGFARSTDQVLKAWIERGLP 171 (282)
Q Consensus 107 ~~~~---~~~~~-~l~~~-vD~v~vm~yd----~~~--~~~~----~~~~~~spl~~~~~~~~~~~i~~~v~~~~~~g~p 171 (282)
.... ...+. .+.+. ++.+.|.+=- +.+ .|.. ...-+.-|+....+ -.+.+.+.+.+...|
T Consensus 147 ~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGd---I~s~~~a~~~l~~tg-- 221 (323)
T COG0042 147 WDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGD---IKSLEDAKEMLEYTG-- 221 (323)
T ss_pred cCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCC---cCCHHHHHHHHHhhC--
Confidence 2211 11222 23333 7777775431 001 0100 00001123332222 346777766665555
Q ss_pred CCceeeecccceeeeee
Q 042934 172 ADKLVMCLPFYGYAWRL 188 (282)
Q Consensus 172 ~~Kivlglp~yG~~~~~ 188 (282)
.+=+++|=..|+.-|-+
T Consensus 222 ~DgVMigRga~~nP~l~ 238 (323)
T COG0042 222 ADGVMIGRGALGNPWLF 238 (323)
T ss_pred CCEEEEcHHHccCCcHH
Confidence 56688888888877754
No 140
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=32.98 E-value=1.5e+02 Score=23.13 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=21.2
Q ss_pred HHHHcCCCeEEEEe-----ecCCC-chhHhhHHHHHHHHHHHHh
Q 042934 46 IARLYGFQGLDFAW-----TAPNT-STDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 46 ~l~~~~~DGidid~-----e~~~~-~~~~~~~~~fl~~lr~~~l 83 (282)
.+..+.-|-|-|-. ....+ ..-.++|.++++.+|+ +.
T Consensus 45 ~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~-~~ 87 (171)
T cd04502 45 LVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRA-KL 87 (171)
T ss_pred hhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHH-HC
Confidence 34455667777733 21111 1334678888888887 65
No 141
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=32.88 E-value=1.5e+02 Score=24.93 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=41.5
Q ss_pred HHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEE
Q 042934 46 IARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVH 125 (282)
Q Consensus 46 ~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~ 125 (282)
.+.+.|.|=|-|..|-. ....++++.+|+ . | ....+++.|.++.. .+..+...+|+|.
T Consensus 76 ~~~~~gad~i~~H~Ea~------~~~~~~l~~ik~-~--------g-----~k~GlalnP~Tp~~--~i~~~l~~~D~vl 133 (220)
T PRK08883 76 DFAKAGASMITFHVEAS------EHVDRTLQLIKE-H--------G-----CQAGVVLNPATPLH--HLEYIMDKVDLIL 133 (220)
T ss_pred HHHHhCCCEEEEcccCc------ccHHHHHHHHHH-c--------C-----CcEEEEeCCCCCHH--HHHHHHHhCCeEE
Confidence 33446888888888832 235677777777 3 2 45566665554432 3456678899999
Q ss_pred eeecc
Q 042934 126 AVTAS 130 (282)
Q Consensus 126 vm~yd 130 (282)
+|+-+
T Consensus 134 vMtV~ 138 (220)
T PRK08883 134 LMSVN 138 (220)
T ss_pred EEEec
Confidence 99975
No 142
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=31.89 E-value=1.8e+02 Score=28.06 Aligned_cols=51 Identities=16% Similarity=0.042 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEee-cCCC---------------chhHhhHHHHHHHHHHHHhh
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWT-APNT---------------STDLFNIGLLFDEWRIAATK 84 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e-~~~~---------------~~~~~~~~~fl~~lr~~~l~ 84 (282)
+++.|+.+.+.+.-++ +.|+||+-||-- +... -.+......|++++|. .++
T Consensus 168 np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~ 234 (543)
T TIGR02403 168 NPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQ-EVF 234 (543)
T ss_pred CHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHH-Hhh
Confidence 6777777666555455 579999999953 1110 0123456789999998 775
No 143
>PLN03231 putative alpha-galactosidase; Provisional
Probab=31.58 E-value=1.8e+02 Score=26.48 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEe
Q 042934 33 SSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 103 (282)
Q Consensus 33 ~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~ 103 (282)
....+.|.+++++...+-|+|=|-+|+-+.........|. .+++ +|.+. +++..+|++.
T Consensus 158 ~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~----~m~~-AL~~t-------GRpIv~Slc~ 216 (357)
T PLN03231 158 SEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEIL----TVSK-AIRNS-------GRPMIYSLSP 216 (357)
T ss_pred chhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHH----HHHH-HHHHh-------CCCeEEEecC
Confidence 3455789999999999999999999987654322333444 4555 55544 4678999973
No 144
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=31.57 E-value=74 Score=28.23 Aligned_cols=73 Identities=15% Similarity=0.280 Sum_probs=48.5
Q ss_pred ccccCCCCeEEEEE-cCCCCCCCc------------cchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhH
Q 042934 2 LKKENPSITILLSI-GQGMDTNYS------------IYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDL 68 (282)
Q Consensus 2 lk~~~~~~kvl~si-Gg~~~~~~~------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~ 68 (282)
|+.|.|+-.|++.. ||....++. .........+.|.+-+.+.++|....+|-||.++.+-..
T Consensus 180 L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~~Av~fA~~~nL~Giv~~~~~L~----- 254 (300)
T cd08578 180 LNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIKEAVRFAKNNNLLGLILPYSLLN----- 254 (300)
T ss_pred HHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHHHHHHHHHHcCCcEEEecHHHHh-----
Confidence 67888999999765 442210000 011222445789999999999999999999999876432
Q ss_pred hhHHHHHHHHHH
Q 042934 69 FNIGLLFDEWRI 80 (282)
Q Consensus 69 ~~~~~fl~~lr~ 80 (282)
.--++++.+|+
T Consensus 255 -~~P~lV~~ik~ 265 (300)
T cd08578 255 -IVPQLVESIKS 265 (300)
T ss_pred -hChHHHHHHHH
Confidence 12456666666
No 145
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=31.27 E-value=1.9e+02 Score=25.31 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=44.4
Q ss_pred ccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecCCC-------chhHhhHHHHH
Q 042934 4 KENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAPNT-------STDLFNIGLLF 75 (282)
Q Consensus 4 ~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~~~-------~~~~~~~~~fl 75 (282)
++..|+.|++-+.+. ..|+.++..+......-|.||+-+.. +.|.. .-+...|..|+
T Consensus 210 kq~THLPVivDpSH~---------------~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~ 274 (286)
T COG2876 210 KQETHLPVIVDPSHA---------------TGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELV 274 (286)
T ss_pred HhhcCCCEEECCCCc---------------ccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHH
Confidence 344566666655443 34678888899999999999999986 55542 13456889999
Q ss_pred HHHHH
Q 042934 76 DEWRI 80 (282)
Q Consensus 76 ~~lr~ 80 (282)
++++.
T Consensus 275 ~~~~~ 279 (286)
T COG2876 275 KELRA 279 (286)
T ss_pred HHHHH
Confidence 99987
No 146
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=31.18 E-value=49 Score=31.07 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=42.7
Q ss_pred hhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEe
Q 042934 29 MVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 103 (282)
Q Consensus 29 ~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~ 103 (282)
.+++.--|++.++.|+++|.++|||| -|...+... .....|...++-|.. .++ ++|.++..+
T Consensus 99 plrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~-PS~k~F~~IFK~LY~-~lD----------p~f~F~~r~ 160 (622)
T COG5185 99 PLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQ-PSQKGFIIIFKWLYL-RLD----------PGFGFTKRI 160 (622)
T ss_pred ccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcC-CccccHHHHHHHHHh-ccC----------CCCCcchhh
Confidence 35566778899999999999999998 222221111 223578999999998 884 446666554
No 147
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=31.17 E-value=48 Score=33.39 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEE
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFA 58 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid 58 (282)
.+++.|+-+++++.-++++|++||+-||
T Consensus 363 ~~~eVr~fLl~~~~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 363 GNWEVLRFLLSNLRWWLEEYKFDGFRFD 390 (758)
T ss_pred CCHHHHHHHHHHHHHHHHHhCccccccc
Confidence 3568888899999999999999999998
No 148
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=30.47 E-value=3.2e+02 Score=26.46 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=56.6
Q ss_pred cchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEe
Q 042934 25 IYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARF 103 (282)
Q Consensus 25 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~ 103 (282)
.|.--+..++-+.++-+.+.+|-.+.|+- |.+||+-|...-+...-+.++.-+|+ ++..+-|... .....+++..
