Query 042938
Match_columns 106
No_of_seqs 155 out of 1091
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:05:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 3.7E-35 8.1E-40 179.7 11.1 98 4-101 1-98 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 1.9E-33 4.2E-38 174.4 12.3 100 2-101 4-106 (108)
3 KOG1752 Glutaredoxin and relat 100.0 1.5E-33 3.2E-38 173.2 11.6 101 1-101 4-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 1.4E-32 3.1E-37 171.7 10.8 97 2-101 6-107 (115)
5 TIGR00365 monothiol glutaredox 100.0 6.5E-30 1.4E-34 155.9 9.3 91 1-94 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 100.0 1.1E-27 2.4E-32 144.2 10.0 85 4-91 1-90 (90)
7 PRK10638 glutaredoxin 3; Provi 99.9 3E-26 6.4E-31 135.9 9.2 82 11-95 2-83 (83)
8 PTZ00062 glutaredoxin; Provisi 99.9 3.3E-26 7.1E-31 155.5 10.0 92 2-96 104-200 (204)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 9.8E-26 2.1E-30 132.2 7.7 79 13-94 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 3.7E-25 7.9E-30 130.4 9.3 82 13-94 1-84 (84)
11 COG0695 GrxC Glutaredoxin and 99.9 1.1E-24 2.5E-29 128.5 9.6 78 12-90 2-79 (80)
12 cd03419 GRX_GRXh_1_2_like Glut 99.9 1.9E-24 4E-29 127.0 9.4 81 12-92 1-81 (82)
13 COG0278 Glutaredoxin-related p 99.9 1.1E-24 2.3E-29 131.1 8.3 95 1-98 5-105 (105)
14 cd03031 GRX_GRX_like Glutaredo 99.9 2.9E-24 6.4E-29 139.4 9.1 84 12-98 1-94 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.7E-23 3.7E-28 121.2 9.7 74 12-88 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.9 3.7E-23 8E-28 119.7 7.5 72 11-85 1-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.9 7.9E-23 1.7E-27 120.2 8.2 74 7-84 4-77 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 1.7E-22 3.7E-27 116.6 8.5 70 12-85 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 3.6E-22 7.8E-27 147.8 10.0 90 10-101 1-95 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.9 9.9E-22 2.2E-26 117.3 8.4 73 13-88 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.9 2E-21 4.3E-26 115.5 8.0 73 12-87 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 2E-20 4.3E-25 106.3 7.9 71 12-85 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.8 6.4E-20 1.4E-24 124.7 8.7 92 3-97 131-227 (227)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.8 1.9E-19 4.1E-24 108.6 8.0 80 13-95 2-91 (92)
25 PF00462 Glutaredoxin: Glutare 99.8 1.9E-19 4.1E-24 100.4 6.5 60 13-75 1-60 (60)
26 PRK10329 glutaredoxin-like pro 99.8 5.4E-18 1.2E-22 100.2 7.3 64 12-79 2-65 (81)
27 TIGR02194 GlrX_NrdH Glutaredox 99.8 3.5E-18 7.7E-23 98.6 6.3 64 13-80 1-65 (72)
28 TIGR02196 GlrX_YruB Glutaredox 99.6 3.7E-15 8E-20 84.8 7.0 65 12-79 1-65 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.6 1.3E-14 2.8E-19 82.5 7.5 66 12-80 1-66 (73)
30 KOG2824 Glutaredoxin-related p 99.6 4.2E-15 9E-20 103.8 6.4 89 10-98 130-225 (281)
31 TIGR02200 GlrX_actino Glutared 99.5 3.5E-14 7.6E-19 81.9 6.9 65 12-79 1-67 (77)
32 cd02973 TRX_GRX_like Thioredox 99.5 3E-13 6.6E-18 76.4 6.4 58 12-76 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.4 2.1E-12 4.6E-17 78.7 7.7 81 12-95 2-97 (99)
34 cd03041 GST_N_2GST_N GST_N fam 99.3 5.7E-11 1.2E-15 69.1 8.3 70 13-85 2-73 (77)
35 cd00570 GST_N_family Glutathio 99.3 1E-10 2.2E-15 65.1 8.5 68 14-84 2-69 (71)
36 cd03037 GST_N_GRX2 GST_N famil 99.2 1.3E-10 2.9E-15 66.2 7.5 67 14-85 2-69 (71)
37 cd03040 GST_N_mPGES2 GST_N fam 99.2 4.6E-10 1E-14 64.9 8.7 67 12-84 1-71 (77)
38 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 1.4E-10 3.1E-15 69.4 6.1 68 2-76 5-77 (89)
39 cd03059 GST_N_SspA GST_N famil 99.1 1.7E-09 3.6E-14 61.7 8.9 68 13-84 1-68 (73)
40 cd03060 GST_N_Omega_like GST_N 99.1 1.9E-09 4E-14 61.5 8.7 66 14-83 2-68 (71)
41 TIGR00411 redox_disulf_1 small 99.0 2.5E-09 5.4E-14 62.1 8.1 57 12-73 2-62 (82)
42 cd03055 GST_N_Omega GST_N fami 99.0 6.1E-09 1.3E-13 62.1 9.2 71 10-84 16-87 (89)
43 TIGR01295 PedC_BrcD bacterioci 99.0 6.5E-09 1.4E-13 65.6 8.9 76 3-78 15-106 (122)
44 cd03051 GST_N_GTT2_like GST_N 99.0 4.1E-09 8.8E-14 59.9 7.2 70 13-83 1-71 (74)
45 cd03045 GST_N_Delta_Epsilon GS 99.0 1.3E-08 2.7E-13 58.2 8.8 71 13-84 1-71 (74)
46 TIGR00412 redox_disulf_2 small 99.0 2.2E-09 4.7E-14 62.4 5.5 54 13-75 3-60 (76)
47 cd02977 ArsC_family Arsenate R 99.0 2.4E-09 5.1E-14 65.7 5.8 48 13-60 1-49 (105)
48 cd03036 ArsC_like Arsenate Red 98.9 2.2E-09 4.8E-14 66.7 5.5 47 13-59 1-48 (111)
49 PRK01655 spxA transcriptional 98.9 8.1E-09 1.7E-13 66.0 8.2 47 13-59 2-49 (131)
50 PF13417 GST_N_3: Glutathione 98.9 1.6E-08 3.4E-13 58.3 7.8 67 15-85 1-67 (75)
51 cd03056 GST_N_4 GST_N family, 98.9 3.3E-08 7.1E-13 56.1 8.6 70 13-83 1-70 (73)
52 PHA02125 thioredoxin-like prot 98.9 1.4E-08 3E-13 58.7 6.9 55 13-75 2-56 (75)
53 cd03032 ArsC_Spx Arsenate Redu 98.8 4.1E-08 8.9E-13 61.3 8.4 47 13-59 2-49 (115)
54 PRK13344 spxA transcriptional 98.8 5.3E-08 1.1E-12 62.3 8.5 47 13-59 2-49 (132)
55 PF05768 DUF836: Glutaredoxin- 98.8 4.9E-08 1.1E-12 57.3 7.7 53 12-72 1-57 (81)
56 TIGR01617 arsC_related transcr 98.8 1.6E-08 3.5E-13 63.3 5.4 48 13-60 1-49 (117)
57 cd03035 ArsC_Yffb Arsenate Red 98.8 5.1E-08 1.1E-12 60.1 7.2 48 13-60 1-49 (105)
58 PRK12559 transcriptional regul 98.8 8E-08 1.7E-12 61.4 8.3 46 13-58 2-48 (131)
59 cd02975 PfPDO_like_N Pyrococcu 98.7 5.1E-08 1.1E-12 60.6 6.2 59 5-70 17-81 (113)
60 cd03058 GST_N_Tau GST_N family 98.7 3.6E-07 7.7E-12 52.3 8.9 68 13-84 1-69 (74)
61 cd03053 GST_N_Phi GST_N family 98.7 3.9E-07 8.4E-12 52.2 8.5 72 13-85 2-73 (76)
62 cd03054 GST_N_Metaxin GST_N fa 98.7 2.8E-07 6.1E-12 52.5 7.7 56 19-85 14-69 (72)
63 cd03061 GST_N_CLIC GST_N famil 98.6 3.3E-07 7.1E-12 55.2 8.0 63 19-85 20-82 (91)
64 cd03052 GST_N_GDAP1 GST_N fami 98.6 3.8E-07 8.3E-12 52.4 7.8 70 13-83 1-70 (73)
65 PHA02278 thioredoxin-like prot 98.6 5.4E-07 1.2E-11 55.3 8.5 71 3-76 6-86 (103)
66 cd03033 ArsC_15kD Arsenate Red 98.6 1.7E-07 3.6E-12 58.5 6.1 48 12-59 1-49 (113)
67 cd03049 GST_N_3 GST_N family, 98.6 7.5E-07 1.6E-11 50.7 8.1 67 13-83 1-70 (73)
68 cd02954 DIM1 Dim1 family; Dim1 98.6 4.5E-07 9.8E-12 56.7 7.6 67 3-76 4-82 (114)
69 TIGR03140 AhpF alkyl hydropero 98.6 4.8E-08 1E-12 74.5 3.7 67 3-76 111-182 (515)
70 PRK15317 alkyl hydroperoxide r 98.6 5.2E-08 1.1E-12 74.3 3.9 67 3-76 110-181 (517)
71 cd02953 DsbDgamma DsbD gamma f 98.6 6.7E-07 1.5E-11 54.2 7.7 64 3-69 3-77 (104)
72 PF13192 Thioredoxin_3: Thiore 98.5 1.7E-07 3.7E-12 54.3 4.0 54 12-74 2-59 (76)
73 TIGR02187 GlrX_arch Glutaredox 98.5 3.7E-07 7.9E-12 62.5 6.2 54 12-72 136-194 (215)
74 cd03076 GST_N_Pi GST_N family, 98.5 2.3E-06 5.1E-11 48.9 8.6 69 12-84 1-69 (73)
75 cd03042 GST_N_Zeta GST_N famil 98.5 1.7E-06 3.6E-11 49.0 7.4 70 13-83 1-70 (73)
76 KOG4023 Uncharacterized conser 98.5 3E-07 6.6E-12 55.6 4.3 86 12-97 3-99 (108)
77 cd02989 Phd_like_TxnDC9 Phosdu 98.4 2.2E-06 4.7E-11 53.3 7.8 68 3-77 14-90 (113)
78 cd02947 TRX_family TRX family; 98.4 2.6E-06 5.6E-11 49.2 7.6 56 13-75 14-76 (93)
79 PF13409 GST_N_2: Glutathione 98.4 1E-06 2.2E-11 50.2 5.6 67 20-86 1-68 (70)
80 cd03080 GST_N_Metaxin_like GST 98.4 3.9E-06 8.4E-11 48.2 7.9 62 13-85 2-70 (75)
81 TIGR03143 AhpF_homolog putativ 98.4 6.2E-07 1.3E-11 69.1 5.6 65 3-74 470-539 (555)
82 cd02985 TRX_CDSP32 TRX family, 98.4 3.2E-06 7E-11 51.4 7.5 70 2-75 4-84 (103)
83 cd03039 GST_N_Sigma_like GST_N 98.4 3.3E-06 7.2E-11 47.9 7.1 69 13-84 1-69 (72)
84 cd03048 GST_N_Ure2p_like GST_N 98.4 9.1E-06 2E-10 47.1 9.1 68 13-84 2-74 (81)
85 cd03038 GST_N_etherase_LigE GS 98.4 2.6E-06 5.6E-11 49.9 6.7 65 19-85 14-79 (84)
86 COG3118 Thioredoxin domain-con 98.4 1.2E-06 2.6E-11 62.5 5.9 65 9-80 42-115 (304)
87 TIGR02182 GRXB Glutaredoxin, G 98.4 3.2E-06 6.8E-11 57.5 7.8 68 14-86 1-69 (209)
88 cd03044 GST_N_EF1Bgamma GST_N 98.3 6.3E-06 1.4E-10 47.3 7.8 68 14-83 2-70 (75)
89 KOG3029 Glutathione S-transfer 98.3 2.3E-06 5.1E-11 60.9 7.0 68 12-85 90-157 (370)
90 PRK09381 trxA thioredoxin; Pro 98.3 2.6E-06 5.6E-11 52.0 6.4 59 13-78 25-91 (109)
91 PRK10387 glutaredoxin 2; Provi 98.3 4.1E-06 8.8E-11 56.5 7.8 69 13-86 1-70 (210)
92 PRK09481 sspA stringent starva 98.3 8.5E-06 1.8E-10 55.3 9.2 70 10-83 8-77 (211)
93 cd02957 Phd_like Phosducin (Ph 98.3 8.9E-06 1.9E-10 50.2 8.4 64 13-84 28-98 (113)
94 cd01659 TRX_superfamily Thiore 98.3 2.2E-06 4.8E-11 45.5 5.0 56 13-72 1-61 (69)
95 cd02994 PDI_a_TMX PDIa family, 98.3 3.1E-06 6.8E-11 50.9 6.0 64 3-73 10-82 (101)
96 KOG0910 Thioredoxin-like prote 98.3 1.5E-06 3.3E-11 56.5 4.6 59 10-75 61-128 (150)
97 PTZ00051 thioredoxin; Provisio 98.3 5.2E-06 1.1E-10 49.5 6.7 68 3-77 10-86 (98)
98 COG1393 ArsC Arsenate reductas 98.3 3.7E-06 8E-11 52.8 6.1 49 12-60 2-51 (117)
99 PRK10026 arsenate reductase; P 98.3 3.4E-06 7.3E-11 54.6 6.1 50 11-60 2-52 (141)
100 PF00085 Thioredoxin: Thioredo 98.3 3.4E-06 7.3E-11 50.3 5.7 68 4-76 9-85 (103)
101 cd02949 TRX_NTR TRX domain, no 98.3 3.7E-06 8.1E-11 50.5 5.7 57 13-76 17-81 (97)
102 COG4545 Glutaredoxin-related p 98.2 4.5E-06 9.8E-11 48.2 5.5 66 13-81 4-81 (85)
103 TIGR00014 arsC arsenate reduct 98.2 3.7E-06 8E-11 52.4 5.6 48 13-60 1-49 (114)
104 PRK10853 putative reductase; P 98.2 3.9E-06 8.5E-11 52.7 5.7 48 13-60 2-50 (118)
105 cd03050 GST_N_Theta GST_N fami 98.2 1.9E-05 4.2E-10 45.2 8.3 71 13-84 1-71 (76)
106 TIGR01616 nitro_assoc nitrogen 98.2 4.9E-06 1.1E-10 52.9 6.1 47 12-58 2-49 (126)
107 KOG0907 Thioredoxin [Posttrans 98.2 6.9E-06 1.5E-10 50.7 6.5 60 13-79 25-95 (106)
108 cd03034 ArsC_ArsC Arsenate Red 98.2 5.4E-06 1.2E-10 51.5 5.6 48 13-60 1-49 (112)
109 TIGR02187 GlrX_arch Glutaredox 98.2 1E-05 2.2E-10 55.4 7.4 65 6-75 16-90 (215)
110 cd02948 TRX_NDPK TRX domain, T 98.2 1.5E-05 3.3E-10 48.3 7.1 64 4-75 10-84 (102)
111 cd02959 ERp19 Endoplasmic reti 98.2 1.5E-05 3.2E-10 49.9 7.1 69 4-76 12-91 (117)
112 TIGR01068 thioredoxin thioredo 98.2 9.9E-06 2.1E-10 48.0 6.2 57 13-76 18-82 (101)
113 cd02986 DLP Dim1 family, Dim1- 98.2 1.2E-05 2.6E-10 50.2 6.6 66 3-75 4-81 (114)
114 cd02963 TRX_DnaJ TRX domain, D 98.1 9.3E-06 2E-10 50.1 5.7 57 13-76 28-93 (111)
115 cd03047 GST_N_2 GST_N family, 98.1 3.9E-05 8.4E-10 43.6 7.9 69 14-83 2-70 (73)
116 KOG0406 Glutathione S-transfer 98.1 2.8E-05 6E-10 54.0 8.4 71 11-84 8-78 (231)
117 cd02962 TMX2 TMX2 family; comp 98.1 1.6E-05 3.5E-10 52.0 6.9 58 13-76 51-122 (152)
118 cd02996 PDI_a_ERp44 PDIa famil 98.1 1.1E-05 2.4E-10 49.2 5.9 63 4-73 11-89 (108)
119 PRK10996 thioredoxin 2; Provis 98.1 1.7E-05 3.7E-10 50.9 6.7 68 4-76 45-120 (139)
120 cd03003 PDI_a_ERdj5_N PDIa fam 98.1 1.4E-05 3E-10 48.1 6.0 64 4-74 11-84 (101)
121 cd02951 SoxW SoxW family; SoxW 98.1 2.6E-05 5.6E-10 48.7 7.2 29 3-31 5-36 (125)
122 cd02987 Phd_like_Phd Phosducin 98.1 1.6E-05 3.4E-10 53.1 6.3 78 13-98 87-175 (175)
123 TIGR00862 O-ClC intracellular 98.1 6.6E-05 1.4E-09 52.4 9.4 64 19-86 17-80 (236)
124 cd03057 GST_N_Beta GST_N famil 98.0 5.9E-05 1.3E-09 43.2 7.6 69 14-84 2-71 (77)
125 cd02984 TRX_PICOT TRX domain, 98.0 3.9E-05 8.4E-10 45.5 6.8 68 3-75 4-81 (97)
126 cd02965 HyaE HyaE family; HyaE 98.0 2.4E-05 5.1E-10 48.7 6.0 60 12-78 30-99 (111)
127 cd03043 GST_N_1 GST_N family, 98.0 0.00011 2.3E-09 42.0 7.9 64 18-83 7-70 (73)
128 PLN00410 U5 snRNP protein, DIM 98.0 1.5E-05 3.2E-10 51.7 4.6 65 3-73 13-89 (142)
129 cd02999 PDI_a_ERp44_like PDIa 98.0 4E-05 8.6E-10 46.5 6.3 53 13-69 22-77 (100)
130 cd03046 GST_N_GTT1_like GST_N 98.0 0.00018 4E-09 40.8 8.6 70 14-85 2-71 (76)
131 cd03004 PDI_a_ERdj5_C PDIa fam 97.9 3.8E-05 8.1E-10 46.3 5.9 53 13-72 23-83 (104)
132 PRK15113 glutathione S-transfe 97.9 0.00014 3.1E-09 49.4 9.3 72 11-83 4-77 (214)
133 cd03005 PDI_a_ERp46 PDIa famil 97.9 3.7E-05 8.1E-10 45.9 5.6 67 4-75 10-86 (102)
134 cd03002 PDI_a_MPD1_like PDI fa 97.9 8.3E-05 1.8E-09 45.0 7.2 52 13-69 22-79 (109)
135 cd02956 ybbN ybbN protein fami 97.9 0.00011 2.4E-09 43.6 7.5 58 13-75 16-79 (96)
136 PF13098 Thioredoxin_2: Thiore 97.9 5.1E-05 1.1E-09 46.2 6.0 21 12-32 8-28 (112)
137 cd02952 TRP14_like Human TRX-r 97.9 4.4E-05 9.5E-10 48.1 5.6 56 13-69 25-95 (119)
138 PLN02473 glutathione S-transfe 97.9 0.00014 3E-09 49.2 8.4 69 13-84 3-73 (214)
139 cd02993 PDI_a_APS_reductase PD 97.9 8.1E-05 1.7E-09 45.6 6.5 52 13-69 25-83 (109)
140 cd02988 Phd_like_VIAF Phosduci 97.9 8.1E-05 1.7E-09 50.4 6.9 76 13-98 106-192 (192)
141 cd03000 PDI_a_TMX3 PDIa family 97.9 4.3E-05 9.3E-10 46.3 5.1 30 4-33 9-39 (104)
142 cd02950 TxlA TRX-like protein 97.8 0.00016 3.5E-09 46.5 7.6 67 4-75 13-90 (142)
143 PF13728 TraF: F plasmid trans 97.8 9.2E-05 2E-09 51.0 6.7 67 3-70 114-189 (215)
144 cd03065 PDI_b_Calsequestrin_N 97.8 0.00011 2.5E-09 46.2 6.4 66 4-76 19-101 (120)
145 cd02998 PDI_a_ERp38 PDIa famil 97.8 0.0001 2.2E-09 44.0 5.7 54 13-70 22-81 (105)
146 cd03006 PDI_a_EFP1_N PDIa fami 97.8 6.8E-05 1.5E-09 46.7 4.9 60 8-73 26-95 (113)
147 PLN02378 glutathione S-transfe 97.8 0.00025 5.4E-09 48.3 8.1 62 19-84 18-79 (213)
148 cd03001 PDI_a_P5 PDIa family, 97.8 8.4E-05 1.8E-09 44.4 5.2 50 13-69 22-77 (103)
149 cd02997 PDI_a_PDIR PDIa family 97.8 8E-05 1.7E-09 44.5 5.0 68 4-75 10-88 (104)
150 cd02961 PDI_a_family Protein D 97.8 7.6E-05 1.7E-09 43.8 4.9 61 4-69 8-76 (101)
151 TIGR01262 maiA maleylacetoacet 97.7 0.00013 2.8E-09 49.1 6.5 71 15-85 2-72 (210)
152 TIGR01126 pdi_dom protein disu 97.7 6E-05 1.3E-09 44.8 4.3 59 4-69 6-74 (102)
153 PRK10877 protein disulfide iso 97.7 0.00021 4.6E-09 49.7 7.5 23 12-34 110-132 (232)
154 TIGR02740 TraF-like TraF-like 97.7 0.00018 3.8E-09 51.2 7.1 66 4-70 161-235 (271)
155 PRK13728 conjugal transfer pro 97.7 0.00021 4.5E-09 48.1 7.0 35 12-46 72-110 (181)
156 cd02955 SSP411 TRX domain, SSP 97.7 0.00048 1E-08 43.6 8.2 76 3-78 7-97 (124)
157 PF03960 ArsC: ArsC family; I 97.7 0.00013 2.8E-09 45.0 5.0 45 16-60 1-46 (110)
158 PLN02817 glutathione dehydroge 97.7 0.00046 1E-08 48.9 8.4 62 19-84 71-132 (265)
159 PF14595 Thioredoxin_9: Thiore 97.6 1E-05 2.2E-10 51.6 -0.5 63 4-70 36-103 (129)
160 cd02992 PDI_a_QSOX PDIa family 97.6 0.00039 8.4E-09 43.1 6.3 63 4-69 11-83 (114)
161 PF07315 DUF1462: Protein of u 97.5 0.0011 2.5E-08 39.5 7.3 72 14-85 1-89 (93)
162 COG2999 GrxB Glutaredoxin 2 [P 97.5 0.00025 5.3E-09 47.6 5.0 67 14-85 2-69 (215)
163 COG0625 Gst Glutathione S-tran 97.5 0.0006 1.3E-08 46.1 6.9 69 14-85 2-72 (211)
164 PTZ00062 glutaredoxin; Provisi 97.5 0.00053 1.2E-08 46.9 6.6 63 3-78 8-78 (204)
165 PTZ00443 Thioredoxin domain-co 97.5 0.00034 7.4E-09 48.5 5.5 58 13-75 56-119 (224)
166 TIGR02738 TrbB type-F conjugat 97.5 0.00074 1.6E-08 44.2 6.9 38 9-46 50-91 (153)
167 PRK13703 conjugal pilus assemb 97.5 0.00065 1.4E-08 47.8 6.9 67 3-70 137-212 (248)
168 TIGR02739 TraF type-F conjugat 97.5 0.00081 1.8E-08 47.5 7.3 67 3-70 144-219 (256)
169 PF13899 Thioredoxin_7: Thiore 97.4 0.00039 8.4E-09 40.5 4.8 61 4-70 10-79 (82)
170 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.0011 2.5E-08 44.5 7.7 23 11-33 79-101 (197)
171 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.00026 5.7E-09 42.2 4.1 22 13-34 22-43 (104)
172 PRK10357 putative glutathione 97.4 0.0011 2.3E-08 44.4 7.3 66 14-83 2-68 (202)
173 cd03077 GST_N_Alpha GST_N fami 97.4 0.0016 3.4E-08 37.7 6.8 69 13-83 2-70 (79)
174 PF06764 DUF1223: Protein of u 97.3 0.00059 1.3E-08 46.7 4.7 67 13-79 2-86 (202)
175 PLN02395 glutathione S-transfe 97.3 0.0029 6.2E-08 42.7 8.0 69 13-85 3-73 (215)
176 cd02972 DsbA_family DsbA famil 97.2 0.0017 3.7E-08 37.6 6.0 34 13-46 1-40 (98)
177 PF13905 Thioredoxin_8: Thiore 97.2 0.0028 6E-08 37.4 6.9 47 13-59 5-57 (95)
178 PRK15412 thiol:disulfide inter 97.2 0.0017 3.6E-08 43.5 6.4 32 13-44 72-106 (185)
179 COG4837 Uncharacterized protei 97.2 0.0014 3E-08 39.4 5.3 76 9-84 3-95 (106)
180 KOG1422 Intracellular Cl- chan 97.2 0.0028 6.1E-08 43.5 7.4 63 20-86 20-82 (221)
181 cd03008 TryX_like_RdCVF Trypar 97.2 0.0018 3.9E-08 42.1 6.3 47 13-59 29-87 (146)
182 cd03078 GST_N_Metaxin1_like GS 97.2 0.004 8.6E-08 35.7 6.9 57 19-86 14-70 (73)
183 cd02964 TryX_like_family Trypa 97.1 0.0029 6.3E-08 39.8 6.6 21 13-33 21-41 (132)
184 cd02967 mauD Methylamine utili 97.1 0.0017 3.6E-08 39.5 5.3 55 13-69 25-83 (114)
185 PRK13972 GSH-dependent disulfi 97.1 0.0062 1.3E-07 41.3 8.3 56 13-70 2-57 (215)
186 cd03010 TlpA_like_DsbE TlpA-li 97.1 0.0029 6.4E-08 39.3 6.1 22 13-34 29-50 (127)
187 TIGR00424 APS_reduc 5'-adenyly 97.1 0.0022 4.8E-08 48.9 6.4 56 13-73 375-439 (463)
188 PRK00293 dipZ thiol:disulfide 97.1 0.0044 9.6E-08 48.3 8.2 59 13-74 478-547 (571)
189 TIGR00385 dsbE periplasmic pro 97.0 0.0031 6.6E-08 41.7 6.3 22 13-34 67-88 (173)
190 cd03009 TryX_like_TryX_NRX Try 97.0 0.0073 1.6E-07 37.7 7.3 21 13-33 22-42 (131)
191 KOG0868 Glutathione S-transfer 96.9 0.0031 6.8E-08 42.5 5.7 68 16-85 11-78 (217)
192 PTZ00102 disulphide isomerase; 96.9 0.0029 6.4E-08 47.5 6.1 65 4-73 42-117 (477)
193 cd02982 PDI_b'_family Protein 96.9 0.0017 3.8E-08 38.7 4.1 53 12-70 15-74 (103)
194 cd03079 GST_N_Metaxin2 GST_N f 96.9 0.0094 2E-07 34.4 6.9 56 19-84 15-70 (74)
195 PRK11752 putative S-transferas 96.9 0.01 2.2E-07 41.8 8.3 73 9-83 41-123 (264)
196 PF02798 GST_N: Glutathione S- 96.8 0.026 5.6E-07 32.2 8.3 68 13-83 3-72 (76)
197 cd02960 AGR Anterior Gradient 96.8 0.0042 9E-08 39.7 5.3 27 5-31 17-45 (130)
198 TIGR02661 MauD methylamine deh 96.8 0.014 3.1E-07 39.2 8.1 30 13-42 78-111 (189)
199 TIGR01130 ER_PDI_fam protein d 96.8 0.0088 1.9E-07 44.5 7.6 67 3-74 10-87 (462)
200 PLN02309 5'-adenylylsulfate re 96.7 0.0068 1.5E-07 46.2 6.6 54 13-72 369-432 (457)
201 cd03075 GST_N_Mu GST_N family, 96.7 0.033 7.1E-07 32.3 8.1 70 15-84 3-77 (82)
202 KOG0908 Thioredoxin-like prote 96.7 0.0063 1.4E-07 43.0 5.8 56 13-75 25-87 (288)
203 cd03007 PDI_a_ERp29_N PDIa fam 96.6 0.052 1.1E-06 34.0 9.0 68 4-73 11-91 (116)
204 cd02966 TlpA_like_family TlpA- 96.5 0.0074 1.6E-07 35.7 4.7 47 12-59 22-75 (116)
205 KOG0190 Protein disulfide isom 96.5 0.01 2.2E-07 45.6 6.3 66 4-74 35-111 (493)
206 cd03011 TlpA_like_ScsD_MtbDsbE 96.4 0.01 2.2E-07 36.5 5.1 29 12-40 23-51 (123)
207 PRK10542 glutathionine S-trans 96.4 0.018 3.8E-07 38.4 6.5 70 14-84 2-72 (201)
208 PTZ00102 disulphide isomerase; 96.4 0.0065 1.4E-07 45.7 4.9 22 13-34 379-400 (477)
209 PF06953 ArsD: Arsenical resis 96.3 0.023 4.9E-07 36.0 6.3 58 26-84 31-94 (123)
210 cd03012 TlpA_like_DipZ_like Tl 96.3 0.018 4E-07 35.8 5.7 55 13-69 27-91 (126)
211 PTZ00057 glutathione s-transfe 96.3 0.047 1E-06 36.8 8.1 72 11-83 3-77 (205)
212 KOG2501 Thioredoxin, nucleored 96.3 0.013 2.9E-07 38.5 5.1 44 15-58 39-89 (157)
213 PRK03147 thiol-disulfide oxido 96.2 0.044 9.5E-07 35.6 7.2 21 13-33 65-85 (173)
214 COG2143 Thioredoxin-related pr 96.1 0.024 5.1E-07 37.5 5.6 19 13-31 46-64 (182)
215 cd02958 UAS UAS family; UAS is 96.0 0.068 1.5E-06 32.7 7.2 68 4-75 10-91 (114)
216 COG3019 Predicted metal-bindin 96.0 0.028 6.1E-07 36.3 5.5 77 9-88 24-103 (149)
217 PF08534 Redoxin: Redoxin; In 95.9 0.045 9.7E-07 34.6 6.3 43 13-58 32-82 (146)
218 PTZ00056 glutathione peroxidas 95.9 0.034 7.4E-07 37.7 5.9 54 13-68 43-108 (199)
219 KOG0867 Glutathione S-transfer 95.9 0.071 1.5E-06 36.8 7.5 72 12-84 2-73 (226)
220 PRK11657 dsbG disulfide isomer 95.8 0.012 2.5E-07 41.4 3.3 21 12-32 120-140 (251)
221 cd00340 GSH_Peroxidase Glutath 95.8 0.035 7.5E-07 35.8 5.3 55 13-69 26-92 (152)
222 COG5494 Predicted thioredoxin/ 95.7 0.051 1.1E-06 37.6 5.9 72 10-89 10-87 (265)
223 TIGR01626 ytfJ_HI0045 conserve 95.6 0.062 1.3E-06 36.3 6.1 35 12-46 62-105 (184)
224 KOG4244 Failed axon connection 95.4 0.035 7.6E-07 39.5 4.7 52 21-83 61-112 (281)
225 PHA03075 glutaredoxin-like pro 95.4 0.023 4.9E-07 35.6 3.3 32 12-43 4-35 (123)
226 cd02968 SCO SCO (an acronym fo 95.3 0.082 1.8E-06 33.1 5.9 55 13-69 26-92 (142)
227 PF02114 Phosducin: Phosducin; 95.3 0.087 1.9E-06 37.5 6.5 81 13-101 150-241 (265)
228 PF10568 Tom37: Outer mitochon 95.1 0.18 3.8E-06 28.9 6.2 54 20-84 13-70 (72)
229 KOG3425 Uncharacterized conser 95.1 0.062 1.3E-06 33.9 4.6 30 19-48 43-78 (128)
230 smart00594 UAS UAS domain. 95.1 0.28 6.1E-06 30.5 7.7 62 4-69 20-91 (122)
231 PLN02412 probable glutathione 95.1 0.15 3.3E-06 33.4 6.7 21 13-33 33-53 (167)
232 TIGR01130 ER_PDI_fam protein d 95.0 0.063 1.4E-06 39.9 5.3 22 13-34 368-389 (462)
233 PTZ00256 glutathione peroxidas 95.0 0.11 2.3E-06 34.7 5.9 54 14-68 46-111 (183)
234 COG4232 Thiol:disulfide interc 94.9 0.051 1.1E-06 42.4 4.6 91 3-97 464-567 (569)
235 PLN02919 haloacid dehalogenase 94.9 0.12 2.5E-06 43.3 6.9 22 13-34 424-445 (1057)
236 TIGR02540 gpx7 putative glutat 94.8 0.11 2.4E-06 33.4 5.5 19 13-31 26-44 (153)
237 PLN02399 phospholipid hydroper 94.6 0.16 3.5E-06 35.5 6.2 20 13-32 103-122 (236)
238 PRK14018 trifunctional thiored 94.6 0.1 2.2E-06 40.5 5.6 22 13-34 60-81 (521)
239 KOG4277 Uncharacterized conser 94.4 0.049 1.1E-06 39.8 3.3 27 13-39 47-73 (468)
240 KOG0190 Protein disulfide isom 94.4 0.061 1.3E-06 41.4 3.9 26 13-38 388-413 (493)
241 cd02969 PRX_like1 Peroxiredoxi 94.3 0.25 5.3E-06 32.3 6.2 21 13-33 29-49 (171)
242 COG3634 AhpF Alkyl hydroperoxi 94.2 0.12 2.6E-06 38.8 5.0 69 4-77 111-182 (520)
243 cd05295 MDH_like Malate dehydr 94.1 0.17 3.7E-06 38.7 5.7 68 18-85 1-81 (452)
244 cd03023 DsbA_Com1_like DsbA fa 93.9 0.048 1E-06 34.3 2.2 23 11-33 7-29 (154)
245 PF00578 AhpC-TSA: AhpC/TSA fa 93.8 0.2 4.3E-06 30.5 4.8 55 13-70 29-89 (124)
246 cd02970 PRX_like2 Peroxiredoxi 93.6 0.18 3.9E-06 31.6 4.4 21 13-33 27-48 (149)
247 KOG1695 Glutathione S-transfer 93.6 0.75 1.6E-05 31.6 7.6 69 12-84 3-71 (206)
248 TIGR03759 conj_TIGR03759 integ 93.3 0.46 9.9E-06 32.5 6.2 50 10-59 109-158 (200)
249 PF04134 DUF393: Protein of un 93.3 0.22 4.7E-06 30.4 4.3 69 15-87 1-76 (114)
250 TIGR03137 AhpC peroxiredoxin. 93.2 0.24 5.1E-06 33.2 4.7 21 11-31 32-54 (187)
251 cd02971 PRX_family Peroxiredox 93.0 0.56 1.2E-05 29.1 6.0 53 13-69 26-86 (140)
252 PF06110 DUF953: Eukaryotic pr 92.9 0.053 1.2E-06 34.1 1.2 26 19-44 36-67 (119)
253 PF03190 Thioredox_DsbH: Prote 92.9 0.26 5.6E-06 32.7 4.5 72 4-75 30-116 (163)
254 COG0526 TrxA Thiol-disulfide i 92.9 0.087 1.9E-06 30.5 2.0 20 16-35 39-58 (127)
255 cd03019 DsbA_DsbA DsbA family, 92.8 0.11 2.3E-06 33.8 2.6 24 10-33 16-39 (178)
256 cd03017 PRX_BCP Peroxiredoxin 92.7 0.86 1.9E-05 28.3 6.6 51 13-68 27-85 (140)
257 KOG4420 Uncharacterized conser 92.1 0.14 3.1E-06 36.5 2.6 74 13-87 27-100 (325)
258 COG5429 Uncharacterized secret 92.0 0.31 6.8E-06 34.2 4.2 23 13-35 45-67 (261)
259 PRK13599 putative peroxiredoxi 92.0 0.34 7.4E-06 33.3 4.4 32 14-45 34-72 (215)
260 PF13462 Thioredoxin_4: Thiore 91.7 0.19 4.1E-06 32.0 2.7 20 12-31 15-34 (162)
261 cd03018 PRX_AhpE_like Peroxire 91.3 0.44 9.6E-06 30.0 4.1 21 13-33 32-53 (149)
262 cd03016 PRX_1cys Peroxiredoxin 91.3 0.46 9.9E-06 32.2 4.3 31 15-45 32-69 (203)
263 KOG0912 Thiol-disulfide isomer 91.2 0.22 4.9E-06 36.4 2.9 33 2-34 4-38 (375)
264 cd03015 PRX_Typ2cys Peroxiredo 91.2 0.62 1.3E-05 30.5 4.8 23 11-33 30-54 (173)
265 PRK09437 bcp thioredoxin-depen 91.2 0.93 2E-05 28.9 5.5 54 10-68 30-92 (154)
266 KOG0191 Thioredoxin/protein di 90.8 0.4 8.6E-06 35.5 4.0 58 10-72 48-111 (383)
267 PF13462 Thioredoxin_4: Thiore 90.7 0.65 1.4E-05 29.5 4.5 24 61-84 133-156 (162)
268 PRK13190 putative peroxiredoxi 90.5 0.61 1.3E-05 31.6 4.4 16 16-31 35-50 (202)
269 cd03022 DsbA_HCCA_Iso DsbA fam 89.6 1.1 2.4E-05 29.3 5.0 25 60-84 163-187 (192)
270 TIGR03143 AhpF_homolog putativ 89.6 0.91 2E-05 35.4 5.2 52 12-70 369-425 (555)
271 cd03014 PRX_Atyp2cys Peroxired 89.3 0.78 1.7E-05 28.8 4.0 21 13-33 30-51 (143)
272 KOG3171 Conserved phosducin-li 89.1 1.9 4.1E-05 30.2 5.9 82 13-100 163-253 (273)
273 PRK13189 peroxiredoxin; Provis 88.8 1.1 2.3E-05 31.0 4.6 31 15-45 42-79 (222)
274 PRK13191 putative peroxiredoxi 88.7 1 2.2E-05 30.9 4.5 33 15-47 40-79 (215)
275 cd03023 DsbA_Com1_like DsbA fa 86.9 1.3 2.8E-05 27.6 3.9 24 61-84 126-149 (154)
276 PRK10382 alkyl hydroperoxide r 86.5 1.5 3.2E-05 29.5 4.1 17 12-28 33-51 (187)
277 PRK10606 btuE putative glutath 86.2 3.9 8.5E-05 27.5 6.0 60 13-73 29-102 (183)
278 PF11009 DUF2847: Protein of u 86.1 3.4 7.5E-05 25.4 5.2 72 3-77 9-93 (105)
279 COG3340 PepE Peptidase E [Amin 86.0 5.7 0.00012 27.7 6.7 73 19-101 46-121 (224)
280 KOG0191 Thioredoxin/protein di 86.0 1.7 3.7E-05 32.2 4.6 25 10-34 163-187 (383)
281 PF11287 DUF3088: Protein of u 85.4 1.5 3.3E-05 27.3 3.4 50 21-72 24-76 (112)
282 KOG0914 Thioredoxin-like prote 85.0 1.2 2.7E-05 31.2 3.2 72 2-75 133-218 (265)
283 KOG3414 Component of the U4/U6 84.8 3.3 7.2E-05 26.5 4.8 66 3-75 13-90 (142)
284 cd03010 TlpA_like_DsbE TlpA-li 84.7 6.8 0.00015 23.8 6.5 61 4-71 47-108 (127)
285 KOG1672 ATP binding protein [P 84.7 4 8.8E-05 28.0 5.5 92 4-100 78-180 (211)
286 PRK10954 periplasmic protein d 84.3 1.3 2.7E-05 30.1 3.0 20 61-80 164-183 (207)
287 PRK15000 peroxidase; Provision 84.2 3.7 8E-05 27.8 5.3 22 10-31 34-57 (200)
288 KOG1731 FAD-dependent sulfhydr 83.7 0.47 1E-05 37.3 0.8 59 12-70 60-122 (606)
289 PF10865 DUF2703: Domain of un 83.6 4.1 8.8E-05 25.7 4.8 47 19-75 13-72 (120)
290 COG0041 PurE Phosphoribosylcar 83.5 4.7 0.0001 26.6 5.2 72 14-85 8-103 (162)
291 PRK00522 tpx lipid hydroperoxi 83.5 3.4 7.3E-05 27.0 4.7 46 13-59 48-97 (167)
292 PTZ00137 2-Cys peroxiredoxin; 83.2 3.4 7.3E-05 29.4 4.9 37 9-45 97-142 (261)
293 KOG0913 Thiol-disulfide isomer 82.6 0.37 8.1E-06 33.8 -0.1 61 6-73 36-105 (248)
294 PF01323 DSBA: DSBA-like thior 81.4 1.4 2.9E-05 28.9 2.2 33 12-44 1-38 (193)
295 PRK11509 hydrogenase-1 operon 81.0 12 0.00025 24.0 6.3 51 21-78 48-107 (132)
296 PF03575 Peptidase_S51: Peptid 79.8 4.7 0.0001 25.9 4.3 64 23-96 1-64 (154)
297 TIGR01162 purE phosphoribosyla 79.2 6.8 0.00015 25.8 4.9 73 14-86 4-100 (156)
298 COG3011 Predicted thiol-disulf 79.1 15 0.00032 23.8 7.4 72 9-84 6-82 (137)
299 PRK10954 periplasmic protein d 78.6 1.5 3.2E-05 29.7 1.7 21 10-30 38-58 (207)
300 PF03227 GILT: Gamma interfero 77.7 2 4.3E-05 26.2 2.0 16 12-27 2-17 (108)
301 PF01323 DSBA: DSBA-like thior 77.1 5.8 0.00013 25.9 4.2 25 60-84 163-188 (193)
302 PRK00766 hypothetical protein; 76.9 5.3 0.00012 27.3 4.0 51 35-85 42-94 (194)
303 COG1628 Endonuclease V homolog 76.0 7 0.00015 26.5 4.3 50 35-85 41-92 (185)
304 cd03019 DsbA_DsbA DsbA family, 74.1 5.6 0.00012 25.6 3.5 20 61-80 140-159 (178)
305 cd00897 UGPase_euk Eukaryotic 74.0 29 0.00064 25.2 7.4 79 24-103 39-141 (300)
306 PTZ00253 tryparedoxin peroxida 73.8 8.3 0.00018 25.9 4.4 32 14-45 41-80 (199)
307 PF04566 RNA_pol_Rpb2_4: RNA p 73.5 3.7 8E-05 22.8 2.2 17 68-84 1-17 (63)
308 TIGR03190 benz_CoA_bzdN benzoy 73.1 14 0.0003 27.6 5.7 11 65-75 344-354 (377)
309 COG0602 NrdG Organic radical a 72.9 4.6 0.0001 27.7 3.0 86 12-104 22-114 (212)
310 cd03024 DsbA_FrnE DsbA family, 72.9 8.7 0.00019 25.3 4.3 23 61-83 172-195 (201)
311 KOG2603 Oligosaccharyltransfer 72.7 8.5 0.00019 28.3 4.4 63 2-71 48-133 (331)
312 TIGR03439 methyl_EasF probable 72.3 7.4 0.00016 28.5 4.1 61 16-82 80-145 (319)
313 TIGR03865 PQQ_CXXCW PQQ-depend 71.5 6.5 0.00014 25.7 3.3 29 9-37 115-143 (162)
