BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042938
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60
D V + V E PVV++SK+ C +++L +P V ELD++ GPQI++ L++L
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
Q TVP VFIG + +GG + L+ + EL PLL A A
Sbjct: 69 GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
+ + + PVV+FSK+ C C ++ L+ GA+ V ELD++ +G Q++ AL
Sbjct: 10 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
+ TVP VFIG + +GG + V+ H +NEL PLL A A
Sbjct: 70 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
+ + + PVV+FSK+ C C ++ L+ GA+ V ELD++ +G Q++ AL
Sbjct: 11 LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 70
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
+ TVP VFIG + +GG + V+ H +NEL PLL A A
Sbjct: 71 GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60
+ + + V E VVI+SK+ C C ++TL G P V ELDQ+ P GPQ+++ L++L
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
Q TVP VF+ + +GG + L+ + +L +L A
Sbjct: 70 GQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
++ + +++ VVIFSK+ C C + L N V ELD + G Q + AL ++
Sbjct: 25 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 84
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
+ TVP +F+ +GG LH + +L PL+
Sbjct: 85 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 118
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
++ + +++ VVIFSK+ C C + L N V ELD + G Q + AL ++
Sbjct: 39 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
+ TVP +F+ +GG LH + +L PL+
Sbjct: 99 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 132
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
++ + +++ VVIFSK+ C C + L N V ELD + G Q + AL ++
Sbjct: 17 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
+ TVP +F+ +GG LH + +L PL+
Sbjct: 77 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 110
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 7 MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVP 66
++ VVIFSKS C ++ L G V ELDQ+ +G +++ L ++ Q TVP
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 67 AVFIGQRLVGGPNQVMSLHVQNELGPLL 94
+F+ + VGG +Q + L LL
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLLQKLL 100
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 4 VTRMVNEKPVVIFSKSECCIC-FSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59
V ++ +K V + +K+ C C ++ TL + V ELD++ NG +I+ AL+++
Sbjct: 10 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 69
Query: 60 GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
Q TVP V+I + +GG + + +L +L +L
Sbjct: 70 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 4 VTRMVNEKPVVIFSKSECCIC-FSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59
V ++ +K V + +K+ C C ++ TL + V ELD++ NG +I+ AL+++
Sbjct: 30 VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 89
Query: 60 GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
Q TVP V+I + +GG + + +L +L +L
Sbjct: 90 SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6 RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
+ V+ V++FSK+ C C ++ ++ ELDQ+ NG I++ L TV
Sbjct: 13 KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV 72
Query: 66 PAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
P +F+ + +G V+ + +EL ++
Sbjct: 73 PQMFVRGKFIGDSQTVLKYYSNDELAGIV 101
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6 RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
+ V+ V++FSK+ C C ++ ++ ELDQ+ NG I++ L TV
Sbjct: 13 KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV 72
Query: 66 PAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
P +F+ + +G V+ + +EL ++
Sbjct: 73 PQMFVRGKFIGDSQTVLKYYSNDELAGIV 101
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6 RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
+ V+ V++FSK+ C C ++ ++ ELDQ+ NG I++ L TV
Sbjct: 13 KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV 72
Query: 66 PAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
P +F+ + +G V+ + +EL ++
Sbjct: 73 PQMFVRGKFIGDSQTVLKYYSNDELAGIV 101
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 4 VTRMVNEKPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQ 57
V ++ +K V + +K+ C +S TL F + V ELD++ NG +I+ AL+
Sbjct: 13 VKDLIGQKEVFVAAKTYCP--YSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 70