T Consensus 434 TFRltL~e~~L~~AL~~~~~~f~~qtg~~-~~l~~qlp~~~lpa~qqvHlLqIvRE-AlsNa~KHa~--As~i~V~~~~ 508 (574)
T COG3850 434 TFRLTLQEAELPPALEQMLAEFSNQTGIT-VTLDYQLPPRALPAHQQVHLLQIVRE-ALSNAIKHAQ--ASEIKVTVSQ 508 (574)
T ss_pred HHHHhcccCchHHHHHHHHHHHHhccCCe-EEEeccCCCCCCCHHHHHHHHHHHHH-HHHHHHHhcc--cCeEEEEEEe
Confidence 35566777888888888899999998885 89999988765666677899999999 8877766544 3445555554
No 149
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=30.06 E-value=1.2e+02 Score=24.01 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCCCccchhhh-CChHHHHHHHHHHHHHHHHcC
Q 042934 10 TILLSIGQGMDTNYSIYSSMV-SNSSHRKSFIDCSIRIARLYG 51 (282)
Q Consensus 10 kvl~siGg~~~~~~~~~~~~~-~~~~~r~~f~~~i~~~l~~~~ 51 (282)
-+++++|=.-. .++.+.+. -++++|.+|+-.+..-+.++|
T Consensus 55 ~viVA~gi~ls--~eH~~al~aL~~e~R~efi~~l~~dLlr~~ 95 (161)
T COG5440 55 MVIVAIGIALS--QEHRRALMALNPEKREEFIWKLRRDLLRLG 95 (161)
T ss_pred EEEEEEeeccC--HHHHHHHHhcChHHHHHHHHHHHHHHHhcC
Confidence 34566665432 45555544 499999999999999999997
No 150
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.96 E-value=72 Score=28.20 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=28.5
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEeecC
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAP 62 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~ 62 (282)
..+|+.|+=+.+.+.+++.+.|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 468899999988888888899999999999554
No 151
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.20 E-value=1.2e+02 Score=26.10 Aligned_cols=46 Identities=9% Similarity=-0.034 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchhHhhH-HHHHHHHHHHHhhHH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTDLFNI-GLLFDEWRIAATKLE 86 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~-~~fl~~lr~~~l~~~ 86 (282)
....++.+++.|||||+|....+........+ ..-++++++ .+++.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~ 64 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVK-AIYET 64 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHH-HHHHc
Confidence 35678889999999999975432110000011 234667777 77644
No 152
>PLN02361 alpha-amylase
Probab=28.95 E-value=1.6e+02 Score=27.33 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHHHH-HcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHh
Q 042934 31 SNSSHRKSFIDCSIRIAR-LYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~-~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l 83 (282)
.++..|+.+.+-+ ++++ +.|+||+-||.-.-.+ ..|+++..+ +.
T Consensus 152 ~np~Vr~~l~~~~-~wl~~~~GiDGfRlDavk~~~-------~~f~~~~~~-~~ 196 (401)
T PLN02361 152 TQHFVRKDIIGWL-IWLRNDVGFQDFRFDFAKGYS-------AKFVKEYIE-AA 196 (401)
T ss_pred CCHHHHHHHHHHH-HHHHhcCCCCEEEEeccccCC-------HHHHHHHHH-hh
Confidence 3567777776655 5665 4999999999643333 456777766 54
No 153
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=28.60 E-value=4e+02 Score=23.23 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC
Q 042934 7 PSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT 64 (282)
Q Consensus 7 ~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~ 64 (282)
..+.|++||.|... +..+.+++.+.++- -+.|.++|++-.|..
T Consensus 95 ~~~pvi~Si~~~~~-------------~~~~d~~~~a~~~~--~~ad~lElN~ScPn~ 137 (295)
T PF01180_consen 95 VDIPVIASINGDSE-------------EEIEDWAELAKRLE--AGADALELNLSCPNV 137 (295)
T ss_dssp -CEEEEEEE-TSSS-------------GHHHHHHHHHHHHH--HHCSEEEEESTSTTS
T ss_pred cceeEEEEeecCCc-------------hhHHHHHHHHHHhc--CcCCceEEEeeccCC
Confidence 47899999988631 23344554444333 468999999987764
No 154
>PRK13840 sucrose phosphorylase; Provisional
Probab=28.50 E-value=1.9e+02 Score=27.71 Aligned_cols=54 Identities=6% Similarity=-0.073 Sum_probs=34.7
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEe-ec----CCC-chhHhhHHHHHHHHHHHHhhH
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAW-TA----PNT-STDLFNIGLLFDEWRIAATKL 85 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~----~~~-~~~~~~~~~fl~~lr~~~l~~ 85 (282)
..||+.|+.+.+ ++.+..+.|.||+-||- .+ +++ ......--.|++++|. .++.
T Consensus 166 ~~NP~V~~~i~~-il~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~-~~~~ 225 (495)
T PRK13840 166 VHSAAGWEYLMS-ILDRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAK-EARA 225 (495)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHH-Hhhh
Confidence 457777777766 55666677999999994 22 221 1112334578999998 7753
No 155
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=28.35 E-value=1.5e+02 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCeEEEE--eec-CCCchhHhhHHHHHHHHHH
Q 042934 41 DCSIRIARLYGFQGLDFA--WTA-PNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 41 ~~i~~~l~~~~~DGidid--~e~-~~~~~~~~~~~~fl~~lr~ 80 (282)
+|+.+.++..+..|||+. .|. |+ ..|.....+|++.++.
T Consensus 166 eNv~~ai~~~~p~gvDvsSgvE~~~G-~KD~~ki~~f~~~~~~ 207 (210)
T PRK01222 166 DNVAEAIRQVRPYGVDVSSGVESAPG-IKDPEKIRAFIEAVKS 207 (210)
T ss_pred HHHHHHHHhcCCCEEEecCceECCCC-CcCHHHHHHHHHHHHh
Confidence 466666777678899998 575 54 3778889999998876
No 156
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.15 E-value=69 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=26.3
Q ss_pred ccchhhhCChHHHHHHHHHHHHHHHHcCCC
Q 042934 24 SIYSSMVSNSSHRKSFIDCSIRIARLYGFQ 53 (282)
Q Consensus 24 ~~~~~~~~~~~~r~~f~~~i~~~l~~~~~D 53 (282)
..+..+.++|+.|++|..+=-.++++||++
T Consensus 8 rli~~L~~dp~~rerF~~DPea~~~~~gLt 37 (81)
T cd07922 8 RLIQELFKDPGLIERFQDDPSAVFEEYGLT 37 (81)
T ss_pred HHHHHHhcCHHHHHHHHHCHHHHHHHcCCC
Confidence 346678899999999999999999999975
No 157
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=27.92 E-value=70 Score=28.86 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=24.2
Q ss_pred eCCHHHHHHHHHHHhhCCCceEEEEee
Q 042934 249 FDDVEAVRMKVAYAKEKKLRGYFVWRV 275 (282)
Q Consensus 249 ydd~~S~~~K~~~~~~~glgGv~~W~l 275 (282)
..|+++++..+++|+++|+-|+.+|--
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Y 80 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHY 80 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEee
Confidence 458999999999999999999999853
No 158
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=27.47 E-value=2.3e+02 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCC----------chhHhhHHHHHHHHHHHHhh
Q 042934 37 KSFIDCSIRIARLYGFQGLDFAWTAPNT----------STDLFNIGLLFDEWRIAATK 84 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid~e~~~~----------~~~~~~~~~fl~~lr~~~l~ 84 (282)
..|++.++..+.+.|+.||.++|..-.. ...-..+..|+..+++ .+.
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~-~~~ 146 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKA-RFP 146 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHH-hCC
Confidence 3599999999999999999999985432 1233567788888877 664
No 159
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=27.37 E-value=1.6e+02 Score=27.26 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCeEEEEe-----ec--CCCchhHhhHHHHHHHHHH
Q 042934 39 FIDCSIRIARLYGFQGLDFAW-----TA--PNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 39 f~~~i~~~l~~~~~DGidid~-----e~--~~~~~~~~~~~~fl~~lr~ 80 (282)
-++.-.+-|+..|+|||.+|. |. |. .-+...|.++++-+|+
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~ydWs~Y~~l~~~vr~ 64 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYDWSGYRELFEMVRD 64 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccCcHHHHHHHHHHHH
Confidence 344445667889999999993 32 33 3678899999999998
No 160
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=27.28 E-value=60 Score=16.75 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.0
Q ss_pred EEEeCCHHHHHHHHHHHhhCCC
Q 042934 246 WFGFDDVEAVRMKVAYAKEKKL 267 (282)
Q Consensus 246 ~i~ydd~~S~~~K~~~~~~~gl 267 (282)
+++++ ..++..+++|.++.|+
T Consensus 10 il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 10 ILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred ccccc-HHHhhHHHHHHHHcCC
Confidence 45566 9999999999997775
No 161
>PTZ00445 p36-lilke protein; Provisional
Probab=27.24 E-value=3.6e+02 Score=22.76 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeecC
Q 042934 37 KSFIDCSIRIARLYGFQGLDFAWTAP 62 (282)
Q Consensus 37 ~~f~~~i~~~l~~~~~DGidid~e~~ 62 (282)
..-++..++.|++.|+-.|-+|+...