314 COG1999 Uncharacterized protei 71.1 20 0.00042 24.5 5.7 59 13-72 71-139 (207)
315 COG1651 DsbG Protein-disulfide 69.1 5.9 0.00013 27.2 2.9 21 61-81 212-232 (244)
316 cd03013 PRX5_like Peroxiredoxi 68.1 17 0.00038 23.4 4.8 19 9-27 28-48 (155)
317 cd03025 DsbA_FrnE_like DsbA fa 67.3 4 8.7E-05 26.7 1.7 21 12-32 2-22 (193)
318 PF15643 Tox-PL-2: Papain fold 67.0 17 0.00036 22.2 4.1 27 20-46 20-47 (100)
319 cd08183 Fe-ADH2 Iron-containin 66.8 35 0.00075 25.3 6.7 63 11-74 23-86 (374)
320 PF00004 AAA: ATPase family as 66.2 7.8 0.00017 23.3 2.8 60 13-72 1-66 (132)
321 TIGR00014 arsC arsenate reduct 66.1 16 0.00036 22.3 4.2 59 22-80 36-107 (114)
322 TIGR00385 dsbE periplasmic pro 65.7 34 0.00075 22.2 6.4 62 4-73 85-149 (173)
323 PF01949 DUF99: Protein of unk 64.6 4.3 9.4E-05 27.5 1.5 49 36-85 37-87 (187)
324 PF09413 DUF2007: Domain of un 63.9 15 0.00032 20.0 3.4 53 13-73 1-53 (67)
325 KOG2454 Betaine aldehyde dehyd 63.7 14 0.0003 28.3 4.0 38 7-44 213-255 (583)
326 COG2761 FrnE Predicted dithiol 63.7 3.8 8.1E-05 28.7 1.0 22 12-33 7-28 (225)
327 COG1331 Highly conserved prote 63.5 38 0.00083 27.5 6.6 59 10-68 43-112 (667)
328 PF00731 AIRC: AIR carboxylase 63.5 19 0.00041 23.6 4.2 41 19-59 11-51 (150)
329 COG1651 DsbG Protein-disulfide 63.4 13 0.00029 25.4 3.8 18 14-31 123-140 (244)
330 PF02630 SCO1-SenC: SCO1/SenC; 63.3 38 0.00082 22.3 5.8 48 13-60 56-114 (174)
331 PF06053 DUF929: Domain of unk 62.9 6.9 0.00015 27.8 2.3 23 13-35 62-88 (249)
332 PF13353 Fer4_12: 4Fe-4S singl 61.9 9.6 0.00021 23.5 2.6 14 12-25 7-23 (139)
333 cd03129 GAT1_Peptidase_E_like 61.7 46 0.001 22.4 9.2 77 10-95 29-109 (210)
334 cd03022 DsbA_HCCA_Iso DsbA fam 61.6 7.6 0.00017 25.3 2.2 27 13-39 1-31 (192)
335 TIGR01616 nitro_assoc nitrogen 60.4 20 0.00044 22.5 3.9 59 22-80 38-106 (126)
336 cd02974 AhpF_NTD_N Alkyl hydro 60.2 14 0.0003 22.1 3.0 22 13-35 23-44 (94)
337 cd03036 ArsC_like Arsenate Red 60.2 18 0.00039 22.0 3.6 31 50-80 78-108 (111)
338 PF00403 HMA: Heavy-metal-asso 59.9 24 0.00053 18.6 3.8 20 18-37 6-27 (62)
339 cd04335 PrdX_deacylase This CD 59.9 26 0.00057 22.4 4.5 45 25-70 2-46 (156)
340 PF09822 ABC_transp_aux: ABC-t 59.3 22 0.00047 24.9 4.3 56 4-61 20-86 (271)
341 PF00282 Pyridoxal_deC: Pyrido 58.9 25 0.00054 26.1 4.7 73 10-84 139-216 (373)
342 KOG1734 Predicted RING-contain 58.2 5 0.00011 29.0 0.9 14 14-27 266-279 (328)
343 cd06387 PBP1_iGluR_AMPA_GluR3 57.9 46 0.00099 24.7 6.0 81 2-83 54-145 (372)
344 cd03034 ArsC_ArsC Arsenate Red 57.5 31 0.00068 20.9 4.3 58 22-79 36-105 (112)
345 cd03024 DsbA_FrnE DsbA family, 56.2 8.1 0.00018 25.5 1.6 19 13-31 1-19 (201)
346 KOG2961 Predicted hydrolase (H 55.7 60 0.0013 21.7 6.1 91 2-95 71-167 (190)
347 PF11399 DUF3192: Protein of u 55.6 10 0.00022 23.3 1.8 16 62-77 79-94 (102)
348 PF07728 AAA_5: AAA domain (dy 55.1 31 0.00067 21.2 4.1 40 12-51 1-40 (139)
349 PF00763 THF_DHG_CYH: Tetrahyd 54.8 28 0.00062 21.4 3.9 59 12-70 31-93 (117)
350 PF01704 UDPGP: UTP--glucose-1 54.8 52 0.0011 25.1 5.9 79 24-103 92-196 (420)
351 cd08192 Fe-ADH7 Iron-containin 54.0 78 0.0017 23.3 6.6 62 11-73 25-91 (370)
352 cd04336 YeaK YeaK is an unchar 53.4 30 0.00065 22.0 3.9 27 25-51 2-28 (153)
353 cd08193 HVD 5-hydroxyvalerate 53.4 80 0.0017 23.3 6.6 65 11-75 27-95 (376)
354 cd03145 GAT1_cyanophycinase Ty 53.4 70 0.0015 21.8 7.3 77 11-96 30-112 (217)
355 KOG3027 Mitochondrial outer me 52.5 47 0.001 23.3 4.8 58 19-86 32-89 (257)
356 cd03021 DsbA_GSTK DsbA family, 52.4 19 0.00042 24.2 3.0 32 12-43 2-39 (209)
357 COG0703 AroK Shikimate kinase 52.3 13 0.00028 25.0 2.0 30 10-39 2-31 (172)
358 TIGR01689 EcbF-BcbF capsule bi 52.2 40 0.00087 21.2 4.3 34 12-45 42-87 (126)
359 cd08186 Fe-ADH8 Iron-containin 51.5 81 0.0018 23.4 6.4 64 11-75 27-96 (383)
360 KOG0079 GTP-binding protein H- 51.4 32 0.0007 22.9 3.8 49 25-73 68-121 (198)
361 TIGR00011 YbaK_EbsC ybaK/ebsC 50.5 40 0.00087 21.4 4.2 23 26-48 2-24 (152)
362 cd08170 GlyDH Glycerol dehydro 50.2 79 0.0017 23.1 6.1 49 11-59 23-73 (351)
363 TIGR00635 ruvB Holliday juncti 50.0 88 0.0019 22.0 7.4 58 12-72 32-89 (305)
364 COG1154 Dxs Deoxyxylulose-5-ph 49.7 49 0.0011 26.7 5.1 62 17-81 509-571 (627)
365 cd01444 GlpE_ST GlpE sulfurtra 49.6 47 0.001 18.8 4.1 28 9-37 55-82 (96)
366 PF15616 TerY-C: TerY-C metal 49.3 5.6 0.00012 25.5 0.0 14 15-28 74-87 (131)
367 cd08188 Fe-ADH4 Iron-containin 49.2 91 0.002 23.1 6.4 49 11-59 29-81 (377)
368 cd08551 Fe-ADH iron-containing 48.7 1E+02 0.0023 22.6 6.6 49 11-59 24-76 (370)
369 cd08185 Fe-ADH1 Iron-containin 48.4 99 0.0021 22.9 6.5 49 11-59 26-79 (380)
370 KOG3028 Translocase of outer m 48.4 80 0.0017 23.3 5.7 64 12-86 3-72 (313)
371 PRK15348 type III secretion sy 48.3 30 0.00065 24.6 3.5 89 8-98 16-120 (249)
372 cd03033 ArsC_15kD Arsenate Red 48.3 37 0.0008 20.8 3.6 58 23-80 38-105 (113)
373 cd06388 PBP1_iGluR_AMPA_GluR4 47.6 1.1E+02 0.0024 22.5 6.6 82 2-84 54-146 (371)
374 PLN02590 probable tyrosine dec 47.4 81 0.0018 24.9 6.0 73 11-85 228-310 (539)
375 cd08176 LPO Lactadehyde:propan 46.9 85 0.0019 23.2 5.9 49 11-59 29-81 (377)
376 cd02977 ArsC_family Arsenate R 46.6 50 0.0011 19.5 3.9 55 24-78 38-105 (105)
377 PRK10624 L-1,2-propanediol oxi 46.1 1.1E+02 0.0025 22.7 6.5 49 11-59 31-83 (382)
378 PF02288 Dehydratase_MU: Dehyd 45.8 60 0.0013 20.1 4.2 60 11-72 3-65 (112)
379 TIGR03567 FMN_reduc_SsuE FMN r 45.5 70 0.0015 20.8 4.8 34 2-35 57-92 (171)
380 KOG3160 Gamma-interferon induc 45.5 19 0.00042 25.1 2.2 16 12-27 42-57 (220)
381 KOG4749 Inositol polyphosphate 45.4 49 0.0011 24.7 4.2 57 20-78 156-219 (375)
382 PF02966 DIM1: Mitosis protein 44.8 26 0.00057 22.5 2.5 67 4-75 11-87 (133)
383 PRK09860 putative alcohol dehy 44.4 1.3E+02 0.0028 22.5 6.5 49 11-59 32-84 (383)
384 COG1163 DRG Predicted GTPase [ 44.3 1.2E+02 0.0027 22.7 6.2 79 25-106 202-297 (365)
385 PF05496 RuvB_N: Holliday junc 44.2 1.1E+02 0.0024 21.5 6.5 60 12-74 52-111 (233)
386 PF13344 Hydrolase_6: Haloacid 44.2 51 0.0011 19.6 3.7 56 2-59 21-77 (101)
387 COG4822 CbiK Cobalamin biosynt 43.8 1.2E+02 0.0025 21.6 6.2 66 10-75 136-209 (265)
388 TIGR02263 benz_CoA_red_C benzo 43.6 71 0.0015 23.8 5.1 33 13-45 325-361 (380)
389 PRK04195 replication factor C 43.4 1.5E+02 0.0033 22.8 7.6 36 10-45 39-74 (482)
390 PF03470 zf-XS: XS zinc finger 43.3 8 0.00017 19.9 0.0 6 21-26 1-6 (43)
391 cd04911 ACT_AKiii-YclM-BS_1 AC 42.9 26 0.00056 20.2 2.1 22 19-40 13-34 (76)
392 cd02127 PA_hPAP21_like PA_hPAP 42.9 56 0.0012 20.2 3.8 62 10-73 34-97 (118)
393 PRK15317 alkyl hydroperoxide r 42.6 27 0.00059 26.9 2.8 22 13-35 23-44 (517)
394 cd00002 YbaK_deacylase This CD 42.4 55 0.0012 20.8 3.9 23 26-48 3-25 (152)
395 cd03082 TRX_Fd_NuoE_W_FDH_beta 42.1 54 0.0012 18.4 3.4 20 60-79 42-61 (72)
396 cd01520 RHOD_YbbB Member of th 41.8 66 0.0014 19.7 4.1 34 9-44 85-118 (128)
397 cd01521 RHOD_PspE2 Member of t 41.4 75 0.0016 18.8 4.3 29 9-37 63-92 (110)
398 TIGR00734 hisAF_rel hisA/hisF 41.2 91 0.002 21.4 5.0 62 23-87 142-205 (221)
399 cd01896 DRG The developmentall 41.1 62 0.0014 22.2 4.2 49 23-73 137-185 (233)
400 COG2608 CopZ Copper chaperone 41.1 65 0.0014 17.9 4.3 17 19-35 11-28 (71)
401 PF12689 Acid_PPase: Acid Phos 41.0 1.1E+02 0.0023 20.4 5.3 60 12-74 63-134 (169)
402 cd01644 RT_pepA17 RT_pepA17: R 40.7 24 0.00051 24.2 2.0 37 67-103 138-175 (213)
403 PRK15454 ethanol dehydrogenase 40.4 1.5E+02 0.0033 22.2 6.4 49 11-59 50-102 (395)
404 PF11238 DUF3039: Protein of u 39.9 20 0.00043 19.7 1.2 13 19-31 45-57 (58)
405 CHL00144 odpB pyruvate dehydro 39.9 1.1E+02 0.0023 22.5 5.4 68 12-83 203-273 (327)
406 cd08182 HEPD Hydroxyethylphosp 39.1 1.6E+02 0.0034 21.7 6.4 49 11-59 24-73 (367)
407 PRK08118 topology modulation p 39.0 52 0.0011 21.4 3.4 32 11-42 2-33 (167)
408 cd04816 PA_SaNapH_like PA_SaNa 38.5 93 0.002 19.0 5.0 29 10-39 43-71 (122)
409 PLN02880 tyrosine decarboxylas 38.4 1E+02 0.0022 23.9 5.4 71 11-84 180-261 (490)
410 cd06389 PBP1_iGluR_AMPA_GluR2 38.4 1.3E+02 0.0029 22.0 5.8 81 2-83 48-139 (370)
411 KOG0572 Glutamine phosphoribos 38.2 26 0.00055 26.8 2.0 30 68-104 360-389 (474)
412 PF13364 BetaGal_dom4_5: Beta- 38.0 28 0.00062 21.2 1.9 17 63-79 62-78 (111)
413 PF10087 DUF2325: Uncharacteri 37.9 85 0.0019 18.4 4.8 38 4-41 42-81 (97)
414 PLN02683 pyruvate dehydrogenas 37.8 98 0.0021 23.0 5.0 68 12-83 230-300 (356)
415 TIGR03140 AhpF alkyl hydropero 37.7 36 0.00078 26.3 2.8 22 13-35 23-44 (515)
416 PF08874 DUF1835: Domain of un 36.9 83 0.0018 19.2 4.0 40 4-44 80-123 (124)
417 PRK14180 bifunctional 5,10-met 36.9 1.6E+02 0.0035 21.3 5.8 60 12-71 33-96 (282)
418 PF08599 Nbs1_C: DNA damage re 36.9 22 0.00048 19.8 1.2 31 61-97 14-45 (65)
419 TIGR02638 lactal_redase lactal 36.8 1.6E+02 0.0034 21.9 6.0 49 11-59 30-82 (379)
420 PRK14189 bifunctional 5,10-met 36.7 1.6E+02 0.0036 21.3 5.9 59 12-70 34-96 (285)
421 TIGR03191 benz_CoA_bzdO benzoy 36.7 66 0.0014 24.6 4.0 9 65-73 392-400 (430)
422 PF14237 DUF4339: Domain of un 36.6 35 0.00076 17.1 1.8 24 68-91 4-29 (45)
423 cd01781 AF6_RA_repeat2 Ubiquit 36.6 78 0.0017 19.3 3.6 33 35-67 14-47 (100)
424 cd08189 Fe-ADH5 Iron-containin 36.6 1.7E+02 0.0037 21.6 6.2 49 11-59 27-79 (374)
425 COG1631 RPL42A Ribosomal prote 36.0 10 0.00022 22.8 -0.3 9 18-26 8-16 (94)
426 KOG2863 RNA lariat debranching 35.5 35 0.00076 25.9 2.3 25 50-74 59-85 (456)
427 PRK14190 bifunctional 5,10-met 35.4 1.7E+02 0.0038 21.2 5.9 59 12-70 34-96 (284)
428 PRK14174 bifunctional 5,10-met 35.3 1.8E+02 0.0038 21.2 5.9 59 12-70 33-95 (295)
429 TIGR02069 cyanophycinase cyano 35.3 1.6E+02 0.0034 20.7 6.2 34 12-45 30-67 (250)
430 PLN02474 UTP--glucose-1-phosph 35.3 2.2E+02 0.0047 22.3 7.9 77 26-103 117-217 (469)
431 PRK14964 DNA polymerase III su 35.2 1.2E+02 0.0026 23.7 5.3 52 21-72 70-124 (491)
432 PHA00729 NTP-binding motif con 35.1 1.2E+02 0.0025 21.2 4.8 24 12-35 19-42 (226)
433 PF11008 DUF2846: Protein of u 34.9 35 0.00075 20.9 2.0 16 63-78 40-55 (117)
434 cd00755 YgdL_like Family of ac 34.7 70 0.0015 22.3 3.6 22 16-37 151-172 (231)
435 PRK14958 DNA polymerase III su 34.7 97 0.0021 24.2 4.7 53 21-73 73-128 (509)
436 PRK14167 bifunctional 5,10-met 34.6 1.8E+02 0.0039 21.2 5.8 59 12-70 33-95 (297)
437 PRK14191 bifunctional 5,10-met 34.6 1.8E+02 0.0039 21.1 5.9 59 12-70 33-95 (285)
438 cd03146 GAT1_Peptidase_E Type 34.5 1.5E+02 0.0032 20.1 9.0 64 22-97 46-110 (212)
439 PF14606 Lipase_GDSL_3: GDSL-l 34.4 1.4E+02 0.0031 20.0 5.0 60 13-72 36-101 (178)
440 COG5309 Exo-beta-1,3-glucanase 34.2 1.7E+02 0.0036 21.4 5.4 67 12-79 78-148 (305)
441 PRK00080 ruvB Holliday junctio 34.2 1.8E+02 0.0039 21.0 6.8 60 11-73 52-111 (328)
442 PF07908 D-aminoacyl_C: D-amin 34.0 35 0.00076 17.6 1.6 17 63-79 18-34 (48)
443 cd08187 BDH Butanol dehydrogen 34.0 2E+02 0.0042 21.4 6.1 49 11-59 29-82 (382)
444 PRK14175 bifunctional 5,10-met 33.4 1.9E+02 0.0041 21.0 5.9 59 12-70 34-96 (286)
445 PF08308 PEGA: PEGA domain; I 33.3 37 0.00079 18.5 1.7 12 67-78 14-25 (71)
446 CHL00195 ycf46 Ycf46; Provisio 33.3 1.5E+02 0.0032 23.2 5.5 35 11-45 260-294 (489)
447 PF07511 DUF1525: Protein of u 33.2 68 0.0015 20.0 3.0 24 61-84 80-104 (114)
448 PRK14166 bifunctional 5,10-met 33.1 1.9E+02 0.0041 21.0 5.9 59 12-70 32-94 (282)
449 cd04333 ProX_deacylase This CD 33.0 86 0.0019 19.8 3.7 21 25-45 2-22 (148)
450 cd08194 Fe-ADH6 Iron-containin 32.8 2E+02 0.0044 21.2 6.5 49 11-59 24-76 (375)
451 cd04732 HisA HisA. Phosphorib 32.7 1.4E+02 0.0031 20.1 4.9 60 27-88 34-95 (234)
452 cd06424 UGGPase UGGPase cataly 32.7 2E+02 0.0044 21.2 8.1 25 77-102 121-146 (315)
453 PF14437 MafB19-deam: MafB19-l 32.6 1.2E+02 0.0025 19.9 4.1 33 11-43 100-135 (146)
454 PF11324 DUF3126: Protein of u 32.6 95 0.0021 17.3 3.7 12 67-78 31-42 (63)
455 PRK14169 bifunctional 5,10-met 32.1 2E+02 0.0043 20.9 5.9 59 12-70 32-94 (282)
456 TIGR02260 benz_CoA_red_B benzo 32.1 1.7E+02 0.0037 22.2 5.6 34 13-46 354-392 (413)
457 KOG0371 Serine/threonine prote 32.1 41 0.00089 24.4 2.1 29 63-92 58-86 (319)
458 PLN02790 transketolase 32.0 1.5E+02 0.0032 24.0 5.4 89 11-99 541-641 (654)
459 PF00571 CBS: CBS domain CBS d 31.8 46 0.001 16.8 1.9 35 44-79 13-47 (57)
460 TIGR01702 CO_DH_cata carbon-mo 31.8 42 0.00091 27.1 2.4 36 65-100 245-280 (621)
461 PLN02234 1-deoxy-D-xylulose-5- 31.8 1.6E+02 0.0034 24.0 5.5 65 12-80 546-612 (641)
462 TIGR03521 GldG gliding-associa 31.7 1.9E+02 0.0041 22.8 6.0 46 4-49 43-98 (552)
463 cd04731 HisF The cyclase subun 31.7 1.7E+02 0.0036 20.0 5.2 60 26-87 31-92 (243)
464 COG2256 MGS1 ATPase related to 31.5 1.9E+02 0.0042 22.3 5.7 68 5-73 40-113 (436)
465 cd08181 PPD-like 1,3-propanedi 31.5 2.1E+02 0.0046 21.0 6.8 49 11-59 26-79 (357)
466 COG2331 Uncharacterized protei 31.4 22 0.00049 20.7 0.6 19 20-38 35-54 (82)
467 KOG0078 GTP-binding protein SE 30.9 1.5E+02 0.0032 20.6 4.7 52 23-74 74-127 (207)
468 PF13394 Fer4_14: 4Fe-4S singl 30.7 61 0.0013 19.3 2.6 19 66-84 50-70 (119)
469 cd01448 TST_Repeat_1 Thiosulfa 30.6 1.2E+02 0.0027 18.0 4.0 26 12-37 81-106 (122)
470 TIGR03167 tRNA_sel_U_synt tRNA 30.5 1.8E+02 0.0039 21.2 5.3 73 12-88 76-150 (311)
471 PRK11892 pyruvate dehydrogenas 30.1 1.6E+02 0.0035 22.8 5.2 68 12-83 342-412 (464)
472 PF15379 DUF4606: Domain of un 30.0 44 0.00096 20.5 1.8 20 14-33 27-46 (104)
473 PF03691 UPF0167: Uncharacteri 29.8 54 0.0012 22.1 2.3 76 21-98 52-137 (176)
474 PF04805 Pox_E10: E10-like pro 29.8 47 0.001 18.8 1.7 20 17-36 14-34 (70)
475 PRK12571 1-deoxy-D-xylulose-5- 29.7 2.1E+02 0.0044 23.2 5.9 67 12-82 506-574 (641)
476 PF04512 Baculo_PEP_N: Baculov 29.6 65 0.0014 19.5 2.5 24 63-86 3-27 (97)
477 PRK14173 bifunctional 5,10-met 29.5 2.2E+02 0.0048 20.7 5.9 60 11-70 30-93 (287)
478 cd08179 NADPH_BDH NADPH-depend 29.5 2.2E+02 0.0047 21.1 5.7 49 11-59 24-77 (375)
479 smart00450 RHOD Rhodanese Homo 29.5 1.1E+02 0.0023 16.9 3.5 26 11-37 57-82 (100)
480 PRK02935 hypothetical protein; 29.3 28 0.0006 21.6 0.8 16 20-35 72-87 (110)
481 PRK12323 DNA polymerase III su 29.1 1.3E+02 0.0027 24.9 4.6 70 21-96 78-150 (700)
482 KOG3170 Conserved phosducin-li 29.1 81 0.0018 22.0 3.1 48 16-71 118-168 (240)
483 KOG3988 Protein-tyrosine sulfo 29.1 89 0.0019 23.1 3.4 25 60-84 65-89 (378)
484 PF12949 HeH: HeH/LEM domain; 28.8 44 0.00094 16.3 1.3 15 25-39 7-21 (35)
485 PRK14186 bifunctional 5,10-met 28.7 2.4E+02 0.0051 20.6 5.9 58 13-70 35-96 (297)
486 KOG2672 Lipoate synthase [Coen 28.6 1.1E+02 0.0023 22.6 3.8 74 13-88 114-214 (360)
487 PRK14188 bifunctional 5,10-met 28.5 2.4E+02 0.0051 20.6 5.9 59 12-70 34-96 (296)
488 PRK14179 bifunctional 5,10-met 28.5 2.3E+02 0.005 20.5 5.9 59 12-70 34-96 (284)
489 TIGR01501 MthylAspMutase methy 28.2 1.7E+02 0.0036 18.7 7.6 47 49-103 69-115 (134)
490 PRK10792 bifunctional 5,10-met 28.2 2.4E+02 0.0051 20.5 5.9 50 21-70 48-97 (285)
491 smart00501 BRIGHT BRIGHT, ARID 28.1 1.1E+02 0.0024 17.8 3.3 22 52-75 10-32 (93)
492 PRK14177 bifunctional 5,10-met 28.0 2.4E+02 0.0052 20.5 5.7 59 12-70 35-97 (284)
493 PF05949 DUF881: Bacterial pro 27.9 1.3E+02 0.0028 19.4 3.8 37 66-102 79-125 (149)
494 PLN02897 tetrahydrofolate dehy 27.8 2.6E+02 0.0057 20.9 5.9 59 12-70 88-150 (345)
495 PRK02458 ribose-phosphate pyro 27.7 2E+02 0.0044 21.1 5.2 86 9-102 6-91 (323)
496 PRK09301 circadian clock prote 27.7 1.5E+02 0.0033 18.2 3.9 65 13-84 9-85 (103)
497 PF13743 Thioredoxin_5: Thiore 27.7 55 0.0012 21.5 2.1 19 15-33 2-20 (176)
498 PTZ00494 tuzin-like protein; P 27.7 1.7E+02 0.0036 23.5 4.8 56 11-73 395-452 (664)
499 PRK14172 bifunctional 5,10-met 27.7 2.4E+02 0.0052 20.4 5.8 59 12-70 34-96 (278)
500 cd08190 HOT Hydroxyacid-oxoaci 27.6 2.7E+02 0.0059 21.0 7.0 49 11-59 24-76 (414)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=3.7e-35 Score=179.65 Aligned_cols=98 Identities=54% Similarity=1.042 Sum_probs=93.2
Q ss_pred HHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 4 VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
+++++++++|+||++++||||.+++++|++++++|+++|||.+++..++++++.+.++++|+|+|||||++|||+|++.+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 46789999999999999999999999999999999999999999888888888888888999999999999999999999
Q ss_pred HHHhCCchHHHHhcCcee
Q 042938 84 LHVQNELGPLLVRAGAIW 101 (106)
Q Consensus 84 ~~~~g~L~~~L~~~g~~~ 101 (106)
++++|+|.++|+++|+++
T Consensus 81 l~~~G~L~~~l~~~~~~~ 98 (99)
T TIGR02189 81 LHISGSLVPMLKQAGALW 98 (99)
T ss_pred HHHcCCHHHHHHHhCccc
Confidence 999999999999999985
No 2
>PHA03050 glutaredoxin; Provisional
Probab=100.00 E-value=1.9e-33 Score=174.39 Aligned_cols=100 Identities=20% Similarity=0.444 Sum_probs=93.7
Q ss_pred hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCC---CceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGA---NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP 78 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v---~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~ 78 (106)
+++++++++++|+||++++||||.+++++|+++++ +|+++||+...+..++++.+.+.++.+|||+|||||++|||+
T Consensus 4 ~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 4 EFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 46889999999999999999999999999999999 799999998766677888999998889999999999999999
Q ss_pred hHHHhHHHhCCchHHHHhcCcee
Q 042938 79 NQVMSLHVQNELGPLLVRAGAIW 101 (106)
Q Consensus 79 ~~~~~~~~~g~L~~~L~~~g~~~ 101 (106)
|++.+++++|+|.++|+.+|+++
T Consensus 84 ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 84 SDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred HHHHHHHHcCCHHHHHHHccccc
Confidence 99999999999999999999975
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=173.20 Aligned_cols=101 Identities=48% Similarity=0.850 Sum_probs=97.5
Q ss_pred ChHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 1 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
++++++++++++|+||++++||||++++.+|...++.+..+++|.+++..++++++.+.++++|+|.|||+|++|||.++
T Consensus 4 ~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred HHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHhCCchHHHHhcCcee
Q 042938 81 VMSLHVQNELGPLLVRAGAIW 101 (106)
Q Consensus 81 ~~~~~~~g~L~~~L~~~g~~~ 101 (106)
++++|.+|+|.++|+++|++|
T Consensus 84 l~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 84 LMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHHcCCHHHHHHHhhccC
Confidence 999999999999999999875
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=1.4e-32 Score=171.67 Aligned_cols=97 Identities=23% Similarity=0.448 Sum_probs=90.2
Q ss_pred hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938 2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG 76 (106)
+++++++++++|+||++ |+||||.+++++|++++++|.++|++.++ ++++++.+.++++|||+|||||++||
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 57899999999999999 49999999999999999999999998764 47778999999999999999999999
Q ss_pred cchHHHhHHHhCCchHHHHhcCcee
Q 042938 77 GPNQVMSLHVQNELGPLLVRAGAIW 101 (106)
Q Consensus 77 g~~~~~~~~~~g~L~~~L~~~g~~~ 101 (106)
|+|++.+++.+|+|.++|+++|+++
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 9999999999999999999999854
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.97 E-value=6.5e-30 Score=155.91 Aligned_cols=91 Identities=22% Similarity=0.478 Sum_probs=83.0
Q ss_pred ChHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938 1 MDMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV 75 (106)
Q Consensus 1 ~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i 75 (106)
++++++++++++|+||++ |+||||.+++++|+++|++|+++||+.++ ++++++.+.++.+|+|+|||||++|
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEE
Confidence 367899999999999998 89999999999999999999999997653 4566888888889999999999999
Q ss_pred ecchHHHhHHHhCCchHHH
Q 042938 76 GGPNQVMSLHVQNELGPLL 94 (106)
Q Consensus 76 Gg~~~~~~~~~~g~L~~~L 94 (106)
||+|++.+++++|+|.++|
T Consensus 79 GG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 79 GGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred eChHHHHHHHHCcChHHhC
Confidence 9999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.95 E-value=1.1e-27 Score=144.16 Aligned_cols=85 Identities=24% Similarity=0.540 Sum_probs=77.5
Q ss_pred HHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938 4 VTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP 78 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~ 78 (106)
+++++++++|+||++ ++||||.+++++|++.+++|+++|++.+ .++++++.+.++..|+|+||+||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467899999999998 6999999999999999999999999865 34667888888889999999999999999
Q ss_pred hHHHhHHHhCCch
Q 042938 79 NQVMSLHVQNELG 91 (106)
Q Consensus 79 ~~~~~~~~~g~L~ 91 (106)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999985
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.94 E-value=3e-26 Score=135.88 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL 90 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L 90 (106)
.+|++|++++||+|++++.+|++.+++|+++||+.+++ .++.+.+.++..++|+||+||++|||++++.+++.+|+|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 47999999999999999999999999999999987654 334566667789999999999999999999999999999
Q ss_pred hHHHH
Q 042938 91 GPLLV 95 (106)
Q Consensus 91 ~~~L~ 95 (106)
.++|+
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 99874
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.94 E-value=3.3e-26 Score=155.54 Aligned_cols=92 Identities=18% Similarity=0.431 Sum_probs=84.5
Q ss_pred hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938 2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG 76 (106)
++++++++.++|++|++ |+||||++++.+|++.+++|.++||+.++ ++++++.++++++|+|+|||||++||
T Consensus 104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~G~~IG 180 (204)
T PTZ00062 104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVNGELIG 180 (204)
T ss_pred HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 56889999999999999 68999999999999999999999999664 45668888888899999999999999
Q ss_pred cchHHHhHHHhCCchHHHHh
Q 042938 77 GPNQVMSLHVQNELGPLLVR 96 (106)
Q Consensus 77 g~~~~~~~~~~g~L~~~L~~ 96 (106)
|+|++++++++|+|.++|.+
T Consensus 181 G~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 181 GHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred ChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999865
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.93 E-value=9.8e-26 Score=132.20 Aligned_cols=79 Identities=32% Similarity=0.547 Sum_probs=70.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGP 92 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~ 92 (106)
|++|++++||+|.+++++|+++|++|+++|++.++. .++.+...++..++|+||+||++|||++++.+++++|+|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 689999999999999999999999999999997653 33355566667999999999999999999999999999998
Q ss_pred HH
Q 042938 93 LL 94 (106)
Q Consensus 93 ~L 94 (106)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 65
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.93 E-value=3.7e-25 Score=130.40 Aligned_cols=82 Identities=35% Similarity=0.629 Sum_probs=76.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCC--ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938 13 VVIFSKSECCICFSIQTLICGFGAN--PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL 90 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L 90 (106)
|++|++++||+|.+++++|++.+++ |+.++|+.+++..++++++.+.++..++|+||+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 99999999877777778888888889999999999999999999999999999
Q ss_pred hHHH
Q 042938 91 GPLL 94 (106)
Q Consensus 91 ~~~L 94 (106)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 11
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=128.53 Aligned_cols=78 Identities=26% Similarity=0.432 Sum_probs=69.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL 90 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L 90 (106)
.|+||++++||||.+++++|++.|++|++++++.++. .+.++++...++.+|||+||+||+++||++++.+++..|.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 6899999999999999999999999999999999874 34445776766789999999999999999999999888876
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.92 E-value=1.9e-24 Score=127.04 Aligned_cols=81 Identities=44% Similarity=0.739 Sum_probs=75.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCch
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELG 91 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~ 91 (106)
+|++|++++||+|.+++++|++.+++|+.++++.+++..++++.+.+.++..++|++|++|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999998876667778888888899999999999999999999999999997
Q ss_pred H
Q 042938 92 P 92 (106)
Q Consensus 92 ~ 92 (106)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 6
No 13
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=131.10 Aligned_cols=95 Identities=27% Similarity=0.515 Sum_probs=87.3
Q ss_pred ChHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcC-CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938 1 MDMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFG-ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL 74 (106)
Q Consensus 1 ~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~-v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~ 74 (106)
++++++.++.++|++|.+ |.|.|+.++..+|...| ++|..+||-.+++ +++.++.++.++|+||++|+|++
T Consensus 5 ~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e---iR~~lk~~s~WPT~PQLyi~GEf 81 (105)
T COG0278 5 LDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE---IRQGLKEYSNWPTFPQLYVNGEF 81 (105)
T ss_pred HHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH---HHhccHhhcCCCCCceeeECCEE
Confidence 367889999999999988 67999999999999999 7999999988755 66688999999999999999999
Q ss_pred eecchHHHhHHHhCCchHHHHhcC
Q 042938 75 VGGPNQVMSLHVQNELGPLLVRAG 98 (106)
Q Consensus 75 iGg~~~~~~~~~~g~L~~~L~~~g 98 (106)
|||+|-+.+|+++|+|+++|++++
T Consensus 82 vGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 82 VGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred eccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999998875
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.91 E-value=2.9e-24 Score=139.42 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=73.3
Q ss_pred CEEEEEcC------CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC----CCCccEEEECCeEeecchHH
Q 042938 12 PVVIFSKS------ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC----QPTVPAVFIGQRLVGGPNQV 81 (106)
Q Consensus 12 ~v~vf~~~------~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~----~~tvP~ifv~g~~iGg~~~~ 81 (106)
+|+||+++ +||+|.+++.+|++++++|+++||+.+++.. +.|.+..+ ..++|+|||+|++|||+|++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~---~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFR---EELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 9999999999999999999999999875433 34444433 58999999999999999999
Q ss_pred HhHHHhCCchHHHHhcC
Q 042938 82 MSLHVQNELGPLLVRAG 98 (106)
Q Consensus 82 ~~~~~~g~L~~~L~~~g 98 (106)
.+++++|+|.++|+++.