Query: 58 QLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
++ Q TVP V+I + +GG + + +L +L +L
Sbjct: 71 EISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI---PNGPQIERALQQLGCQPTVPAVF 69
VV+F K C C Q L+ + E I + +I+ LQQL TVP VF
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73
Query: 70 IGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
IG+ +GG + S+H + EL L + GA+
Sbjct: 74 IGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 12 PVVIFSKSECCICFSIQTLICG---FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV 68
P++IFSKS C + L+ F N + ELD+ +G +++ ++ + + TVP +
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL 74
Query: 69 FIGQRLVGGPNQVMSLHVQNEL 90
+ GG ++ LH Q +L
Sbjct: 75 LVNGVSRGGNEEIKKLHTQGKL 96
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 4 VTRMVNEKPVVIFSKS-----ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ 58
+ + PVV+F K +C + L+ G +P + + P++ +++
Sbjct: 9 IEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68
Query: 59 LGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
PT+P +++ + +GG + + S+ EL LL A A+
Sbjct: 69 FSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQAL 110
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6 RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGP---QIERALQQLGCQ 62
R+ N K V IF K C C + ++ F YE+ I ++ +Q+
Sbjct: 15 RLANNK-VTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG 73
Query: 63 PTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
TVP +F G+ +GG + ++ + + LG +L G +
Sbjct: 74 KTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP---NGPQIERALQQLGCQPTVPAVF 69
VV+F K C C Q ++ + E I + +I+ LQQL TVP VF
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVF 74
Query: 70 IGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
IG+ +GG + ++SL EL L + GA+
Sbjct: 75 IGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIP---NGPQIERALQQ 58
+ V + VV+F K C Q ++ + E I + +I+ LQQ
Sbjct: 3 EFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQ 62
Query: 59 LGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
L TVP VFIG+ +GG + ++SL EL L + GA+
Sbjct: 63 LTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGAL 104
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
V I++K C C + L+ G + EL N + E +++ G + TVP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGV--SFQELPIDGNAAKREEMIKRSG-RTTVPQIFIDA 59
Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
+ +GG + + +L + L PLL
Sbjct: 60 QHIGGYDDLYALDARGGLDPLL 81
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
V+I+++ C C + L+ GA E+D P++ +Q+ + T P +FIG
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAE--FNEIDASAT-PELRAEMQERSGRNTFPQIFIGS 64
Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
VGG + + +L + +L LL
Sbjct: 65 VHVGGCDDLYALEDEGKLDSLL 86
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 6 RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGP---QIERALQQLGCQ 62
R+ N K V IF K C + ++ F YE+ I ++ +Q+
Sbjct: 15 RLANNK-VTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG 73
Query: 63 PTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
TVP +F G+ +GG + ++ + + LG +L G +
Sbjct: 74 KTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 4 VTRMVNEKPVVIFSKSECCICFS-IQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59
V ++ E + + SK+ C C + + TL + V +L+ + G I+ AL ++
Sbjct: 18 VKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 77
Query: 60 GCQPTVPAVFIGQRLVGGPNQV 81
Q TVP ++I + +GG + +
Sbjct: 78 NGQRTVPNIYINGKHIGGNDDL 99
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 7 MVNEKPVVIF---SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQP 63
+ N+ V++F +K E FS Q L + YE I ++ + L+ P
Sbjct: 13 LTNKASVMLFMKGNKQEAKCGFSKQILEI-LNSTGVEYETFDILEDEEVRQGLKAYSNWP 71
Query: 64 TVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
T P +++ LVGG + V L EL P+L
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENGELLPIL 102
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
V I++K C + L+ G + EL N + E +++ G + TVP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGV--SFQELPIDGNAAKREEMIKRSG-RTTVPQIFIDA 59
Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
+ +GG + + +L + L PLL
Sbjct: 60 QHIGGYDDLYALDARGGLDPLL 81