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnT 53 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLT 53 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhh
Confidence 44556667779999999999888743
No 162
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=27.15 E-value=3.6e+02 Score=25.85 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=65.0
Q ss_pred cccCCCCeEEEEE---cCCCCCCCc--cchhhh--CChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-c---------
Q 042934 3 KKENPSITILLSI---GQGMDTNYS--IYSSMV--SNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-S--------- 65 (282)
Q Consensus 3 k~~~~~~kvl~si---Gg~~~~~~~--~~~~~~--~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-~--------- 65 (282)
++.+|++|++.|- =+|.-++.. ....+. ..++.++.+++=+++|++.|.=-||+|+---+.. |
T Consensus 163 ~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~ 242 (496)
T PF02055_consen 163 LAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYP 242 (496)
T ss_dssp HHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-S
T ss_pred HHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCC
Confidence 4567889999885 112211110 001111 1346789999999999999998899997532221 0
Q ss_pred -----hhHhhHHHHHHH-HHHHHhhHHHhhccCCCccEEEEEEecc--CCCC--CccChhhhhccccEEEeeecc
Q 042934 66 -----TDLFNIGLLFDE-WRIAATKLEAKNSSRQQSQLILTARFHY--SPPA--NSYLLNSRQRNLNWVHAVTAS 130 (282)
Q Consensus 66 -----~~~~~~~~fl~~-lr~~~l~~~~~~~g~~~~~~~ls~a~~~--~~~~--~~~~~~~l~~~vD~v~vm~yd 130 (282)
-..+....||+. |+- +|+.... | ..-.++...-.. .+.+ .-+.-+...+++|-+-+..|.
T Consensus 243 ~~s~~~t~~~~~~Fi~~~LgP-~l~~~~~--g--~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~ 312 (496)
T PF02055_consen 243 WPSMGWTPEEQADFIKNYLGP-ALRKAGL--G--KDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYG 312 (496)
T ss_dssp SC--B--HHHHHHHHHHTHHH-HHHTSTT-----TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETT
T ss_pred CCcCCCCHHHHHHHHHHHHHH-HHHhcCC--C--CceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCC
Confidence 112456788886 888 8864411 0 011233333211 1111 112234566788888888873
No 163
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.12 E-value=3.5e+02 Score=22.13 Aligned_cols=167 Identities=18% Similarity=0.140 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCc
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANS 111 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~ 111 (282)
+|-+|+.-+..+ ..|.|=| |-..|...+--.||.=.|+++|+ ..+ ....+|.++.--|.-.+
T Consensus 6 SPin~eEA~eAi-----eGGAdIi--DVKNP~EGSLGANFPWvIr~i~E-v~p----------~d~~vSAT~GDvpYKPG 67 (235)
T COG1891 6 SPINREEAIEAI-----EGGADII--DVKNPAEGSLGANFPWVIREIRE-VVP----------EDQEVSATVGDVPYKPG 67 (235)
T ss_pred ccCCHHHHHHHh-----hCCCceE--eccCcccCcccCCChHHHHHHHH-hCc----------cceeeeeeecCCCCCCc
Confidence 444554443332 3466655 45566543445799999999999 764 34788888643322211
Q ss_pred -c---ChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCCCCcccHHHHHHHHH-----HCCCCCCceeeecccc
Q 042934 112 -Y---LLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWI-----ERGLPADKLVMCLPFY 182 (282)
Q Consensus 112 -~---~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~~~~~~i~~~v~~~~-----~~g~p~~Kivlglp~y 182 (282)
- -+-.....+||+-|--|+.. +-+.+++.+. -+-+.++|+++.-. |
T Consensus 68 T~slAalGaav~GaDYiKVGLYg~k------------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAaG-Y 122 (235)
T COG1891 68 TASLAALGAAVAGADYIKVGLYGTK------------------------NEEEALEVMKNVVRAVKDFDPSKKVVAAG-Y 122 (235)
T ss_pred hHHHHHHHhHhhCCceEEEeecccc------------------------cHHHHHHHHHHHHHHHhccCCCceEEecc-c
Confidence 1 12234466899999777532 2223333222 13378888887532 3
Q ss_pred eeeeeecCCCCCCCCccccCCCCCCCCccchHHHHHhhhhCCCCeEEEEeCceeeEEEE-eCCEEEEeCCHHHHHHHHHH
Q 042934 183 GYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGPDVQVMYNSTYEVNYCS-IEKIWFGFDDVEAVRMKVAY 261 (282)
Q Consensus 183 G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~l~~~~~~~~~~~D~~~~~~y~~-~~~~~i~ydd~~S~~~K~~~ 261 (282)
+-.++. +.++=-.+.+...+.+ ... ....-.. +++..+-|.+.+-+..=.+.
T Consensus 123 aDa~Rv--------------------gsv~Pl~~P~vaa~ag--~Dv-----aMvDTaiKDGkslFdfm~~e~l~eFvd~ 175 (235)
T COG1891 123 ADAHRV--------------------GSVSPLLLPEVAAEAG--ADV-----AMVDTAIKDGKSLFDFMDEEELEEFVDL 175 (235)
T ss_pred cchhhc--------------------cCcCccccHHHHHhcC--CCE-----EEEecccccchhHHhhhcHHHHHHHHHH
Confidence 322221 1111122222222333 110 0111111 45556678899999999999
Q ss_pred HhhCCCc
Q 042934 262 AKEKKLR 268 (282)
Q Consensus 262 ~~~~glg 268 (282)
++++||-
T Consensus 176 Ah~hGL~ 182 (235)
T COG1891 176 AHEHGLE 182 (235)
T ss_pred HHHcchH
Confidence 9999873
No 164
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=27.10 E-value=3.2e+02 Score=22.64 Aligned_cols=73 Identities=8% Similarity=-0.041 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCeEEEEeecCCCchhH----hhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCC-CccChhhh
Q 042934 43 SIRIARLYGFQGLDFAWTAPNTSTDL----FNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPA-NSYLLNSR 117 (282)
Q Consensus 43 i~~~l~~~~~DGidid~e~~~~~~~~----~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-~~~~~~~l 117 (282)
+++.+...|+|-|-||+|....+.++ .+...+++.++. .- .....+-+.++..... ..-|+..+
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~-~~----------~~~~~~~VRvn~~~~~~~~~Dl~~l 81 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRA-AR----------AAGSEIIVRVNSLDSPHIERDLEAL 81 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHH-HT----------TSSSEEEEE-SSTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcc-cc----------cccccceecCCCCCcchhhhhhhhc
Confidence 34455678999999999987653333 455555555544 21 1225666666554321 11222245
Q ss_pred hccccEEEe
Q 042934 118 QRNLNWVHA 126 (282)
Q Consensus 118 ~~~vD~v~v 126 (282)
...+|.|.+
T Consensus 82 ~~g~~gI~l 90 (221)
T PF03328_consen 82 DAGADGIVL 90 (221)
T ss_dssp HTTSSEEEE
T ss_pred ccCCCeeec
Confidence 556676644
No 165
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=26.51 E-value=2.5e+02 Score=23.78 Aligned_cols=55 Identities=4% Similarity=-0.011 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCc-----------hhHhhHHHHHH
Q 042934 8 SITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTS-----------TDLFNIGLLFD 76 (282)
Q Consensus 8 ~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~-----------~~~~~~~~fl~ 76 (282)
+..+.++|.|... +. ...+++.+.++ .|+|||+..-|... .+.+....+++
T Consensus 72 ~~p~~vqi~g~~~----------------~~-~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~ 133 (233)
T cd02911 72 NVLVGVNVRSSSL----------------EP-LLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIK 133 (233)
T ss_pred CCeEEEEecCCCH----------------HH-HHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHH
Confidence 5577888876532 22 23445555665 59999999866531 23445566666
Q ss_pred HHHH
Q 042934 77 EWRI 80 (282)
Q Consensus 77 ~lr~ 80 (282)
++|+
T Consensus 134 avr~ 137 (233)
T cd02911 134 ALKE 137 (233)
T ss_pred HHHh
Confidence 6666
No 166
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=26.48 E-value=1.2e+02 Score=26.15 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHH
Q 042934 42 CSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
.+++++..-|||.|-||.|+-. -+......+++..+.