T Consensus 78 ~~L~e~G~L~~lL~~~~ 94 (147)
T cd03031 78 LRLNESGELRKLLKGIR 94 (147)
T ss_pred HHHHHcCCHHHHHhhcc
Confidence 99999999999999863
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.91 E-value=1.7e-23 Score=121.24 Aligned_cols=74 Identities=24% Similarity=0.470 Sum_probs=63.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCC-CccEEEECCeEeecchHHHhHHHhC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQP-TVPAVFIGQRLVGGPNQVMSLHVQN 88 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~-tvP~ifv~g~~iGg~~~~~~~~~~g 88 (106)
+|++|++++||+|.+++.+|++++++|+++||+.+++ .++.+.+.++.. ++|+||+||+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~---~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA---LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 5899999999999999999999999999999997633 223444444445 9999999999999999999999887
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.89 E-value=3.7e-23 Score=119.73 Aligned_cols=72 Identities=25% Similarity=0.455 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
.+|++|+.++||+|.+++.+|++.|++|+.+|++.++... +.+.+.++..++|+||+||++|||++++.+++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~---~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERK---AELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 3689999999999999999999999999999999876533 45666666789999999999999999999875
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.89 E-value=7.9e-23 Score=120.18 Aligned_cols=74 Identities=27% Similarity=0.489 Sum_probs=64.0
Q ss_pred hhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 7 MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 7 ~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+-++++|++|++++||+|.+++++|++.|++|+++|++.+++.. .+...++..++|+||+||++|||++++.+.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 45678999999999999999999999999999999998765543 334456679999999999999999999875
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.88 E-value=1.7e-22 Score=116.56 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=61.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+|++|++++||+|.+++++|++.+++|+++|++.++.. +.+...++..++|+||+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 68999999999999999999999999999999987632 24455577799999999999999999998763
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.88 E-value=3.6e-22 Score=147.84 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHH-----HhCCCCCccEEEECCeEeecchHHHhH
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQ-----QLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~-----~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+.+|+||++++||+|.+++++|++.|++|+++||+.++...++.+... ..++.+|||+|||||++|||++++..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~- 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA- 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH-
Confidence 357999999999999999999999999999999997776555333322 22467899999999999999999987
Q ss_pred HHhCCchHHHHhcCcee
Q 042938 85 HVQNELGPLLVRAGAIW 101 (106)
Q Consensus 85 ~~~g~L~~~L~~~g~~~ 101 (106)
.+|+|.++|++.|...
T Consensus 80 -~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 80 -RAGEVIARVKGSSLTT 95 (410)
T ss_pred -HhCCHHHHhcCCcccc
Confidence 8999999999988743
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.87 E-value=9.9e-22 Score=117.27 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=58.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCC--CCccEEEECCeEeecchHHHhHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQ--PTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~--~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
|+||++++||+|.+++++|++++ ++|+.+|++.+.... +.+...++. .+||+||+||+++||++++.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~---~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISK---ADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 79999999999999999999985 567888887543212 234444554 79999999999999999999987
Q ss_pred HhC
Q 042938 86 VQN 88 (106)
Q Consensus 86 ~~g 88 (106)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.86 E-value=2e-21 Score=115.50 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHhh-----cCCCceEEEcccCCCchHHHHHHHHhCCC--CCccEEEECCeEeecchHHHhH
Q 042938 12 PVVIFSKSECCICFSIQTLICG-----FGANPTVYELDQIPNGPQIERALQQLGCQ--PTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~--~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+|++|++++||+|.+++++|++ .+++|+.+|++.++...+ .+....+. .++|+||+||++|||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~---el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKA---DLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHH---HHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 789999999997543222 33444433 7999999999999999999998
Q ss_pred HHh
Q 042938 85 HVQ 87 (106)
Q Consensus 85 ~~~ 87 (106)
.++
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 754
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.84 E-value=2e-20 Score=106.28 Aligned_cols=71 Identities=31% Similarity=0.565 Sum_probs=63.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+|++|++++||+|.+++.+|++++++|..+|++.+++ ..+.+.+.++..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 6899999999999999999999999999999987765 3346666677799999999999999999998875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.4e-20 Score=124.68 Aligned_cols=92 Identities=22% Similarity=0.452 Sum_probs=85.0
Q ss_pred HHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938 3 MVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG 77 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg 77 (106)
.+.++++.++|++|.+ |.|.+++++..+|++.|++|..+||-.+++ +++.++.++.++|+||+||+|+++||
T Consensus 131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCccceeECCEeccC
Confidence 5678889999999988 669999999999999999999999998876 66689999999999999999999999
Q ss_pred chHHHhHHHhCCchHHHHhc
Q 042938 78 PNQVMSLHVQNELGPLLVRA 97 (106)
Q Consensus 78 ~~~~~~~~~~g~L~~~L~~~ 97 (106)
+|-+.+|+++|+|...|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999999864
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.81 E-value=1.9e-19 Score=108.65 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=66.7
Q ss_pred EEEEEcCC------CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC----CCCCccEEEECCeEeecchHHH
Q 042938 13 VVIFSKSE------CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG----CQPTVPAVFIGQRLVGGPNQVM 82 (106)
Q Consensus 13 v~vf~~~~------Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~----~~~tvP~ifv~g~~iGg~~~~~ 82 (106)
|+||+++- =..|.+++.+|+.++++|+++||+.+++..+ .+.+.+ +.+++|+||+||++|||+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~---em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQ---WMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHH---HHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 56776644 3478899999999999999999998766544 444443 3589999999999999999999
Q ss_pred hHHHhCCchHHHH
Q 042938 83 SLHVQNELGPLLV 95 (106)
Q Consensus 83 ~~~~~g~L~~~L~ 95 (106)
+++++|+|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999885
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.80 E-value=1.9e-19 Score=100.44 Aligned_cols=60 Identities=25% Similarity=0.453 Sum_probs=53.1
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i 75 (106)
|++|++++||+|.+++++|++.|++|+.+||+.+++ .++.+.+.++..++|+||+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~---~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEE---AREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHH---HHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchh---HHHHHHHHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999999863 344666665679999999999986
No 26
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.75 E-value=5.4e-18 Score=100.17 Aligned_cols=64 Identities=17% Similarity=0.420 Sum_probs=55.6
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~ 79 (106)
+|++|++++||+|.+++.+|++.|++|+++||+.+++..+ .+.. .+..++|+|+++|..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCCCCcCEEEECCEEEecCC
Confidence 6899999999999999999999999999999998764333 4444 45689999999999999996
No 27
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.75 E-value=3.5e-18 Score=98.58 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=54.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe-EeecchH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR-LVGGPNQ 80 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~-~iGg~~~ 80 (106)
|++|++++||+|.+++++|++.|++|+++||+.++... +.+... +..++|+|+++|. ++||++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~---~~~~~~-g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAI---DYVKAQ-GFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHHc-CCcccCEEEECCCcEEeccCH
Confidence 58999999999999999999999999999999876543 355544 5589999999775 9999963
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.61 E-value=3.7e-15 Score=84.82 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=53.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~ 79 (106)
+|++|+.++||+|++++.+|++.+++|..+|++.++...+ +.++. .+..++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~--~~~~~-~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAARE--EVLKV-LGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHH--HHHHH-hCCCcccEEEECCEEEeeCC
Confidence 4899999999999999999999999999999987654322 33333 45589999999999998875
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.58 E-value=1.3e-14 Score=82.47 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
++++|+.++||+|.+++.+|++.+++|..++++.++.. .+.+...++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~---~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEA---LEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHH---HHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 48999999999999999999999999999999875432 2345555566899999999999999874
No 30
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.2e-15 Score=103.80 Aligned_cols=89 Identities=20% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCCEEEEEc------CCCchHHHHHHHHhhcCCCceEEEcccCCCch-HHHHHHHHhCCCCCccEEEECCeEeecchHHH
Q 042938 10 EKPVVIFSK------SECCICFSIQTLICGFGANPTVYELDQIPNGP-QIERALQQLGCQPTVPAVFIGQRLVGGPNQVM 82 (106)
Q Consensus 10 ~~~v~vf~~------~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~-~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~ 82 (106)
...|+||++ .+.-.|..++.+|+..+|.|.+.||..+.... ++++.+.......+.|+|||+|++|||.++++
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 346999987 45889999999999999999999999987654 36666655334689999999999999999999
Q ss_pred hHHHhCCchHHHHhcC
Q 042938 83 SLHVQNELGPLLVRAG 98 (106)
Q Consensus 83 ~~~~~g~L~~~L~~~g 98 (106)
+|++.|+|.++|++.-
T Consensus 210 ~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhhcchHHHHHhcCC
Confidence 9999999999998764
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.54 E-value=3.5e-14 Score=81.87 Aligned_cols=65 Identities=14% Similarity=0.318 Sum_probs=52.4
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC-CCCCccEEEE-CCeEeecch
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG-CQPTVPAVFI-GQRLVGGPN 79 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~-~~~tvP~ifv-~g~~iGg~~ 79 (106)
+|++|+.++||+|.+++.+|++.+++|..+|++.++...+ .+...+ +..++|++++ ||+.+...+
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~---~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAAD---RVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHH---HHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4899999999999999999999999999999987765433 444444 6689999976 667776554
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.46 E-value=3e-13 Score=76.43 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=45.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938 12 PVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG 76 (106)
.|++|++++||+|.+++++|+++ ++++..+|++.+++ ...+ .+..++|++++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~------l~~~-~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD------LADE-YGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh------HHHH-cCCcccCEEEECCEEEE
Confidence 58999999999999999999876 57777788776543 2222 44589999999998775
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.40 E-value=2.1e-12 Score=78.73 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=57.9
Q ss_pred CEEEEEcCCCc------hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh---------CCCCCccEEEECCeEee
Q 042938 12 PVVIFSKSECC------ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL---------GCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 12 ~v~vf~~~~Cp------~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~---------~~~~tvP~ifv~g~~iG 76 (106)
.|.||+++.-. .+.++..+|+.++++|+.+||..+++.++ .+.+. ++..-.|+||+|++++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 46778765533 46688899999999999999998666544 33332 24456689999999999
Q ss_pred cchHHHhHHHhCCchHHHH
Q 042938 77 GPNQVMSLHVQNELGPLLV 95 (106)
Q Consensus 77 g~~~~~~~~~~g~L~~~L~ 95 (106)
+++++.++.++++|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999885
No 34
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.27 E-value=5.7e-11 Score=69.06 Aligned_cols=70 Identities=7% Similarity=0.105 Sum_probs=54.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEeecchHHHhHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVGGPNQVMSLH 85 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iGg~~~~~~~~ 85 (106)
+++|+.+.||+|.+++.+|.++|++|+.++++..+... +.+...++..++|++.. +|..+.+...+.+..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~---~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKR---DKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHH---HHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 68999999999999999999999999999997543222 23445566789999987 367788887776654
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.25 E-value=1e-10 Score=65.08 Aligned_cols=68 Identities=9% Similarity=0.048 Sum_probs=56.5
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
++|+.++||+|.+++.+|+..+++|+.++++..+.... .+...++..++|.++.+|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999987655443 244456678999999999999988776553
No 36
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.20 E-value=1.3e-10 Score=66.22 Aligned_cols=67 Identities=7% Similarity=0.117 Sum_probs=53.7
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhHH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSLH 85 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~~ 85 (106)
.+|+.+.||+|.+++.+|..+|++|+.+.++..+.. . .+ +.++..++|+++.+ |..+++...+.+..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~---~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T---PI-RMIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H---HH-HhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 589999999999999999999999999988854321 1 22 23555799999987 88999998887653
No 37
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.17 E-value=4.6e-10 Score=64.87 Aligned_cols=67 Identities=12% Similarity=0.316 Sum_probs=53.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC----CeEeecchHHHhH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG----QRLVGGPNQVMSL 84 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~----g~~iGg~~~~~~~ 84 (106)
++.+|+.+.||+|.+++.+|..+|++|+.++++... ..+ +. .++..++|+++.+ |..+.....+.+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~~----~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RKE----IK-WSSYKKVPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HHH----HH-HhCCCccCEEEECCCCCccEEEcHHHHHHH
Confidence 578999999999999999999999999999886432 112 22 2556899999987 7788887777654
No 38
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.15 E-value=1.4e-10 Score=69.45 Aligned_cols=68 Identities=15% Similarity=0.316 Sum_probs=50.7
Q ss_pred hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG 76 (106)
+.++++-+.-.|.+|+.++||+|..+.+++++. ++++..+|++..++ ...+++ ..++|.+++||+.++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e------~a~~~~-V~~vPt~vidG~~~~ 77 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD------EVEERG-IMSVPAIFLNGELFG 77 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH------HHHHcC-CccCCEEEECCEEEE
Confidence 345555555579999999999999999888665 57788888886542 223334 489999999997654
No 39
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.10 E-value=1.7e-09 Score=61.66 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=53.8
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+++|+.+.||+|.+++.+|...|++|+.++++......+ +.+.+...++|++..||..+.....+...
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~----~~~~~p~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPED----LAELNPYGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHH----HHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 478999999999999999999999999998886543332 33446668999998888877777666554
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.09 E-value=1.9e-09 Score=61.54 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=52.8
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHh
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMS 83 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~ 83 (106)
++|+.++||+|.+++.+|.++|++|+.++++...... .+.+.+...++|++..+ |..+.....+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 6899999999999999999999999999988754333 33345667899999986 887776665544
No 41
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.04 E-value=2.5e-09 Score=62.10 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=38.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938 12 PVVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR 73 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~ 73 (106)
.|++|+++|||+|..++..|++ .+..+....||.+.+.. ...+ .+..++|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~-~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAME-YGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHH-cCCccCCEEEECCE
Confidence 5789999999999999999865 34334434444333222 2223 34588999999996
No 42
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.01 E-value=6.1e-09 Score=62.09 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhH
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSL 84 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~ 84 (106)
...+++|+.+.||+|.+++.+|...|++|+.++++..... +.+.+.+...++|++.++ |..+.....+...
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 3468999999999999999999999999999988764322 234445667899999998 7888777666543
No 43
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.99 E-value=6.5e-09 Score=65.59 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=51.2
Q ss_pred HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCC--Cc---hHHHHHHHHhC---CCCCccEE
Q 042938 3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICG----FGANPTVYELDQIP--NG---PQIERALQQLG---CQPTVPAV 68 (106)
Q Consensus 3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~--~~---~~~~~~l~~~~---~~~tvP~i 68 (106)
.+.+.++.+. ++.|+++|||+|+.+...|.+ .++++-.+|+|.+. +. .++.+....++ +..++|++
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 4566666544 777999999999998877755 45778889998653 21 24555555543 23458886
Q ss_pred --EECCeEeecc
Q 042938 69 --FIGQRLVGGP 78 (106)
Q Consensus 69 --fv~g~~iGg~ 78 (106)
|.+|+.++..
T Consensus 95 v~~k~Gk~v~~~ 106 (122)
T TIGR01295 95 VHITDGKQVSVR 106 (122)
T ss_pred EEEeCCeEEEEE
Confidence 6789766544
No 44
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.98 E-value=4.1e-09 Score=59.91 Aligned_cols=70 Identities=7% Similarity=0.104 Sum_probs=51.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~ 83 (106)
+.+|+.+.||+|.+++.+|..++++|+.+.++.......- +.+.+.+...++|++.+ ||..+.....+..
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~-~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRS-PEFLAKNPAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCC-HHHHhhCCCCCCCEEEeCCCCEEecHHHHHH
Confidence 3689999999999999999999999999888754321111 23445577789999987 6666666655544
No 45
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.96 E-value=1.3e-08 Score=58.17 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=53.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+.+|+.+.||+|.+++.+|...|++|+.++++...... ..+.+.+.+...++|.+..+|..+.....+...
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEH-LKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCc-CCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 46899999999999999999999999999887533211 112344556668999999988777766655543
No 46
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.96 E-value=2.2e-09 Score=62.40 Aligned_cols=54 Identities=17% Similarity=0.428 Sum_probs=40.0
Q ss_pred EEEEEcCCCchHHHH----HHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938 13 VVIFSKSECCICFSI----QTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~----~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i 75 (106)
|.+|+ +|||+|..+ ++++++++.+++.++|+.. .+ +.+++ ..++|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~---~~----a~~~~-v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM---NE----ILEAG-VTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH---HH----HHHcC-CCcCCEEEECCEEE
Confidence 55665 999999999 5567778888888888831 12 22334 58999999999654
No 47
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.95 E-value=2.4e-09 Score=65.71 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=39.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~ 60 (106)
|+||++++||+|++++.+|++.|++|+++|+..++. ..++.+.+...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 579999999999999999999999999999987654 445666654433
No 48
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.94 E-value=2.2e-09 Score=66.69 Aligned_cols=47 Identities=13% Similarity=0.355 Sum_probs=39.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~ 59 (106)
|+||+.++||+|++++++|++.|++|+++|+..++.. .++.+.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence 5799999999999999999999999999999887654 4466655543
No 49
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.94 E-value=8.1e-09 Score=65.98 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=38.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~ 59 (106)
|+||+.++||+|++++++|++.|++|+.+|+..++.. .++.+.++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 7899999999999999999999999999999776543 4455555543
No 50
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.90 E-value=1.6e-08 Score=58.35 Aligned_cols=67 Identities=9% Similarity=0.136 Sum_probs=56.3
Q ss_pred EEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 15 IFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+|+.++||+|.+++-+|...|++|+.++++...... .+...+...++|++..||..+.+...+.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~----~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRP----EFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSH----HHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchh----HHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence 689999999999999999999999999998665422 3444567789999999999999998887654
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.88 E-value=3.3e-08 Score=56.08 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=53.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
+++|+.+.||+|.+++.+|...|++|+.++++...... ..+.+.+.+...++|.+..+|..+.....+..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGET-RTPEFLALNPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCccc-CCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 36899999999999999999999999999887532211 11233445666899999999988877666554
No 52
>PHA02125 thioredoxin-like protein
Probab=98.88 E-value=1.4e-08 Score=58.73 Aligned_cols=55 Identities=11% Similarity=0.270 Sum_probs=39.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i 75 (106)
|++|+.+|||+|+.++.+|++. .+..++||.++.. + ...+ .+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-~---l~~~-~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-E---LTAK-HHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-H---HHHH-cCCceeCeEE-CCEEE
Confidence 7899999999999999999865 4566677655432 2 3333 3458999987 67544
No 53
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.83 E-value=4.1e-08 Score=61.27 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=39.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~ 59 (106)
|++|+.++||+|++++.+|++.|++|+.+|+..++ +..++.+.++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence 78999999999999999999999999999997654 445566666554
No 54
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.81 E-value=5.3e-08 Score=62.31 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=38.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~ 59 (106)
|+||+.++|+.|++++++|++.|++|+++|+..++- .+++.+.++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 789999999999999999999999999999976543 34455555543
No 55
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.80 E-value=4.9e-08 Score=57.32 Aligned_cols=53 Identities=13% Similarity=0.362 Sum_probs=38.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
++++|++++|+.|..++..|.+.. ++++.+||+.++. ...+ .+ ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~------l~~~-Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE------LFEK-YG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH------HHHH-SC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH------HHHH-hc-CCCCEEEEcC
Confidence 489999999999999999998754 4466777774332 2223 43 6899999999
No 56
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.78 E-value=1.6e-08 Score=63.26 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=39.9
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHhC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~~ 60 (106)
|++|+.++||+|++++++|++.|++|+.+|+..++.. .++.+.++..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 5799999999999999999999999999999876554 44666665544
No 57
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.77 E-value=5.1e-08 Score=60.07 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=40.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
|+||+.|+|+.|++++++|++.|++|+++|+..+ +..+++.+.+...+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 5799999999999999999999999999999775 45555666665443
No 58
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.77 E-value=8e-08 Score=61.42 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=38.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQ 58 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~ 58 (106)
|+||+.++|+.|++++++|++.|++|+.+|+..++ ..+++.+.++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 78999999999999999999999999999997654 44456666554
No 59
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.72 E-value=5.1e-08 Score=60.60 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=39.2
Q ss_pred HhhhhCCCEEEE-EcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 5 TRMVNEKPVVIF-SKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 5 ~~~~~~~~v~vf-~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
+.+.....+++| +.+|||+|..++++|++.. +++..+|+|..+ + ...+ .+..++|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~---~---l~~~-~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK---E---KAEK-YGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH---H---HHHH-cCCCcCCEEEE
Confidence 334444556555 7899999999999997764 345666666532 2 2223 34589999977
No 60
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.69 E-value=3.6e-07 Score=52.27 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=51.9
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC-CCCccEEEECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC-QPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+.+|+.+.||+|.+++.+|...|++|+.++++......+ +.+.+. ..++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~----~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSEL----LLASNPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHH----HHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence 468999999999999999999999999988776432222 233454 37999999888877777666554
No 61
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.67 E-value=3.9e-07 Score=52.20 Aligned_cols=72 Identities=7% Similarity=-0.004 Sum_probs=55.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+++|+.+.||+|.+++-+|...|++|+.+.++..... ...+.+.+.+...++|.+..+|..+.....+....
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5789999999999999999999999999888764221 11123445577789999999988888777666543
No 62
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.66 E-value=2.8e-07 Score=52.49 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=47.1
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+.||+|.+++.+|...|++|+.++++... .+...++|++..+|+.+.++..+....
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL 69 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYL 69 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHH
Confidence 47999999999999999999999887532 244568999999999999988776654
No 63
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.65 E-value=3.3e-07 Score=55.17 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
..||||++++-.|.++|++|+.+++|.....++ +.+.+....+|++..+|..+...+.+.+..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~----~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPED----LKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHH----HHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 459999999999999999999999987654433 344466689999999999888887776653
No 64
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.64 E-value=3.8e-07 Score=52.43 Aligned_cols=70 Identities=16% Similarity=0.294 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
+++|..+.||+|.+++-+|.++|++|+.++++....... .+.+.+.+...++|.+..||..+.....+..
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~-~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHN-EPWFMRLNPTGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccC-CHHHHHhCcCCCCCEEEECCEEEEcHHHHHH
Confidence 468999999999999999999999999998876432111 1234556777899999999988877766654
No 65
>PHA02278 thioredoxin-like protein
Probab=98.61 E-value=5.4e-07 Score=55.29 Aligned_cols=71 Identities=17% Similarity=0.328 Sum_probs=44.3
Q ss_pred HHHhhhhCC-C-EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 3 MVTRMVNEK-P-VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 3 ~~~~~~~~~-~-v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
.+.+.++.. + ++-|+.+||+.|+.+.+.|++.. +++..+|+|.++.... +...++. ..++|++ |-||
T Consensus 6 ~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~--~l~~~~~-I~~iPT~i~fk~G 82 (103)
T PHA02278 6 DLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDRE--KAVKLFD-IMSTPVLIGYKDG 82 (103)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccH--HHHHHCC-CccccEEEEEECC
Confidence 455555533 3 45589999999999998886642 3466677776532111 1222334 4788886 6788
Q ss_pred eEee
Q 042938 73 RLVG 76 (106)
Q Consensus 73 ~~iG 76 (106)
+.++
T Consensus 83 ~~v~ 86 (103)
T PHA02278 83 QLVK 86 (103)
T ss_pred EEEE
Confidence 7653
No 66
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.61 E-value=1.7e-07 Score=58.54 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=40.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHh
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQL 59 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~ 59 (106)
.|++|+.|.|+.|++++++|++.|++|+++|+-.+ ++..++.+.++..
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence 47899999999999999999999999999998665 4556666666643
No 67
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.59 E-value=7.5e-07 Score=50.73 Aligned_cols=67 Identities=4% Similarity=0.078 Sum_probs=51.1
Q ss_pred EEEEEcCCCchHHHHHHHHhh--cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICG--FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~--~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~ 83 (106)
+.+|+.+.||+|.+++-+|.. .|++|+.+.++......+ + ...+...++|.+.. ||..+.....+..
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~---~-~~~~p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDES---L-LAVNPLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChH---H-HHhCCCCCCCEEEECCCCEEECHHHHHh
Confidence 368999999999999999999 889999999885433333 2 33466689999975 7777777665544
No 68
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.58 E-value=4.5e-07 Score=56.68 Aligned_cols=67 Identities=16% Similarity=0.319 Sum_probs=43.8
Q ss_pred HHHhhhh--CCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938 3 MVTRMVN--EKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI 70 (106)
Q Consensus 3 ~~~~~~~--~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv 70 (106)
.+.+.+. ..+ |+-|+.+|||.|+.+...|+++. +.+-.+|+|..++. ..+++ ..++|++ |-
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l------a~~~~-V~~iPTf~~fk 76 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF------NKMYE-LYDPPTVMFFF 76 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH------HHHcC-CCCCCEEEEEE
Confidence 4555564 233 44499999999999999886653 34556677765532 22224 4788886 67
Q ss_pred CCeEee
Q 042938 71 GQRLVG 76 (106)
Q Consensus 71 ~g~~iG 76 (106)
+|+.++
T Consensus 77 ~G~~v~ 82 (114)
T cd02954 77 RNKHMK 82 (114)
T ss_pred CCEEEE
Confidence 887664
No 69
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.58 E-value=4.8e-08 Score=74.51 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCC-----ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFGAN-----PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~-----~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG 76 (106)
.++++-+...|.+|.+++||||..+...++++.+. .+.+|....+ +...+++. .+||.+|+||+.++
T Consensus 111 ~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~------~~~~~~~v-~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 111 RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ------DEVEALGI-QGVPAVFLNGEEFH 182 (515)
T ss_pred HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH------HHHHhcCC-cccCEEEECCcEEE
Confidence 34554455678999999999999999998776543 3333333222 34445555 79999999997654
No 70
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.58 E-value=5.2e-08 Score=74.31 Aligned_cols=67 Identities=12% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCC-----CceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFGA-----NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG 76 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v-----~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG 76 (106)
.++++-+...|.+|.+++||||..+...+++..+ +.+.+|....++ ...+++. .+||++|+||+.+.
T Consensus 110 ~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~------~~~~~~v-~~VP~~~i~~~~~~ 181 (517)
T PRK15317 110 QIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD------EVEARNI-MAVPTVFLNGEEFG 181 (517)
T ss_pred HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh------HHHhcCC-cccCEEEECCcEEE
Confidence 4555555667899999999999999998877643 344444443332 4444454 79999999997553
No 71
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.55 E-value=6.7e-07 Score=54.23 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=38.4
Q ss_pred HHHhhhhCCC--EEEEEcCCCchHHHHHHHH-------hhc--CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 3 MVTRMVNEKP--VVIFSKSECCICFSIQTLI-------CGF--GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L-------~~~--~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
.+.++++.++ ++.|+.+|||+|.+....+ ..+ ++.+-.+|++.++. ...+...+++ ..++|+++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~--~~~~~~~~~~-i~~~Pti~ 77 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP--EITALLKRFG-VFGPPTYL 77 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH--HHHHHHHHcC-CCCCCEEE
Confidence 4566676666 5669999999999987554 112 23333445544332 2234444545 48899874
No 72
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.51 E-value=1.7e-07 Score=54.29 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=36.4
Q ss_pred CEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938 12 PVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL 74 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~ 74 (106)
+|.+ ..++||+|..+.+++ .+.+++++.+++ .+..+ . .+++ ..++|.+++||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~---~-~~yg-v~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEE---I-EKYG-VMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHH---H-HHTT--SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHH---H-HHcC-CCCCCEEEECCEE
Confidence 3566 466799999777655 556777777665 23333 3 4445 4999999999974
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.50 E-value=3.7e-07 Score=62.52 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=37.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
.|++|+.+|||+|..++.+++++. +.+..+|++..++ ...+ .+..++|++++++
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~------~~~~-~~V~~vPtl~i~~ 194 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD------LAEK-YGVMSVPKIVINK 194 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH------HHHH-hCCccCCEEEEec
Confidence 467799999999999999887753 3444455554332 2222 3458999998875
No 74
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.50 E-value=2.3e-06 Score=48.92 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=54.4
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
++++|+.+.|+.|.+++-+|...|++|+.+.++.. ...+.+...+...++|++..||..+.+...+...
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 46789999999999999999999999999988752 1122344556668999999999888887766654
No 75
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.47 E-value=1.7e-06 Score=48.97 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=52.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
+++|+.+.||.|.+++.+|...|++|+.+.++..+.... .+.+.+.+...++|++..+|..+.....+..
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQL-SPAYRALNPQGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcC-ChHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 368889999999999999999999999988876432111 1233445667899999999888777665544
No 76
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3e-07 Score=55.58 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=65.8
Q ss_pred CEEEEEcCCCchHH------HHHHHHhhcCCCceEEEcccCCCchH-----HHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 12 PVVIFSKSECCICF------SIQTLICGFGANPTVYELDQIPNGPQ-----IERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~------~~~~~L~~~~v~~~~v~vd~~~~~~~-----~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
.|.+|+++.-+.-. ++..+|+...+.+..+||...++.+. +.+..+..+|.+..|+||-++++.|+++.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 56777776655432 56688899999999999988766544 22333334667899999999999999999
Q ss_pred HHhHHHhCCchHHHHhc
Q 042938 81 VMSLHVQNELGPLLVRA 97 (106)
Q Consensus 81 ~~~~~~~g~L~~~L~~~ 97 (106)
+.+..+++.|.+.|+-+
T Consensus 83 F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLA 99 (108)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 99999999999988643
No 77
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.43 E-value=2.2e-06 Score=53.25 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=43.2
Q ss_pred HHHhhhhCC-C-EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938 3 MVTRMVNEK-P-VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR 73 (106)
Q Consensus 3 ~~~~~~~~~-~-v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~ 73 (106)
.+.+.++.. . ++.|+.+||+.|+.+...|.++ ++.+..+|++..++ ...+++ ..++|++ |-+|+
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~------l~~~~~-v~~vPt~l~fk~G~ 86 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF------LVEKLN-IKVLPTVILFKNGK 86 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH------HHHHCC-CccCCEEEEEECCE
Confidence 345555443 3 4568999999999999888664 34455555555432 223334 4788886 67897
Q ss_pred Eeec
Q 042938 74 LVGG 77 (106)
Q Consensus 74 ~iGg 77 (106)
.++-
T Consensus 87 ~v~~ 90 (113)
T cd02989 87 TVDR 90 (113)
T ss_pred EEEE
Confidence 6643
No 78
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.42 E-value=2.6e-06 Score=49.20 Aligned_cols=56 Identities=20% Similarity=0.318 Sum_probs=39.5
Q ss_pred EEEEEcCCCchHHHHHHHHhh-----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938 13 VVIFSKSECCICFSIQTLICG-----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i 75 (106)
+++|++++|++|..+.+.+.+ .++.+..+|.+..+. ....++ ...+|++++ +|+.+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE------LAEEYG-VRSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh------HHHhcC-cccccEEEEEECCEEE
Confidence 677999999999999999977 556666677665332 233334 378998765 77644
No 79
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.42 E-value=1e-06 Score=50.20 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHHH
Q 042938 20 ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLHV 86 (106)
Q Consensus 20 ~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~~ 86 (106)
.||||.+++-+|..+|++|+...++..+....-.+.+.+.++..+||.+.. +|..+.....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 499999999999999999998777432222111123445577789999997 8899888887776543
No 80
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.40 E-value=3.9e-06 Score=48.21 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=49.8
Q ss_pred EEEEEcC-------CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 13 VVIFSKS-------ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 13 v~vf~~~-------~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+++|..+ .||+|.+++.+|...|++|+.++++.. ..+...++|.+..+|+.+.+...+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4677776 579999999999999999998887642 2255678999999999988887776643
No 81
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.39 E-value=6.2e-07 Score=69.06 Aligned_cols=65 Identities=12% Similarity=0.305 Sum_probs=46.3
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHHhh----c-CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLICG----F-GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL 74 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~----~-~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~ 74 (106)
.++++-+...|.+|..++||+|.++.+.+++ . +++.+.+|+...++ ...+++ ..+||.+++||+.
T Consensus 470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~------~~~~~~-v~~vP~~~i~~~~ 539 (555)
T TIGR03143 470 KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD------LKDEYG-IMSVPAIVVDDQQ 539 (555)
T ss_pred HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH------HHHhCC-ceecCEEEECCEE
Confidence 3444434556899999999999988776644 3 57778888776643 333444 4899999999963
No 82
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.38 E-value=3.2e-06 Score=51.45 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=42.9
Q ss_pred hHHHhhhhC--CC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938 2 DMVTRMVNE--KP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI 70 (106)
Q Consensus 2 ~~~~~~~~~--~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv 70 (106)
+.+.+.++. ++ ++.|+.+||+.|+.....|.++ ++.+-.+|+|.++. ..+...+++ ...+|++ |-
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~---~~~l~~~~~-V~~~Pt~~~~~ 79 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS---TMELCRREK-IIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH---HHHHHHHcC-CCcCCEEEEEe
Confidence 345565643 23 4559999999999998888664 34444555555432 223444444 4788875 45
Q ss_pred CCeEe
Q 042938 71 GQRLV 75 (106)
Q Consensus 71 ~g~~i 75 (106)
+|+.+
T Consensus 80 ~G~~v 84 (103)
T cd02985 80 DGEKI 84 (103)
T ss_pred CCeEE
Confidence 88654
No 83
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.37 E-value=3.3e-06 Score=47.93 Aligned_cols=69 Identities=10% Similarity=-0.039 Sum_probs=52.9
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+++|..+.|+.|.+++-+|...|++|+.+.++...... ..+...+...++|.+..+|..+.....+...
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~---~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE---LDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh---hhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 36888899999999999999999999999887532111 1234456678999999999888777665543
No 84
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.37 E-value=9.1e-06 Score=47.12 Aligned_cols=68 Identities=9% Similarity=0.158 Sum_probs=51.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEEEC---CeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVFIG---QRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv~---g~~iGg~~~~~~~ 84 (106)
+++|+.+. |+|.+++.+|...|++|+.+.++... ...+ .+.+.+...++|.+..+ |..+.....+...
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~---~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKP---EFLKINPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCH---HHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 57898886 99999999999999999988887532 2222 33345666899999887 7777776666554
No 85
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.37 E-value=2.6e-06 Score=49.90 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhHH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSLH 85 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~~ 85 (106)
++||+|.+++.+|...|++|+.+.++..... .....+ ..+...++|.+..+ |..+.+...+....
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 6799999999999999999999888754221 222233 44666899999988 88888887776653
No 86
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.2e-06 Score=62.54 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=46.6
Q ss_pred hCCCE-EEEEcCCCchHHHHHHHHhhcC----CC--ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecch
Q 042938 9 NEKPV-VIFSKSECCICFSIQTLICGFG----AN--PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPN 79 (106)
Q Consensus 9 ~~~~v-~vf~~~~Cp~C~~~~~~L~~~~----v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~ 79 (106)
...|| |.|+.|||+.|......|+..- -. .-.+|+|.++.-. .+++ ..++|+| |++|++|-||-
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA------aqfg-iqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA------AQFG-VQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH------HHhC-cCcCCeEEEeeCCcCccccC
Confidence 34455 5689999999999999997753 23 3456777766522 2335 4899987 79999998885
Q ss_pred H
Q 042938 80 Q 80 (106)
Q Consensus 80 ~ 80 (106)
-
T Consensus 115 G 115 (304)
T COG3118 115 G 115 (304)
T ss_pred C
Confidence 3
No 87
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.35 E-value=3.2e-06 Score=57.54 Aligned_cols=68 Identities=9% Similarity=0.048 Sum_probs=53.1
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~ 86 (106)
++|+.+.||+|.+++-+|..+|++|+.++++..+.. . . .+.+...++|++. .||..+.+...+.....