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 7 MVNEKPVVIF---SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQP 63
+ N+ V++F +K E FS Q L + YE I ++ + L+ P
Sbjct: 11 LTNKASVMLFMKGNKQEAKCGFSKQILEI-LNSTGVEYETFDILEDEEVRQGLKTFSNWP 69
Query: 64 TVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
T P +++ LVGG + V L EL P+L
Sbjct: 70 TYPQLYVRGDLVGGLDIVKELKDNGELLPIL 100
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 4 VTRMVNEKPVVIFSKSECCICFS-IQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59
V ++ E + + SK+ C + + TL + V +L+ + G I+ AL ++
Sbjct: 10 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 69
Query: 60 GCQPTVPAVFIGQRLVGGPNQV 81
Q TVP ++I + +GG + +
Sbjct: 70 NGQRTVPNIYINGKHIGGNDDL 91
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPT--------VYELDQIPNGPQI 52
++ + R + E P++++ K S + CGF A + I P I
Sbjct: 5 IEKIQRQIAENPILLYMKG------SPKLPSCGFSAQAVQALAACGERFAYVDILQNPDI 58
Query: 53 ERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIW 101
L + PT P +++ LVGG + V+ ++ + EL L+ A +
Sbjct: 59 RAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 107
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPT--------VYELDQIPNGPQI 52
++ + R + E P++++ K S + CGF A + I P I
Sbjct: 25 IEKIQRQIAENPILLYMKG------SPKLPSCGFSAQAVQALAACGERFAYVDILQNPDI 78
Query: 53 ERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIW 101
L + PT P +++ LVGG + V+ ++ + EL L+ A +
Sbjct: 79 RAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70
K ++++++ C C + L+ G T + ++RA + T P +FI
Sbjct: 6 KEIILYTRPNCPYCKRARDLLDKKGVKYTDIDASTSLRQEMVQRA----NGRNTFPQIFI 61
Query: 71 GQRLVGGPNQVMSLHVQNELGPLL 94
G VGG + + +L + +L LL
Sbjct: 62 GDYHVGGCDDLYALENKGKLDSLL 85
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 2 DMVTRMVNEKPVVIFSKS-----ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERAL 56
+ + +V + VV+F K +C ++ ++ G Y + + P++ + +
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRD--YAAYNVLDDPELRQGI 68
Query: 57 QQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAG 98
+ PT+P V++ VGG + ++ +H +L L + G
Sbjct: 69 KDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 40 VYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG 77
V +L+ + G I+ AL ++ Q TVP ++I + +GG
Sbjct: 294 VLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGG 331
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTV---------YELDQIPNGPQI 52
D + ++VN + VV+F K + +CGF +N V +E I +
Sbjct: 9 DTLEKLVNSEKVVLFMKG------TRDFPMCGF-SNTVVQILKNLNVPFEDVNILENEML 61
Query: 53 ERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRA 97
+ L++ PT P ++IG GG + + EL + +A
Sbjct: 62 RQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKA 106
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 4 VTRMVNEKPVVIFSK---SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
+ ++ + P ++F K E FS Q + N D I + ++ + L+
Sbjct: 9 LKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD-IFSDEEVRQGLKAYS 67
Query: 61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAG 98
PT P +++ L+GG + + L EL + +A
Sbjct: 68 SWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAA 105
>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
Length = 627
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 25 FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
++++ L G A+P + ELD PN +E+AL+ G
Sbjct: 58 YAVRVLFPGIEAHPVLKELDTPPN---VEKALRLFG 90
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 62 QPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
+ ++P +FI + +GG + + +L +L PLL
Sbjct: 65 KRSLPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 33 GFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
GFG + TV LD PNG + Q GCQ +
Sbjct: 215 GFGMSQTVGHLDFFPNGGK-----QMPGCQKNI 242
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIE-RALQQLGCQPTVPAV 68
++ + IF+K C C + L+ G + ++I G +++ + + TVP V
Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKGLS-----FEEIILGHDATIVSVRAVSGRTTVPQV 223
Query: 69 FIGQRLVGGPNQV 81
FIG + +GG + +
Sbjct: 224 FIGGKHIGGSDDL 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,112,807
Number of Sequences: 62578
Number of extensions: 107857
Number of successful extensions: 267
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 40
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)