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~i~a~~~ 67 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAP--NDVSTFIPQLMALKG 67 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCC--CCHHHHHHHHHHHhh
Confidence 4567778889999999999764 444555556555544
No 167
>PRK12677 xylose isomerase; Provisional
Probab=26.44 E-value=2e+02 Score=26.48 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeec--CCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTA--PNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~--~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
....+..+.+.||+||.|..+. |.. .+...-...++++++ .+.+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~-~~~~~~~~~~~~lk~-~l~~~ 79 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFG-ATDAERDRIIKRFKK-ALDET 79 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCC-CChhhhHHHHHHHHH-HHHHc
Confidence 4567788899999999997552 221 111111235677777 76643
No 168
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=26.44 E-value=1.3e+02 Score=26.24 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHH
Q 042934 42 CSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
.+++++..-|||.|-||.|+-. -+......+++.++.
T Consensus 30 ~~~E~~a~~GfD~v~iD~EHg~--~~~~~l~~~i~a~~~ 66 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEHAP--NTIQDLYHQLQAIAP 66 (267)
T ss_pred HHHHHHHHcCCCEEEEccccCC--CCHHHHHHHHHHHHh
Confidence 4566777889999999999864 444455555555554
No 169
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=26.24 E-value=2.8e+02 Score=27.76 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHc-CCCeEEEEe-------ecCCC---------------------ch--------hHhhHHHHHHHHH
Q 042934 37 KSFIDCSIRIARLY-GFQGLDFAW-------TAPNT---------------------ST--------DLFNIGLLFDEWR 79 (282)
Q Consensus 37 ~~f~~~i~~~l~~~-~~DGidid~-------e~~~~---------------------~~--------~~~~~~~fl~~lr 79 (282)
++.|.+|-+=|..| .||||=|.= |.... ++ ....+..|-.+|+
T Consensus 443 ~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~~w~~~k~~~l~~f~~~l~ 522 (672)
T PRK14581 443 RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQRWTRYKSKYLIDFTNELT 522 (672)
T ss_pred HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677887778887 699997743 32220 00 1134567888888
Q ss_pred HHHhhHHHhhccCCCccEEEEEEeccCCCC-------CccChhhhhccccEEEeeeccccCCCCCCCCCCCCcccCCCCC
Q 042934 80 IAATKLEAKNSSRQQSQLILTARFHYSPPA-------NSYLLNSRQRNLNWVHAVTASYYEPVSTNFTAPPAALYGSSSG 152 (282)
Q Consensus 80 ~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~-------~~~~~~~l~~~vD~v~vm~yd~~~~~~~~~~~~~spl~~~~~~ 152 (282)
. .++.. . ++.+...--+.+.+.. -.-++..+.+..||+.+|+|-+... ...+.+
T Consensus 523 ~-~v~~~----~--~p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~----~~~~~~-------- 583 (672)
T PRK14581 523 R-EVRDI----R--GPQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEK----VPLSES-------- 583 (672)
T ss_pred H-HHHhh----c--CccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhc----cccccH--------
Confidence 8 77653 0 1122222223333222 2236677788899999999965421 011111
Q ss_pred CCcccHHHHHHHHHHCCCCCCceeeecccceeeee
Q 042934 153 GFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWR 187 (282)
Q Consensus 153 ~~~~~i~~~v~~~~~~g~p~~Kivlglp~yG~~~~ 187 (282)
..+....++.+.+.-...+|+|+-|-+ ++|+
T Consensus 584 --~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 584 --NEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred --HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 234555555555444467999998765 4553
No 170
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=25.71 E-value=2.4e+02 Score=22.91 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhcccc
Q 042934 43 SIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLN 122 (282)
Q Consensus 43 i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD 122 (282)
.++.+.+.|.|||.+.-+.+ .....+++.+++ . +....+.+. +.... -.+..+...+|
T Consensus 71 ~~~~~~~~gadgv~vh~~~~------~~~~~~~~~~~~-~-----------g~~~~~~~~--~~t~~--e~~~~~~~~~d 128 (210)
T TIGR01163 71 YIEDFAEAGADIITVHPEAS------EHIHRLLQLIKD-L-----------GAKAGIVLN--PATPL--EFLEYVLPDVD 128 (210)
T ss_pred HHHHHHHcCCCEEEEccCCc------hhHHHHHHHHHH-c-----------CCcEEEEEC--CCCCH--HHHHHHHhhCC
Confidence 36667789999998865421 234566666665 2 122444443 22211 12445556689
Q ss_pred EEEeeecc
Q 042934 123 WVHAVTAS 130 (282)
Q Consensus 123 ~v~vm~yd 130 (282)
++.+++.+
T Consensus 129 ~i~~~~~~ 136 (210)
T TIGR01163 129 LVLLMSVN 136 (210)
T ss_pred EEEEEEEc
Confidence 99888864
No 171
>PRK09989 hypothetical protein; Provisional
Probab=25.52 E-value=1.6e+02 Score=25.04 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
....++.+++.|||||+|-..+. . -.+++++ .++..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~---~-------~~~~~~~-~l~~~ 52 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD---Y-------STLQIQK-QLEQN 52 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc---C-------CHHHHHH-HHHHc
Confidence 34667888999999999954221 1 1456777 66643
No 172
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.22 E-value=1.3e+02 Score=25.94 Aligned_cols=46 Identities=13% Similarity=-0.097 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchh-HhhHHHHHHHHHHHHhhHH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTD-LFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~-~~~~~~fl~~lr~~~l~~~ 86 (282)
....++.+++.|||||+|....+..... ...-...+++++. .+++.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~ 69 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVN-ALVET 69 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHH-HHHHc
Confidence 4456778889999999997543211000 0001335666666 66543
No 173
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=25.06 E-value=3.3e+02 Score=21.16 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=40.0
Q ss_pred HHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccE
Q 042934 44 IRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNW 123 (282)
Q Consensus 44 ~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~ 123 (282)
...+++.|+|+|.|.-+.+.. ......+++++|+ .+. +..+.+.+.+....... ......+|+
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~-~~~-----------~~~v~~~~~~~~~~~~~--~~~~~g~d~ 139 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL---AREDLELIRELRE-AVP-----------DVKVVVKLSPTGELAAA--AAEEAGVDE 139 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHH-hcC-----------CceEEEEECCCCccchh--hHHHcCCCE
Confidence 578888999999999775432 2234566777777 551 25666665443322110 012334788
Q ss_pred EEeeec
Q 042934 124 VHAVTA 129 (282)
Q Consensus 124 v~vm~y 129 (282)
+.+...
T Consensus 140 i~~~~~ 145 (200)
T cd04722 140 VGLGNG 145 (200)
T ss_pred EEEcCC
Confidence 876543
No 174
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=25.04 E-value=2.2e+02 Score=28.73 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--chhHhhHHHHHHHHHHHHhhH
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--STDLFNIGLLFDEWRIAATKL 85 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--~~~~~~~~~fl~~lr~~~l~~ 85 (282)
-+|+...+|-+..-++|...|+|||-+|-+.... .....+-+++.+.... +|..
T Consensus 367 v~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~-ALe~ 422 (758)
T PLN02355 367 VNPEKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQ-ALEA 422 (758)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHH-HHHH
Confidence 3688889999999999999999999999765331 1122334556666655 5554
No 175
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.93 E-value=3.1e+02 Score=23.03 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=31.4
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcC-CCeEEEEee
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYG-FQGLDFAWT 60 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidid~e 60 (282)
...|+||+++||.--. .. ..-....-..+++..+.++-+ +++|+|.||
T Consensus 116 l~eGl~ViaCIGE~le--eR------EaG~t~dVv~~Ql~aiad~v~~w~niviAYE 164 (247)
T KOG1643|consen 116 LAEGLKVIACIGETLE--ER------EAGKTLDVVFRQLKAIADKVKDWSNIVIAYE 164 (247)
T ss_pred HHcCCeEEEEecccHH--hh------hcCchHHHHHHHHHHHHHhcCCccceEEEee
Confidence 4579999999997432 10 001122335566677777765 899999999
No 176
>PRK14057 epimerase; Provisional
Probab=24.77 E-value=4e+02 Score=23.04 Aligned_cols=84 Identities=7% Similarity=0.036 Sum_probs=48.7
Q ss_pred hhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccC
Q 042934 27 SSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYS 106 (282)
Q Consensus 27 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~ 106 (282)
+-|+.+| +++++.. .+.|.|=|-|..|-. ....+.++.+|+ .=... .-| +.+....+++-|.