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~---~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T---P-IRMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-h---H-HHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 368899999999999999999999999887654321 1 2 2335567999997 78889999888877544
No 88
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.34 E-value=6.3e-06 Score=47.27 Aligned_cols=68 Identities=9% Similarity=-0.050 Sum_probs=50.9
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHh
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMS 83 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~ 83 (106)
++|+.+.||+|.+++-+|...|++|+.++++....... +.+.+.+...++|++..+ |..+.....+.+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~--~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKT--PEFLKKFPLGKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCC--HHHHHhCCCCCCCEEEcCCCCEEeeHHHHHH
Confidence 47899999999999999999999999998886532211 234455777899999984 766665554444
No 89
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.34 E-value=2.3e-06 Score=60.86 Aligned_cols=68 Identities=18% Similarity=0.374 Sum_probs=54.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
++++|--.+||+|-+++.+|+-.+++|..++|+.... + .+ +.+....||.+.+.|+.+-...-++++.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r--~---eI-k~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR--Q---EI-KWSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh--h---hc-cccccccccEEEeccceechhHHHHHHH
Confidence 6899999999999999999999999999999986432 1 11 2355689999999998777777666654
No 90
>PRK09381 trxA thioredoxin; Provisional
Probab=98.33 E-value=2.6e-06 Score=51.98 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=38.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP 78 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~ 78 (106)
++.|+.+|||+|..+...|++. + +.+-.+|++..+. ...+++ ..++|++ |-+|+.++.+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~------~~~~~~-v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG------TAPKYG-IRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh------HHHhCC-CCcCCEEEEEeCCeEEEEe
Confidence 5668999999999998777653 2 3344555554432 222334 4889987 4588876543
No 91
>PRK10387 glutaredoxin 2; Provisional
Probab=98.32 E-value=4.1e-06 Score=56.45 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=52.9
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE-EECCeEeecchHHHhHHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-FIGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-fv~g~~iGg~~~~~~~~~ 86 (106)
+++|+.+.||+|.+++-+|..+|++|+.++++..+... .+ ..++..+||++ ..||..+.....+....+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~----~~-~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT----PI-RMIGQKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh----HH-HhcCCcccceEEecCCeEecCHHHHHHHHH
Confidence 46899999999999999999999999999886543211 12 23555799999 567888888877766543
No 92
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.31 E-value=8.5e-06 Score=55.31 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
...+++|+.+.||+|.+++-+|.++|++|+.+.++...... .+.+.+...+||++..||..+-...-+..
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~~~~nP~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQ----DLIDLNPYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCH----HHHHhCCCCCCCEEEECCEEeeCHHHHHH
Confidence 33588999999999999999999999999999988643222 23345666899999999887766665554
No 93
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.31 E-value=8.9e-06 Score=50.24 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=41.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~ 84 (106)
++.|+.+||+.|+.+...|+++ ++.|-.+|++.. + ...+++ ..++|++ |.+|+.++.......+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~----~---l~~~~~-i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA----F---LVNYLD-IKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh----H---HHHhcC-CCcCCEEEEEECCEEEEEEecHHHh
Confidence 4569999999999999888664 234444555433 2 222334 4788876 7799877655444333
No 94
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.30 E-value=2.2e-06 Score=45.53 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=39.7
Q ss_pred EEEEEcCCCchHHHHHHHHh-----hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938 13 VVIFSKSECCICFSIQTLIC-----GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~-----~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
+++|+.++||+|.++...+. ..++.+..++++....... .... ....++|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK---ELKR-YGVGGVPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh---HHHh-CCCccccEEEEEe
Confidence 47899999999999999999 4456677777766554322 1222 3448899998765
No 95
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.29 E-value=3.1e-06 Score=50.89 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR 73 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~ 73 (106)
.++++++...++.|+.+|||+|.+....+++.. +.+-.+|.+..+. ...+++ ..++|++++ +|+
T Consensus 10 ~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~------~~~~~~-i~~~Pt~~~~~~g~ 82 (101)
T cd02994 10 NWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG------LSGRFF-VTALPTIYHAKDGV 82 (101)
T ss_pred hHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh------HHHHcC-CcccCEEEEeCCCC
Confidence 345666666788899999999999988886542 3334455544322 223334 488898754 554
No 96
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-06 Score=56.46 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=42.1
Q ss_pred CCCE-EEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938 10 EKPV-VIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV 75 (106)
Q Consensus 10 ~~~v-~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i 75 (106)
..|| +-|+.+||..|+.+...|+++- +.+-.+|+|.+.+.+. . .+...+|++ |.||+.+
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~------~-Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE------D-YEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh------h-cceeeeeEEEEEECCEEe
Confidence 4454 6699999999999999998764 3445677777765443 2 334788886 7799654
No 97
>PTZ00051 thioredoxin; Provisional
Probab=98.28 E-value=5.2e-06 Score=49.52 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=42.9
Q ss_pred HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938 3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR 73 (106)
Q Consensus 3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~ 73 (106)
.+.++++.++ ++.|+.+||++|+.+...|.+. ++.+-.+|++... ....+++. .++|++ +-+|+
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~------~~~~~~~v-~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS------EVAEKENI-TSMPTFKVFKNGS 82 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH------HHHHHCCC-ceeeEEEEEeCCe
Confidence 4566666655 4569999999999998888664 3444444544321 23444444 788876 45776
Q ss_pred Eeec
Q 042938 74 LVGG 77 (106)
Q Consensus 74 ~iGg 77 (106)
.++.
T Consensus 83 ~~~~ 86 (98)
T PTZ00051 83 VVDT 86 (98)
T ss_pred EEEE
Confidence 5543
No 98
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.27 E-value=3.7e-06 Score=52.81 Aligned_cols=49 Identities=18% Similarity=0.437 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
.|++|+.|.|.-|++++.+|++.|++|+.+|+... ++.+++.+.++..+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999998765 55556777666554
No 99
>PRK10026 arsenate reductase; Provisional
Probab=98.27 E-value=3.4e-06 Score=54.59 Aligned_cols=50 Identities=16% Similarity=0.404 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
..|+||+.+.|.-|++++.+|++.|++|+++|+-.+ +..++++..++..+
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMG 52 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence 468999999999999999999999999999998654 56666777776544
No 100
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.27 E-value=3.4e-06 Score=50.33 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=42.1
Q ss_pred HHhhhhC-C-C-EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeE
Q 042938 4 VTRMVNE-K-P-VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRL 74 (106)
Q Consensus 4 ~~~~~~~-~-~-v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~ 74 (106)
+++.+.. . + ++.|+++||++|..++..|.+. +-.+....||.+.. . +...+++ ...+|++ |-+|+.
T Consensus 9 f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~---~l~~~~~-v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 9 FEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-K---ELCKKYG-VKSVPTIIFFKNGKE 83 (103)
T ss_dssp HHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-H---HHHHHTT-CSSSSEEEEEETTEE
T ss_pred HHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-c---hhhhccC-CCCCCEEEEEECCcE
Confidence 4454544 3 3 5678999999999999888554 32444555554433 2 2334445 4889987 567765
Q ss_pred ee
Q 042938 75 VG 76 (106)
Q Consensus 75 iG 76 (106)
+.
T Consensus 84 ~~ 85 (103)
T PF00085_consen 84 VK 85 (103)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 101
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.25 E-value=3.7e-06 Score=50.45 Aligned_cols=57 Identities=18% Similarity=0.393 Sum_probs=36.8
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG 76 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG 76 (106)
+++|+.+||+.|..+.+.+++. + +.+..+|++..++ ...+++ ..++|.+ |-+|+.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~------l~~~~~-v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE------IAEAAG-IMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH------HHHHCC-CeeccEEEEEECCeEEE
Confidence 5678999999999999888662 2 4445555554332 223334 4788886 45776654
No 102
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.5e-06 Score=48.20 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=46.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH-----------hCCCCCccEEEECC-eEeecchH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ-----------LGCQPTVPAVFIGQ-RLVGGPNQ 80 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~-----------~~~~~tvP~ifv~g-~~iGg~~~ 80 (106)
-++|++..||.|..+...|+++++.|++++|..+- +.+.++|.- ..+...+|.+..++ +.|=| +|
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm--~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~D 80 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESM--ANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DD 80 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhh--hhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-ch
Confidence 38999999999999999999999999999987531 112222221 14457899998764 54444 44
Q ss_pred H
Q 042938 81 V 81 (106)
Q Consensus 81 ~ 81 (106)
+
T Consensus 81 l 81 (85)
T COG4545 81 L 81 (85)
T ss_pred h
Confidence 4
No 103
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.24 E-value=3.7e-06 Score=52.42 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=39.8
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
|++|+.++|+-|++++.+|++.|++|+.+|+-.. +...++.+.++..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 5799999999999999999999999999998654 55556776666543
No 104
>PRK10853 putative reductase; Provisional
Probab=98.23 E-value=3.9e-06 Score=52.72 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=40.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
+++|+.++|.-|++++++|++.|++|+.+|+-.. ++.+++.+.+...|
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELG 50 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcC
Confidence 7899999999999999999999999999998654 56666777776544
No 105
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.23 E-value=1.9e-05 Score=45.16 Aligned_cols=71 Identities=7% Similarity=0.037 Sum_probs=52.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+++|+.+.+|+|.+++-+|...|++|+.+.++...... ..+.+...+...++|.+..+|..+.....+...
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQ-LTPEFKKINPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 36899999999999999999999999998887543211 112334456678999999888777666555443
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.23 E-value=4.9e-06 Score=52.85 Aligned_cols=47 Identities=9% Similarity=0.165 Sum_probs=38.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEccc-CCCchHHHHHHHH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQ-IPNGPQIERALQQ 58 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~-~~~~~~~~~~l~~ 58 (106)
.+++|+.++|.-|++++.+|++.|++|+.+|+-. .++.+++...++.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 4789999999999999999999999999999855 4555556666554
No 107
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.9e-06 Score=50.69 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=40.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCc-----eEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe----Eeecch
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANP-----TVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR----LVGGPN 79 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~-----~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~----~iGg~~ 79 (106)
|+-|+.+||+.|+.+...+.++..+| -.+|+|. +++.....+. .++|++ +.+|+ .+|...
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde------~~~~~~~~~V-~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE------LEEVAKEFNV-KAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc------CHhHHHhcCc-eEeeEEEEEECCEEEEEEecCCH
Confidence 34489999999999999998875554 4567776 2234444454 788886 56774 445543
No 108
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.19 E-value=5.4e-06 Score=51.51 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=39.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
|++|+.+.|+-|++++.+|++.+++|+.+|+-.. ++..++.+.++..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 5799999999999999999999999999998654 45556666665544
No 109
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.18 E-value=1e-05 Score=55.35 Aligned_cols=65 Identities=17% Similarity=0.335 Sum_probs=41.5
Q ss_pred hhhhCCCEEEEEc---CCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938 6 RMVNEKPVVIFSK---SECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV 75 (106)
Q Consensus 6 ~~~~~~~v~vf~~---~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i 75 (106)
.+-....+++|+. +|||+|+.+..++++.. +++..+++|.+... + ...+ .+..++|++.+ ||+.+
T Consensus 16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-~---l~~~-~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-E---EAEK-YGVERVPTTIILEEGKDG 90 (215)
T ss_pred hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-H---HHHH-cCCCccCEEEEEeCCeee
Confidence 3333445788988 99999999999997763 33446677654432 1 2223 33588998754 65444
No 110
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.16 E-value=1.5e-05 Score=48.31 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=38.8
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C---CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
+.++++..+ ++.|+.+|||+|+.....|.+. + +.+..+|+| . .+ ...+++ ..++|++ |-+|
T Consensus 10 ~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~---~~~~~~-v~~~Pt~~~~~~g 81 (102)
T cd02948 10 WEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---ID---TLKRYR-GKCEPTFLFYKNG 81 (102)
T ss_pred HHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HH---HHHHcC-CCcCcEEEEEECC
Confidence 445555444 4669999999999988887553 2 223445555 1 12 233334 4788865 5678
Q ss_pred eEe
Q 042938 73 RLV 75 (106)
Q Consensus 73 ~~i 75 (106)
+.+
T Consensus 82 ~~~ 84 (102)
T cd02948 82 ELV 84 (102)
T ss_pred EEE
Confidence 643
No 111
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.16 E-value=1.5e-05 Score=49.87 Aligned_cols=69 Identities=10% Similarity=0.237 Sum_probs=41.0
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE-EE--CC
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-FI--GQ 72 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-fv--~g 72 (106)
++.+...++ ++.|+.+||++|+.....+.+. +..|..++++.+++... +.+.. .+ ..+|++ |+ +|
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~--~~~~~-~g-~~vPt~~f~~~~G 87 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD--EEFSP-DG-GYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh--hhccc-CC-CccceEEEECCCC
Confidence 344444444 4558999999999998877663 34577788887543221 22211 11 248886 44 56
Q ss_pred eEee
Q 042938 73 RLVG 76 (106)
Q Consensus 73 ~~iG 76 (106)
+.++
T Consensus 88 k~~~ 91 (117)
T cd02959 88 DVHP 91 (117)
T ss_pred CCch
Confidence 5544
No 112
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.16 E-value=9.9e-06 Score=48.02 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=36.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG 76 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG 76 (106)
++.|+.+||++|..+...|.+. + +.+-.+|.+..+. ...+++. .++|++++ +|+.+.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~------~~~~~~v-~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD------IAAKYGI-RSIPTLLLFKNGKEVD 82 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH------HHHHcCC-CcCCEEEEEeCCcEee
Confidence 5668999999999988777553 3 3444455544321 3334454 88998755 776543
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.16 E-value=1.2e-05 Score=50.24 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=42.0
Q ss_pred HHHhhhh---CCCE-EEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccE--EEE
Q 042938 3 MVTRMVN---EKPV-VIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPA--VFI 70 (106)
Q Consensus 3 ~~~~~~~---~~~v-~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv 70 (106)
.+.+.+. ...| +-|+.+|||.|..+-++|.++. +.+-.+|+|+.++..+ .++. ...|+ +|-
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~------~y~I-~amPtfvffk 76 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQ------YFDI-SYIPSTIFFF 76 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHH------hcCc-eeCcEEEEEE
Confidence 3445444 2333 3399999999999999997764 3455677776654332 2232 44555 578
Q ss_pred CCeEe
Q 042938 71 GQRLV 75 (106)
Q Consensus 71 ~g~~i 75 (106)
+|+++
T Consensus 77 ngkh~ 81 (114)
T cd02986 77 NGQHM 81 (114)
T ss_pred CCcEE
Confidence 89876
No 114
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.13 E-value=9.3e-06 Score=50.07 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=36.1
Q ss_pred EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938 13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG 76 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG 76 (106)
++.|+.+|||.|+.....+.+. ++.+-.+|++..+. ...+++ ..++|++ |.+|+.++
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~------l~~~~~-V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR------LARKLG-AHSVPAIVGIINGQVTF 93 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH------HHHHcC-CccCCEEEEEECCEEEE
Confidence 5669999999999887776443 34445555554322 223334 4889986 47887553
No 115
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.12 E-value=3.9e-05 Score=43.60 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=51.4
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.+|+.+..|+|.+++-+|...|++|+.++++...... ..+.+.+.+...++|.+..+|..+.....+..
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~-~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGL-DTPEFLAMNPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccc-cCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence 6899999999999999999999999998887532211 11233345667899999999887776655543
No 116
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.8e-05 Score=54.03 Aligned_cols=71 Identities=10% Similarity=-0.010 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
..|.+|+.-.|||..|++-.|+.+|++|+++++|-..-.+. +++....+..||++..||+.|+-.-.+.+.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~---ll~~np~hkKVPvL~Hn~k~i~ESliiveY 78 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEW---LLEKNPVHKKVPVLEHNGKPICESLIIVEY 78 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHH---HHHhccccccCCEEEECCceehhhHHHHHH
Confidence 56999999999999999999999999999999887653333 343333678999999999998766555444
No 117
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.12 E-value=1.6e-05 Score=52.00 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=37.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCC-----CCCccEE--EECCeEee
Q 042938 13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGC-----QPTVPAV--FIGQRLVG 76 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~-----~~tvP~i--fv~g~~iG 76 (106)
++.|+.+|||.|+.....+.+. ++.+-.+|+|..++. .++++. ..++|++ |.+|+.++
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~l------a~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNV------AEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHH------HHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 6779999999999998877554 244455666665432 222232 1237875 78897664
No 118
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.11 E-value=1.1e-05 Score=49.17 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC------------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE-
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG------------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV- 68 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i- 68 (106)
+++.++.++ ++.|+.+||++|.+....+++.. +.+-.+|.|..+ +...+++ ..++|++
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------~l~~~~~-v~~~Ptl~ 83 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------DIADRYR-INKYPTLK 83 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------HHHHhCC-CCcCCEEE
Confidence 445565555 46799999999999988885431 333445555432 2333444 4889987
Q ss_pred -EECCe
Q 042938 69 -FIGQR 73 (106)
Q Consensus 69 -fv~g~ 73 (106)
|-+|+
T Consensus 84 ~~~~g~ 89 (108)
T cd02996 84 LFRNGM 89 (108)
T ss_pred EEeCCc
Confidence 55665
No 119
>PRK10996 thioredoxin 2; Provisional
Probab=98.10 E-value=1.7e-05 Score=50.91 Aligned_cols=68 Identities=10% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV 75 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i 75 (106)
++++++..+ ++.|+.+||++|......|.+. +-.+..+.+|.+... +...+++ ..++|++ |-+|+.+
T Consensus 45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~----~l~~~~~-V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 45 LDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER----ELSARFR-IRSIPTIMIFKNGQVV 119 (139)
T ss_pred HHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH----HHHHhcC-CCccCEEEEEECCEEE
Confidence 455555444 5679999999999988777553 323444444443321 2333444 4788886 4588755
Q ss_pred e
Q 042938 76 G 76 (106)
Q Consensus 76 G 76 (106)
.
T Consensus 120 ~ 120 (139)
T PRK10996 120 D 120 (139)
T ss_pred E
Confidence 3
No 120
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.10 E-value=1.4e-05 Score=48.12 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR 73 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~ 73 (106)
+++.+...+ ++.|+.+||++|+.....+.+.. +.+-.+|++..+. ...+++ ..++|++ |-+|+
T Consensus 11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~------~~~~~~-v~~~Pt~~~~~~g~ 83 (101)
T cd03003 11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM------LCRSQG-VNSYPSLYVFPSGM 83 (101)
T ss_pred HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH------HHHHcC-CCccCEEEEEcCCC
Confidence 445554444 56699999999999988886542 2334556654332 223334 3788987 55675
Q ss_pred E
Q 042938 74 L 74 (106)
Q Consensus 74 ~ 74 (106)
.
T Consensus 84 ~ 84 (101)
T cd03003 84 N 84 (101)
T ss_pred C
Confidence 3
No 121
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.08 E-value=2.6e-05 Score=48.74 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHhhhhCC-C--EEEEEcCCCchHHHHHHHH
Q 042938 3 MVTRMVNEK-P--VVIFSKSECCICFSIQTLI 31 (106)
Q Consensus 3 ~~~~~~~~~-~--v~vf~~~~Cp~C~~~~~~L 31 (106)
.+.++.+++ + ++.|+.+|||+|++....+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 456667766 3 5668999999999987655
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.07 E-value=1.6e-05 Score=53.11 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee---cchHHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG---GPNQVM 82 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG---g~~~~~ 82 (106)
|+-|+.+|||.|+.+...|.++. +.|-.+|++.. . ....++ ..++|++ |.+|+.++ |+++..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~----~---l~~~f~-v~~vPTlllyk~G~~v~~~vG~~~~~ 158 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT----G---ASDEFD-TDALPALLVYKGGELIGNFVRVTEDL 158 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch----h---hHHhCC-CCCCCEEEEEECCEEEEEEechHHhc
Confidence 44589999999998888776653 33444555532 2 222334 4788975 67998764 444322
Q ss_pred -hHHHhCCchHHHHhcC
Q 042938 83 -SLHVQNELGPLLVRAG 98 (106)
Q Consensus 83 -~~~~~g~L~~~L~~~g 98 (106)
.-.....|+..|.+.|
T Consensus 159 g~~f~~~~le~~L~~~g 175 (175)
T cd02987 159 GEDFDAEDLESFLVEYG 175 (175)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 1223345666665544
No 123
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.05 E-value=6.6e-05 Score=52.39 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~ 86 (106)
..||+|.+++-.|..+|++|+.+.+|.....+ .+.+.+...++|++..+|..+.....+.+...
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 55999999999999999999999998764333 33345666899999999998888887766544
No 124
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.04 E-value=5.9e-05 Score=43.19 Aligned_cols=69 Identities=9% Similarity=0.197 Sum_probs=49.0
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSL 84 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~ 84 (106)
.+|+.+.|+ |.+++-+|...|++|+.++++...... ..+.+.+.+...++|.+..+ |..+.....+...
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTKTQ-KGADYLAINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccCcc-CCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 578888764 889999999999999998887643210 11233455777899999887 7777666655554
No 125
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.02 E-value=3.9e-05 Score=45.53 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHhhhhCC--C--EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 3 MVTRMVNEK--P--VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 3 ~~~~~~~~~--~--v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
.+++++... + ++.|+.+||+.|+++...|.+.. ..+..+.+|.+... +...+++. .++|++ |.+|
T Consensus 4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~i-~~~Pt~~~~~~g 78 (97)
T cd02984 4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFEI-TAVPTFVFFRNG 78 (97)
T ss_pred HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcCC-ccccEEEEEECC
Confidence 344555444 3 46699999999999988886532 23444455543321 23334453 778875 5677
Q ss_pred eEe
Q 042938 73 RLV 75 (106)
Q Consensus 73 ~~i 75 (106)
+.+
T Consensus 79 ~~~ 81 (97)
T cd02984 79 TIV 81 (97)
T ss_pred EEE
Confidence 654
No 126
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.02 E-value=2.4e-05 Score=48.73 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=39.9
Q ss_pred CEEEEEcCC--CchHHHHHHHHhhcCCC------ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938 12 PVVIFSKSE--CCICFSIQTLICGFGAN------PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP 78 (106)
Q Consensus 12 ~v~vf~~~~--Cp~C~~~~~~L~~~~v~------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~ 78 (106)
.|+.|+.+| ||.|..+..+|.+..-+ +-.+|+|..+ + ...+++ ..++|++ |-+|+.++..
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~---la~~f~-V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---A---LAARFG-VLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---H---HHHHcC-CCcCCEEEEEECCEEEEEE
Confidence 367788886 99999999999775333 3345555543 2 222334 4888886 6799877654
No 127
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.98 E-value=0.00011 Score=42.01 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=48.3
Q ss_pred cCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 18 KSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 18 ~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
...||+|.+++-+|...|++|+.+.++...... .+.+.+.+....+|.+..+|..+.....+..
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~--~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDT--RARILEFSPTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccc--cHHHHhhCCCCcCCEEEECCEEEEcHHHHHH
Confidence 357999999999999999999998887643211 1234455767899999999988777766554
No 128
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.97 E-value=1.5e-05 Score=51.67 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=39.5
Q ss_pred HHHhhhh--CCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938 3 MVTRMVN--EKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI 70 (106)
Q Consensus 3 ~~~~~~~--~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv 70 (106)
.+.+.+. ..+ |+-|+.+||+.|..+..+|.+.. +.+-.+|||..++..+ .++.....|.+ |-
T Consensus 13 e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~------~y~I~~~~t~~~ffk 86 (142)
T PLN00410 13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNT------MYELYDPCTVMFFFR 86 (142)
T ss_pred HHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHH------HcCccCCCcEEEEEE
Confidence 4555553 233 34499999999999999987764 2335677776654322 23432244555 44
Q ss_pred CCe
Q 042938 71 GQR 73 (106)
Q Consensus 71 ~g~ 73 (106)
+|+
T Consensus 87 ~g~ 89 (142)
T PLN00410 87 NKH 89 (142)
T ss_pred CCe
Confidence 665
No 129
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.97 E-value=4e-05 Score=46.48 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=32.1
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+||++|++....|++..-. ...+.||.+..... ...+++ ..++|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~---l~~~~~-V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS---LLSRYG-VVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH---HHHhcC-CeecCEEE
Confidence 5669999999999999888665322 23334444312222 223334 47889764
No 130
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.95 E-value=0.00018 Score=40.78 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=50.7
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
.+|+.+. +.|.+++-+|...|++|+.+.++.......- +.+.+.+...++|.+..+|..+.....+....
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAP-PEYLAINPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCC-HHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5777775 7799999999999999999888753211111 13334566689999999998888877766643
No 131
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.95 E-value=3.8e-05 Score=46.34 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=33.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 13 VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
++.|+.+||+.|+++...+.+.. +.+-.+|.+..+ +...+++ ..++|++ |.+|
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~------~~~~~~~-i~~~Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE------SLCQQAN-IRAYPTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH------HHHHHcC-CCcccEEEEEcCC
Confidence 56699999999999888775542 334445555432 2223334 4788886 4565
No 132
>PRK15113 glutathione S-transferase; Provisional
Probab=97.94 E-value=0.00014 Score=49.37 Aligned_cols=72 Identities=10% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCEEEEEcC--CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 11 KPVVIFSKS--ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 11 ~~v~vf~~~--~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
..+++|+.+ .||+|.+++-+|.+.|++|+.+.++..... .-.+.+.+.+....||++..||..+-...-+..
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCCCCEEEECCEEEecHHHHHH
Confidence 457899975 699999999999999999999888764221 011233455667899999999877665555444
No 133
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.93 E-value=3.7e-05 Score=45.91 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHhhhhCCC-EEEEEcCCCchHHHHHHHHhhc----CC---CceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938 4 VTRMVNEKP-VVIFSKSECCICFSIQTLICGF----GA---NPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR 73 (106)
Q Consensus 4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~----~v---~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~ 73 (106)
+.+.+..++ ++.|+.+||++|+.....+.+. .- .+....+|.+... . ..+.++ ..++|++ |-+|+
T Consensus 10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~---~~~~~~-v~~~Pt~~~~~~g~ 84 (102)
T cd03005 10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-E---LCSEFQ-VRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-h---hHhhcC-CCcCCEEEEEeCCC
Confidence 444554445 4668999999999888777443 11 2334444433322 1 223334 4789985 45665
Q ss_pred Ee
Q 042938 74 LV 75 (106)
Q Consensus 74 ~i 75 (106)
.+
T Consensus 85 ~~ 86 (102)
T cd03005 85 KV 86 (102)
T ss_pred ee
Confidence 43
No 134
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.92 E-value=8.3e-05 Score=45.00 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=32.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+||++|++....+.+. + +.+-.+|++.++. . +...+++ ..++|+++
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~---~~~~~~~-i~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-K---PLCGKYG-VQGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-H---HHHHHcC-CCcCCEEE
Confidence 6779999999999988777554 2 2333445554322 1 2333444 47899874
No 135
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.92 E-value=0.00011 Score=43.59 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=36.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCeEe
Q 042938 13 VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~~i 75 (106)
++.|+.+||+.|.+....+.+.. -.+....||.+... + ...+++ ..++|+++ -+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~---l~~~~~-i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-Q---IAQQFG-VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-H---HHHHcC-CCCCCEEEEEeCCEEe
Confidence 56689999999999988886542 22334444443331 1 223334 47899874 677654
No 136
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.90 E-value=5.1e-05 Score=46.22 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=15.8
Q ss_pred CEEEEEcCCCchHHHHHHHHh
Q 042938 12 PVVIFSKSECCICFSIQTLIC 32 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~ 32 (106)
.+++|+.++||+|+++.+.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 478899999999999876665
No 137
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.89 E-value=4.4e-05 Score=48.07 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=32.6
Q ss_pred EEEEEc-------CCCchHHHHHHHHhh----cC--CCceEEEcccCCCchH-HHHHHHHhCCCC-CccEEE
Q 042938 13 VVIFSK-------SECCICFSIQTLICG----FG--ANPTVYELDQIPNGPQ-IERALQQLGCQP-TVPAVF 69 (106)
Q Consensus 13 v~vf~~-------~~Cp~C~~~~~~L~~----~~--v~~~~v~vd~~~~~~~-~~~~l~~~~~~~-tvP~if 69 (106)
++.|+. +|||.|+.+...|++ .. +.+-.+|++..+.-.. ..+....+.. . ++|++.
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~ 95 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLL 95 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEE
Confidence 556888 899999988776644 33 4556667766431000 0122223333 5 889874
No 138
>PLN02473 glutathione S-transferase
Probab=97.89 E-value=0.00014 Score=49.20 Aligned_cols=69 Identities=13% Similarity=0.026 Sum_probs=53.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+.+|+.+.+|+|.+++-+|.++|++|+.+.++... .... +++. .+...++|++..||..|....-+...
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~--~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKP--EHLL-RQPFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCH--HHHh-hCCCCCCCeEEECCEEEEehHHHHHH
Confidence 57899999999999999999999999988776542 2222 3443 46668999999999888777766553
No 139
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.87 E-value=8.1e-05 Score=45.58 Aligned_cols=52 Identities=10% Similarity=0.221 Sum_probs=31.9
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+|||+|++....+.+.. +.+-.+|+|. +... ...+..+...+|+++
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~--~~~~---~~~~~~~v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG--EQRE---FAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc--cchh---hHHhhcCCCcCCEEE
Confidence 57799999999999988886542 3333444444 2122 222223457899873
No 140
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.86 E-value=8.1e-05 Score=50.43 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=45.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee---cchHHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG---GPNQVM 82 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG---g~~~~~ 82 (106)
|+-|+.+||+.|..+...|.++. +.|-.++++.. ...++ ..++|++ |.||+.++ |+.++-
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---------~~~~~-i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---------IPNYP-DKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---------HhhCC-CCCCCEEEEEECCEEEEEEeCchhhC
Confidence 34499999999999988887653 33444555421 12233 4788886 67887553 343331
Q ss_pred h-HHHhCCchHHHHhcC
Q 042938 83 S-LHVQNELGPLLVRAG 98 (106)
Q Consensus 83 ~-~~~~g~L~~~L~~~g 98 (106)
. -.....|+..|.+.|
T Consensus 176 g~~~~~~~lE~~L~~~g 192 (192)
T cd02988 176 GMNTTMEDLEWLLVQVG 192 (192)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 1 112345666666554
No 141
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.86 E-value=4.3e-05 Score=46.29 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHhhhhCCC-EEEEEcCCCchHHHHHHHHhh
Q 042938 4 VTRMVNEKP-VVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
+.+..+... ++.|+.+|||+|++....|++
T Consensus 9 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~ 39 (104)
T cd03000 9 FKDVRKEDIWLVDFYAPWCGHCKKLEPVWNE 39 (104)
T ss_pred hhhhccCCeEEEEEECCCCHHHHhhChHHHH
Confidence 334444334 456899999999988877754
No 142
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.83 E-value=0.00016 Score=46.55 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-E--CC
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-I--GQ 72 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v--~g 72 (106)
+++.+...+ ++.|+.+||++|......|.++ + +.+..+++|.... .+.+.+++ ...+|+++ + +|
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~----~~~~~~~~-V~~iPt~v~~~~~G 87 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW----LPEIDRYR-VDGIPHFVFLDREG 87 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc----HHHHHHcC-CCCCCEEEEECCCC
Confidence 344555544 4569999999999998887654 2 3455566664321 12334445 47899864 4 46
Q ss_pred eEe
Q 042938 73 RLV 75 (106)
Q Consensus 73 ~~i 75 (106)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 544
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.82 E-value=9.2e-05 Score=50.98 Aligned_cols=67 Identities=21% Similarity=0.412 Sum_probs=45.8
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCC-----CchHHHHHHHHhCCCCCccEEEE
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIP-----NGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~-----~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.++++.....+++|+++.||+|+....+| +++|++...+++|... +...-....+.++. .++|.+|+
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal~L 189 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPALFL 189 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEEEE
Confidence 45666677789999999999999887777 5568888888888531 11000122333454 79999975
No 144
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.80 E-value=0.00011 Score=46.23 Aligned_cols=66 Identities=8% Similarity=0.124 Sum_probs=38.8
Q ss_pred HHhhhhCC--CEEE-EEcCCCch--HH--HHH--------HHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938 4 VTRMVNEK--PVVI-FSKSECCI--CF--SIQ--------TLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV 68 (106)
Q Consensus 4 ~~~~~~~~--~v~v-f~~~~Cp~--C~--~~~--------~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i 68 (106)
+.+.+..+ .+++ |+.+||+. |+ ... +.|...++.+-.+|+|.+++ ..++++ ..++|++
T Consensus 19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~------La~~~~-I~~iPTl 91 (120)
T cd03065 19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK------VAKKLG-LDEEDSI 91 (120)
T ss_pred HHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH------HHHHcC-CccccEE
Confidence 34445444 3444 56666755 98 333 33344567777788887643 222334 4888886
Q ss_pred --EECCeEee
Q 042938 69 --FIGQRLVG 76 (106)
Q Consensus 69 --fv~g~~iG 76 (106)
|.||+.+.
T Consensus 92 ~lfk~G~~v~ 101 (120)
T cd03065 92 YVFKDDEVIE 101 (120)
T ss_pred EEEECCEEEE
Confidence 78998664
No 145
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.77 E-value=0.0001 Score=44.01 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=33.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
++.|+.+|||+|.+..+.+.+. . -.+....+|.+..... ...+++. .++|.+++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~i-~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD---LAKKYGV-SGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh---hHHhCCC-CCcCEEEE
Confidence 6779999999999888777543 2 2344555554441122 3333444 88998753
No 146
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.76 E-value=6.8e-05 Score=46.69 Aligned_cols=60 Identities=5% Similarity=-0.074 Sum_probs=36.9
Q ss_pred hhCCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938 8 VNEKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR 73 (106)
Q Consensus 8 ~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~ 73 (106)
++.++ ++.|+.+||++|+.+...+++.. +.+-.+|+|.+++ ......+..++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~------l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG------KCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH------HHHHhcCCcccCEEEEEECCc
Confidence 34444 56699999999999998887653 2334455554432 22111233677875 67775
No 147
>PLN02378 glutathione S-transferase DHAR1
Probab=97.76 E-value=0.00025 Score=48.29 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
..||+|.+++-+|.++|++|+.+.||...... ++ .+.+...+||++..||..+....-+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~---~~-l~inP~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ---WF-LDISPQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH---HH-HHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence 45999999999999999999998887653322 23 3456668999999999877766655553
No 148
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.76 E-value=8.4e-05 Score=44.42 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=31.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+||++|++....+.+.. +.+-.+|.+..+ +..++++. .++|+++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~i-~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ------SLAQQYGV-RGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH------HHHHHCCC-CccCEEE
Confidence 66789999999999988775532 233344444322 23334444 7899873
No 149
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.76 E-value=8e-05 Score=44.54 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=37.6
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCC-chHHHHHHHHhCCCCCccEE--EECC
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPN-GPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
+.++++..+ ++.|+.+|||+|++....+.+. . -.+....+|.+.+ ... ...+++ ..++|++ |-+|
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~-i~~~Pt~~~~~~g 85 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA---LKEEYN-VKGFPTFKYFENG 85 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH---HHHhCC-CccccEEEEEeCC
Confidence 344444443 5779999999999887666443 2 2233333343332 122 333334 4788886 4566
Q ss_pred eEe
Q 042938 73 RLV 75 (106)
Q Consensus 73 ~~i 75 (106)
+.+
T Consensus 86 ~~~ 88 (104)
T cd02997 86 KFV 88 (104)
T ss_pred Cee
Confidence 543
No 150
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.76 E-value=7.6e-05 Score=43.75 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=36.9
Q ss_pred HHhhhhCC--CEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 4 VTRMVNEK--PVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 4 ~~~~~~~~--~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
+.+++... -+++|++++|++|..+...+.+. +-.+....++.+.. . ....+++ .+.+|+++
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~---~~~~~~~-i~~~Pt~~ 76 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-N---DLCSEYG-VRGYPTIK 76 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-H---HHHHhCC-CCCCCEEE
Confidence 44555555 36779999999999988877553 22344444443331 1 2333334 48899874
No 151
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.75 E-value=0.00013 Score=49.12 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred EEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 15 IFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+|+.+.||+|.+++-+|..+|++|+.+.++.........+.+...+...++|++..||..+.....+....
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHH
Confidence 68888999999999999999999999888742210111123445566789999999998887777665533
No 152
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.74 E-value=6e-05 Score=44.79 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC--------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG--------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~--------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
+++.+...+ ++.|+.+||+.|++....+.+.. +.+..+|.+..+ +...+++ ...+|.++
T Consensus 6 ~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~-i~~~P~~~ 74 (102)
T TIGR01126 6 FDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK------DLASRFG-VSGFPTIK 74 (102)
T ss_pred HHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH------HHHHhCC-CCcCCEEE
Confidence 344444443 67799999999998877775532 223333443321 2333334 48899873
No 153
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.73 E-value=0.00021 Score=49.66 Aligned_cols=23 Identities=13% Similarity=0.566 Sum_probs=20.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhhc
Q 042938 12 PVVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
.|++|+-+.||||+++...+.++
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHH
Confidence 48899999999999998888775
No 154
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.72 E-value=0.00018 Score=51.19 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=40.1
Q ss_pred HHhhhhCCCEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCc-----hHHHHHHHHhCCCCCccEEEE
Q 042938 4 VTRMVNEKPVVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNG-----PQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~-----~~~~~~l~~~~~~~tvP~ifv 70 (106)
++++....-++.|+.+|||+|+.....|.+ +++.+..+++|..+.. ..-......++ ..++|++|+
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g-V~~vPtl~L 235 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK-IRTVPAVFL 235 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC-CCcCCeEEE
Confidence 334444445777999999999988877754 4666666777764311 00011223334 488999853
No 155
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.72 E-value=0.00021 Score=48.09 Aligned_cols=35 Identities=26% Similarity=0.547 Sum_probs=26.3
Q ss_pred CEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccC
Q 042938 12 PVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQI 46 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~ 46 (106)
++++|+.+|||+|++....| +++++.+.-+.+|..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 48999999999999875444 556776666777654
No 156
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.70 E-value=0.00048 Score=43.59 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHhhhhCCC-E-EEEEcCCCchHHHHHH-HHhh------cCCCceEEEcccC--CCchH-HHHHHHHhCCCCCccEEE-
Q 042938 3 MVTRMVNEKP-V-VIFSKSECCICFSIQT-LICG------FGANPTVYELDQI--PNGPQ-IERALQQLGCQPTVPAVF- 69 (106)
Q Consensus 3 ~~~~~~~~~~-v-~vf~~~~Cp~C~~~~~-~L~~------~~v~~~~v~vd~~--~~~~~-~~~~l~~~~~~~tvP~if- 69 (106)
.++++.++++ | +.|+.+||++|++..+ .+.. ++-.|..+.+|.+ ++... ..+.+....+...+|+++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 3455666555 4 4488999999998854 3332 3445665555543 33222 222222233457788864
Q ss_pred E--CCeEeecc
Q 042938 70 I--GQRLVGGP 78 (106)
Q Consensus 70 v--~g~~iGg~ 78 (106)
+ +|+.+-++
T Consensus 87 l~~~G~~~~~~ 97 (124)
T cd02955 87 LTPDLKPFFGG 97 (124)
T ss_pred ECCCCCEEeee
Confidence 4 57777433
No 157
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.66 E-value=0.00013 Score=44.97 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=33.2
Q ss_pred EEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938 16 FSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~ 60 (106)
|+.+.|.-|++++++|++.|++|+.+|+... .+..++.+.+...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7899999999999999999999999998775 44455777776665
No 158
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.65 E-value=0.00046 Score=48.90 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=47.7
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
-.||+|.+++-+|.++|++|+.+.|+......+ + ...+...++|++..+|..+.....+...