T Consensus 81 HLMV~~P---~~~i~~~----~~aGad~It~H~Ea~------~~~~~~l~~Ir~-~G~k~--~~~--~~~~kaGlAlnP~ 142 (254)
T PRK14057 81 HLMVADQ---WTAAQAC----VKAGAHCITLQAEGD------IHLHHTLSWLGQ-QTVPV--IGG--EMPVIRGISLCPA 142 (254)
T ss_pred EeeeCCH---HHHHHHH----HHhCCCEEEEeeccc------cCHHHHHHHHHH-cCCCc--ccc--cccceeEEEECCC
Confidence 4455555 3344433 345889999999832 235667777777 31000 001 1234667777665
Q ss_pred CCCCccChhhhhccccEEEeeecc
Q 042934 107 PPANSYLLNSRQRNLNWVHAVTAS 130 (282)
Q Consensus 107 ~~~~~~~~~~l~~~vD~v~vm~yd 130 (282)
++.. .+..+...+|+|.||+-+
T Consensus 143 Tp~e--~i~~~l~~vD~VLvMtV~ 164 (254)
T PRK14057 143 TPLD--VIIPILSDVEVIQLLAVN 164 (254)
T ss_pred CCHH--HHHHHHHhCCEEEEEEEC
Confidence 5442 234566789999999975
No 177
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=24.63 E-value=2.4e+02 Score=28.44 Aligned_cols=56 Identities=13% Similarity=0.013 Sum_probs=40.3
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--chhHhhHHHHHHHHHHHHhhHH
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
+-+|+...+|-+..-++|..-|+|||-+|-+.... ......-++|.+.... ++...
T Consensus 357 lv~P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~-ALe~S 414 (750)
T PLN02684 357 LVNPKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQ-ALDAS 414 (750)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHH-HHHHH
Confidence 35678889999999999999999999999765321 1223345566666666 66543
No 178
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=24.32 E-value=1.8e+02 Score=28.17 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCeEEEEe-ecCCCc----h-----------hHhhHHHHHHHHHHHHh
Q 042934 31 SNSSHRKSFIDCSIRIARLYGFQGLDFAW-TAPNTS----T-----------DLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 31 ~~~~~r~~f~~~i~~~l~~~~~DGidid~-e~~~~~----~-----------~~~~~~~fl~~lr~~~l 83 (282)
.+++.|+.+.+.+.-++ ++|+||+-||- .+.... . +......|+++++. .+
T Consensus 174 ~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 240 (551)
T PRK10933 174 ENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNR-DV 240 (551)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHH-Hh
Confidence 46777777776555555 68999999994 221110 0 11235689999988 54
No 179
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=23.75 E-value=1.7e+02 Score=27.39 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHH-HHHHHHHhhHHHhhcc
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLF-DEWRIAATKLEAKNSS 91 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl-~~lr~~~l~~~~~~~g 91 (282)
-++++.++.+.|+|=..|+|-.|.......++...+ ..|.+ ++.......|
T Consensus 128 ~~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~-aid~v~~itg 179 (445)
T COG3243 128 EKSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSE-AIDTVKDITG 179 (445)
T ss_pred CccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHH-HHHHHHHHhC
Confidence 358899999999999999999998655666777777 55555 5554433334
No 180
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.33 E-value=86 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 44 IRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 44 ~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
++.+++.|||||+|.......... ...-++++++ .+++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~---~~~~~~~~~~-~~~~~ 39 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE---KDDEAEELRR-LLEDY 39 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH---HHHHHHHHHH-HHHHT
T ss_pred ChHHHHcCCCEEEEecCCCccccc---chHHHHHHHH-HHHHc
Confidence 367899999999999764432111 1455666666 66543
No 181
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=23.22 E-value=1.6e+02 Score=25.30 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=25.6
Q ss_pred HHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHH
Q 042934 42 CSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
.+++++..-|||.|-||.|+-. -+......+++.++.
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~~~a~~~ 60 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAP--NDVLTFIPQLMALKG 60 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCC--CCHHHHHHHHHHHhh
Confidence 4566777889999999999764 344455555555544
No 182
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.19 E-value=2e+02 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCC-chhHhhHHHHHHHHHHHHhhHH
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNT-STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~-~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
....++.+++.|||||++....+.. ..+. -..-+++|++ .+++.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~--~~~~~~~l~~-~~~~~ 59 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDL--KAGGIKQIKA-LAQTY 59 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcccccccc--CchHHHHHHH-HHHHc
Confidence 5677888999999999994332211 0110 0134667777 66543
No 183
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=23.11 E-value=1.9e+02 Score=24.60 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCeEEEE-eecCCC---------chhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCC
Q 042934 41 DCSIRIARLYGFQGLDFA-WTAPNT---------STDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPP 108 (282)
Q Consensus 41 ~~i~~~l~~~~~DGidid-~e~~~~---------~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~ 108 (282)
+..++.|+ .|.+.|+|| |..+.. -...-.|..-++.+|+-+|... .-+++||+-..+...
T Consensus 33 e~y~~aL~-~GcR~vElD~wdg~dgePvV~Hg~tlts~i~f~dv~~~I~~~AF~~S-------~yPvIlslE~Hcs~~ 102 (229)
T cd08627 33 EAYARCLR-MGCRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHAFVTS-------EYPIILSIEDHCSIV 102 (229)
T ss_pred HHHHHHHH-hCCCEEEEEeecCCCCCEEEEeCCcCCCceEHHHHHHHHHHhhccCC-------CCCEEEEEcccCCHH
Confidence 34444444 499999999 554432 1334578888888888556533 457888888877654
No 184
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.09 E-value=1.5e+02 Score=25.40 Aligned_cols=43 Identities=12% Similarity=-0.009 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhH
Q 042934 42 CSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKL 85 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~ 85 (282)
..+..+.+.||++|+|....|........-...++++++ .+++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~-~~~~ 56 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKE-ALKE 56 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHH-HHHH
Confidence 456777889999999998877431111112235666777 6653
No 185
>PRK06354 pyruvate kinase; Provisional
Probab=22.86 E-value=6.5e+02 Score=24.74 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=40.5
Q ss_pred CccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHH
Q 042934 1 TLKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRI 80 (282)
Q Consensus 1 ~lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~ 80 (282)
.||..-...|++.+||-... +. ++++-|.+.|.|.+-|++-+-.. +........++++.+
T Consensus 2 ~~~~~~r~tKIi~TiGPas~-----------~~--------e~l~~li~aG~~v~RlN~sHg~~-e~~~~~i~~ir~~~~ 61 (590)
T PRK06354 2 SLRDLMRRTKIVATIGPASE-----------SP--------EKLRQLIEAGATTARLNFSHGDH-EEHGARIKNIREASK 61 (590)
T ss_pred CCCCCCCCceEEEeeCCCCC-----------CH--------HHHHHHHHcCCCEEEEECCCCCH-HHHHHHHHHHHHHHH
Confidence 46777889999999985432 11 12333445699999999986543 555555666666655
Q ss_pred HHh
Q 042934 81 AAT 83 (282)
Q Consensus 81 ~~l 83 (282)
.+
T Consensus 62 -~~ 63 (590)
T PRK06354 62 -KL 63 (590)
T ss_pred -Hh
Confidence 54
No 186
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=22.77 E-value=3.2e+02 Score=22.34 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEE
Q 042934 45 RIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWV 124 (282)
Q Consensus 45 ~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v 124 (282)
+.+.+.|.|||-+.-+.. +....+++.+|. . | +.+.+.+.+.... -....+...+||+
T Consensus 78 ~~~~~~g~d~v~vh~~~~------~~~~~~~~~~~~-~--------~-----~~~g~~~~~~t~~--e~~~~~~~~~d~i 135 (220)
T PRK05581 78 PDFAKAGADIITFHVEAS------EHIHRLLQLIKS-A--------G-----IKAGLVLNPATPL--EPLEDVLDLLDLV 135 (220)
T ss_pred HHHHHcCCCEEEEeeccc------hhHHHHHHHHHH-c--------C-----CEEEEEECCCCCH--HHHHHHHhhCCEE
Confidence 444578999988876632 123455665555 2 1 4444444322221 1234566678999
Q ss_pred Eeeecc
Q 042934 125 HAVTAS 130 (282)
Q Consensus 125 ~vm~yd 130 (282)
.+++.+
T Consensus 136 ~~~~~~ 141 (220)
T PRK05581 136 LLMSVN 141 (220)
T ss_pred EEEEEC
Confidence 998864
No 187
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=22.68 E-value=3.9e+02 Score=24.24 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=50.2
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCC------CchhHhhHHHHH
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPN------TSTDLFNIGLLF 75 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~------~~~~~~~~~~fl 75 (282)
+|+.+|+..++.+||.... . . .+++. +.+.++.-+-|.++|....+. ...+...+...+
T Consensus 114 vr~~~p~~p~~aNl~~~~~--~-~-----~~~~~-------~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i 178 (352)
T PRK05437 114 VRKVAPDGLLFANLGAVQL--Y-G-----YGVEE-------AQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNI 178 (352)
T ss_pred HHHHCCCceEEeecCcccc--C-C-----CCHHH-------HHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHH
Confidence 4667788888888887542 1 1 11211 222233335688888873221 112233344777
Q ss_pred HHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhh-hccccEEEeeec
Q 042934 76 DEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSR-QRNLNWVHAVTA 129 (282)
Q Consensus 76 ~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l-~~~vD~v~vm~y 129 (282)
+++++ .++ .+..+-.. +. .........+ ...+|.|.|...