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~---f-l~iNP~GkVPvL~~d~~~L~ES~aI~~Y 132 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEW---F-LKISPEGKVPVVKLDEKWVADSDVITQA 132 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHH---H-HhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence 459999999999999999999988876543222 3 3456668999999999877766665553
No 159
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.61 E-value=1e-05 Score=51.60 Aligned_cols=63 Identities=8% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHhhhhCCCEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 4 VTRMVNEKPVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
++.+.+.-.+++++.+|||.|.+....|.+. ++++.++..|.+++. +..++. ++.+++|++++
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el--~~~~lt--~g~~~IP~~I~ 103 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKEL--MDQYLT--NGGRSIPTFIF 103 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHH--TTTTTT---SS--SSEEEE
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhH--HHHHHh--CCCeecCEEEE
Confidence 3444445579999999999999887777543 566666665554321 112332 45589999754
No 160
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.57 E-value=0.00039 Score=43.07 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHhhhhCC--C-EEEEEcCCCchHHHHHHHHhhcCCC-------ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 4 VTRMVNEK--P-VVIFSKSECCICFSIQTLICGFGAN-------PTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 4 ~~~~~~~~--~-v~vf~~~~Cp~C~~~~~~L~~~~v~-------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
+++.+..+ + ++.|+.+|||.|......+.+..-. +....+|-..+. ..+..++++. ..+|+++
T Consensus 11 f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i-~~~Pt~~ 83 (114)
T cd02992 11 FNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGV-TGYPTLR 83 (114)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCC-CCCCEEE
Confidence 44555443 2 5668999999999988887654321 222333322111 1123344454 7889874
No 161
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=97.51 E-value=0.0011 Score=39.48 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=40.4
Q ss_pred EEEEcCC-CchHH------HHHHHHhh--------cCCCceEEEcccCCCchHHHHHHHHh-CCCCCccEEEECCeEee-
Q 042938 14 VIFSKSE-CCICF------SIQTLICG--------FGANPTVYELDQIPNGPQIERALQQL-GCQPTVPAVFIGQRLVG- 76 (106)
Q Consensus 14 ~vf~~~~-Cp~C~------~~~~~L~~--------~~v~~~~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv~g~~iG- 76 (106)
+||+..- |+.|. ..-.+|+. ..+.++++||...++...-+++..+. .-..-.|.|.++|+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 4677754 87775 44455533 24567889998877765444555554 33356799999999998
Q ss_pred cchHHHhHH
Q 042938 77 GPNQVMSLH 85 (106)
Q Consensus 77 g~~~~~~~~ 85 (106)
|+-.++..+
T Consensus 81 Gnp~LK~I~ 89 (93)
T PF07315_consen 81 GNPQLKDIY 89 (93)
T ss_dssp SS--HHHHH
T ss_pred CCccHHHHH
Confidence 555555443
No 162
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00025 Score=47.64 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=50.5
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLH 85 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~ 85 (106)
-+|.-+.||||.+++-++--+|++++..-++.+++...++ +-|+..||.+. -+|++++..=|+....
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~r-----miG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIR-----MIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhh-----hhcccccceEEccccccchhhhHHHHHH
Confidence 3688899999999999999999999877666655543322 23458999987 5688888777766644
No 163
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0006 Score=46.07 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=52.5
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHhCCCCCccEEEECCe-EeecchHHHhHH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQLGCQPTVPAVFIGQR-LVGGPNQVMSLH 85 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~~~~~tvP~ifv~g~-~iGg~~~~~~~~ 85 (106)
++|+.+.+|+|.+++-.|.++|++|+.+.|+... ... +.+...+....||++..+|- .+-...-+....
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~---~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL 72 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKP---PDFLALNPLGKVPALVDDDGEVLTESGAILEYL 72 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCC---HHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHH
Confidence 6788888999999999999999999999888875 222 24445576789999998874 566555554443
No 164
>PTZ00062 glutaredoxin; Provisional
Probab=97.49 E-value=0.00053 Score=46.94 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHhhhh--CCC-EEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeE
Q 042938 3 MVTRMVN--EKP-VVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRL 74 (106)
Q Consensus 3 ~~~~~~~--~~~-v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~ 74 (106)
.+.++++ ... |+.|+.+|||.|+.+...|.++--+ +..+.|+.+ ++ ...+|.+ |-||+.
T Consensus 8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~-V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DA-NNEYGVFEFYQNSQL 74 (204)
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cC-cccceEEEEEECCEE
Confidence 4556666 344 5556799999999999998776432 444555543 12 3667764 578877
Q ss_pred eecc
Q 042938 75 VGGP 78 (106)
Q Consensus 75 iGg~ 78 (106)
|+.+
T Consensus 75 i~r~ 78 (204)
T PTZ00062 75 INSL 78 (204)
T ss_pred Eeee
Confidence 7644
No 165
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.47 E-value=0.00034 Score=48.52 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=35.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCC----CceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938 13 VVIFSKSECCICFSIQTLICGFGA----NPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v----~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i 75 (106)
++.|+.+|||+|++....+++..- ......+|.+.. . +...+++ ..++|++ |.+|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~---~l~~~~~-I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-L---NLAKRFA-IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-H---HHHHHcC-CCcCCEEEEEECCEEE
Confidence 677999999999999988866421 222333333322 1 2333334 4788876 5688755
No 166
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.47 E-value=0.00074 Score=44.19 Aligned_cols=38 Identities=24% Similarity=0.509 Sum_probs=28.2
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccC
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICG----FGANPTVYELDQI 46 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~ 46 (106)
....++.|+.+|||+|++....|.+ +++.+..+++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 3446889999999999988877754 4555556677653
No 167
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.46 E-value=0.00065 Score=47.82 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCC--CchH---HHHHHHHhCCCCCccEEEE
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIP--NGPQ---IERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~--~~~~---~~~~l~~~~~~~tvP~ifv 70 (106)
.++++.+...+++|.++.||||++...+| +++|++..-+.+|... .... -.....+.+. ..+|.+|+
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~PAl~L 212 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV-KYFPALML 212 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC-cccceEEE
Confidence 46677788899999999999999887777 5568888778887632 2111 0011123344 78999885
No 168
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.45 E-value=0.00081 Score=47.55 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHHhhhhCCCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCCC--chH---HHHHHHHhCCCCCccEEEE
Q 042938 3 MVTRMVNEKPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIPN--GPQ---IERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~~--~~~---~~~~l~~~~~~~tvP~ifv 70 (106)
.++++.+...+++|.++.||+|++...+| +++|++...+.+|.... ... -....++++ ...+|.+|+
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~Pal~L 219 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLG-VKYFPALYL 219 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcC-CccCceEEE
Confidence 46677778889999999999999887777 56788888888886522 111 001122334 478999875
No 169
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.44 E-value=0.00039 Score=40.45 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
+.++-++++ ++.|+.+||++|+...+.+-+ ..-.|..+.+|.+...... .+.. ..+|.+++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 334444444 466899999999988766622 3445777777765443332 1222 33888864
No 170
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.44 E-value=0.0011 Score=44.54 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHhh
Q 042938 11 KPVVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
..|++|+-+.||||+++.+.+.+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh
Confidence 45889999999999999988874
No 171
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.43 E-value=0.00026 Score=42.16 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++.|+.+||++|+.....+.+.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~ 43 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEEL 43 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHH
Confidence 5669999999999988877554
No 172
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.41 E-value=0.0011 Score=44.44 Aligned_cols=66 Identities=11% Similarity=-0.024 Sum_probs=49.2
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHh
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMS 83 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~ 83 (106)
.+|+.+.||++.+++-+|...|++|+.++++......+ +...+...++|++.. +|..+-....+..
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~----~~~~nP~g~vP~L~~~~g~~l~eS~aI~~ 68 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNG----VAQYNPLGKVPALVTEEGECWFDSPIIAE 68 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchh----hhhcCCccCCCeEEeCCCCeeecHHHHHH
Confidence 68999999999999999999999999988876433222 223466689999984 6666655555443
No 173
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.38 E-value=0.0016 Score=37.68 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=47.6
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.++|+.+..+.|.+++-+|...|++|+.+.++..++..+.... ......++|++.+||..+....-+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~--~~~~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKD--GSLMFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccc--cCCCCCCCCEEEECCEEEeeHHHHHH
Confidence 4688889999999999999999999998888752210110000 01124689999999987776655544
No 174
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.26 E-value=0.00059 Score=46.66 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=34.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCC--c--eEEEcc-----------cCCCchHHHHHHHHh-C-CCCCccEEEECC-eE
Q 042938 13 VVIFSKSECCICFSIQTLICGFGAN--P--TVYELD-----------QIPNGPQIERALQQL-G-CQPTVPAVFIGQ-RL 74 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~--~--~~v~vd-----------~~~~~~~~~~~l~~~-~-~~~tvP~ifv~g-~~ 74 (106)
|.+||+.+|+.|.-+-++|.++.-. . -.+.|| ..+...+=|....+. + .....|+++||| ++
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6799999999999999888775321 1 111222 222222222333333 2 345789999999 46
Q ss_pred eecch
Q 042938 75 VGGPN 79 (106)
Q Consensus 75 iGg~~ 79 (106)
.+|++
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 67776
No 175
>PLN02395 glutathione S-transferase
Probab=97.26 E-value=0.0029 Score=42.71 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=51.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC--chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN--GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~--~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
+++|+.+.| .+.+++-+|.++|++|+.+.++.... ..+ .+.+.+...+||++..+|..+.....+....
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~---~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQP---EYLALQPFGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCH---HHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 688987775 48999999999999999988876422 122 3344576789999999988777777665543
No 176
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.24 E-value=0.0017 Score=37.62 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=24.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccC
Q 042938 13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQI 46 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~ 46 (106)
|.+|+.+.||+|..+.+.+.+. ++.+..+.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence 5789999999999998888764 344555544433
No 177
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.22 E-value=0.0028 Score=37.35 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=32.4
Q ss_pred EEEEEcCCCchHHHHHHHHhh----cC--CCceEEEcccCCCchHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICG----FG--ANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~----~~--v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
++.|+.+|||.|.+..+.|.+ ++ -.++.+-|..+++..+.++.++..
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 567999999999988777744 34 566666666666666677777655
No 178
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.21 E-value=0.0017 Score=43.46 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHhhc---CCCceEEEcc
Q 042938 13 VVIFSKSECCICFSIQTLICGF---GANPTVYELD 44 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd 44 (106)
++.|+.+|||+|++....|.++ ++.+--++++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~ 106 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK 106 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 5669999999999887777554 4444444443
No 179
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0014 Score=39.43 Aligned_cols=76 Identities=13% Similarity=0.248 Sum_probs=49.5
Q ss_pred hCCCEEEEEcCC-CchHH------HHHHHHhhc--------CCCceEEEcccCCCchHHHHHHHHh-CCCCCccEEEECC
Q 042938 9 NEKPVVIFSKSE-CCICF------SIQTLICGF--------GANPTVYELDQIPNGPQIERALQQL-GCQPTVPAVFIGQ 72 (106)
Q Consensus 9 ~~~~v~vf~~~~-Cp~C~------~~~~~L~~~--------~v~~~~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv~g 72 (106)
+..++++|+... |..|. ..-.+|+.. +..|+++||...+.....+++..+. ....-.|.|.++|
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved 82 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence 455788998865 77775 445556432 3456788987666655545555554 3345679999999
Q ss_pred eEee-cchHHHhH
Q 042938 73 RLVG-GPNQVMSL 84 (106)
Q Consensus 73 ~~iG-g~~~~~~~ 84 (106)
+.|+ |.-.++..
T Consensus 83 eiVaeGnprlKdi 95 (106)
T COG4837 83 EIVAEGNPRLKDI 95 (106)
T ss_pred eEeecCCchHHHH
Confidence 9997 55455443
No 180
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0028 Score=43.48 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938 20 ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 20 ~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~ 86 (106)
.||+|+++-..|...+++|....||.....++ +...+....+|.+-.||+.+-..+.+....+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 49999999999999999998877777655554 3344556899999999999999888766543
No 181
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.20 E-value=0.0018 Score=42.12 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=29.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C--------CCceEEEcccCCCchHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G--------ANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~--------v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
++-|+.+|||.|++....|.+. . -.++.+-|+.+++.++++++++..
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~ 87 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM 87 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence 3458999999999998888652 1 135555555444434444455443
No 182
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.18 E-value=0.004 Score=35.67 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~ 86 (106)
+.+|+|.++..+|+-.+++|+.+... ++.. +....+|.+..+|+.|++++.+++..+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~~----------sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPWR----------SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCCC----------CCCCccCEEEECCEEecChHHHHHHHH
Confidence 44899999999999999999765332 2221 223579999999999999998877543
No 183
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.13 E-value=0.0029 Score=39.81 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.3
Q ss_pred EEEEEcCCCchHHHHHHHHhh
Q 042938 13 VVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
++.|+.+|||.|......|.+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~ 41 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVE 41 (132)
T ss_pred EEEEECCCCchHHHHHHHHHH
Confidence 455889999999987766643
No 184
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.11 E-value=0.0017 Score=39.49 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=33.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+|||+|.+....|.+.. -....+-+. +.+.++..+.+++++. ..+|.++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~-~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGL-EAFPYVL 83 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCC-CCCcEEe
Confidence 56689999999998877776542 223334332 2333445556655543 4577664
No 185
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.08 E-value=0.0062 Score=41.27 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=41.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
+++|+.+ +|+|.+++-+|.++|++|+.++++..... ...+.+.+.+....||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcCCCCCEEEe
Confidence 5688877 69999999999999999999888764321 11123345576789999987
No 186
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.05 E-value=0.0029 Score=39.27 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++.|+.+|||.|.+....|.++
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHH
Confidence 5678999999999888777655
No 187
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.05 E-value=0.0022 Score=48.88 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=35.2
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR 73 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~ 73 (106)
++.|+.+|||+|+.+...|++.. +.+-.+|+|.++. + .....++ ..++|++ |.+|.
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~--~~~~~~~-I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E--FAKQELQ-LGSFPTILFFPKHS 439 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H--HHHHHcC-CCccceEEEEECCC
Confidence 56699999999999988885542 4455566665432 1 1112234 3678886 56663
No 188
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.05 E-value=0.0044 Score=48.34 Aligned_cols=59 Identities=7% Similarity=0.122 Sum_probs=34.4
Q ss_pred EEEEEcCCCchHHHHHHH-H------hhc-CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-E--CCeE
Q 042938 13 VVIFSKSECCICFSIQTL-I------CGF-GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-I--GQRL 74 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~-L------~~~-~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v--~g~~ 74 (106)
++.|+.+||++|+...+. + +++ ++.+-.+|++.++ ++.++.+++++. ..+|+++ + ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~~~~~l~~~~~v-~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--AEDVALLKHYNV-LGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--hhhHHHHHHcCC-CCCCEEEEECCCCCC
Confidence 345999999999987654 2 122 2333445555433 233345555554 7889874 4 4554
No 189
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.04 E-value=0.0031 Score=41.66 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++.|+.+|||.|++....+.+.
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 5668999999999887777554
No 190
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.96 E-value=0.0073 Score=37.71 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.4
Q ss_pred EEEEEcCCCchHHHHHHHHhh
Q 042938 13 VVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
++.|+.+|||.|++....|.+
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~ 42 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVE 42 (131)
T ss_pred EEEEECCCChHHHHHhHHHHH
Confidence 455889999999987766643
No 191
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0031 Score=42.49 Aligned_cols=68 Identities=10% Similarity=0.205 Sum_probs=45.0
Q ss_pred EEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938 16 FSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH 85 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~ 85 (106)
|+++.|.+ ++|-.|.-+|++|+++-|+-..+..+.-..+++.+...+||.+.+||..+-..--++...
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YL 78 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYL 78 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHH
Confidence 56788876 556666666777776666554333332235566677789999999998877665555543
No 192
>PTZ00102 disulphide isomerase; Provisional
Probab=96.93 E-value=0.0029 Score=47.53 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
+++++..++ ++.|+.+||++|+++...+.+ .+.++....||-..+. +...+++ ..++|++ |-+|
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~----~l~~~~~-i~~~Pt~~~~~~g 116 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM----ELAQEFG-VRGYPTIKFFNKG 116 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH----HHHHhcC-CCcccEEEEEECC
Confidence 445555454 577999999999988765543 2223444444433322 1333334 3778886 4566
Q ss_pred e
Q 042938 73 R 73 (106)
Q Consensus 73 ~ 73 (106)
.
T Consensus 117 ~ 117 (477)
T PTZ00102 117 N 117 (477)
T ss_pred c
Confidence 4
No 193
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.93 E-value=0.0017 Score=38.69 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=34.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEE
Q 042938 12 PVVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv 70 (106)
-+++|+.++|+.|..++..|.+.. +.+-.+|++..+. .+..++.. .++|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~------~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR------HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH------HHHHcCCChhhCCEEEE
Confidence 466788999999999999886643 3444555555322 33334542 28999853
No 194
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=96.92 E-value=0.0094 Score=34.42 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=42.6
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+..+.|.++..+|+..|++|+.++....+ . .+....+|.+.+||+.|++..-+...
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~---~~P~GkVP~L~~dg~vI~eS~aIl~y 70 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------F---MSPSGKVPFIRVGNQIVSEFGPIVQF 70 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------c---cCCCCcccEEEECCEEEeCHHHHHHH
Confidence 56889999999999999999988542211 1 12235799999999999988877654
No 195
>PRK11752 putative S-transferase; Provisional
Probab=96.89 E-value=0.01 Score=41.83 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=49.9
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC----eEeecc
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ----RLVGGP 78 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g----~~iGg~ 78 (106)
..+++.+|+.+ +|+|.+++-+|.++ |++|+.+.|+...... ..+.+.+.+...+||++..++ ..+...
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~-~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES 118 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQ-FSSGFVEINPNSKIPALLDRSGNPPIRVFES 118 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccc-cCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence 45579999865 99999999999997 8889888776532210 112334456668999998753 455555
Q ss_pred hHHHh
Q 042938 79 NQVMS 83 (106)
Q Consensus 79 ~~~~~ 83 (106)
..+..
T Consensus 119 ~AIl~ 123 (264)
T PRK11752 119 GAILL 123 (264)
T ss_pred HHHHH
Confidence 55544
No 196
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=96.83 E-value=0.026 Score=32.22 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=46.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEEC-CeEeecchHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFIG-QRLVGGPNQVMS 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv~-g~~iGg~~~~~~ 83 (106)
+.+|..++ .|..++-+|...|++|+.+.++.......- +.+.+.+.. ..+|.+..+ |..+-....+..
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~-~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKS-PEFLAINPMFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGS-HHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccc-hhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence 45666666 889999999999999999888754332111 233444555 799999999 888777665544
No 197
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.83 E-value=0.0042 Score=39.71 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=18.5
Q ss_pred HhhhhCCC--EEEEEcCCCchHHHHHHHH
Q 042938 5 TRMVNEKP--VVIFSKSECCICFSIQTLI 31 (106)
Q Consensus 5 ~~~~~~~~--v~vf~~~~Cp~C~~~~~~L 31 (106)
..+-++++ +++|+++|||+|++..+..
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 34444444 4558999999999887643
No 198
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.80 E-value=0.014 Score=39.15 Aligned_cols=30 Identities=13% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHH----hhcCCCceEEE
Q 042938 13 VVIFSKSECCICFSIQTLI----CGFGANPTVYE 42 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~ 42 (106)
++.|+.+|||.|.+....+ ++.++.+..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5568999999999776555 33455444443
No 199
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.78 E-value=0.0088 Score=44.48 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EEC
Q 042938 3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIG 71 (106)
Q Consensus 3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~ 71 (106)
.+.++++.++ ++.|+.+||++|++....+.+ .+-.+....||.+.. .+ ...+++ ..++|++ |.+
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~---l~~~~~-i~~~Pt~~~~~~ 84 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KD---LAQKYG-VSGYPTLKIFRN 84 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HH---HHHhCC-CccccEEEEEeC
Confidence 3456666665 566999999999988766643 232234444444333 12 333334 4778886 556
Q ss_pred CeE
Q 042938 72 QRL 74 (106)
Q Consensus 72 g~~ 74 (106)
|+.
T Consensus 85 g~~ 87 (462)
T TIGR01130 85 GED 87 (462)
T ss_pred Ccc
Confidence 654
No 200
>PLN02309 5'-adenylylsulfate reductase
Probab=96.71 E-value=0.0068 Score=46.18 Aligned_cols=54 Identities=13% Similarity=0.277 Sum_probs=33.1
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHH-HhCCCCCccEE--EECC
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQ-QLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~-~~~~~~tvP~i--fv~g 72 (106)
++.|+.||||+|+.+...+.++. +.+-.+|+|.. . .+ ... .++ ..++|++ |.+|
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-~-~~---la~~~~~-I~~~PTil~f~~g 432 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-Q-KE---FAKQELQ-LGSFPTILLFPKN 432 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-c-hH---HHHhhCC-CceeeEEEEEeCC
Confidence 67799999999999888886542 33444455421 1 12 222 234 3788887 4455
No 201
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=96.69 E-value=0.033 Score=32.34 Aligned_cols=70 Identities=11% Similarity=-0.022 Sum_probs=45.0
Q ss_pred EEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchH-HHHHHHHh----CCCCCccEEEECCeEeecchHHHhH
Q 042938 15 IFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQ-IERALQQL----GCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~-~~~~l~~~----~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+|+-..-+.|.+++-+|...|++|+.+.++..+.... -.+.+... ....++|++..||..+....-+...
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 4444455788999999999999999888875432100 01122111 1456999999998777666555443
No 202
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0063 Score=42.98 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=39.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCC-----ceEEEcccCCCchHHHHHHHHhCCCCCccE--EEECCeEe
Q 042938 13 VVIFSKSECCICFSIQTLICGFGAN-----PTVYELDQIPNGPQIERALQQLGCQPTVPA--VFIGQRLV 75 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~-----~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv~g~~i 75 (106)
+|=|+.+||..|+++..++..+.-. |-.+|||.-...+. . .+....|+ +|.||.-|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa------~-~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAA------T-NGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhh------h-cCcccCceEEEEecCeEe
Confidence 4559999999999999999887544 45677776544322 1 34466676 48899654
No 203
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.60 E-value=0.052 Score=34.01 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=42.1
Q ss_pred HHhhhhCCC--EEEEEc--CCCc---hHHHHHHHHhhcC--CCceEEEcccCCCchHHHHHHHHhCCCC--CccEE--EE
Q 042938 4 VTRMVNEKP--VVIFSK--SECC---ICFSIQTLICGFG--ANPTVYELDQIPNGPQIERALQQLGCQP--TVPAV--FI 70 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~--~~Cp---~C~~~~~~L~~~~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~--tvP~i--fv 70 (106)
+.+.++.++ +|-|.. |||. +|.++..-+.... +.+-.+|.+...+.++ .+...+++. . .+|+| |.
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~-~~L~~~y~I-~~~gyPTl~lF~ 88 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN-MELGERYKL-DKESYPVIYLFH 88 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh-HHHHHHhCC-CcCCCCEEEEEe
Confidence 456666666 466999 8898 8888876665443 5556667655333222 234344444 5 79986 67
Q ss_pred CCe
Q 042938 71 GQR 73 (106)
Q Consensus 71 ~g~ 73 (106)
+|.
T Consensus 89 ~g~ 91 (116)
T cd03007 89 GGD 91 (116)
T ss_pred CCC
Confidence 773
No 204
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.52 E-value=0.0074 Score=35.69 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=28.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHh
Q 042938 12 PVVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
-++.|+.+|||+|.+....|.+. ++.+-.+++|.. ..+.+.+++.+.
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~-~~~~~~~~~~~~ 75 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD-DPAAVKAFLKKY 75 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC-CHHHHHHHHHHc
Confidence 36778999999999776666443 233444455443 244455555443
No 205
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.01 Score=45.58 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHhhhhCCCE--EEEEcCCCchHHH-------HHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 4 VTRMVNEKPV--VIFSKSECCICFS-------IQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 4 ~~~~~~~~~v--~vf~~~~Cp~C~~-------~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
+.+.|..+.. +-|+.|||.+|.+ +.+.|.+.+-+...-.||...+. +...+++ .+.+|++ |.||
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~----~~~~~y~-v~gyPTlkiFrnG 109 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES----DLASKYE-VRGYPTLKIFRNG 109 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh----hhHhhhc-CCCCCeEEEEecC
Confidence 5566777764 5599999999985 44556666555556666665542 2333334 3778875 8888
Q ss_pred eE
Q 042938 73 RL 74 (106)
Q Consensus 73 ~~ 74 (106)
+.
T Consensus 110 ~~ 111 (493)
T KOG0190|consen 110 RS 111 (493)
T ss_pred Cc
Confidence 74
No 206
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.44 E-value=0.01 Score=36.49 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=20.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceE
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTV 40 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~ 40 (106)
-++.|+.+|||+|......|.+..-.+..
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~ 51 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPV 51 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCE
Confidence 46778999999999887777654333333
No 207
>PRK10542 glutathionine S-transferase; Provisional
Probab=96.41 E-value=0.018 Score=38.38 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhH
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSL 84 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~ 84 (106)
.+|+.++ +.+.+++-+|.++|++|+.+.|+.......-.+.+.+.+....+|++.+ ||..|-....+...
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHH
Confidence 4666543 3467888899999999998877754221000023445566789999986 66677666555553
No 208
>PTZ00102 disulphide isomerase; Provisional
Probab=96.41 E-value=0.0065 Score=45.68 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++.|+.+||++|+.....+.+.
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 5668999999999999888664
No 209
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.35 E-value=0.023 Score=36.02 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCceEEEcccCCCc----hHHHHHHHHhCCCCCccEEEECCeEe--ecchHHHhH
Q 042938 26 SIQTLICGFGANPTVYELDQIPNG----PQIERALQQLGCQPTVPAVFIGQRLV--GGPNQVMSL 84 (106)
Q Consensus 26 ~~~~~L~~~~v~~~~v~vd~~~~~----~~~~~~l~~~~~~~tvP~ifv~g~~i--Gg~~~~~~~ 84 (106)
.+...|.+.|++...+++.++|.. +.+.+.|...|. ..+|.++|||+.+ |.+-+..++
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~-e~LPitlVdGeiv~~G~YPt~eEl 94 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGA-EALPITLVDGEIVKTGRYPTNEEL 94 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G-GG-SEEEETTEEEEESS---HHHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCc-ccCCEEEECCEEEEecCCCCHHHH
Confidence 445677888999999999999875 337777776665 8999999999865 666554444
No 210
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.29 E-value=0.018 Score=35.76 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=32.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhc----C-CCceEEEccc-----CCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGF----G-ANPTVYELDQ-----IPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~----~-v~~~~v~vd~-----~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+|||+|.+....|.++ + -.+..+-|.. ..+.+.+++++++.+ .++|.+.
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~ 91 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYG--ITYPVAN 91 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcC--CCCCEEE
Confidence 5668999999999876666443 2 2234444432 123445666666544 3577543
No 211
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.28 E-value=0.047 Score=36.77 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCch--HHHHHHH-HhCCCCCccEEEECCeEeecchHHHh
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGP--QIERALQ-QLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~--~~~~~l~-~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.++++|+-+..+.|.+++-+|...|++|+.+.++.... . +..+... ..+....+|++.+||..+....-+..
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 34789998889999999999999999999987753221 1 1111111 23566799999999987776665544
No 212
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.27 E-value=0.013 Score=38.52 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=32.1
Q ss_pred EEEcCCCchHHHHH----HHHh---hcCCCceEEEcccCCCchHHHHHHHH
Q 042938 15 IFSKSECCICFSIQ----TLIC---GFGANPTVYELDQIPNGPQIERALQQ 58 (106)
Q Consensus 15 vf~~~~Cp~C~~~~----~~L~---~~~v~~~~v~vd~~~~~~~~~~~l~~ 58 (106)
.|+..|||.|+... ++++ +.+.+++++=|+.+.+.+++.+++..
T Consensus 39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~ 89 (157)
T KOG2501|consen 39 YFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE 89 (157)
T ss_pred EEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence 36779999999554 3333 34566999989988888777777764
No 213
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.15 E-value=0.044 Score=35.58 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.0
Q ss_pred EEEEEcCCCchHHHHHHHHhh
Q 042938 13 VVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
++.|+.+|||+|......|.+
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~ 85 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNE 85 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHH
Confidence 567889999999976655533
No 214
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.024 Score=37.53 Aligned_cols=19 Identities=16% Similarity=0.583 Sum_probs=16.8
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 042938 13 VVIFSKSECCICFSIQTLI 31 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L 31 (106)
+.+|.+++|+||.+.++-+
T Consensus 46 llmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 46 LLMFESNGCSYCERFKKDL 64 (182)
T ss_pred EEEEcCCCChHHHHHHHhh
Confidence 7899999999999887665
No 215
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.01 E-value=0.068 Score=32.70 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHH-HHHhhc------CCCceEEEcccC-CCchHHHHHHHHhCCCCCccEE-EE--
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQ-TLICGF------GANPTVYELDQI-PNGPQIERALQQLGCQPTVPAV-FI-- 70 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~-~~L~~~------~v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~i-fv-- 70 (106)
++.+-++++ ++.+..++|++|+... .+|... +-.|..+.+|.. +++.+ ....++ ...+|.+ |+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~---~~~~~~-~~~~P~~~~i~~ 85 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQR---FLQSYK-VDKYPHIAIIDP 85 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHH---HHHHhC-ccCCCeEEEEeC
Confidence 344444444 3456889999999874 355433 223544444443 23333 434444 3789987 45
Q ss_pred -CCeEe
Q 042938 71 -GQRLV 75 (106)
Q Consensus 71 -~g~~i 75 (106)
+|+.+
T Consensus 86 ~~g~~l 91 (114)
T cd02958 86 RTGEVL 91 (114)
T ss_pred ccCcEe
Confidence 45443
No 216
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.00 E-value=0.028 Score=36.33 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=53.3
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc---hHHHhHH
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP---NQVMSLH 85 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~---~~~~~~~ 85 (106)
....+++|..|+|.=|..-.+.|+..|++...++.+.... +++-+.--....+.=+..|||.+|-|- +++..+.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~a---lK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLA---LKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHH---HHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 3557999999999999999999999999888776665332 222211111124667899999999886 4555554
Q ss_pred HhC
Q 042938 86 VQN 88 (106)
Q Consensus 86 ~~g 88 (106)
+++
T Consensus 101 ~~~ 103 (149)
T COG3019 101 AEK 103 (149)
T ss_pred hCC
Confidence 443
No 217
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.91 E-value=0.045 Score=34.64 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=25.9
Q ss_pred EEEEEcC-CCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHH
Q 042938 13 VVIFSKS-ECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQ 58 (106)
Q Consensus 13 v~vf~~~-~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~ 58 (106)
++.|+.+ |||+|..-...|.++ ++.+..+..+.++. +.+++.+
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~ 82 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLKK 82 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH---HHHHHHh
Confidence 5668888 999999776555443 45554454444332 4455554
No 218
>PTZ00056 glutathione peroxidase; Provisional
Probab=95.89 E-value=0.034 Score=37.72 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=30.4
Q ss_pred EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEccc----C-CCchHHHHHHHHhCCCCCccEE
Q 042938 13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQ----I-PNGPQIERALQQLGCQPTVPAV 68 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~----~-~~~~~~~~~l~~~~~~~tvP~i 68 (106)
++.|+.+|||+|.+-...|.++ |+.+--+.++. . .+.+++++++++.+ .++|.+
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~--~~fpvl 108 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK--IKYNFF 108 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC--CCceee
Confidence 4568999999998655445443 34333333332 1 23345667766544 356654
No 219
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.071 Score=36.82 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=54.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
++.+|+.+.-|.|.++...+...|++|+.+.++.......-.+++ ..+...+||++.-+|-.+-....+...
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d~~~~l~eS~AI~~Y 73 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALEDGGLTLWESHAILRY 73 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEecCCeEEeeHHHHHHH
Confidence 568999999999999999999999999988666542211122344 556668999999998877777665554
No 220
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.76 E-value=0.012 Score=41.44 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=17.7
Q ss_pred CEEEEEcCCCchHHHHHHHHh
Q 042938 12 PVVIFSKSECCICFSIQTLIC 32 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~ 32 (106)
.|++|+-+.||||+++...+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 388999999999999866654
No 221
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.75 E-value=0.035 Score=35.75 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=30.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEc--cc----C-CCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYEL--DQ----I-PNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~v--d~----~-~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++.|+.+||| |.+-...|.++. -.+..+-| +. . .+.+.++++++...+ .++|.+.
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 4558999999 987666665431 22344433 32 1 223446667654222 4678653
No 222
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.051 Score=37.64 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCc--eEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee----cchHHHh
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANP--TVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG----GPNQVMS 83 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~--~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG----g~~~~~~ 83 (106)
.-.|-||+-.+|..|-..-+.|++.|..- +.++-...+. .+++ .+.-++|.||+||+.+- .++++.+
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f-----~~~~--~~V~SvP~Vf~DGel~~~dpVdp~~ies 82 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF-----LAFE--KGVISVPSVFIDGELVYADPVDPEEIES 82 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH-----HHhh--cceeecceEEEcCeEEEcCCCCHHHHHH
Confidence 34688999999999999999999999754 4444333222 1222 34589999999999763 3455555
Q ss_pred HHHhCC
Q 042938 84 LHVQNE 89 (106)
Q Consensus 84 ~~~~g~ 89 (106)
+. +|.
T Consensus 83 ~~-~G~ 87 (265)
T COG5494 83 IL-SGQ 87 (265)
T ss_pred HH-cCc
Confidence 43 453
No 223
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.55 E-value=0.062 Score=36.27 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=26.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhhc---CCCc------eEEEcccC
Q 042938 12 PVVIFSKSECCICFSIQTLICGF---GANP------TVYELDQI 46 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~---~v~~------~~v~vd~~ 46 (106)
.++-|+.+|||.|+.-..+|.++ |+++ ..+++|..
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 46779999999999877777554 6776 66776654
No 224
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=95.45 E-value=0.035 Score=39.48 Aligned_cols=52 Identities=8% Similarity=0.224 Sum_probs=42.0
Q ss_pred CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 21 CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.|||-++..+|...+++|+.++-... ..+...++|-|-.||++|-+.+-+..
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred ChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHHHHH
Confidence 67999999999999999998754432 11345689999999999999986654
No 225
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.41 E-value=0.023 Score=35.59 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=27.0
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEc
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYEL 43 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~v 43 (106)
.+++|++|.|+-|.-+.++|.++.-+|+.+-|
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 47899999999999999999888877766433
No 226
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.34 E-value=0.082 Score=33.11 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=31.3
Q ss_pred EEEEEcCCCch-HHHHHHHHhhc-------C---CCceEEEcccC-CCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFSKSECCI-CFSIQTLICGF-------G---ANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~~~~Cp~-C~~~~~~L~~~-------~---v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~if 69 (106)
+++|+.++||+ |.+....|.+. + +.+-.+.+|.. +....++++++.++ ..+|.+.
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~--~~~~~l~ 92 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG--PGWIGLT 92 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC--CCcEEEE
Confidence 66789999998 98655555332 2 44444444443 23344666666554 3555443
No 227
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.32 E-value=0.087 Score=37.49 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=48.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH-
Q 042938 13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL- 84 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~- 84 (106)
|+-++.+++|.|..+-..|..+. +.|-.+.....+.... +. ...+|+| |.+|..++.+-.+..+
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~-------f~-~~~LPtllvYk~G~l~~~~V~l~~~~ 221 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASEN-------FP-DKNLPTLLVYKNGDLIGNFVGLTDLL 221 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTT-------S--TTC-SEEEEEETTEEEEEECTGGGCT
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccC-------Cc-ccCCCEEEEEECCEEEEeEEehHHhc
Confidence 45589999999998887776652 4444444443332111 12 2568886 5799877765443322
Q ss_pred ---HHhCCchHHHHhcCcee
Q 042938 85 ---HVQNELGPLLVRAGAIW 101 (106)
Q Consensus 85 ---~~~g~L~~~L~~~g~~~ 101 (106)
.....|+.+|.+.|++.
T Consensus 222 g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 222 GDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp -TT--HHHHHHHHHTTTSSS
T ss_pred CCCCCHHHHHHHHHHcCCCC
Confidence 23347899999999863
No 228
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.12 E-value=0.18 Score=28.87 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhH
Q 042938 20 ECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSL 84 (106)
Q Consensus 20 ~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~ 84 (106)
-.|.|.++..+|+-.+.+ ++.+.... +.. +....+|.+.. +|+.+.|+.++.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~~----------Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PWL----------SPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CCc----------CCCCCCCEEEECCCcEEECHHHHHHh
Confidence 378999999999999998 66655443 221 33468999999 99999999998875
No 229
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.062 Score=33.93 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=20.1
Q ss_pred CCCchHHHHHHHHhh----c--CCCceEEEcccCCC
Q 042938 19 SECCICFSIQTLICG----F--GANPTVYELDQIPN 48 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~----~--~v~~~~v~vd~~~~ 48 (106)
||||+|.+|...+.+ . ++.+..++|...+.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCc
Confidence 889999999877744 2 34455566665543
No 230
>smart00594 UAS UAS domain.