T Consensus 179 ~~i~~-~~~----------vPVivK~~--g~-g~s~~~a~~l~~~Gvd~I~Vsg~ 219 (352)
T PRK05437 179 AEIVS-ALP----------VPVIVKEV--GF-GISKETAKRLADAGVKAIDVAGA 219 (352)
T ss_pred HHHHH-hhC----------CCEEEEeC--CC-CCcHHHHHHHHHcCCCEEEECCC
Confidence 77777 652 23443332 21 1111223333 345999988653
No 188
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=1.9e+02 Score=26.83 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=38.2
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhCCh----HHHHH-----HHHHHHHHHHHcC--CC-eEEEE--eecCCCchhHhh
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVSNS----SHRKS-----FIDCSIRIARLYG--FQ-GLDFA--WTAPNTSTDLFN 70 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~~~----~~r~~-----f~~~i~~~l~~~~--~D-Gidid--~e~~~~~~~~~~ 70 (282)
+..|.++++-|||++. ++.|| +.|+. ..+++.++.++.+ +| -..|= -++. ..-+
T Consensus 61 Q~aGh~~ivLigd~ta--------~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~----~~~~ 128 (401)
T COG0162 61 QDAGHKPIVLIGDATA--------MIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWL----KKLN 128 (401)
T ss_pred HHCCCeEEEEecccce--------ecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHh----CcCC
Confidence 5578899999999875 34443 33333 3366666666665 44 22221 1222 2356
Q ss_pred HHHHHHHHHH
Q 042934 71 IGLLFDEWRI 80 (282)
Q Consensus 71 ~~~fl~~lr~ 80 (282)
|..||+.+..
T Consensus 129 y~~~l~~~g~ 138 (401)
T COG0162 129 YLDFLRDVGK 138 (401)
T ss_pred HHHHHHHHHh
Confidence 8999998855
No 189
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.40 E-value=4.8e+02 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHCCCCCCceee
Q 042934 156 RSTDQVLKAWIERGLPADKLVM 177 (282)
Q Consensus 156 ~~i~~~v~~~~~~g~p~~Kivl 177 (282)
...+..++.+.+.|+++++|++
T Consensus 150 ~~~~~~i~~~~~~Gi~~~~Iil 171 (258)
T cd00423 150 EFLEERVEAATEAGIPPEDIIL 171 (258)
T ss_pred HHHHHHHHHHHHcCCCHHHEEE
Confidence 3566777778899999999998
No 190
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.37 E-value=1.5e+02 Score=18.04 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=20.8
Q ss_pred chhhhCChHHHHHHHH-----HHHHHHHHcCCC
Q 042934 26 YSSMVSNSSHRKSFID-----CSIRIARLYGFQ 53 (282)
Q Consensus 26 ~~~~~~~~~~r~~f~~-----~i~~~l~~~~~D 53 (282)
+..+.+|++-|+++.. .++++.+.+||+
T Consensus 10 l~~~~~d~~l~~~l~~~~~~~e~~~lA~~~Gy~ 42 (49)
T PF07862_consen 10 LEKVKSDPELREQLKACQNPEEVVALAREAGYD 42 (49)
T ss_pred HHHHhcCHHHHHHHHhcCCHHHHHHHHHHcCCC
Confidence 4556678888877765 678888998874
No 191
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.31 E-value=1.1e+02 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.369 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT 64 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~ 64 (282)
+|+.-.++|+..+.-+.--+|-|||| +-+|..
T Consensus 43 ~P~eeaklIe~TM~eId~e~F~GIei-~s~p~~ 74 (118)
T COG3365 43 TPEEEAKLIEMTMSEIDPENFSGIEI-YSYPPK 74 (118)
T ss_pred ChHHHHHHHHHHHHhcCcccccceEE-EEeCCc
Confidence 55677889999888888889999999 455654
No 192
>PRK08187 pyruvate kinase; Validated
Probab=22.29 E-value=4e+02 Score=25.52 Aligned_cols=70 Identities=6% Similarity=-0.033 Sum_probs=41.9
Q ss_pred CCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhH
Q 042934 6 NPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKL 85 (282)
Q Consensus 6 ~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~ 85 (282)
....|++.+|||... .+++ ++.-|-+.|.|.+-|++-+-.. +.+..+...++++.+ .+
T Consensus 132 ~r~tkIv~Tlg~pa~----------~~~e--------~i~~Li~aGmdvaRiN~SHg~~-e~~~~~i~~vR~a~~-~~-- 189 (493)
T PRK08187 132 ARRTRIMVTLPSEAA----------DDPD--------FVLRLAERGMDCARINCAHDDP-AAWQAMIGHLRQAER-AT-- 189 (493)
T ss_pred CCCceEEEECCCCcc----------CCHH--------HHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHHHH-Hc--
Confidence 346899999987642 1222 2333445699999999886442 444444444444444 43
Q ss_pred HHhhccCCCccEEEEEEecc
Q 042934 86 EAKNSSRQQSQLILTARFHY 105 (282)
Q Consensus 86 ~~~~~g~~~~~~~ls~a~~~ 105 (282)
+++..|-+.+++
T Consensus 190 --------g~~i~Il~DL~G 201 (493)
T PRK08187 190 --------GRRCKILMDLAG 201 (493)
T ss_pred --------CCCeEEEEeCCC
Confidence 345666666654
No 193
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=22.25 E-value=1.5e+02 Score=28.31 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=71.3
Q ss_pred ccCCCCeEEEEE--c-----C------CCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC-----c
Q 042934 4 KENPSITILLSI--G-----Q------GMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT-----S 65 (282)
Q Consensus 4 ~~~~~~kvl~si--G-----g------~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~-----~ 65 (282)
+...++|+++.+ | | |.+ ...-....-++..|..+-+-+-.+++.|+.|=--.-|+.... +
T Consensus 76 a~~l~lkvlitlivg~~hmgg~Nw~Ipwag--~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p 153 (587)
T COG3934 76 AGYLDLKVLITLIVGLKHMGGTNWRIPWAG--EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAP 153 (587)
T ss_pred cccCcceEEEEEeecccccCcceeEeecCC--CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCcccccc
Confidence 456789999774 2 3 221 223345667777776555555566667776544444653321 3
Q ss_pred hhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhccccEEEeeec
Q 042934 66 TDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVHAVTA 129 (282)
Q Consensus 66 ~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~vD~v~vm~y 129 (282)
....+|...++++.. -++.. .++..+++-=|..++. .+.....-.+|||-...-|
T Consensus 154 ~s~N~f~~w~~emy~-yiK~l-------dd~hlvsvGD~~sp~~-~~~pyN~r~~vDya~~hLY 208 (587)
T COG3934 154 ISVNNFWDWSGEMYA-YIKWL-------DDGHLVSVGDPASPWP-QYAPYNARFYVDYAANHLY 208 (587)
T ss_pred CChhHHHHHHHHHHH-Hhhcc-------CCCCeeecCCcCCccc-ccCCcccceeeccccchhh
Confidence 445789999999999 88866 5668888876665532 2222244457777766666
No 194
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=3.8e+02 Score=28.02 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=42.5
Q ss_pred cCCCCeEE-EEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHh
Q 042934 5 ENPSITIL-LSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 5 ~~~~~kvl-~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l 83 (282)
-.||.+++ +.||... +.+=+.-+.|++.++..++ +..|=|++.|-.+. ...+..++++.+|+ ..