Probab=95.08 E-value=0.28 Score=30.49 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHhhhhCCC--EEEEEcCCCchHHHHH-HHHhhcC------CCceEEEcccC-CCchHHHHHHHHhCCCCCccEEE
Q 042938 4 VTRMVNEKP--VVIFSKSECCICFSIQ-TLICGFG------ANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~-~~L~~~~------v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~if 69 (106)
++++.++.+ ++.+..++|++|.... .+|.... -.|-..-+|.. +++. +....++ ..++|.+.
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~---~l~~~~~-~~~~P~~~ 91 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ---RVSQFYK-LDSFPYVA 91 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHH---HHHHhcC-cCCCCEEE
Confidence 344445433 4557889999998753 3443322 13444333332 2222 2333334 37889874
No 231
>PLN02412 probable glutathione peroxidase
Probab=95.06 E-value=0.15 Score=33.43 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=14.5
Q ss_pred EEEEEcCCCchHHHHHHHHhh
Q 042938 13 VVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
++.|+.+|||.|.+-...|.+
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHH
Confidence 345889999999964444433
No 232
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.02 E-value=0.063 Score=39.94 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++.|+.+||++|......+.+.
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~ 389 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEEL 389 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 5669999999999888777553
No 233
>PTZ00256 glutathione peroxidase; Provisional
Probab=94.99 E-value=0.11 Score=34.66 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=28.8
Q ss_pred EEEEcCCCchHHHHHHHHhh-------cCCCceEEEccc----C-CCchHHHHHHHHhCCCCCccEE
Q 042938 14 VIFSKSECCICFSIQTLICG-------FGANPTVYELDQ----I-PNGPQIERALQQLGCQPTVPAV 68 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~----~-~~~~~~~~~l~~~~~~~tvP~i 68 (106)
++++.+|||+|.+-...|.+ .|+.+--+.++. . .+..++.+++.+..+ .++|.+
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~ 111 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLF 111 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCc
Confidence 45689999999975544443 244443444332 1 122445555543222 456765
No 234
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.93 E-value=0.051 Score=42.44 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=53.4
Q ss_pred HHHhhhhCCC---EEE-EEcCCCchHHHHHHHHhh-c-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-EC
Q 042938 3 MVTRMVNEKP---VVI-FSKSECCICFSIQTLICG-F-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IG 71 (106)
Q Consensus 3 ~~~~~~~~~~---v~v-f~~~~Cp~C~~~~~~L~~-~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~ 71 (106)
++++...+++ |++ |+.+||-.|+..++..-. - -..+.....|-..+.+++.+.|++++. -.+|.++ .+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~-~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGV-FGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCC-CCCCEEEEEC
Confidence 4566665554 444 999999999988766532 1 112344444544455567789998886 7888874 43
Q ss_pred --CeEeecchHHHhHHHhCCchHHHHhc
Q 042938 72 --QRLVGGPNQVMSLHVQNELGPLLVRA 97 (106)
Q Consensus 72 --g~~iGg~~~~~~~~~~g~L~~~L~~~ 97 (106)
|+..-. +-.....+.+.+.|+++
T Consensus 543 ~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcC---CcceecHHHHHHHHHHh
Confidence 332222 22233344566666554
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.89 E-value=0.12 Score=43.34 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=17.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++-|+.+|||.|++....|.++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4559999999999888777554
No 236
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=94.84 E-value=0.11 Score=33.37 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=14.7
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 042938 13 VVIFSKSECCICFSIQTLI 31 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L 31 (106)
+++|+.+|||+|.+-..-|
T Consensus 26 vv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EEEEeCCCCCchhhhHHHH
Confidence 5779999999998655444
No 237
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=94.61 E-value=0.16 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=15.0
Q ss_pred EEEEEcCCCchHHHHHHHHh
Q 042938 13 VVIFSKSECCICFSIQTLIC 32 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~ 32 (106)
++.|+.+|||.|..-...|.
T Consensus 103 vl~FwAswCp~c~~e~p~L~ 122 (236)
T PLN02399 103 LIVNVASKCGLTSSNYSELS 122 (236)
T ss_pred EEEEEcCCCcchHHHHHHHH
Confidence 56799999999986554443
No 238
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.60 E-value=0.1 Score=40.52 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHhhc
Q 042938 13 VVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
++.|+.+|||.|.+....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4559999999999988877654
No 239
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.44 E-value=0.049 Score=39.79 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCce
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPT 39 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~ 39 (106)
.+=|+.|||.+|++...+.++.|.+..
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elk 73 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELK 73 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchh
Confidence 566899999999999999999887654
No 240
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.061 Score=41.41 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCc
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANP 38 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~ 38 (106)
.+-|+.|||+||++...++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 56699999999999999998886544
No 241
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=94.28 E-value=0.25 Score=32.25 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=15.1
Q ss_pred EEEEEcCCCchHHHHHHHHhh
Q 042938 13 VVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
++.|+.++||.|.+...-|.+
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 566889999999865544433
No 242
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.12 Score=38.77 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=41.3
Q ss_pred HHhhhhCCCEEEEEcCCCchHHHHHHHH---hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938 4 VTRMVNEKPVVIFSKSECCICFSIQTLI---CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG 77 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L---~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg 77 (106)
++.+-..-...-|.+-+|..|..+.+.| .-++-..+-.-||-. -.++.....+. .+||+||.||+..|.
T Consensus 111 ik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Evear~I-MaVPtvflnGe~fg~ 182 (520)
T COG3634 111 IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVEARNI-MAVPTVFLNGEEFGQ 182 (520)
T ss_pred HHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHHhccc-eecceEEEcchhhcc
Confidence 3343334445667776777776665555 445555555555542 23344444443 899999999998774
No 243
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.08 E-value=0.17 Score=38.70 Aligned_cols=68 Identities=15% Similarity=0.276 Sum_probs=48.2
Q ss_pred cCCCchHHHHHHHHhhcC---CCceEEEcccCCCchH--HHHHHHHhCC-CCCccEEE---E----CCeEeecchHHHhH
Q 042938 18 KSECCICFSIQTLICGFG---ANPTVYELDQIPNGPQ--IERALQQLGC-QPTVPAVF---I----GQRLVGGPNQVMSL 84 (106)
Q Consensus 18 ~~~Cp~C~~~~~~L~~~~---v~~~~v~vd~~~~~~~--~~~~l~~~~~-~~tvP~if---v----~g~~iGg~~~~~~~ 84 (106)
+.+|||=.++.-+-+.+. -.|....|-..|+..+ +++..+..+. +..-|.|. + .|..+||++|+.++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 468999999987777764 3488888888887644 3333333332 35779985 3 57899999998875
Q ss_pred H
Q 042938 85 H 85 (106)
Q Consensus 85 ~ 85 (106)
.
T Consensus 81 ~ 81 (452)
T cd05295 81 A 81 (452)
T ss_pred H
Confidence 4
No 244
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.94 E-value=0.048 Score=34.34 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhh
Q 042938 11 KPVVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
..|++|+.+.||+|.+....+.+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHH
Confidence 35788999999999988776655
No 245
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=93.79 E-value=0.2 Score=30.46 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=29.0
Q ss_pred EEEEEcC-CCchHHHHHHHHhhc----CC-CceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 13 VVIFSKS-ECCICFSIQTLICGF----GA-NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 13 v~vf~~~-~Cp~C~~~~~~L~~~----~v-~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
++.|+.+ +||+|.....-|.+. .- .+..+-|..++. .++.+.++..+ ..+|.+.-
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccC
Confidence 4556666 999997665444332 11 233344443222 24555555544 46666654
No 246
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.57 E-value=0.18 Score=31.62 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=14.4
Q ss_pred EEEE-EcCCCchHHHHHHHHhh
Q 042938 13 VVIF-SKSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf-~~~~Cp~C~~~~~~L~~ 33 (106)
+++| ..+|||.|.+-...|.+
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHH
Confidence 3444 47899999976655544
No 247
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.75 Score=31.64 Aligned_cols=69 Identities=9% Similarity=-0.010 Sum_probs=52.5
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
...+++-+....|.-+|.+|.-.|++|+...+...+. . ..++.......+|++-|||..|...-.+...
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w---~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-W---EELKDKMPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-h---hhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence 4566777888899999999999999999998887654 1 1233334567899999999988776665543
No 248
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=93.33 E-value=0.46 Score=32.50 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
...+.+|.+..||.|......+..-+-++..+-|++..+...++......
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHc
Confidence 45689999999999998877777778888888888655555566665443
No 249
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=93.25 E-value=0.22 Score=30.36 Aligned_cols=69 Identities=13% Similarity=0.258 Sum_probs=43.3
Q ss_pred EEEcCCCchHHHHHHHHhhcCC--CceEEEcccCCCchHHHHHHHHhCC----CCCccEEEECCe-EeecchHHHhHHHh
Q 042938 15 IFSKSECCICFSIQTLICGFGA--NPTVYELDQIPNGPQIERALQQLGC----QPTVPAVFIGQR-LVGGPNQVMSLHVQ 87 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L~~~~v--~~~~v~vd~~~~~~~~~~~l~~~~~----~~tvP~ifv~g~-~iGg~~~~~~~~~~ 87 (106)
||.-..||.|.....++..... .++.+++...++.+ .+...+. ..+.-.+.-+|+ ...|.+-+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA----LLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh----HHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 4667889999999999988864 56777774333221 1111111 123334444776 89999988777644
No 250
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=93.21 E-value=0.24 Score=33.15 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=13.3
Q ss_pred CCEEE-EE-cCCCchHHHHHHHH
Q 042938 11 KPVVI-FS-KSECCICFSIQTLI 31 (106)
Q Consensus 11 ~~v~v-f~-~~~Cp~C~~~~~~L 31 (106)
+.++| |+ .+|||.|..-...|
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l 54 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDL 54 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHH
Confidence 34444 44 79999998644333
No 251
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=92.99 E-value=0.56 Score=29.10 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=27.6
Q ss_pred EEEEE-cCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938 13 VVIFS-KSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69 (106)
Q Consensus 13 v~vf~-~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if 69 (106)
+++|+ ..+||.|.....-|.+ .++.+-.+.+| +...++.+.++.+. .++|.+.
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d---~~~~~~~~~~~~~~-~~~~~l~ 86 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD---SPFSHKAWAEKEGG-LNFPLLS 86 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHhcccC-CCceEEE
Confidence 44445 6799999876544433 34444444433 22334455544432 5666543
No 252
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=92.94 E-value=0.053 Score=34.12 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=15.6
Q ss_pred CCCchHHHHHHHHhh----c--CCCceEEEcc
Q 042938 19 SECCICFSIQTLICG----F--GANPTVYELD 44 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~----~--~v~~~~v~vd 44 (106)
+|||.|.++...+.+ . +..+.++.|.
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG 67 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVG 67 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE--
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 789999999866643 2 2334455554
No 253
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.91 E-value=0.26 Score=32.70 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=32.3
Q ss_pred HHhhhhCCC-EEE-EEcCCCchHHHHH-HHHhh------cCCCceEEEcccCC--CchH-HHHHHHHhCCCCCccEE-EE
Q 042938 4 VTRMVNEKP-VVI-FSKSECCICFSIQ-TLICG------FGANPTVYELDQIP--NGPQ-IERALQQLGCQPTVPAV-FI 70 (106)
Q Consensus 4 ~~~~~~~~~-v~v-f~~~~Cp~C~~~~-~~L~~------~~v~~~~v~vd~~~--~~~~-~~~~l~~~~~~~tvP~i-fv 70 (106)
+..+-++++ |.| ++.++|.+|+.+. +.+.+ ++-.|..|-||.++ +.+. ...+....++....|.. |.
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfl 109 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFL 109 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEE
Confidence 334444444 444 5779999999665 34433 34446666666543 3332 22233333455677774 43
Q ss_pred --CCeEe
Q 042938 71 --GQRLV 75 (106)
Q Consensus 71 --~g~~i 75 (106)
+|+.+
T Consensus 110 tPdg~p~ 116 (163)
T PF03190_consen 110 TPDGKPF 116 (163)
T ss_dssp -TTS-EE
T ss_pred CCCCCee
Confidence 45554
No 254
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.87 E-value=0.087 Score=30.51 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.3
Q ss_pred EEcCCCchHHHHHHHHhhcC
Q 042938 16 FSKSECCICFSIQTLICGFG 35 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L~~~~ 35 (106)
|+.+|||+|......|.+..
T Consensus 39 f~~~~C~~C~~~~~~l~~~~ 58 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEELA 58 (127)
T ss_pred EEcCcCHHHHhhchhHHHHH
Confidence 36999999999988886653
No 255
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.82 E-value=0.11 Score=33.77 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=18.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhh
Q 042938 10 EKPVVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
...|+.|+...||+|.++...+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 345788999999999988766643
No 256
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.70 E-value=0.86 Score=28.29 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=26.0
Q ss_pred EEEEE-cCCCchHHHHHHHHh-------hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938 13 VVIFS-KSECCICFSIQTLIC-------GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV 68 (106)
Q Consensus 13 v~vf~-~~~Cp~C~~~~~~L~-------~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i 68 (106)
++.|+ ..+||.|......|. +.++ ..+-|..+ ....+.++++..+ ..+|.+
T Consensus 27 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d-~~~~~~~~~~~~~--~~~~~l 85 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPD-SVESHAKFAEKYG--LPFPLL 85 (140)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCC-CHHHHHHHHHHhC--CCceEE
Confidence 34455 578999986544432 2344 34444432 2244555655543 356643
No 257
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=92.06 E-value=0.14 Score=36.55 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=58.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHh
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQ 87 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~ 87 (106)
.++|--|..=.+.+++-.+.++|+.|+..+|+-... +.....+-+.+....||++.-+...|-..+.++...++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~g-eh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQG-EHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccc-cccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 788888999999999999999999999999986422 22223444556667899888888888999999887765
No 258
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=92.05 E-value=0.31 Score=34.25 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC
Q 042938 13 VVIFSKSECCICFSIQTLICGFG 35 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~ 35 (106)
|.+|++.+|..|--+-..|.++.
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a 67 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLA 67 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhc
Confidence 67899999999999888887764
No 259
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.04 E-value=0.34 Score=33.31 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHH-------HhhcCCCceEEEccc
Q 042938 14 VIFSKSECCICFSIQTL-------ICGFGANPTVYELDQ 45 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~-------L~~~~v~~~~v~vd~ 45 (106)
+.|..++||.|..-... +.+.|+..--+.+|.
T Consensus 34 ~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 34 FSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34677899999863333 334455544444444
No 260
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.69 E-value=0.19 Score=32.04 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=15.2
Q ss_pred CEEEEEcCCCchHHHHHHHH
Q 042938 12 PVVIFSKSECCICFSIQTLI 31 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L 31 (106)
.|++|....||+|.++-..+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHHHHH
Confidence 47889999999999775444
No 261
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=91.30 E-value=0.44 Score=30.00 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=13.8
Q ss_pred EEEEE-cCCCchHHHHHHHHhh
Q 042938 13 VVIFS-KSECCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~-~~~Cp~C~~~~~~L~~ 33 (106)
|++|+ .+|||.|.+....|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 34454 7899999866554433
No 262
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=91.29 E-value=0.46 Score=32.20 Aligned_cols=31 Identities=6% Similarity=-0.059 Sum_probs=19.3
Q ss_pred EEEcCCCchHHHHHHHH-------hhcCCCceEEEccc
Q 042938 15 IFSKSECCICFSIQTLI-------CGFGANPTVYELDQ 45 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~ 45 (106)
.|..++||.|..-..-| .+.|+.+--+.+|.
T Consensus 32 ~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 32 SHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 36778999998644333 44566655555554
No 263
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.25 E-value=0.22 Score=36.39 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=26.5
Q ss_pred hHHHhhhhCCCEEE--EEcCCCchHHHHHHHHhhc
Q 042938 2 DMVTRMVNEKPVVI--FSKSECCICFSIQTLICGF 34 (106)
Q Consensus 2 ~~~~~~~~~~~v~v--f~~~~Cp~C~~~~~~L~~~ 34 (106)
+.+..++..+.+++ |+.+|||+++..+.++.+.
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EA 38 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEA 38 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHH
Confidence 34567777777654 8999999999999999765
No 264
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=91.24 E-value=0.62 Score=30.51 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=14.6
Q ss_pred CCEEE-EE-cCCCchHHHHHHHHhh
Q 042938 11 KPVVI-FS-KSECCICFSIQTLICG 33 (106)
Q Consensus 11 ~~v~v-f~-~~~Cp~C~~~~~~L~~ 33 (106)
+.++| |+ .++||.|......|.+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHH
Confidence 34444 44 6899999976555533
No 265
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=91.16 E-value=0.93 Score=28.87 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=25.9
Q ss_pred CCCEE-EEEc-CCCchHHHHHHHH-------hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938 10 EKPVV-IFSK-SECCICFSIQTLI-------CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV 68 (106)
Q Consensus 10 ~~~v~-vf~~-~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i 68 (106)
.+.++ .|+. .+||.|......| .+.++.+--+.+| ....+++++++.+ .++|.+
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d---~~~~~~~~~~~~~--~~~~~l 92 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD---KPEKLSRFAEKEL--LNFTLL 92 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHhC--CCCeEE
Confidence 34444 4443 4799997543333 3334444333333 2244555555443 356644
No 266
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=0.4 Score=35.55 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ 72 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g 72 (106)
..-++.|..|||++|.+....+.+.. -....-.||..... +...+ .+...+|++ |-.|
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~----~~~~~-y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK----DLCEK-YGIQGFPTLKVFRPG 111 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH----HHHHh-cCCccCcEEEEEcCC
Confidence 34588899999999998877766442 22334445543332 23333 334778887 4455
No 267
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.71 E-value=0.65 Score=29.52 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=17.8
Q ss_pred CCCCccEEEECCeEeecchHHHhH
Q 042938 61 CQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 61 ~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+...+|++||||+.+.|..++.++
T Consensus 133 ~i~~tPt~~inG~~~~~~~~~~~l 156 (162)
T PF13462_consen 133 GITGTPTFFINGKYVVGPYTIEEL 156 (162)
T ss_dssp T-SSSSEEEETTCEEETTTSHHHH
T ss_pred CCccccEEEECCEEeCCCCCHHHH
Confidence 348999999999999876554443
No 268
>PRK13190 putative peroxiredoxin; Provisional
Probab=90.51 E-value=0.61 Score=31.61 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=11.6
Q ss_pred EEcCCCchHHHHHHHH
Q 042938 16 FSKSECCICFSIQTLI 31 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L 31 (106)
|..++||.|..-...|
T Consensus 35 ~p~~~cp~C~~El~~l 50 (202)
T PRK13190 35 HPADFTPVCTTEFIAF 50 (202)
T ss_pred EcCCCCCCCHHHHHHH
Confidence 6789999998544334
No 269
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=89.57 E-value=1.1 Score=29.34 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=20.7
Q ss_pred CCCCCccEEEECCeEeecchHHHhH
Q 042938 60 GCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 60 ~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
.+...+|++++||+.+-|.+.+..+
T Consensus 163 ~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 163 RGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred cCCCcCCeEEECCeeecccccHHHH
Confidence 3458999999999999998877654
No 270
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.56 E-value=0.91 Score=35.35 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=33.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+|+.+.|++|..++++|++.. ++++.+|.+.+.+ ..++++ ...+|.+.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~------~~~~~~-v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE------SETLPK-ITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh------hHhhcC-CCcCCEEEE
Confidence 356688899999999999998853 3444444433322 222334 356788765
No 271
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=89.30 E-value=0.78 Score=28.78 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=13.9
Q ss_pred EEEEEcCC-CchHHHHHHHHhh
Q 042938 13 VVIFSKSE-CCICFSIQTLICG 33 (106)
Q Consensus 13 v~vf~~~~-Cp~C~~~~~~L~~ 33 (106)
|+.|+.++ ||+|.+-...|.+
T Consensus 30 vl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 30 VISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred EEEEEcCCCCCcCHHHHHHHHH
Confidence 44456666 7999876655543
No 272
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=89.11 E-value=1.9 Score=30.17 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=52.7
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEE---EcccCCCchHHHHHHHHhCCCCCccE--EEECCeEeecchHHHh----
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVY---ELDQIPNGPQIERALQQLGCQPTVPA--VFIGQRLVGGPNQVMS---- 83 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v---~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv~g~~iGg~~~~~~---- 83 (106)
+|..+.++-+-|...-..+.-+..+|..+ .+.....+.. ..+ +. ..+|+ |+-||+.||.|-.+.+
T Consensus 163 ~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas--~~F---~~-n~lP~LliYkgGeLIgNFv~va~qlge 236 (273)
T KOG3171|consen 163 VVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGAS--DRF---SL-NVLPTLLIYKGGELIGNFVSVAEQLGE 236 (273)
T ss_pred EEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccch--hhh---cc-cCCceEEEeeCCchhHHHHHHHHHHhh
Confidence 34466788888888887777776665433 3333222221 121 22 45666 5679999999976543
Q ss_pred HHHhCCchHHHHhcCce
Q 042938 84 LHVQNELGPLLVRAGAI 100 (106)
Q Consensus 84 ~~~~g~L~~~L~~~g~~ 100 (106)
-+-.|+|...|++-|.+
T Consensus 237 dffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 237 DFFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhhhhHHHHHHHcCCC
Confidence 44578899999988874
No 273
>PRK13189 peroxiredoxin; Provisional
Probab=88.85 E-value=1.1 Score=31.01 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHH-------HhhcCCCceEEEccc
Q 042938 15 IFSKSECCICFSIQTL-------ICGFGANPTVYELDQ 45 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~-------L~~~~v~~~~v~vd~ 45 (106)
.|..++||.|..-... |.+.|+..--+.+|.
T Consensus 42 f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 42 SHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3678999999853333 344455544444443
No 274
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.74 E-value=1 Score=30.92 Aligned_cols=33 Identities=6% Similarity=-0.085 Sum_probs=20.4
Q ss_pred EEEcCCCchHHHHHHHH-------hhcCCCceEEEcccCC
Q 042938 15 IFSKSECCICFSIQTLI-------CGFGANPTVYELDQIP 47 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~~~ 47 (106)
.|..++||.|..-...| .+.|+.+--+.+|...
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~ 79 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI 79 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 46789999998644444 3446655555555443
No 275
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=86.95 E-value=1.3 Score=27.65 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.7
Q ss_pred CCCCccEEEECCeEeecchHHHhH
Q 042938 61 CQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 61 ~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+...+|+++++|+.+-|..+...+
T Consensus 126 gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 126 GITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred CCCcCCeEEECCEEecCCCCHHHH
Confidence 457899999999999998766554
No 276
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=86.50 E-value=1.5 Score=29.53 Aligned_cols=17 Identities=18% Similarity=0.127 Sum_probs=11.5
Q ss_pred CEEE-EE-cCCCchHHHHH
Q 042938 12 PVVI-FS-KSECCICFSIQ 28 (106)
Q Consensus 12 ~v~v-f~-~~~Cp~C~~~~ 28 (106)
.+++ |+ .++||.|..-.
T Consensus 33 ~vvL~F~P~~~~p~C~~el 51 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred eEEEEEECCCCCCcCHHHH
Confidence 4444 45 79999998643
No 277
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=86.25 E-value=3.9 Score=27.45 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=31.4
Q ss_pred EEEEEcCCCchHHHHH---HHHhhcC-CCceEEEc--cc----C-CCchHHHHHHHHhCCCCCccEE---EECCe
Q 042938 13 VVIFSKSECCICFSIQ---TLICGFG-ANPTVYEL--DQ----I-PNGPQIERALQQLGCQPTVPAV---FIGQR 73 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~---~~L~~~~-v~~~~v~v--d~----~-~~~~~~~~~l~~~~~~~tvP~i---fv~g~ 73 (106)
+++|+.++|++|.... ++.++++ -.+..+-+ ++ . .+..+++++++...+ .++|.+ -++|.
T Consensus 29 LVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 29 LIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEVNGE 102 (183)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEccCCC
Confidence 5678999999997432 2223322 22444433 32 1 223446666542233 578865 26665
No 278
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=86.07 E-value=3.4 Score=25.41 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=38.5
Q ss_pred HHHhhhh---CCCEEEEEcCC-CchHHHHHHHHhhc----C--CCceEEEcccCCC-chHHHHHHHHhCCCCCccEE--E
Q 042938 3 MVTRMVN---EKPVVIFSKSE-CCICFSIQTLICGF----G--ANPTVYELDQIPN-GPQIERALQQLGCQPTVPAV--F 69 (106)
Q Consensus 3 ~~~~~~~---~~~v~vf~~~~-Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~i--f 69 (106)
.+.+++. ..+++||=-++ ||-+..+.+-|++. . +++-++||-..-. ...+.+. ++..-.-||+ +
T Consensus 9 ql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~---~~V~HeSPQ~ili 85 (105)
T PF11009_consen 9 QLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAED---FGVKHESPQVILI 85 (105)
T ss_dssp HHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHH---HT----SSEEEEE
T ss_pred HHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHH---hCCCcCCCcEEEE
Confidence 3445554 45677776555 99999888777543 2 7788888765422 2233333 3554566776 4
Q ss_pred ECCeEeec
Q 042938 70 IGQRLVGG 77 (106)
Q Consensus 70 v~g~~iGg 77 (106)
-||+.+-.
T Consensus 86 ~~g~~v~~ 93 (105)
T PF11009_consen 86 KNGKVVWH 93 (105)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 68887643
No 279
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=85.97 E-value=5.7 Score=27.67 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=44.8
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchHHHHh--
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVR-- 96 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~-- 96 (106)
++-+|-.+++..|.++|.....+++...+. +.+...| ...=.|+|+| |..-.+...-++-.|.+.|++
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-~~Ie~~l------~~~d~IyVgG---GNTF~LL~~lke~gld~iIr~~v 115 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPL-AAIENKL------MKADIIYVGG---GNTFNLLQELKETGLDDIIRERV 115 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCH-HHHHHhh------hhccEEEECC---chHHHHHHHHHHhCcHHHHHHHH
Confidence 567899999999999999999888877554 3333333 2233566665 222244444444445555544
Q ss_pred -cCcee
Q 042938 97 -AGAIW 101 (106)
Q Consensus 97 -~g~~~ 101 (106)
.|.++
T Consensus 116 k~G~~Y 121 (224)
T COG3340 116 KAGTPY 121 (224)
T ss_pred HcCCce
Confidence 45544
No 280
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.97 E-value=1.7 Score=32.20 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhc
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGF 34 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~ 34 (106)
...++.|+.|||++|++....+.+.
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHH
Confidence 3458889999999999886666554
No 281
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=85.37 E-value=1.5 Score=27.27 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=28.9
Q ss_pred CchHHHHHHHHhhcCCCceEEE---cccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938 21 CCICFSIQTLICGFGANPTVYE---LDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~~v~---vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
||+|..+.-+|.....--..+| |+-.-=...+.+.+.+ ...+.|+++.++
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE--~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGE--ANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhCh--hccCCCEEEeCC
Confidence 9999999999988753222222 2221111223334322 246899988766
No 282
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=1.2 Score=31.16 Aligned_cols=72 Identities=8% Similarity=0.147 Sum_probs=46.6
Q ss_pred hHHHhhhhCCC----EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHH-HHhCCCCCccEE-
Q 042938 2 DMVTRMVNEKP----VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERAL-QQLGCQPTVPAV- 68 (106)
Q Consensus 2 ~~~~~~~~~~~----v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l-~~~~~~~tvP~i- 68 (106)
+...+....++ ++-|...|.|.|.+....+.++. ..|-.+||..-++..+ ++- ...++.++.|++
T Consensus 133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~--kfris~s~~srQLPT~i 210 (265)
T KOG0914|consen 133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAA--KFRISLSPGSRQLPTYI 210 (265)
T ss_pred hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHH--heeeccCcccccCCeEE
Confidence 34444454444 55678899999999988887764 4566799998877544 121 112456788875
Q ss_pred -EECCeEe
Q 042938 69 -FIGQRLV 75 (106)
Q Consensus 69 -fv~g~~i 75 (106)
|-+|+.+
T Consensus 211 lFq~gkE~ 218 (265)
T KOG0914|consen 211 LFQKGKEV 218 (265)
T ss_pred EEccchhh
Confidence 5566544
No 283
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=84.84 E-value=3.3 Score=26.53 Aligned_cols=66 Identities=14% Similarity=0.325 Sum_probs=38.9
Q ss_pred HHHhhhhCC--CEEE--EEcCCCchHHHHHHHHhhcCCC------ceEEEcccCCCchHHHHHHHHhCCCCCccE--EEE
Q 042938 3 MVTRMVNEK--PVVI--FSKSECCICFSIQTLICGFGAN------PTVYELDQIPNGPQIERALQQLGCQPTVPA--VFI 70 (106)
Q Consensus 3 ~~~~~~~~~--~v~v--f~~~~Cp~C~~~~~~L~~~~v~------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv 70 (106)
.+.++|... ++++ |+.++-|.|.+.-.+|.+.... .-.+|+|+-++..+ -+.- ...|. .|.
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~------~~~l-~~p~tvmfFf 85 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVK------MYEL-YDPPTVMFFF 85 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhh------hhcc-cCCceEEEEE
Confidence 355555433 3333 9999999999999999775322 23457775444332 2222 33343 477
Q ss_pred CCeEe
Q 042938 71 GQRLV 75 (106)
Q Consensus 71 ~g~~i 75 (106)
+++++
T Consensus 86 n~kHm 90 (142)
T KOG3414|consen 86 NNKHM 90 (142)
T ss_pred cCceE
Confidence 77665
No 284
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=84.73 E-value=6.8 Score=23.84 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCcc-EEEEC
Q 042938 4 VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVP-AVFIG 71 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP-~ifv~ 71 (106)
+.++-+...+.+++-+....-..+++++++.+++|..+.+|.... ....++ ...+| .+++|
T Consensus 47 l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~~-v~~~P~~~~ld 108 (127)
T cd03010 47 LMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR------VGIDLG-VYGVPETFLID 108 (127)
T ss_pred HHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch------HHHhcC-CCCCCeEEEEC
Confidence 334434444666555544555677889999999887666664322 222234 46789 56675
No 285
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=84.72 E-value=4 Score=28.03 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHhhhhCCCEEE-EEcCCCchH---HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe---E
Q 042938 4 VTRMVNEKPVVI-FSKSECCIC---FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR---L 74 (106)
Q Consensus 4 ~~~~~~~~~v~v-f~~~~Cp~C---~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~---~ 74 (106)
+..-.++.+|++ |+.+.---| .+=...|....++-..+-|+....+ +|...-....+|.| |.||. +
T Consensus 78 ~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-----Flv~kL~IkVLP~v~l~k~g~~~D~ 152 (211)
T KOG1672|consen 78 FEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-----FLVTKLNIKVLPTVALFKNGKTVDY 152 (211)
T ss_pred HHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-----eeeeeeeeeEeeeEEEEEcCEEEEE
Confidence 333334555544 899885555 4556677777766555544443221 22222223778876 78885 5
Q ss_pred eecchHHHh--HHHhCCchHHHHhcCce
Q 042938 75 VGGPNQVMS--LHVQNELGPLLVRAGAI 100 (106)
Q Consensus 75 iGg~~~~~~--~~~~g~L~~~L~~~g~~ 100 (106)
|.||+++=. -.....|+..|...|++
T Consensus 153 iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 153 VVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 667766521 12333566677666653
No 286
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.29 E-value=1.3 Score=30.08 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCCCccEEEECCeEeecchH
Q 042938 61 CQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 61 ~~~tvP~ifv~g~~iGg~~~ 80 (106)
+...+|+++|||+++-+...
T Consensus 164 gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 164 QLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred CCCCCCEEEECCEEEEcccc
Confidence 45899999999998766544
No 287
>PRK15000 peroxidase; Provisional
Probab=84.22 E-value=3.7 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=12.9
Q ss_pred CCCEEEEEc--CCCchHHHHHHHH
Q 042938 10 EKPVVIFSK--SECCICFSIQTLI 31 (106)
Q Consensus 10 ~~~v~vf~~--~~Cp~C~~~~~~L 31 (106)
.+.+++|.- .+||.|..-..-|
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l 57 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAF 57 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHH
Confidence 344555444 4799998644434
No 288
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.74 E-value=0.47 Score=37.29 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=35.2
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCC----ceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGAN----PTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~----~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.++=|..+||++|++....+++.... ...+-|...+.+++.-..+-+-.+.+.+|.++-
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry 122 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY 122 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence 46668889999999999888776432 223333333333332223333344588888843
No 289
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=83.57 E-value=4.1 Score=25.69 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=29.0
Q ss_pred CCCchHH-----------HHHHHHhhcCCCce--EEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938 19 SECCICF-----------SIQTLICGFGANPT--VYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV 75 (106)
Q Consensus 19 ~~Cp~C~-----------~~~~~L~~~~v~~~--~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i 75 (106)
.+|+.|. +++..|..+|+... .+.++..+ ...+ .-+.|.|.+||+.|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~-------~~~~---~~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEE-------FARQ---PLESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHH-------Hhhc---ccCCCeeeECCEeh
Confidence 3799997 34455667787654 44444321 1111 15789999999976
No 290
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=83.48 E-value=4.7 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=51.1
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh---CC-------------------CCCccEE--E
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL---GC-------------------QPTVPAV--F 69 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~---~~-------------------~~tvP~i--f 69 (106)
++=|++.-+.-+++..+|++.|++|+..-++.+-..+.+.++.+.. +. ..++|+| -
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVP 87 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVP 87 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEecc
Confidence 3345566788899999999999999998888887776666665432 11 1455665 4
Q ss_pred ECCeEeecchHHHhHH
Q 042938 70 IGQRLVGGPNQVMSLH 85 (106)
Q Consensus 70 v~g~~iGg~~~~~~~~ 85 (106)
+..+.++|.|.+.+..
T Consensus 88 v~s~~L~GlDSL~SiV 103 (162)
T COG0041 88 VQSKALSGLDSLLSIV 103 (162)
T ss_pred CccccccchHHHHHHh
Confidence 5667788888776543
No 291
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=83.46 E-value=3.4 Score=27.00 Aligned_cols=46 Identities=13% Similarity=-0.058 Sum_probs=24.0
Q ss_pred EEEEEcCC-CchHHHHHHHHhhcC---CCceEEEcccCCCchHHHHHHHHh
Q 042938 13 VVIFSKSE-CCICFSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 13 v~vf~~~~-Cp~C~~~~~~L~~~~---v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
|+.|+.+| ||.|.+-..-|.+.. -.+..+-|..++ ....++++...
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~-~~~~~~f~~~~ 97 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL-PFAQKRFCGAE 97 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC-HHHHHHHHHhC
Confidence 55677777 999987655554321 134444444332 22344455443
No 292
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=83.22 E-value=3.4 Score=29.44 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=20.6
Q ss_pred hCCCEEEE--EcCCCchHHHHHH-------HHhhcCCCceEEEccc
Q 042938 9 NEKPVVIF--SKSECCICFSIQT-------LICGFGANPTVYELDQ 45 (106)
Q Consensus 9 ~~~~v~vf--~~~~Cp~C~~~~~-------~L~~~~v~~~~v~vd~ 45 (106)
....+++| -.++||.|..-.. -+.+.|+..--+.+|.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44455554 4689999986333 3344455544444443
No 293
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.63 E-value=0.37 Score=33.82 Aligned_cols=61 Identities=11% Similarity=0.276 Sum_probs=41.2
Q ss_pred hhhhCCCEEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCe
Q 042938 6 RMVNEKPVVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQR 73 (106)
Q Consensus 6 ~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~ 73 (106)
+++...-++.|..||||.|...+..|.+. ++...++|+..++-..- ++. ....|+|+ .||+
T Consensus 36 ~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsG------RF~-vtaLptIYHvkDGe 105 (248)
T KOG0913|consen 36 ELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSG------RFL-VTALPTIYHVKDGE 105 (248)
T ss_pred hhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccce------eeE-EEecceEEEeeccc
Confidence 34444446778999999999999888664 56677888887775321 111 24578885 5664
No 294
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=81.41 E-value=1.4 Score=28.91 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=22.4
Q ss_pred CEEEEEcCCCchHHHHHHHH----hhc-CCCceEEEcc
Q 042938 12 PVVIFSKSECCICFSIQTLI----CGF-GANPTVYELD 44 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L----~~~-~v~~~~v~vd 44 (106)
+|++|+...||||-.+...| ... +++++..-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 37899999999997665444 445 6665554443
No 295
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=80.97 E-value=12 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=30.9
Q ss_pred CchHHHHHHHHhh----cC---CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938 21 CCICFSIQTLICG----FG---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP 78 (106)
Q Consensus 21 Cp~C~~~~~~L~~----~~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~ 78 (106)
+|.+..+.-+|.+ ++ +.+-.+|+|.+++ +....+..++|++ |-||+.+|..
T Consensus 48 ~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-------LA~~fgV~siPTLl~FkdGk~v~~i 107 (132)
T PRK11509 48 TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-------IGDRFGVFRFPATLVFTGGNYRGVL 107 (132)
T ss_pred CCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-------HHHHcCCccCCEEEEEECCEEEEEE
Confidence 7777766655544 33 3355566665543 2223445889986 7899888654
No 296
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=79.78 E-value=4.7 Score=25.93 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=36.7
Q ss_pred hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchHHHHh
Q 042938 23 ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVR 96 (106)
Q Consensus 23 ~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~ 96 (106)
|-.++++.|.++|+++..+++..... +++.+.+. +.-.||+.| |....+.+..+.-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~-~~~~~~i~------~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRND-ADILEAIR------EADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGH-HHHHHHHH------HSSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCCh-HHHHHHHH------hCCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 34678999999998866666665422 24444442 344677665 333345555566667777765
No 297
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=79.22 E-value=6.8 Score=25.85 Aligned_cols=73 Identities=10% Similarity=0.121 Sum_probs=50.4
Q ss_pred EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC----------------------CCCCccEE--E
Q 042938 14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG----------------------CQPTVPAV--F 69 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~----------------------~~~tvP~i--f 69 (106)
++=+.+.=|++.++...|+++|++|+..-...+-....+.++++... +..+.|+| -
T Consensus 4 imGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP 83 (156)
T TIGR01162 4 IMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVP 83 (156)
T ss_pred EECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEec
Confidence 33455778999999999999999998777777766666666665421 12456665 2
Q ss_pred ECCeEeecchHHHhHHH
Q 042938 70 IGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 70 v~g~~iGg~~~~~~~~~ 86 (106)
+.....+|.|.+.+...
T Consensus 84 ~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 84 VPSKALSGLDSLLSIVQ 100 (156)
T ss_pred CCccCCCCHHHHHHHhc
Confidence 34445778887777655
No 298
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=79.09 E-value=15 Score=23.79 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=42.0
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhcCCC--ceEEEcccCCCchHHHHHHHHhCCCCCcc--EEE-ECCeEeecchHHHh
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGFGAN--PTVYELDQIPNGPQIERALQQLGCQPTVP--AVF-IGQRLVGGPNQVMS 83 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP--~if-v~g~~iGg~~~~~~ 83 (106)
+....+|+.--.||.|.....+|.+..-. +...++-..+. .. .+...+..+.-+ .++ -+|+..-|.|-+.+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-~~---~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~ 81 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-QA---LLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIR 81 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-hh---HHhhcCCChhhhheeeEecCCceEeccHHHHH
Confidence 34567888889999999999999877544 44444433332 22 333333322212 233 45677777775554
Q ss_pred H
Q 042938 84 L 84 (106)
Q Consensus 84 ~ 84 (106)
.
T Consensus 82 i 82 (137)
T COG3011 82 I 82 (137)
T ss_pred H
Confidence 3
No 299
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=78.65 E-value=1.5 Score=29.74 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=16.7
Q ss_pred CCCEEEEEcCCCchHHHHHHH
Q 042938 10 EKPVVIFSKSECCICFSIQTL 30 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~ 30 (106)
...|+-|..-.||+|.+....
T Consensus 38 ~~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CCeEEEEeCCCCccHHHhccc
Confidence 345888999999999986543
No 300
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=77.73 E-value=2 Score=26.23 Aligned_cols=16 Identities=25% Similarity=0.442 Sum_probs=14.4
Q ss_pred CEEEEEcCCCchHHHH
Q 042938 12 PVVIFSKSECCICFSI 27 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~ 27 (106)
+|.||+.+-||+|.+.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5899999999999875
No 301
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=77.07 E-value=5.8 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.9
Q ss_pred CCCCCccEEEECCe-EeecchHHHhH
Q 042938 60 GCQPTVPAVFIGQR-LVGGPNQVMSL 84 (106)
Q Consensus 60 ~~~~tvP~ifv~g~-~iGg~~~~~~~ 84 (106)
.+...+|.++|||+ .+-|.+.+..+
T Consensus 163 ~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 163 LGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp TTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred cCCcccCEEEECCEEEEECCCCHHHH
Confidence 34589999999999 78888766554
No 302
>PRK00766 hypothetical protein; Provisional
Probab=76.89 E-value=5.3 Score=27.26 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch--HHHhHH
Q 042938 35 GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN--QVMSLH 85 (106)
Q Consensus 35 ~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~--~~~~~~ 85 (106)
|+-+..+.+|-.+..+.+.+.+...-..+.+=.|+++|-.+|||+ |+..++
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD~~~l~ 94 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVDIEELY 94 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEEecHHHHH
Confidence 344677888887777766666544222246777899999999997 444444
No 303
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=76.04 E-value=7 Score=26.53 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=37.2
Q ss_pred CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch--HHHhHH
Q 042938 35 GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN--QVMSLH 85 (106)
Q Consensus 35 ~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~--~~~~~~ 85 (106)
++.++.+++|-.+..+.+.+....... ..+-.|+.+|-.+|||+ |+.+++
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~v~~~~~-~~~rvVlLdGIt~aGFNivDi~~l~ 92 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDMVNRSKR-RDLRVVLLDGITFAGFNIVDIEALY 92 (185)
T ss_pred eeEEEEEEecCchHHHHHHHHHHHhhc-ccccEEEECCeeeccceEecHHHHH
Confidence 455778899988777777666665554 33888999999999997 555555
No 304
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.11 E-value=5.6 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCCCccEEEECCeEeecchH
Q 042938 61 CQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 61 ~~~tvP~ifv~g~~iGg~~~ 80 (106)
+...+|+++|||+.+-+...
T Consensus 140 gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 140 KITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred CCCCCCeEEECCEEEEChhh
Confidence 45899999999997655443
No 305
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=73.99 E-value=29 Score=25.24 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC---------CCCccEEEECCe---------------Eeecch
Q 042938 24 CFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC---------QPTVPAVFIGQR---------------LVGGPN 79 (106)
Q Consensus 24 C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~---------~~tvP~ifv~g~---------------~iGg~~ 79 (106)
|.+++.+=+.++.....+--.+....++..+++++++. +.++|.+..+|. +-|.-+
T Consensus 39 ~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~ 118 (300)
T cd00897 39 VQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGD 118 (300)
T ss_pred HHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccCeEEEecCCcccCccccCccccccCCCcceeeccCCCch
Confidence 44444444445555444444444444455556655532 245565554331 234445
Q ss_pred HHHhHHHhCCchHHHHhcCceeec
Q 042938 80 QVMSLHVQNELGPLLVRAGAIWLW 103 (106)
Q Consensus 80 ~~~~~~~~g~L~~~L~~~g~~~~~ 103 (106)
-..++..+|-|+++ .+.|..|++
T Consensus 119 i~~aL~~sG~L~~l-~~~G~~yi~ 141 (300)
T cd00897 119 IFESLYNSGLLDTL-LAQGKEYLF 141 (300)
T ss_pred HHHHHHHCCcHHHH-HhcCCEEEE
Confidence 56778888888775 556666554
No 306
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=73.84 E-value=8.3 Score=25.87 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=17.0
Q ss_pred EEEE-cCCCchHHHHHHHH-------hhcCCCceEEEccc
Q 042938 14 VIFS-KSECCICFSIQTLI-------CGFGANPTVYELDQ 45 (106)
Q Consensus 14 ~vf~-~~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~ 45 (106)
++|+ ..+||.|.....-| .+.|+.+--+.+|.
T Consensus 41 L~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 41 LFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred EEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3344 36688887543333 34466555555553
No 307
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=73.54 E-value=3.7 Score=22.82 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.4
Q ss_pred EEECCeEeecchHHHhH
Q 042938 68 VFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 68 ifv~g~~iGg~~~~~~~ 84 (106)
||+||.++|=.++-..+
T Consensus 1 VFlNG~~iG~~~~p~~l 17 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEEL 17 (63)
T ss_dssp EEETTEEEEEESSHHHH
T ss_pred CEECCEEEEEEcCHHHH
Confidence 79999999987765444
No 308
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=73.13 E-value=14 Score=27.56 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=6.5
Q ss_pred ccEEEECCeEe
Q 042938 65 VPAVFIGQRLV 75 (106)
Q Consensus 65 vP~ifv~g~~i 75 (106)
+|.+.+++.+.
T Consensus 344 IP~L~iE~D~~ 354 (377)
T TIGR03190 344 IPTLFLEFDIT 354 (377)
T ss_pred CCEEEEecCCC
Confidence 66666665544
No 309
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=72.92 E-value=4.6 Score=27.75 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=47.3
Q ss_pred CEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE--eecchHHHhH
Q 042938 12 PVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL--VGGPNQVMSL 84 (106)
Q Consensus 12 ~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~--iGg~~~~~~~ 84 (106)
.-.||.+ =.|++|.....+=.+.+.++....+ +++.+.+...+.... =.++-||++ .-+..++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~------~~I~~~i~~~~~~~~-~V~lTGGEP~~~~~l~~Ll~~ 94 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA------DEILADIKSLGYKAR-GVSLTGGEPLLQPNLLELLEL 94 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH------HHHHHHHHhcCCCcc-eEEEeCCcCCCcccHHHHHHH
Confidence 4566766 2388997655432222333332222 234444444332122 356788988 3366777776
Q ss_pred HHhCCchHHHHhcCceeecc
Q 042938 85 HVQNELGPLLVRAGAIWLWK 104 (106)
Q Consensus 85 ~~~g~L~~~L~~~g~~~~~~ 104 (106)
.++..++..|+.-|.++.|-
T Consensus 95 l~~~g~~~~lETngti~~~~ 114 (212)
T COG0602 95 LKRLGFRIALETNGTIPVWT 114 (212)
T ss_pred HHhCCceEEecCCCCccccc
Confidence 66556666666667777663
No 310
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=72.85 E-value=8.7 Score=25.31 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=16.6
Q ss_pred CCCCccEEEECCeE-eecchHHHh
Q 042938 61 CQPTVPAVFIGQRL-VGGPNQVMS 83 (106)
Q Consensus 61 ~~~tvP~ifv~g~~-iGg~~~~~~ 83 (106)
+...+|+++|||++ +.|..+...
T Consensus 172 gv~G~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 172 GISGVPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred CCCcCCEEEECCeEeecCCCCHHH
Confidence 45889999999874 567655433
No 311
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=8.5 Score=28.31 Aligned_cols=63 Identities=25% Similarity=0.488 Sum_probs=37.4
Q ss_pred hHHHhhhhCCC-----EEEEEc----CCCchHHHHHHHHhhc------------C--CCceEEEcccCCCchHHHHHHHH
Q 042938 2 DMVTRMVNEKP-----VVIFSK----SECCICFSIQTLICGF------------G--ANPTVYELDQIPNGPQIERALQQ 58 (106)
Q Consensus 2 ~~~~~~~~~~~-----v~vf~~----~~Cp~C~~~~~~L~~~------------~--v~~~~v~vd~~~~~~~~~~~l~~ 58 (106)
+.+..++++.+ |++|+. ..|+-|..+.+-++-. + +=|..+|+|+.|+ ..+.
T Consensus 48 d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~------~Fq~ 121 (331)
T KOG2603|consen 48 DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ------VFQQ 121 (331)
T ss_pred cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH------HHHH
Confidence 34555555444 677876 4599999876555321 1 1245667766443 3444
Q ss_pred hCCCCCccEEEEC
Q 042938 59 LGCQPTVPAVFIG 71 (106)
Q Consensus 59 ~~~~~tvP~ifv~ 71 (106)
.+- .++|.+++=
T Consensus 122 l~l-n~~P~l~~f 133 (331)
T KOG2603|consen 122 LNL-NNVPHLVLF 133 (331)
T ss_pred hcc-cCCCeEEEe
Confidence 454 789998764
No 312
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=72.28 E-value=7.4 Score=28.53 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=33.7
Q ss_pred EEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHH
Q 042938 16 FSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVM 82 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~ 82 (106)
..--+|..|.+++.+|+.+. +.|.-+||+... +++...+.. ...+|.|-+.| .+|.|++..
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~----L~~a~~~L~-~~~~p~l~v~~-l~gdy~~~l 145 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSE----LQRTLAELP-LGNFSHVRCAG-LLGTYDDGL 145 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHH----HHHHHHhhh-hccCCCeEEEE-EEecHHHHH
Confidence 44678999999999887763 345555665421 233333332 13455555544 344444443
No 313
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=71.46 E-value=6.5 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.575 Sum_probs=25.2
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhcCCC
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGFGAN 37 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~ 37 (106)
+..+|++|..++|+.+..+...|..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45689999999999999999999999876
No 314
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=71.12 E-value=20 Score=24.51 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=28.6
Q ss_pred EEEEEcCCCc-hHHH----HHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCC-CCCccEEEECC
Q 042938 13 VVIFSKSECC-ICFS----IQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGC-QPTVPAVFIGQ 72 (106)
Q Consensus 13 v~vf~~~~Cp-~C~~----~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g 72 (106)
++.|+-+.|| -|.. ...+++..+ .++..+.|.-+|+..- .+.++++.. ....+-+.+-|
T Consensus 71 lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt-p~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 71 LVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT-PEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred EEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC-HHHHHHHhcccCCCCeeeeeC
Confidence 4556668877 5653 334444443 4555555554444322 235555443 23333444444
No 315
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.09 E-value=5.9 Score=27.16 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCCccEEEECCeEeecchHH
Q 042938 61 CQPTVPAVFIGQRLVGGPNQV 81 (106)
Q Consensus 61 ~~~tvP~ifv~g~~iGg~~~~ 81 (106)
+...+|.+|++|..++|.-++
T Consensus 212 gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred CCCcCCeEEECCeeecCCCCH
Confidence 346778888888777776553
No 316
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=68.07 E-value=17 Score=23.37 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=12.0
Q ss_pred hCCCEEEEE--cCCCchHHHH
Q 042938 9 NEKPVVIFS--KSECCICFSI 27 (106)
Q Consensus 9 ~~~~v~vf~--~~~Cp~C~~~ 27 (106)
...++++|. ..+||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 344665554 4569999754
No 317
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=67.35 E-value=4 Score=26.72 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=16.0
Q ss_pred CEEEEEcCCCchHHHHHHHHh
Q 042938 12 PVVIFSKSECCICFSIQTLIC 32 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~ 32 (106)
.|.+|+-+.||+|-.+...|.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 478999999999975554443
No 318
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=66.95 E-value=17 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCchHHH-HHHHHhhcCCCceEEEcccC
Q 042938 20 ECCICFS-IQTLICGFGANPTVYELDQI 46 (106)
Q Consensus 20 ~Cp~C~~-~~~~L~~~~v~~~~v~vd~~ 46 (106)
.|-.|.. ++++|.+.+++...+.+...
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 4999965 48999999999999888773
No 319
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=66.79 E-value=35 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC-CCCccEEEECCeE
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC-QPTVPAVFIGQRL 74 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g~~ 74 (106)
.++.|.+.+....-.++...|.+.++++..+++..++....+.+.+..... ...+ .|=+||=.
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~-IIaiGGGS 86 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDV-VIAIGGGS 86 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCE-EEEecCch
Confidence 567766655555667788889999999888877767766666666554421 1222 44566533
No 320
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.25 E-value=7.8 Score=23.30 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=39.8
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--Cc----hHHHHHHHHhCCCCCccEEEECC
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NG----PQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~----~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
|.+++.++|.-..-++.+.+..++++..++..... .. ..+...+.+.........+|+|+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 57899999999999999999999887777654432 11 22444444432211245678887
No 321
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=66.12 E-value=16 Score=22.32 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=33.6
Q ss_pred chHHHHHHHHhhcCC------------CceEEEcccC-CCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 22 CICFSIQTLICGFGA------------NPTVYELDQI-PNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 22 p~C~~~~~~L~~~~v------------~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
|.-...+.+++..|. .|.....+.. -+..++.+.+.+...--.-|.|..|++.+-|++.
T Consensus 36 ~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG~~~ 107 (114)
T TIGR00014 36 PTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPNLSDQELLDAMVAHPILLERPIVVAGDGARIGRPP 107 (114)
T ss_pred cCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHHCcCcccCCeEEECCEEEEcCCH
Confidence 334555666665554 3333333321 1223455566555544677999999988888863
No 322
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=65.65 E-value=34 Score=22.20 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCcc-EEEEC--Ce
Q 042938 4 VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVP-AVFIG--QR 73 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP-~ifv~--g~ 73 (106)
++++.+. .+.+++-+....-...++++++.+.+|..+..|.... ....++ ...+| .+++| |+
T Consensus 85 l~~l~~~-~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~------~~~~~~-v~~~P~~~~id~~G~ 149 (173)
T TIGR00385 85 LNELAKD-GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK------LGLDLG-VYGAPETFLVDGNGV 149 (173)
T ss_pred HHHHHHc-CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc------hHHhcC-CeeCCeEEEEcCCce
Confidence 3444333 3444444443334556789999999887665554432 112223 36789 56675 65
No 323
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=64.55 E-value=4.3 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch--HHHhHH
Q 042938 36 ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN--QVMSLH 85 (106)
Q Consensus 36 v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~--~~~~~~ 85 (106)
+-+..+.+|-.+..+.+.+..... ..+.+=.|+.+|-.+|||+ |+.+++
T Consensus 37 v~~~~itvdG~DaT~~i~~m~~~~-~r~~i~~v~LdGit~agFNiiD~~~l~ 87 (187)
T PF01949_consen 37 VAFGRITVDGMDATEAIIEMVKRL-FRPDIRVVMLDGITFAGFNIIDIERLY 87 (187)
T ss_dssp EEEEEE-TT-S-HHHHHHHHHCCT-TTTTEEEEEESSSEETTTEE--HHHHH
T ss_pred EEEEEEEECCchHHHHHHHHHHhc-ccCcceEEEECCEeEEeeEEecHHHHH
Confidence 446677788777666666665432 2356667899999999997 455554
No 324
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=63.93 E-value=15 Score=20.02 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=27.2
Q ss_pred EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR 73 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~ 73 (106)
+.+|+.++=..+..++.+|++.|+++...+-..... . .. .+..+.+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~------~-g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY------A-GE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh------h-cc-cCccCceEEEECHH
Confidence 356676666678899999999999998765443322 0 00 22234478888764
No 325
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=63.74 E-value=14 Score=28.32 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.0
Q ss_pred hhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcc
Q 042938 7 MVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELD 44 (106)
Q Consensus 7 ~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd 44 (106)
+...+.|++=.+ ++|-||.-++..|...|.+.+.+++-
T Consensus 213 lFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~i 255 (583)
T KOG2454|consen 213 LFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVI 255 (583)
T ss_pred HhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhee
Confidence 344556666433 77999999999999999988777653
No 326
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.66 E-value=3.8 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=15.9
Q ss_pred CEEEEEcCCCchHHHHHHHHhh
Q 042938 12 PVVIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~ 33 (106)
.|.+|+-.-||+|--.++.|++
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~k 28 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEK 28 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHH
Confidence 5788999999999755444433
No 327
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.47 E-value=38 Score=27.51 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCCEEE-EEcCCCchHHHH-HHHH------hhcCCCceEEEcccC--CCchH-HHHHHHHhCCCCCccEE
Q 042938 10 EKPVVI-FSKSECCICFSI-QTLI------CGFGANPTVYELDQI--PNGPQ-IERALQQLGCQPTVPAV 68 (106)
Q Consensus 10 ~~~v~v-f~~~~Cp~C~~~-~~~L------~~~~v~~~~v~vd~~--~~~~~-~~~~l~~~~~~~tvP~i 68 (106)
..||.+ .+-++|.+|+-+ ++-+ +-+|-.|.-|.||.. |+.++ ..++.+.++|+...|..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLt 112 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLT 112 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCcee
Confidence 345544 456899999844 3333 224555666666654 55555 34455556777888874
No 328
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=63.45 E-value=19 Score=23.56 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=30.4
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
+.=|++.+++..|+++|++|+..-+..+-..+++.++++..
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 45789999999999999999877667676666677776665
No 329
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.35 E-value=13 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.299 Sum_probs=8.2
Q ss_pred EEEEcCCCchHHHHHHHH
Q 042938 14 VIFSKSECCICFSIQTLI 31 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L 31 (106)
++|..+.||||+++...+
T Consensus 123 ~~f~~~~~~~~~~a~~~~ 140 (244)
T COG1651 123 FPFLDPACPYCRRAAQAA 140 (244)
T ss_pred eecCCCCcHHHHHHHHHH
Confidence 334444555554444433
No 330
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=63.27 E-value=38 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.342 Sum_probs=24.5
Q ss_pred EEEEEcCCCc-hHHHHH-------HHHhhcCCCceEE--EcccCCCc-hHHHHHHHHhC
Q 042938 13 VVIFSKSECC-ICFSIQ-------TLICGFGANPTVY--ELDQIPNG-PQIERALQQLG 60 (106)
Q Consensus 13 v~vf~~~~Cp-~C~~~~-------~~L~~~~v~~~~v--~vd~~~~~-~~~~~~l~~~~ 60 (106)
++.|+-+.|| .|.... +.|.+.+..+..+ .+|...+. +.++++.+.++
T Consensus 56 lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 56 LVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG 114 (174)
T ss_dssp EEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred EEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 5667888897 676332 3333334455544 45543333 33666666554
No 331
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=62.93 E-value=6.9 Score=27.76 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=15.3
Q ss_pred EEEEEcCCCchHHHHHHH----HhhcC
Q 042938 13 VVIFSKSECCICFSIQTL----ICGFG 35 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~----L~~~~ 35 (106)
|+..+..+||+|...+-. |.+.|
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcC
Confidence 334466889999977644 45555
No 332
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=61.92 E-value=9.6 Score=23.53 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=7.0
Q ss_pred CEEEEEcCC---CchHH
Q 042938 12 PVVIFSKSE---CCICF 25 (106)
Q Consensus 12 ~v~vf~~~~---Cp~C~ 25 (106)
.+++|+..+ |+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 467786644 88994
No 333
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=61.67 E-value=46 Score=22.35 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCCEEEEEcCC---CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938 10 EKPVVIFSKSE---CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 10 ~~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~ 86 (106)
..+|.+..... +.++...++.++++|.+...+.+....+.+++.+.+ ...-.||+.| |....+.+..+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l------~~ad~I~~~G---G~~~~~~~~l~ 99 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL------LEADGIFVGG---GNQLRLLSVLR 99 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH------hhCCEEEEcC---CcHHHHHHHHH
Confidence 34455543332 578899999999999987766543333334444444 3355677777 44444444433
Q ss_pred hC-CchHHHH
Q 042938 87 QN-ELGPLLV 95 (106)
Q Consensus 87 ~g-~L~~~L~ 95 (106)
.- -+..+++
T Consensus 100 ~t~~~~~i~~ 109 (210)
T cd03129 100 ETPLLDAILK 109 (210)
T ss_pred hCChHHHHHH
Confidence 33 4444333
No 334
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=61.64 E-value=7.6 Score=25.29 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHh----hcCCCce
Q 042938 13 VVIFSKSECCICFSIQTLIC----GFGANPT 39 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~----~~~v~~~ 39 (106)
|.+|+-..||||--....|. +++++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 46899999999986655554 4555544
No 335
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=60.40 E-value=20 Score=22.54 Aligned_cols=59 Identities=7% Similarity=-0.083 Sum_probs=34.2
Q ss_pred chHHHHHHHHhhcC---------CCceEEEcccCCC-chHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 22 CICFSIQTLICGFG---------ANPTVYELDQIPN-GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 22 p~C~~~~~~L~~~~---------v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
|.-..++.+|...| ..|...+.+...- ..++.+.+.+...--.-|.|+.+|+.+-|+++
T Consensus 38 ~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 38 WHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred cCHHHHHHHHHHcCHHHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 34455566665543 4454444333221 23455555555444566999999999889874
No 336
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=60.19 E-value=14 Score=22.06 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=17.3
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC
Q 042938 13 VVIFSKSECCICFSIQTLICGFG 35 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~ 35 (106)
+.+|+.+. ++|..++++|++..
T Consensus 23 l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 23 LVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred EEEEeCCC-cchHHHHHHHHHHH
Confidence 45577766 99999999997763
No 337
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=60.16 E-value=18 Score=21.96 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=21.8
Q ss_pred hHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 50 PQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 50 ~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
.++.+.+.+...--.-|.|+.+++.+-||++
T Consensus 78 ~e~~~~l~~~p~LikRPIi~~~~~~~vGf~~ 108 (111)
T cd03036 78 EEALELLSSDGMLIKRPFVVDDDKVLVGFKE 108 (111)
T ss_pred HHHHHHHHhCcCeeeCCEEEeCCEEEEccCh
Confidence 3455555555444567999999998888875
No 338
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=59.92 E-value=24 Score=18.57 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=14.1
Q ss_pred cCCCchHH-HHHHHHhhc-CCC
Q 042938 18 KSECCICF-SIQTLICGF-GAN 37 (106)
Q Consensus 18 ~~~Cp~C~-~~~~~L~~~-~v~ 37 (106)
.-.|+.|. ++.+.|.+. |+.
T Consensus 6 ~m~C~~C~~~v~~~l~~~~GV~ 27 (62)
T PF00403_consen 6 GMTCEGCAKKVEKALSKLPGVK 27 (62)
T ss_dssp STTSHHHHHHHHHHHHTSTTEE
T ss_pred CcccHHHHHHHHHHHhcCCCCc
Confidence 45799995 667788776 553
No 339
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=59.90 E-value=26 Score=22.41 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 25 FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 25 ~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.++.++|++.+++|+.++.+.....++..+.+.. .....+-.+++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~-~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGE-LPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhcc-CCCceEEEEEE
Confidence 3678899999999999887765554444444322 22245555554
No 340
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=59.31 E-value=22 Score=24.93 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHhhhhCCCEEEEEcC-----CCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCC
Q 042938 4 VTRMVNEKPVVIFSKS-----ECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGC 61 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~-----~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~ 61 (106)
++++-..-.|++|..+ .-++=..++.+|+++ ++.++.+|.+..++.. ++....+|-
T Consensus 20 L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~--~~~~~~~Gi 86 (271)
T PF09822_consen 20 LKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA--EEKAKEYGI 86 (271)
T ss_pred HHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH--HHHHHhcCC
Confidence 3444444457778777 466777888999887 5777887775555433 344444443
No 341
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=58.87 E-value=25 Score=26.14 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEE--ECC-eEeecchHHHhH
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVF--IGQ-RLVGGPNQVMSL 84 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~if--v~g-~~iGg~~~~~~~ 84 (106)
..+.++|.+..+.||. .+...-+|+....+.+|.+- +...+++.+.+......+|.++ .-| ..-|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3578899999999986 55556667777777777643 2344666665543334567433 334 456788877654
No 342
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.25 E-value=5 Score=28.98 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=9.6
Q ss_pred EEEEcCCCchHHHH
Q 042938 14 VIFSKSECCICFSI 27 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~ 27 (106)
++=-++.||||++-
T Consensus 266 ivGKkqtCPYCKek 279 (328)
T KOG1734|consen 266 IVGKKQTCPYCKEK 279 (328)
T ss_pred eecCCCCCchHHHH
Confidence 33345889999853
No 343
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=57.86 E-value=46 Score=24.75 Aligned_cols=81 Identities=9% Similarity=-0.012 Sum_probs=51.9
Q ss_pred hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEE----------cccCCCch-HHHHHHHHhCCCCCccEEEE
Q 042938 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYE----------LDQIPNGP-QIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~----------vd~~~~~~-~~~~~l~~~~~~~tvP~ifv 70 (106)
+++.++++..-+.||+-+.|.-...+..+.+.++++|.... |...|... .+.+.+.. -+++++=.|+-
T Consensus 54 ~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~-~~Wr~~~~iYd 132 (372)
T cd06387 54 NAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAH-YKWEKFVYLYD 132 (372)
T ss_pred HHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHh-cCCCEEEEEec
Confidence 35667788888899999999999999999999999885432 22222221 23444433 44577767775
Q ss_pred CCeEeecchHHHh
Q 042938 71 GQRLVGGPNQVMS 83 (106)
Q Consensus 71 ~g~~iGg~~~~~~ 83 (106)
+..-++...++.+
T Consensus 133 ~d~gl~~Lq~L~~ 145 (372)
T cd06387 133 TERGFSILQAIME 145 (372)
T ss_pred CchhHHHHHHHHH
Confidence 5554444444444
No 344
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=57.47 E-value=31 Score=20.95 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=33.6
Q ss_pred chHHHHHHHHhhcC-----------CCceEEEcccC-CCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938 22 CICFSIQTLICGFG-----------ANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 22 p~C~~~~~~L~~~~-----------v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~ 79 (106)
|.-.....+++..| ..|...+++.. -+.+++.+.+.+...--.-|.|+.+++.+-|++
T Consensus 36 ~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~ 105 (112)
T cd03034 36 PTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP 105 (112)
T ss_pred cCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence 34455666666655 33444444432 122335556665554467799999998877774
No 345
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=56.21 E-value=8.1 Score=25.46 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=14.4
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 042938 13 VVIFSKSECCICFSIQTLI 31 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L 31 (106)
|.+|+-.-||||--+..-|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 4689999999998555444
No 346
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=55.66 E-value=60 Score=21.74 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=58.9
Q ss_pred hHHHhhhhCCCEEEEEcC-----CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC-CCCccEEEECCeEe
Q 042938 2 DMVTRMVNEKPVVIFSKS-----ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC-QPTVPAVFIGQRLV 75 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~-----~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g~~i 75 (106)
+..+..-.++.+.+|+.+ ..|.-.+++.+=++.|++.-...+-.....+++.+++...+- ..+--.++||++.
T Consensus 71 e~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRl- 149 (190)
T KOG2961|consen 71 ERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRL- 149 (190)
T ss_pred HHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccch-
Confidence 345556667889999874 367777888888888999877767776666765555432211 2233457888875
Q ss_pred ecchHHHhHHHhCCchHHHH
Q 042938 76 GGPNQVMSLHVQNELGPLLV 95 (106)
Q Consensus 76 Gg~~~~~~~~~~g~L~~~L~ 95 (106)
|.|+.-.+..|.+.-+++
T Consensus 150 --fTDI~~aN~mGs~gVw~~ 167 (190)
T KOG2961|consen 150 --FTDIVYANRMGSLGVWTE 167 (190)
T ss_pred --hhhHhhhhhccceeEEec
Confidence 556666666666655443
No 347
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.60 E-value=10 Score=23.28 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.6
Q ss_pred CCCccEEEECCeEeec
Q 042938 62 QPTVPAVFIGQRLVGG 77 (106)
Q Consensus 62 ~~tvP~ifv~g~~iGg 77 (106)
-...|.+|.||+.||=
T Consensus 79 DECTplvF~n~~LvgW 94 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGW 94 (102)
T ss_pred CceEEEEEECCEEEEE
Confidence 3678999999999983
No 348
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=55.11 E-value=31 Score=21.21 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=33.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchH
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQ 51 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~ 51 (106)
+|++++.|+|.-..-++.+....+.++..+.+....+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 4789999999999999999999988888888877666544
No 349
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=54.84 E-value=28 Score=21.43 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=37.4
Q ss_pred CEEEEEcCCCch----HHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCI----CFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~----C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.++.-..-|. =...++..++.|+.++.+.+..+....++.+.+...+.-++|=.|++
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 344444444454 44556788899999999999888777788888888766566655554
No 350
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=54.81 E-value=52 Score=25.13 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC---------CCCccEEEECCe-----------------Eeec
Q 042938 24 CFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC---------QPTVPAVFIGQR-----------------LVGG 77 (106)
Q Consensus 24 C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~---------~~tvP~ifv~g~-----------------~iGg 77 (106)
+.++..+=..++.+...+--.+....++.+++++++.+ +.++|.+..+|. +-|.
T Consensus 92 ~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~Gh 171 (420)
T PF01704_consen 92 VEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGH 171 (420)
T ss_dssp HHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TG
T ss_pred HHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCC
Confidence 44555555566777666656666666777788887643 256777766662 1133
Q ss_pred chHHHhHHHhCCchHHHHhcCceeec
Q 042938 78 PNQVMSLHVQNELGPLLVRAGAIWLW 103 (106)
Q Consensus 78 ~~~~~~~~~~g~L~~~L~~~g~~~~~ 103 (106)
-+-...+..+|-|++++ +.|..+++
T Consensus 172 Gdi~~aL~~sG~Ld~l~-~~G~eyif 196 (420)
T PF01704_consen 172 GDIYRALYNSGLLDKLL-ARGIEYIF 196 (420)
T ss_dssp GGHHHHHHHTTHHHHHH-HTT--EEE
T ss_pred cceehhhhccChHHHHH-HcCCeEEE
Confidence 34456677888887765 44766653
No 351
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=53.99 E-value=78 Score=23.32 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=39.6
Q ss_pred CCEEEEEcC---CCchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHhCCCCCcc-EEEECCe
Q 042938 11 KPVVIFSKS---ECCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQLGCQPTVP-AVFIGQR 73 (106)
Q Consensus 11 ~~v~vf~~~---~Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~~~~~tvP-~ifv~g~ 73 (106)
.+++|.+.+ ..+...++++.|.+.|+++..++ +..++..+.+.+.+..... ...= .|=|||=
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGGG 91 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRA-GGCDGVIAFGGG 91 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCc
Confidence 455555543 25678899999999999887664 6667777767666655432 2222 3336663
No 352
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=53.45 E-value=30 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCceEEEcccCCCchH
Q 042938 25 FSIQTLICGFGANPTVYELDQIPNGPQ 51 (106)
Q Consensus 25 ~~~~~~L~~~~v~~~~v~vd~~~~~~~ 51 (106)
.++.++|++.+++|+.++.......++
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~ 28 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEE 28 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHH
Confidence 467899999999999988766544443
No 353
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=53.40 E-value=80 Score=23.33 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=40.5
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV 75 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i 75 (106)
.++.|.+.+. -+...+++..|.+.++++..++ +..++....+.+..........=-.|=|||=.+
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~ 95 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSS 95 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4666665554 4567899999999999887654 666777776666665543211112445666433
No 354
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=53.39 E-value=70 Score=21.81 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCC-ceEEEcccCC--CchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGAN-PTVYELDQIP--NGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~-~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
.+|++..... +.+|.+....|.++|.. ...+.++..+ +..++.+.+ .....||++| |....+.+.
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l------~~ad~I~~~G---G~~~~~~~~ 100 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARL------RDADGIFFTG---GDQLRITSA 100 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHH------HhCCEEEEeC---CcHHHHHHH
Confidence 3555554433 78899999999999985 5666665422 223333443 2344666665 222334443
Q ss_pred HHhCCchHHHHh
Q 042938 85 HVQNELGPLLVR 96 (106)
Q Consensus 85 ~~~g~L~~~L~~ 96 (106)
.+...|.+.|++
T Consensus 101 l~~t~l~~~l~~ 112 (217)
T cd03145 101 LGGTPLLDALRK 112 (217)
T ss_pred HcCChHHHHHHH
Confidence 344445454544
No 355
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.51 E-value=47 Score=23.31 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=43.8
Q ss_pred CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938 19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~ 86 (106)
+.-..|-.++.+|.-.+.+|.++--+..+ ++ +....+|-+-+|...+.+|+-+....+
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae-------fm---SP~G~vPllr~g~~~~aef~pIV~fVe 89 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE-------FM---SPGGKVPLLRIGKTLFAEFEPIVDFVE 89 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc-------cc---CCCCCCceeeecchhhhhhhHHHHHHH
Confidence 56778999999999999999876443321 22 222489999999999999998877653
No 356
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=52.42 E-value=19 Score=24.17 Aligned_cols=32 Identities=3% Similarity=0.061 Sum_probs=21.3
Q ss_pred CEEEEEcCCCchHHHHHHHH----hhcCCCc--eEEEc
Q 042938 12 PVVIFSKSECCICFSIQTLI----CGFGANP--TVYEL 43 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~--~~v~v 43 (106)
+|-+|+-.-||||--+++-| ...+++. ..+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 57799999999997655554 4455543 34444
No 357
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=52.25 E-value=13 Score=24.95 Aligned_cols=30 Identities=7% Similarity=-0.100 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCce
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPT 39 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~ 39 (106)
..+|++.+-++|.-+.-.+.+-+.++.+|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 346899999999999999999999999884
No 358
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=52.24 E-value=40 Score=21.25 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=21.1
Q ss_pred CEEEEEcCCCchHH------------HHHHHHhhcCCCceEEEccc
Q 042938 12 PVVIFSKSECCICF------------SIQTLICGFGANPTVYELDQ 45 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~------------~~~~~L~~~~v~~~~v~vd~ 45 (106)
.|++.|......+. ....+|++.+++|..+-+..
T Consensus 42 ~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 42 EIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred EEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 45555555555544 66777777777776654443
No 359
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=51.53 E-value=81 Score=23.44 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=39.9
Q ss_pred CCEEEEEcCC----CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHhCC-CCCccEEEECCeEe
Q 042938 11 KPVVIFSKSE----CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQLGC-QPTVPAVFIGQRLV 75 (106)
Q Consensus 11 ~~v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g~~i 75 (106)
.++.|.+.+. ++...++...|++.++++..++ +..++....+.+....... ...+ .|=+||=.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~-IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQA-VIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCE-EEEeCCccH
Confidence 4566665433 6778999999999999887764 6666776665555544321 1222 344666433
No 360
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=51.39 E-value=32 Score=22.93 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=33.0
Q ss_pred HHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHh-CCCCCccEEEECCe
Q 042938 25 FSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQL-GCQPTVPAVFIGQR 73 (106)
Q Consensus 25 ~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv~g~ 73 (106)
.+.+.+++.+- .-.-.+||...+....+...|++. +..+++|.|.||.+
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK 121 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNK 121 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccC
Confidence 35555555542 224567888777766677777776 55689999999864
No 361
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=50.55 E-value=40 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCceEEEcccCCC
Q 042938 26 SIQTLICGFGANPTVYELDQIPN 48 (106)
Q Consensus 26 ~~~~~L~~~~v~~~~v~vd~~~~ 48 (106)
.+.++|++.+++|+.++-+..+.
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~ 24 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPD 24 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCC
Confidence 47899999999999998876544
No 362
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=50.17 E-value=79 Score=23.08 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.1
Q ss_pred CCEEEEEcCCC--chHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSEC--CICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~C--p~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
.+++|.+.+.. ++..++...|++.++.+...++..++....+.+..+..
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~ 73 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIA 73 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHH
Confidence 45655554332 67778889999999887655677777766666655444
No 363
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=50.04 E-value=88 Score=22.02 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=39.7
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
.+++|+.++|.-..-++.+..+.+.++.............+...+...+ .-..+|+|.