T Consensus 333 vAPgaqIvSl~IGD~R----------LgsMETgtaltRA~~~v~e-~~vDiINmSyGE~a---~~pn~GRviEl~~e-~v 397 (1304)
T KOG1114|consen 333 VAPGAQIVSLKIGDGR----------LGSMETGTALTRAMIEVIE-HNVDIINMSYGEDA---HLPNSGRVIELLRE-LV 397 (1304)
T ss_pred CCCCCEEEEEEecCcc----------ccccccchHHHHHHHHHHH-hcCCEEEeccCccC---CCCCcchHHHHHHH-Hh
Confidence 36888887 6678653 2233445677777777776 68999999884332 23455666776766 55
Q ss_pred h
Q 042934 84 K 84 (282)
Q Consensus 84 ~ 84 (282)
.
T Consensus 398 n 398 (1304)
T KOG1114|consen 398 N 398 (1304)
T ss_pred h
Confidence 3
No 195
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=22.15 E-value=2.8e+02 Score=27.16 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChh
Q 042934 36 RKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLN 115 (282)
Q Consensus 36 r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~ 115 (282)
.+-|-.++..+++.-.+.-+-|=+-...+.++......+++..+. .+.+....- +....+-+-+.. +..-....
T Consensus 367 ~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~-~l~~~~~~~---~~~~~~g~mIE~--p~a~~~~d 440 (575)
T PRK11177 367 KEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQ-ELRDEGKAF---DESIEIGVMVET--PAAAVIAR 440 (575)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHH-HHHHhcccc---CCCcEEEEEEeC--HHHHHhHH
Confidence 456777777777664332222233333344555556666766666 554321111 122333333321 11224567
Q ss_pred hhhccccEEEeeeccccC
Q 042934 116 SRQRNLNWVHAVTASYYE 133 (282)
Q Consensus 116 ~l~~~vD~v~vm~yd~~~ 133 (282)
.|.+.+|++.+=+.|+..
T Consensus 441 ~i~~~vDf~sIGtnDL~q 458 (575)
T PRK11177 441 HLAKEVDFFSIGTNDLTQ 458 (575)
T ss_pred HHHhhCCEEEECcHHHHH
Confidence 888899999999999875
No 196
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=21.93 E-value=44 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.8
Q ss_pred HHHHHHHHhhCCCceEEEEeecCCCCCC
Q 042934 255 VRMKVAYAKEKKLRGYFVWRVDYDDHNW 282 (282)
Q Consensus 255 ~~~K~~~~~~~glgGv~~W~l~~Dd~~~ 282 (282)
-+++++++.+.|+-+|-+|+..|+-.+|
T Consensus 154 a~ac~~la~e~~l~~vdlws~~Q~~~dw 181 (245)
T KOG3035|consen 154 AKACANLAQEIGLYVVDLWSKMQESDDW 181 (245)
T ss_pred HHHHHHHHHHhCCeeeeHHhhhhhcccH
Confidence 3577889999999999999999998787
No 197
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=21.63 E-value=4e+02 Score=21.55 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCC---eEEEEeecCCCch-hHhhHHHHHHHHHH
Q 042934 40 IDCSIRIARLYGFQ---GLDFAWTAPNTST-DLFNIGLLFDEWRI 80 (282)
Q Consensus 40 ~~~i~~~l~~~~~D---Gidid~e~~~~~~-~~~~~~~fl~~lr~ 80 (282)
++..++.++.+++. -+-||+|...... -......|++++++
T Consensus 76 A~~f~~~~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~ 120 (192)
T cd06522 76 ARYFANTAKSLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKA 120 (192)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHH
Confidence 34445556777654 2568999765312 22344666666666
No 198
>PLN02363 phosphoribosylanthranilate isomerase
Probab=21.57 E-value=2.1e+02 Score=24.78 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCeEEEE--eecCCCc-hhHhhHHHHHHHHHH
Q 042934 41 DCSIRIARLYGFQGLDFA--WTAPNTS-TDLFNIGLLFDEWRI 80 (282)
Q Consensus 41 ~~i~~~l~~~~~DGidid--~e~~~~~-~~~~~~~~fl~~lr~ 80 (282)
+|+.+.++..+..|||+. .|..... .|.....+|++.+|.
T Consensus 211 eNV~~ai~~~~P~GVDVsSGVE~~pG~~KD~~KI~~fv~~vr~ 253 (256)
T PLN02363 211 ENVHEAVSLLKPTGVDVSSGICGPDGIRKDPSKISSFISAVKS 253 (256)
T ss_pred HHHHHHHHhcCCcEEEeCCcccCCCCcccCHHHHHHHHHHHHh
Confidence 467777777788899997 5643333 677889999999887
No 199
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=21.53 E-value=99 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.5
Q ss_pred hhhhCChHHHHHHHHHHHHHHHHcCCC
Q 042934 27 SSMVSNSSHRKSFIDCSIRIARLYGFQ 53 (282)
Q Consensus 27 ~~~~~~~~~r~~f~~~i~~~l~~~~~D 53 (282)
..+ .+++.|++|.+.=-.++.+||+.
T Consensus 6 ~~L-~~~~~r~~F~~D~~a~~~~~~Lt 31 (88)
T PF07746_consen 6 WSL-NDPENRERFLADPEAYLDEYGLT 31 (88)
T ss_dssp HGG-GSHHHHHHHHH-HHHHHHCCT--
T ss_pred HHH-cCHHHHHHHHHCHHHHHHHcCCC
Confidence 344 89999999999999999999874
No 200
>PRK03995 hypothetical protein; Provisional
Probab=21.49 E-value=2.2e+02 Score=24.80 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=42.5
Q ss_pred cCCCCeEEEEEcCCCCCCCccchhhhC-----------ChHHHHHHH-HHHHHHHHHc--CCCeEEEEeecCCCchhHhh
Q 042934 5 ENPSITILLSIGQGMDTNYSIYSSMVS-----------NSSHRKSFI-DCSIRIARLY--GFQGLDFAWTAPNTSTDLFN 70 (282)
Q Consensus 5 ~~~~~kvl~siGg~~~~~~~~~~~~~~-----------~~~~r~~f~-~~i~~~l~~~--~~DGidid~e~~~~~~~~~~ 70 (282)
.....++++.|||.-. ...|..++. +-..- .+- +.+...+.+. ++|.+-|||....+ .++..
T Consensus 177 ~~~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l~-~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~ 252 (267)
T PRK03995 177 EYEKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYALD-HLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRER 252 (267)
T ss_pred cccCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccchh-cCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHH
Confidence 3467789999999754 433333322 11110 011 1244445553 68999999987765 77777
Q ss_pred HHHHHHHHH
Q 042934 71 IGLLFDEWR 79 (282)
Q Consensus 71 ~~~fl~~lr 79 (282)
+..|++++-
T Consensus 253 i~~~le~~g 261 (267)
T PRK03995 253 IIEFLEELG 261 (267)
T ss_pred HHHHHHHCC
Confidence 888777653
No 201
>PF13117 Cag12: Cag pathogenicity island protein Cag12
Probab=21.41 E-value=3.2e+02 Score=20.48 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=33.1
Q ss_pred EeCceeeEEEE---eCCEEEEeCCHHHHHHHHHHHhhCCCceEEEEe
Q 042934 231 YNSTYEVNYCS---IEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWR 274 (282)
Q Consensus 231 ~D~~~~~~y~~---~~~~~i~ydd~~S~~~K~~~~~~~glgGv~~W~ 274 (282)
++++..+-|.+ ..+..|...|...+..=-+|.+++|..|+.-|.
T Consensus 66 ~~~~~~~~~yalAH~~~iIv~~~~~~~~~~~K~wL~~nGa~avIe~q 112 (113)
T PF13117_consen 66 IDPEQIVVFYALAHSAKIIVLTGDGNLFFQYKNWLRKNGATAVIEYQ 112 (113)
T ss_pred cCchhheEeeeeeccccEEEEcCCHHHHHHHHHHHHHcCCceeEEec
Confidence 44433344443 677888899999999888999999999998763
No 202
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=21.41 E-value=1.2e+02 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=29.2
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCC
Q 042934 30 VSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPN 63 (282)
Q Consensus 30 ~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~ 63 (282)
..+|+.|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 3688999999888888888999999999986564
No 203
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.39 E-value=2.7e+02 Score=22.67 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHh
Q 042934 40 IDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAAT 83 (282)
Q Consensus 40 ~~~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l 83 (282)
++.+.+++.+.++|||.|.-.. + ..+++++|. .+
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e-----~----~~~~~~l~~-~~ 95 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE-----S----PEYCAQLRA-RL 95 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC-----C----HHHHHHHHh-hc
Confidence 3667788899999999997431 1 346777887 65
No 204
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.33 E-value=5.1e+02 Score=21.94 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhc-cc
Q 042934 43 SIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQR-NL 121 (282)
Q Consensus 43 i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~-~v 121 (282)
.++.+.+.|.||+-+-=. | .+....+++.+|+ . | +...+.+.|.... -.+..+.+ ..
T Consensus 96 fi~~~~~aG~~giiipDl-~-----~ee~~~~~~~~~~-~--------g-----~~~i~~i~P~T~~--~~i~~i~~~~~ 153 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDL-P-----PEEAEEFREAAKE-Y--------G-----LDLIFLVAPTTPD--ERIKKIAELAS 153 (242)
T ss_pred HHHHHHHCCCcEEEECCC-C-----HHHHHHHHHHHHH-c--------C-----CcEEEEeCCCCCH--HHHHHHHhhCC
Confidence 344556678999988211 1 1234455555554 2 2 4444444433322 12344555 78
Q ss_pred cEEEeeec
Q 042934 122 NWVHAVTA 129 (282)
Q Consensus 122 D~v~vm~y 129 (282)
|++.+|+.
T Consensus 154 ~~vy~~s~ 161 (242)
T cd04724 154 GFIYYVSR 161 (242)
T ss_pred CCEEEEeC
Confidence 99988886
No 205
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=21.27 E-value=4.3e+02 Score=21.04 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHcCCCeEEEEeecCCC-chh--------HhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhh
Q 042934 48 RLYGFQGLDFAWTAPNT-STD--------LFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQ 118 (282)
Q Consensus 48 ~~~~~DGidid~e~~~~-~~~--------~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~ 118 (282)
....||=|-+++-+.+. .++ +.-+..|++..+. -|+. .| ...||++ -..++..+++..++
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~-~L~~----~G----~IhVTl~--~~~py~~W~i~~lA 140 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQ-LLKP----DG----EIHVTLK--DGQPYDSWNIEELA 140 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHH-hcCC----CC----EEEEEeC--CCCCCccccHHHHH
Confidence 34458888888777662 111 1233445555555 4432 23 2444444 33345667899999
Q ss_pred ccccEEEeeeccccC
Q 042934 119 RNLNWVHAVTASYYE 133 (282)
Q Consensus 119 ~~vD~v~vm~yd~~~ 133 (282)
+...++.+....+..
T Consensus 141 ~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 141 AEAGLVLVRKVPFDP 155 (166)
T ss_pred HhcCCEEEEEecCCH
Confidence 999999888887653
No 206
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=21.21 E-value=4.9e+02 Score=21.68 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=31.8
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCCchhH
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDL 68 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~~~~~ 68 (282)
||.+.| +.++..|--..+ ..+-+.+...... .=+++++++|.||+.|---.+...-|+
T Consensus 54 ~k~~~~-iP~ycMiRpR~G-------DFvYsd~Em~a~~-~Dv~llk~~GAdGfVFGaLt~dgsid~ 111 (255)
T KOG4013|consen 54 LKYKYP-IPLYCMIRPRAG-------DFVYSDDEMAANM-EDVELLKKAGADGFVFGALTSDGSIDR 111 (255)
T ss_pred hhcccc-cceEEEEecCCC-------CcccchHHHHHHH-HHHHHHHHcCCCceEEeecCCCCCcCH
Confidence 456666 777777722111 0122222222222 337899999999999875444433443
No 207
>PLN02334 ribulose-phosphate 3-epimerase
Probab=21.08 E-value=3.6e+02 Score=22.52 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCeEEEEeecCCCchhHhhHHHHHHHHHHHHhhHHHhhccCCCccEEEEEEeccCCCCCccChhhhhcc-
Q 042934 42 CSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRN- 120 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e~~~~~~~~~~~~~fl~~lr~~~l~~~~~~~g~~~~~~~ls~a~~~~~~~~~~~~~~l~~~- 120 (282)
..++.+.+.|.|||-+..|+ .. . ......++.++. . | +.+-+++.+.... -....+...
T Consensus 79 d~~~~~~~~gad~v~vH~~q-~~-~--d~~~~~~~~i~~-~--------g-----~~iGls~~~~t~~--~~~~~~~~~~ 138 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQ-AS-T--IHLHRLIQQIKS-A--------G-----MKAGVVLNPGTPV--EAVEPVVEKG 138 (229)
T ss_pred HHHHHHHHcCCCEEEEeecc-cc-c--hhHHHHHHHHHH-C--------C-----CeEEEEECCCCCH--HHHHHHHhcc
Confidence 44556677899999888885 11 1 233455555554 2 2 4566665432221 123445566
Q ss_pred -ccEEEeeecc
Q 042934 121 -LNWVHAVTAS 130 (282)
Q Consensus 121 -vD~v~vm~yd 130 (282)
+|+|.+|+..
T Consensus 139 ~~Dyi~~~~v~ 149 (229)
T PLN02334 139 LVDMVLVMSVE 149 (229)
T ss_pred CCCEEEEEEEe
Confidence 9999999864
No 208
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.90 E-value=2.9e+02 Score=25.43 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCeEEEEee--cCCCchhHhhHHHHHHHHHHHHhhHH
Q 042934 42 CSIRIARLYGFQGLDFAWT--APNTSTDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 42 ~i~~~l~~~~~DGidid~e--~~~~~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
..+.-+.+.|||||+|... +|.. .+...-..-++++++ .+++.
T Consensus 36 e~i~~la~~GfdgVE~~~~dl~P~~-~~~~e~~~~~~~lk~-~L~~~ 80 (382)
T TIGR02631 36 EAVHKLAELGAYGVTFHDDDLIPFG-APPQERDQIVRRFKK-ALDET 80 (382)
T ss_pred HHHHHHHHhCCCEEEecccccCCCC-CChhHHHHHHHHHHH-HHHHh
Confidence 3445578889999999733 2322 111112344677777 77654
No 209
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.89 E-value=5.3e+02 Score=22.02 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=27.8
Q ss_pred ccccCCCCeEEEEEcCCCCCCCccchhhhCChHHHHHHHHHHHHHHHHcC-CCeEEEEeec
Q 042934 2 LKKENPSITILLSIGQGMDTNYSIYSSMVSNSSHRKSFIDCSIRIARLYG-FQGLDFAWTA 61 (282)
Q Consensus 2 lk~~~~~~kvl~siGg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidid~e~ 61 (282)
|++..+++++++++=.... ...| -.+.+.|.++.. .+.+.+ .|-|||++..
T Consensus 68 l~~~~~~~PiI~T~R~~~e--GG~~---~~~~~~~~~ll~----~~~~~~~~d~vDiEl~~ 119 (253)
T PRK02412 68 IREKFAGKPLLFTFRTAKE--GGEI---ALSDEEYLALIK----AVIKSGLPDYIDVELFS 119 (253)
T ss_pred HHHhcCCCcEEEEECChhh--CCCC---CCCHHHHHHHHH----HHHhcCCCCEEEEeccC
Confidence 4455678999999932211 0111 123344544433 333446 7999998763
No 210
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=20.05 E-value=1.3e+02 Score=21.45 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.4
Q ss_pred hhCChHHHHHHHHHHHHHHHHc
Q 042934 29 MVSNSSHRKSFIDCSIRIARLY 50 (282)
Q Consensus 29 ~~~~~~~r~~f~~~i~~~l~~~ 50 (282)
.+.+...|..|+..|+++..+|
T Consensus 70 ~a~s~~Ek~~Fi~~L~k~~~~Y 91 (91)
T PF15277_consen 70 EASSAKEKNTFIRSLWKLYQKY 91 (91)
T ss_dssp EESSHHHHHHHHHHHHHHHHH-
T ss_pred EeCCHHHHHHHHHHHHHHhccC
Confidence 4667899999999999998876
No 211
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=20.01 E-value=2.8e+02 Score=28.04 Aligned_cols=54 Identities=11% Similarity=-0.015 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCCeEEEEeecCCC--chhHhhHHHHHHHHHHHHhhHH
Q 042934 32 NSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNT--STDLFNIGLLFDEWRIAATKLE 86 (282)
Q Consensus 32 ~~~~r~~f~~~i~~~l~~~~~DGidid~e~~~~--~~~~~~~~~fl~~lr~~~l~~~ 86 (282)
+|+...+|-+..-++|..-|+|||-+|-+.... ......-+++.+.... +|...
T Consensus 360 ~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~-ALe~S 415 (775)
T PLN02219 360 NPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQ-ALEAS 415 (775)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHH-HHHHH
Confidence 678889999999999999999999999765321 1222233566666666 55543
Done!