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~vl~iDE 89 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLE---EGDVLFIDE 89 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcc---cCCEEEEeh
Confidence 4899999999999999999999988776655433333334444444332 245778887
No 364
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=49.68 E-value=49 Score=26.68 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=41.1
Q ss_pred EcCCCchHHHHHHHHhhcCCCceEEEccc-CCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938 17 SKSECCICFSIQTLICGFGANPTVYELDQ-IPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV 81 (106)
Q Consensus 17 ~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~-~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~ 81 (106)
..+-|+.|..+.+.|.+.|+..+.+|--- -|-.+++ +.+....-..=.++-+|-..||+-+.
T Consensus 509 ~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~l---l~~La~~h~~~vtlEe~~~~GG~Gs~ 571 (627)
T COG1154 509 FGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEAL---LLELAKSHDLVVTLEENVVDGGFGSA 571 (627)
T ss_pred cchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHH---HHHHHhhcCeEEEEecCcccccHHHH
Confidence 44679999999999999999999887543 2333342 22223222233556777789999653
No 365
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=49.59 E-value=47 Score=18.78 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=19.4
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhcCCC
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGFGAN 37 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~ 37 (106)
...+|++|.. .+..+..+...|...|.+
T Consensus 55 ~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 4556777766 666777777777777764
No 366
>PF15616 TerY-C: TerY-C metal binding domain
Probab=49.25 E-value=5.6 Score=25.48 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=10.0
Q ss_pred EEEcCCCchHHHHH
Q 042938 15 IFSKSECCICFSIQ 28 (106)
Q Consensus 15 vf~~~~Cp~C~~~~ 28 (106)
+...|+||+|-...
T Consensus 74 L~g~PgCP~CGn~~ 87 (131)
T PF15616_consen 74 LIGAPGCPHCGNQY 87 (131)
T ss_pred hcCCCCCCCCcChh
Confidence 34569999996553
No 367
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.23 E-value=91 Score=23.11 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=33.7
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+. .++..++...|.+.++.+..++ +..++....+.+.+...
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~ 81 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELY 81 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4566665544 3567889999999999887764 66667666666665444
No 368
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=48.74 E-value=1e+02 Score=22.60 Aligned_cols=49 Identities=8% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.+.+.+. .++..++...|.+.++.+..++ +..++..+.+.+.....
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 76 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAY 76 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHH
Confidence 3555554432 5788899999999999887664 77777777766666554
No 369
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=48.37 E-value=99 Score=22.89 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=35.6
Q ss_pred CCEEEEEcC----CCchHHHHHHHHhhcCCCceEE-EcccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKS----ECCICFSIQTLICGFGANPTVY-ELDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~----~Cp~C~~~~~~L~~~~v~~~~v-~vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+ ..+...+++..|++.++++..+ ++..++..+.+.+.....
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~ 79 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALA 79 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 466666643 4678899999999999998766 477777777666655443
No 370
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.36 E-value=80 Score=23.28 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=41.6
Q ss_pred CEEEEEcCC-----CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC-eEeecchHHHhHH
Q 042938 12 PVVIFSKSE-----CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ-RLVGGPNQVMSLH 85 (106)
Q Consensus 12 ~v~vf~~~~-----Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g-~~iGg~~~~~~~~ 85 (106)
.+.+|+.++ ||.|..+.-++.-.+.+. .+++..++.. +.....|.+..+. ..|+|++++....
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~~~l-~v~~ssN~~~----------s~sg~LP~l~~~ng~~va~~~~iv~~L 71 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAGAPL-KVVVSSNPWR----------SPSGKLPYLITDNGTKVAGPVKIVQFL 71 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhCCCc-eeEeecCCCC----------CCCCCCCeEEecCCceeccHHHHHHHH
Confidence 355666644 999999988776666333 3344444432 3335699987654 9999999876654
Q ss_pred H
Q 042938 86 V 86 (106)
Q Consensus 86 ~ 86 (106)
+
T Consensus 72 ~ 72 (313)
T KOG3028|consen 72 K 72 (313)
T ss_pred H
Confidence 3
No 371
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=48.33 E-value=30 Score=24.57 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=51.1
Q ss_pred hhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEE--------EcccCCCchHHHHHHHHhCCCCCccE-----EEECCeE
Q 042938 8 VNEKPVVIFSKSECCICFSIQTLICGFGANPTVY--------ELDQIPNGPQIERALQQLGCQPTVPA-----VFIGQRL 74 (106)
Q Consensus 8 ~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v--------~vd~~~~~~~~~~~l~~~~~~~tvP~-----ifv~g~~ 74 (106)
+..+++.+|+.-.=..-..+...|++.|++|+.. -|+.. +..+.+..|...|- ++-.. +|-.+.+
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~-~~~~Ar~~La~~GL-P~~g~~~~~~lFd~~~l 93 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQS-QFINAVELLRLNGY-PHRQFTTADKMFPANQL 93 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHH-HHHHHHHHHHHcCC-CCCCCccHHHhCCcccc
Confidence 4456677777766667788999999999999652 22221 11224445555442 21111 4443444
Q ss_pred eecchHHHh---HHHhCCchHHHHhcC
Q 042938 75 VGGPNQVMS---LHVQNELGPLLVRAG 98 (106)
Q Consensus 75 iGg~~~~~~---~~~~g~L~~~L~~~g 98 (106)
+-+..+... ...+|+|.+.|....
T Consensus 94 ~~t~te~~qki~y~regELarTI~~id 120 (249)
T PRK15348 94 VVSPQEEQQKINFLKEQRIEGMLSQME 120 (249)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHhCC
Confidence 333333322 446899999987643
No 372
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=48.28 E-value=37 Score=20.85 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=32.7
Q ss_pred hHHHHHHHHhhcC---------CCceEEEcccCC-CchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 23 ICFSIQTLICGFG---------ANPTVYELDQIP-NGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 23 ~C~~~~~~L~~~~---------v~~~~v~vd~~~-~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
.=..++.+|...| ..|...+.+... +.+++.+.+.+...--.-|.|.-+|+.+-|+++
T Consensus 38 s~~eL~~~l~~~g~~~l~n~~~~~~r~~~~~~~~ls~~e~~~ll~~~P~LikRPIv~~~~~~~vG~~~ 105 (113)
T cd03033 38 TAETLRPFFGDLPVAEWFNPAAPRVKSGEVVPEALDEEEALALMIADPLLIRRPLMQVGDRRMVGFDT 105 (113)
T ss_pred CHHHHHHHHHHcCHHHHHhcccHHHHhcCCCccCCCHHHHHHHHHhCcceeeCCeEEECCEEEecCCH
Confidence 3345555555554 334443333221 223455566555444567999989988888864
No 373
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=47.62 E-value=1.1e+02 Score=22.55 Aligned_cols=82 Identities=7% Similarity=-0.015 Sum_probs=51.8
Q ss_pred hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEc----------ccCCCc-hHHHHHHHHhCCCCCccEEEE
Q 042938 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYEL----------DQIPNG-PQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~v----------d~~~~~-~~~~~~l~~~~~~~tvP~ifv 70 (106)
+++.++++..=+.||+-..+..+..+..+.++.++++-.... ...|.. ..+.+.+.. -++.++=.++.
T Consensus 54 ~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~-~~wk~vaiiYd 132 (371)
T cd06388 54 NAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDH-YEWNRFVFLYD 132 (371)
T ss_pred HHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHh-cCceEEEEEec
Confidence 346677888888999999999999999999999998753221 111221 113333333 34577766776
Q ss_pred CCeEeecchHHHhH
Q 042938 71 GQRLVGGPNQVMSL 84 (106)
Q Consensus 71 ~g~~iGg~~~~~~~ 84 (106)
.+.-.+..+.+.+.
T Consensus 133 ~~~~~~~lq~l~~~ 146 (371)
T cd06388 133 TDRGYSILQAIMEK 146 (371)
T ss_pred CCccHHHHHHHHHh
Confidence 56545555555443
No 374
>PLN02590 probable tyrosine decarboxylase
Probab=47.36 E-value=81 Score=24.92 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=44.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCC---CceEEEcccC----CCchHHHHHHHHhCCCCCccEEEE---CCeEeecchH
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGA---NPTVYELDQI----PNGPQIERALQQLGCQPTVPAVFI---GQRLVGGPNQ 80 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v---~~~~v~vd~~----~~~~~~~~~l~~~~~~~tvP~ifv---~g~~iGg~~~ 80 (106)
.++++|.+..+.+|. .+.+.-+|+ ....+.+|.. -+...+++.+.+-......|.+++ |-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 468999999999984 333444444 3566667642 234456666654322235676554 3356788888
Q ss_pred HHhHH
Q 042938 81 VMSLH 85 (106)
Q Consensus 81 ~~~~~ 85 (106)
+.++.
T Consensus 306 l~~Ia 310 (539)
T PLN02590 306 LVPLG 310 (539)
T ss_pred HHHHH
Confidence 86653
No 375
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=46.90 E-value=85 Score=23.23 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCEEEEEcCCC---chHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSEC---CICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~C---p~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+.. +...++...|.+.++++..++ +..++..+.+.+.....
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~ 81 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF 81 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 45666655554 667889999999999887764 66677766666655444
No 376
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=46.61 E-value=50 Score=19.54 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcC-----------CCceEEEcc--cCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938 24 CFSIQTLICGFG-----------ANPTVYELD--QIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP 78 (106)
Q Consensus 24 C~~~~~~L~~~~-----------v~~~~v~vd--~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~ 78 (106)
-..++.++...+ ..|.....+ ..-+.+++.+.+.+...--.-|.|+-+++.+-|+
T Consensus 38 ~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikRPii~~~~~~~iG~ 105 (105)
T cd02977 38 KEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKRPIVVDGDRLLVGF 105 (105)
T ss_pred HHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeCCEEEECCEEEecC
Confidence 345566665555 444444333 1222344556666655546779999988876654
No 377
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.13 E-value=1.1e+02 Score=22.66 Aligned_cols=49 Identities=12% Similarity=0.337 Sum_probs=33.7
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+. .++..+++..|++.|+++..++ +..++..+.+.+.....
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 83 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVF 83 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHH
Confidence 4566655443 4678899999999999887774 66677666665554443
No 378
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=45.85 E-value=60 Score=20.12 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCchHHHHHHHH---hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938 11 KPVVIFSKSECCICFSIQTLI---CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L---~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g 72 (106)
..|.+|..+.|..-..+++++ ++-|++|..+.+....+...+.-.....++ ..| .|=++.
T Consensus 3 Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~lA~~AA~~S~-lgV-GIGi~~ 65 (112)
T PF02288_consen 3 PAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAFLAYQAARLSR-LGV-GIGIQS 65 (112)
T ss_dssp TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHHHHHHHHHHST-TSE-EEEE-T
T ss_pred CEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHHHHHHHhhccC-cce-eEEEcC
Confidence 457788888888766666666 778999999777766665553333333343 334 444443
No 379
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=45.48 E-value=70 Score=20.76 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=24.9
Q ss_pred hHHHhhhhCCCEEEEEcCCCch--HHHHHHHHhhcC
Q 042938 2 DMVTRMVNEKPVVIFSKSECCI--CFSIQTLICGFG 35 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~~Cp~--C~~~~~~L~~~~ 35 (106)
+.+.+.+.....+||.+|.--+ .-.+|.+|+...
T Consensus 57 ~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~ 92 (171)
T TIGR03567 57 KAATAQVAQADGVVVATPVYKASYSGVLKALLDLLP 92 (171)
T ss_pred HHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCC
Confidence 4566777888999999987544 457788887664
No 380
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=19 Score=25.06 Aligned_cols=16 Identities=13% Similarity=0.461 Sum_probs=14.2
Q ss_pred CEEEEEcCCCchHHHH
Q 042938 12 PVVIFSKSECCICFSI 27 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~ 27 (106)
.|++|+-+-||+|.+.
T Consensus 42 ~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 42 NITLYYEALCPDCSKF 57 (220)
T ss_pred EEEEEEEecCccHHHH
Confidence 5899999999999865
No 381
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=45.40 E-value=49 Score=24.72 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCchHHHHHHHHhhcCC----CceEEEcccCCCchHHHHHHHHhC--CCCCccEEEECCeEe-ecc
Q 042938 20 ECCICFSIQTLICGFGA----NPTVYELDQIPNGPQIERALQQLG--CQPTVPAVFIGQRLV-GGP 78 (106)
Q Consensus 20 ~Cp~C~~~~~~L~~~~v----~~~~v~vd~~~~~~~~~~~l~~~~--~~~tvP~ifv~g~~i-Gg~ 78 (106)
-|.+|..-..-+.+..+ +|...|+-... ...+.++++... .+..+ .||+||..| ||.
T Consensus 156 ~cr~cm~QvlK~~~~~~sqisey~PLDLfSG~-k~rm~~AikaL~~~pqnnl-rvF~nG~lv~gg~ 219 (375)
T KOG4749|consen 156 ICRFCMHQVLKLRENHISQISEYDPLDLFSGS-KERMHKAIKALYSTPQNNL-RVFLNGSLVFGGL 219 (375)
T ss_pred hhHHHHHHHHHHhhcchhhhhccCchhhcccc-HHHHHHHHHHHhhccccce-eEEeccceeeccc
Confidence 47777544433334443 24444444332 234777777652 23333 599999876 443
No 382
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=44.84 E-value=26 Score=22.51 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=39.8
Q ss_pred HHhhhh--CCCEE--EEEcCCCchHHHHHHHHhhcC-----C-CceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938 4 VTRMVN--EKPVV--IFSKSECCICFSIQTLICGFG-----A-NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR 73 (106)
Q Consensus 4 ~~~~~~--~~~v~--vf~~~~Cp~C~~~~~~L~~~~-----v-~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~ 73 (106)
|.++|. ..+++ =|+.++-|.|.+.-++|.+.. . ..-.+|+++-|+..++.+. +. +..=.+|.+++
T Consensus 11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel----~d-P~tvmFF~rnk 85 (133)
T PF02966_consen 11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYEL----YD-PCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-----S-SEEEEEEETTE
T ss_pred HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhccccc----CC-CeEEEEEecCe
Confidence 444443 34553 399999999999998886653 1 2346788877776553321 21 22223466888
Q ss_pred Ee
Q 042938 74 LV 75 (106)
Q Consensus 74 ~i 75 (106)
++
T Consensus 86 hm 87 (133)
T PF02966_consen 86 HM 87 (133)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 383
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=44.40 E-value=1.3e+02 Score=22.48 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.+++|.+.+. .+...+++..|++.++.+..++ +..+|....+.+.....
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~ 84 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLL 84 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH
Confidence 4565555443 5677899999999999876664 66677777666665444
No 384
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=44.33 E-value=1.2e+02 Score=22.73 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC--eEeecchHHHhHHH----------hC-Cch
Q 042938 25 FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ--RLVGGPNQVMSLHV----------QN-ELG 91 (106)
Q Consensus 25 ~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g--~~iGg~~~~~~~~~----------~g-~L~ 91 (106)
..++.+|.++++.--.+-|..+-..+++.+++.. ....+|.+++=. ..+| .+++..+.+ .| .|+
T Consensus 202 ~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~--nrvY~p~l~v~NKiD~~~-~e~~~~l~~~~~~v~isa~~~~nld 278 (365)
T COG1163 202 DTVRAILREYRIHNADVLIREDVTLDDLIDALEG--NRVYKPALYVVNKIDLPG-LEELERLARKPNSVPISAKKGINLD 278 (365)
T ss_pred HHHHHHHHHhCcccceEEEecCCcHHHHHHHHhh--cceeeeeEEEEecccccC-HHHHHHHHhccceEEEecccCCCHH
Confidence 6889999999998777777777666777777643 235789886533 2344 555544431 12 333
Q ss_pred ----HHHHhcCceeecccC
Q 042938 92 ----PLLVRAGAIWLWKKK 106 (106)
Q Consensus 92 ----~~L~~~g~~~~~~~~ 106 (106)
.+.+.+|..++|-|+
T Consensus 279 ~L~e~i~~~L~liRVYtK~ 297 (365)
T COG1163 279 ELKERIWDVLGLIRVYTKP 297 (365)
T ss_pred HHHHHHHHhhCeEEEEecC
Confidence 344668888888764
No 385
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=44.19 E-value=1.1e+02 Score=21.55 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=39.9
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL 74 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~ 74 (106)
.+.+|+-|+|.-..-+.-+-.+++.++....-...+...++...+.... .-..+|||.-|
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~---~~~ILFIDEIH 111 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLK---EGDILFIDEIH 111 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT-----TT-EEEECTCC
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcC---CCcEEEEechh
Confidence 3788999999999999999999999998765544444555555555433 23479999854
No 386
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=44.15 E-value=51 Score=19.59 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=29.8
Q ss_pred hHHHhhhhCCC-EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938 2 DMVTRMVNEKP-VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL 59 (106)
Q Consensus 2 ~~~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~ 59 (106)
+.++.+-+.++ +.+.|.+....-....+.|..+|++...-+|- .......+++++.
T Consensus 21 e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~--ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 21 EALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEII--TSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEE--EHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEE--ChHHHHHHHHHhc
Confidence 34555555544 55555555555577778889999885432111 1222355677664
No 387
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=43.82 E-value=1.2e+02 Score=21.58 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchH-H----HHHHHHhhcCC-CceEEEcccCCCchHHHHHHHHhCC--CCCccEEEECCeEe
Q 042938 10 EKPVVIFSKSECCIC-F----SIQTLICGFGA-NPTVYELDQIPNGPQIERALQQLGC--QPTVPAVFIGQRLV 75 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C-~----~~~~~L~~~~v-~~~~v~vd~~~~~~~~~~~l~~~~~--~~tvP~ifv~g~~i 75 (106)
...++||.-.+-.+- . ..-.+|.+.|. +.....+...|....+.+.+.+.+- ..-.|-.++.|++.
T Consensus 136 k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha 209 (265)
T COG4822 136 KDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHA 209 (265)
T ss_pred cCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhh
Confidence 455777766543322 1 23456677887 4566788889998888888888743 35679999999764
No 388
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=43.64 E-value=71 Score=23.83 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=16.2
Q ss_pred EEEEEcCCCchH----HHHHHHHhhcCCCceEEEccc
Q 042938 13 VVIFSKSECCIC----FSIQTLICGFGANPTVYELDQ 45 (106)
Q Consensus 13 v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~ 45 (106)
|+.+....|..- ..+++.|++.|+++-.+|++.
T Consensus 325 VI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 325 VIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred EEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 444444445432 234455555566655555554
No 389
>PRK04195 replication factor C large subunit; Provisional
Probab=43.41 E-value=1.5e+02 Score=22.78 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEccc
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQ 45 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~ 45 (106)
...+.+|+.|+|.-...++.+..+++.++.+++...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 356889999999999999999999987766655443
No 390
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=43.34 E-value=8 Score=19.93 Aligned_cols=6 Identities=33% Similarity=0.971 Sum_probs=4.1
Q ss_pred CchHHH
Q 042938 21 CCICFS 26 (106)
Q Consensus 21 Cp~C~~ 26 (106)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 788753
No 391
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.88 E-value=26 Score=20.22 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=18.5
Q ss_pred CCCchHHHHHHHHhhcCCCceE
Q 042938 19 SECCICFSIQTLICGFGANPTV 40 (106)
Q Consensus 19 ~~Cp~C~~~~~~L~~~~v~~~~ 40 (106)
+.=.+|+++.++|+++|++|+-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh 34 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEH 34 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEee
Confidence 3457899999999999999864
No 392
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=42.88 E-value=56 Score=20.21 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCce-EEEcccCCCchHHHHHHHHh-CCCCCccEEEECCe
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPT-VYELDQIPNGPQIERALQQL-GCQPTVPAVFIGQR 73 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~-~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv~g~ 73 (106)
..+|++.-+-.|++..+++. .++.|...- .+|.+..+.... ..+.... ....++|.++|..+
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~~~-~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDEYY-VEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccccc-eEecCCCCCCCceEEEEEecHH
Confidence 35688888888999999877 566676543 344333221110 0000000 12247899998764
No 393
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=42.56 E-value=27 Score=26.94 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC
Q 042938 13 VVIFSKSECCICFSIQTLICGFG 35 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~ 35 (106)
+.+|.. .|++|..++++|++..
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 23 LVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred EEEEeC-CCchHHHHHHHHHHHH
Confidence 455655 7999999999998863
No 394
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=42.39 E-value=55 Score=20.81 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCceEEEcccCCC
Q 042938 26 SIQTLICGFGANPTVYELDQIPN 48 (106)
Q Consensus 26 ~~~~~L~~~~v~~~~v~vd~~~~ 48 (106)
.+.++|++.+++|+.++-+..+.
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~ 25 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDED 25 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCC
Confidence 46789999999999998876554
No 395
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=42.14 E-value=54 Score=18.38 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=16.3
Q ss_pred CCCCCccEEEECCeEeecch
Q 042938 60 GCQPTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 60 ~~~~tvP~ifv~g~~iGg~~ 79 (106)
+....-|.+.|||++++..+
T Consensus 42 G~C~~gP~v~V~~~~~~~~t 61 (72)
T cd03082 42 GRCERAPAALVGQRPVDGAT 61 (72)
T ss_pred CccCCCCeEEECCEEeCCcC
Confidence 44678999999999988764
No 396
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=41.81 E-value=66 Score=19.73 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=25.3
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcc
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELD 44 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd 44 (106)
...+|++|...+...+.++..+|..+|.+ ...++
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 45678999876677788888899888874 44444
No 397
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=41.45 E-value=75 Score=18.77 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=18.2
Q ss_pred hCCCEEEEEcC-CCchHHHHHHHHhhcCCC
Q 042938 9 NEKPVVIFSKS-ECCICFSIQTLICGFGAN 37 (106)
Q Consensus 9 ~~~~v~vf~~~-~Cp~C~~~~~~L~~~~v~ 37 (106)
...+|++|... .|.....+...|.+.|.+
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 34567777654 355666666777777764
No 398
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=41.21 E-value=91 Score=21.41 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhcCCCceEEEcccCCC--chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHh
Q 042938 23 ICFSIQTLICGFGANPTVYELDQIPN--GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQ 87 (106)
Q Consensus 23 ~C~~~~~~L~~~~v~~~~v~vd~~~~--~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~ 87 (106)
....+...+..+++.+-..||+.+-. +..+ +.+++......+|.+.-|| ++..+++.++.+.
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~-eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~ 205 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNL-ELLTKTLELSEHPVMLGGG--ISGVEDLELLKEM 205 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCCH-HHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHC
Confidence 34456667777777555567766422 1111 2333333335689887777 5777777665543
No 399
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=41.14 E-value=62 Score=22.23 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938 23 ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR 73 (106)
Q Consensus 23 ~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~ 73 (106)
....++.+|.++++.--.+.+..+...+++.+++. +....+|.+++..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~--~~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE--GNRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh--CCceEeeEEEEEEC
Confidence 45789999999999877777777777777777763 33456788877654
No 400
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=41.06 E-value=65 Score=17.88 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=13.5
Q ss_pred CCCchHH-HHHHHHhhcC
Q 042938 19 SECCICF-SIQTLICGFG 35 (106)
Q Consensus 19 ~~Cp~C~-~~~~~L~~~~ 35 (106)
-.|.+|. .+++.|.+.+
T Consensus 11 MtC~~C~~~V~~al~~v~ 28 (71)
T COG2608 11 MTCGHCVKTVEKALEEVD 28 (71)
T ss_pred cCcHHHHHHHHHHHhcCC
Confidence 4699995 6688888875
No 401
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=41.05 E-value=1.1e+02 Score=20.37 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=30.4
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCC------------ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGAN------------PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL 74 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~------------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~ 74 (106)
++.+-|+++-| ..|+++|+.+++. |...+|-.......+++..+ .++.+.-=.+|.|++.
T Consensus 63 ~lavASRt~~P--~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~-~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 63 KLAVASRTDEP--DWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHR-KTGIPYEEMLFFDDES 134 (169)
T ss_dssp -EEEEE--S-H--HHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHH-HH---GGGEEEEES-H
T ss_pred EEEEEECCCCh--HHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHH-hcCCChhHEEEecCch
Confidence 34444444455 8899999998877 34455555543344544433 3443444478888863
No 402
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=40.69 E-value=24 Score=24.21 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=28.7
Q ss_pred EEEECCeEeecchHHHhHHHhCCchHHHHhcCc-eeec
Q 042938 67 AVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA-IWLW 103 (106)
Q Consensus 67 ~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~~g~-~~~~ 103 (106)
.+++|+-.+|+.+.-.......++.+.|+++|. ++.|
T Consensus 138 ~~YvDDili~~~s~~e~~~~~~~v~~~L~~~Gf~l~kw 175 (213)
T cd01644 138 NFYVDDILVSTDTLNEAVNVAKRLIALLKKGGFNLRKW 175 (213)
T ss_pred eeecccceecCCCHHHHHHHHHHHHHHHHhCCccchhc
Confidence 478999999988766666666788888998887 5555
No 403
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=40.37 E-value=1.5e+02 Score=22.25 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.+++|++.+. .+...++...|++.|+++..++ +..+|..+.+.+.+...
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~ 102 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL 102 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 4566665543 5678899999999999987774 66677766666665444
No 404
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=39.93 E-value=20 Score=19.68 Aligned_cols=13 Identities=23% Similarity=0.398 Sum_probs=9.7
Q ss_pred CCCchHHHHHHHH
Q 042938 19 SECCICFSIQTLI 31 (106)
Q Consensus 19 ~~Cp~C~~~~~~L 31 (106)
|-||.|+++-+-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 5599999886544
No 405
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=39.87 E-value=1.1e+02 Score=22.47 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=42.0
Q ss_pred CEEEE-EcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchH-HHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 12 PVVIF-SKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQ-IERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 12 ~v~vf-~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~-~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.++|. +.+....|.++.+.|.+.|++.+.+|+... |-..+ +.+.+++.+ .+ .++-++...||+-+...
T Consensus 203 ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~---~v-v~vEE~~~~gGlG~~va 273 (327)
T CHL00144 203 DITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTH---KV-LIVEECMKTGGIGAELI 273 (327)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhC---cE-EEEECCCCCCCHHHHHH
Confidence 44443 335577889999999999999999998764 33232 434332221 22 34455666788865433
No 406
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=39.07 E-value=1.6e+02 Score=21.71 Aligned_cols=49 Identities=14% Similarity=0.333 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEE-EcccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVY-ELDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v-~vd~~~~~~~~~~~l~~~ 59 (106)
.+++|.+.+....-..++..|.+.++.+..+ ++..++....+.+.....
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 73 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLL 73 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHH
Confidence 4677776665555567888899888877665 466677766655555443
No 407
>PRK08118 topology modulation protein; Reviewed
Probab=39.02 E-value=52 Score=21.39 Aligned_cols=32 Identities=6% Similarity=0.001 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEE
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYE 42 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~ 42 (106)
.+|+|++.+++.-..-++.+-+.+++++...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 57999999999999999999999998865554
No 408
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=38.47 E-value=93 Score=18.98 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHhhcCCCce
Q 042938 10 EKPVVIFSKSECCICFSIQTLICGFGANPT 39 (106)
Q Consensus 10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~ 39 (106)
..+|++..+..|++..+++. ..+.|...-
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~av 71 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVAV 71 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEE
Confidence 56799999999999888775 555666543
No 409
>PLN02880 tyrosine decarboxylase
Probab=38.45 E-value=1e+02 Score=23.86 Aligned_cols=71 Identities=8% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCchHH-HHHHHHhhcCCC---ceEEEcccC----CCchHHHHHHHHhCCCCCccEEEEC---CeEeecch
Q 042938 11 KPVVIFSKSECCICF-SIQTLICGFGAN---PTVYELDQI----PNGPQIERALQQLGCQPTVPAVFIG---QRLVGGPN 79 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~-~~~~~L~~~~v~---~~~v~vd~~----~~~~~~~~~l~~~~~~~tvP~ifv~---g~~iGg~~ 79 (106)
.++++|.+..+.+|. ++..+ +|+. ...+.+|.. -+...+++.+.+-......|.+++. -...|.+|
T Consensus 180 ~~~vv~~S~~aH~Sv~Kaa~~---lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 180 EKLVVYASDQTHSALQKACQI---AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred CCeEEEEcCCchHHHHHHHHH---cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 468999998888885 34443 3443 455666532 2344566666544222456776543 34678888
Q ss_pred HHHhH
Q 042938 80 QVMSL 84 (106)
Q Consensus 80 ~~~~~ 84 (106)
++.++
T Consensus 257 pl~eI 261 (490)
T PLN02880 257 PLLEL 261 (490)
T ss_pred cHHHH
Confidence 87664
No 410
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=38.45 E-value=1.3e+02 Score=22.03 Aligned_cols=81 Identities=7% Similarity=0.013 Sum_probs=49.8
Q ss_pred hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEc----------ccCCCc-hHHHHHHHHhCCCCCccEEEE
Q 042938 2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYEL----------DQIPNG-PQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~v----------d~~~~~-~~~~~~l~~~~~~~tvP~ifv 70 (106)
+++.++++..=+.||+-..+..+..+..+.+++++++-.... ...|.. ..+.+.+..+ ++.++=.++.
T Consensus 48 ~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~-~wk~vailYd 126 (370)
T cd06389 48 NAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYY-QWDKFAYLYD 126 (370)
T ss_pred HHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhc-CCcEEEEEec
Confidence 356677888888999999999999999999999998754321 111221 2233444333 4577866665
Q ss_pred CCeEeecchHHHh
Q 042938 71 GQRLVGGPNQVMS 83 (106)
Q Consensus 71 ~g~~iGg~~~~~~ 83 (106)
+..-.+...++.+
T Consensus 127 sd~gl~~lq~l~~ 139 (370)
T cd06389 127 SDRGLSTLQAVLD 139 (370)
T ss_pred CchHHHHHHHHHH
Confidence 4433334444433
No 411
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=38.18 E-value=26 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEECCeEeecchHHHhHHHhCCchHHHHhcCceeecc
Q 042938 68 VFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWK 104 (106)
Q Consensus 68 ifv~g~~iGg~~~~~~~~~~g~L~~~L~~~g~~~~~~ 104 (106)
+.||+-.+.|. .++++.++|+++||..++.
T Consensus 360 vlVDDSIVRGt-------Ts~~IVkmlreaGAkeVh~ 389 (474)
T KOG0572|consen 360 VLVDDSIVRGT-------TSSPIVKMLREAGAKEVHI 389 (474)
T ss_pred EEEecceeccC-------chHHHHHHHHHcCCcEEEE
Confidence 44555445454 4678899999999988764
No 412
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=37.99 E-value=28 Score=21.19 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=13.1
Q ss_pred CCccEEEECCeEeecch
Q 042938 63 PTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 63 ~tvP~ifv~g~~iGg~~ 79 (106)
...=++||||.++|.+-
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 34458999999999764
No 413
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.86 E-value=85 Score=18.35 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=26.2
Q ss_pred HHhhhhCCCEEEEEcCCCchH--HHHHHHHhhcCCCceEE
Q 042938 4 VTRMVNEKPVVIFSKSECCIC--FSIQTLICGFGANPTVY 41 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C--~~~~~~L~~~~v~~~~v 41 (106)
+.+.+....++|+..+.+.+. ..+++...+.++++...
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 556667777777777776653 57777777777776654
No 414
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=37.76 E-value=98 Score=23.00 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=42.6
Q ss_pred CEEEEE-cCCCchHHHHHHHHhhcCCCceEEEcccC-CCchH-HHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 12 PVVIFS-KSECCICFSIQTLICGFGANPTVYELDQI-PNGPQ-IERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 12 ~v~vf~-~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~-~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.++|.+ .+....|.++.+.|.+.|++.+.+|+... |-..+ +.+.+++ + ..+ .++-++...||+-+...
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~-t--~~v-vtvEE~~~~GGlGs~Va 300 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRK-T--NRL-VTVEEGWPQHGVGAEIC 300 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhh-c--CeE-EEEeCCCcCCCHHHHHH
Confidence 455544 35577888999999999999999998764 22222 3333322 2 223 44556667899865433
No 415
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=37.73 E-value=36 Score=26.31 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=17.2
Q ss_pred EEEEEcCCCchHHHHHHHHhhcC
Q 042938 13 VVIFSKSECCICFSIQTLICGFG 35 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L~~~~ 35 (106)
+.+|+. .|++|..++++|++..
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 23 LVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred EEEEeC-CCchhHHHHHHHHHHH
Confidence 444655 7999999999998763
No 416
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=36.93 E-value=83 Score=19.15 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHhhhhCCCEEEEEcCCCchHH----HHHHHHhhcCCCceEEEcc
Q 042938 4 VTRMVNEKPVVIFSKSECCICF----SIQTLICGFGANPTVYELD 44 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp~C~----~~~~~L~~~~v~~~~v~vd 44 (106)
++++....+|++.. ..++++. .+..+|...+.+...+++.
T Consensus 80 l~~l~~~~~I~iW~-~~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 80 LEELPEDDPIVIWY-GDNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHhCCCCCEEEEEe-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45555555555544 4466664 4445556556566666554
No 417
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.90 E-value=1.6e+02 Score=21.32 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=41.9
Q ss_pred CEEEEEcCCCchH----HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC
Q 042938 12 PVVIFSKSECCIC----FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG 71 (106)
Q Consensus 12 ~v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~ 71 (106)
++.+.....-|.+ +...+..++.|+.++.++++.+...+++.+.+.+.+..+.+=.|++-
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq 96 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQ 96 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEc
Confidence 4555555555544 45567778899999999999887777777888888765555455443
No 418
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=36.89 E-value=22 Score=19.82 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=17.9
Q ss_pred CCCCccEEEECCeEeecchHHHh-HHHhCCchHHHHhc
Q 042938 61 CQPTVPAVFIGQRLVGGPNQVMS-LHVQNELGPLLVRA 97 (106)
Q Consensus 61 ~~~tvP~ifv~g~~iGg~~~~~~-~~~~g~L~~~L~~~ 97 (106)
|....|.| |||.|-+.. .-+.-+|+++|+++
T Consensus 14 Ga~~lP~I------IGGSDLi~h~~~knseleeWl~~e 45 (65)
T PF08599_consen 14 GAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQE 45 (65)
T ss_pred CCCCCCee------ecchhhhhccccccccHHHHHHHH
Confidence 33556654 566664432 23455788888753
No 419
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=36.83 E-value=1.6e+02 Score=21.91 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=33.4
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+. .++..+++..|++.++++..++ +..++..+.+.+.....
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~ 82 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAF 82 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 4566665544 3467889999999999887764 66667666666655444
No 420
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.74 E-value=1.6e+02 Score=21.30 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=41.0
Q ss_pred CEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-..-| |=+...+..++.|+.++.++++.+....++.+.+.+.+....+=.|++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 96 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILV 96 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEE
Confidence 34444444444 444566788999999999999988777778888888876555544444
No 421
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=36.72 E-value=66 Score=24.58 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.6
Q ss_pred ccEEEECCe
Q 042938 65 VPAVFIGQR 73 (106)
Q Consensus 65 vP~ifv~g~ 73 (106)
+|.+.++|.
T Consensus 392 IP~L~ietD 400 (430)
T TIGR03191 392 IPIMTFEGN 400 (430)
T ss_pred CCEEEEECC
Confidence 555555444
No 422
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=36.63 E-value=35 Score=17.14 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=17.8
Q ss_pred EEECCeEeecc--hHHHhHHHhCCch
Q 042938 68 VFIGQRLVGGP--NQVMSLHVQNELG 91 (106)
Q Consensus 68 ifv~g~~iGg~--~~~~~~~~~g~L~ 91 (106)
+..||+..|-+ +++.++..+|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 34578888866 5788888888874
No 423
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=36.62 E-value=78 Score=19.31 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=22.3
Q ss_pred CCCceEEEcccCCCchH-HHHHHHHhCCCCCccE
Q 042938 35 GANPTVYELDQIPNGPQ-IERALQQLGCQPTVPA 67 (106)
Q Consensus 35 ~v~~~~v~vd~~~~~~~-~~~~l~~~~~~~tvP~ 67 (106)
+++|..+-++..+...+ ++++|.+++-...-|.
T Consensus 14 ~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~ 47 (100)
T cd01781 14 TRPYKTILLSINDNADRIVGEALEKYGLEKSDPD 47 (100)
T ss_pred CCCeEEEEecCCccHHHHHHHHHHHhCCCccCcc
Confidence 56777777777666555 7788888776554443
No 424
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=36.60 E-value=1.7e+02 Score=21.61 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCEEEEEcCCC---chHHHHHHHHhhcCCCceEE-EcccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSEC---CICFSIQTLICGFGANPTVY-ELDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~C---p~C~~~~~~L~~~~v~~~~v-~vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+.. +...++...|.+.|+++..+ ++..++....+.+.....
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 79 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALY 79 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHH
Confidence 46777665543 35678888999999988766 466677766666655544
No 425
>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]
Probab=36.00 E-value=10 Score=22.79 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=7.1
Q ss_pred cCCCchHHH
Q 042938 18 KSECCICFS 26 (106)
Q Consensus 18 ~~~Cp~C~~ 26 (106)
+++||+|.+
T Consensus 8 ~tyCp~Ckk 16 (94)
T COG1631 8 RTYCPYCKK 16 (94)
T ss_pred eecCccccc
Confidence 478999974
No 426
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=35.51 E-value=35 Score=25.95 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=16.6
Q ss_pred hHHHHHHHHhCCC--CCccEEEECCeE
Q 042938 50 PQIERALQQLGCQ--PTVPAVFIGQRL 74 (106)
Q Consensus 50 ~~~~~~l~~~~~~--~tvP~ifv~g~~ 74 (106)
.++..+..-++|. .-||+|||||.+
T Consensus 59 ~~m~~F~~YYsge~~APVlTIFIGGNH 85 (456)
T KOG2863|consen 59 RRMGDFYKYYSGEIKAPVLTIFIGGNH 85 (456)
T ss_pred HHHHHHHHHhCCcccCceeEEEecCch
Confidence 4466666666653 467888998864
No 427
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.36 E-value=1.7e+02 Score=21.16 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=41.1
Q ss_pred CEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.++.-..-| |=+...+..++.|+.++.+++..+...+++.+.+.+.+....+=.|++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 96 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILV 96 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 35555444444 445667788899999999999988777778888888776555544443
No 428
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.35 E-value=1.8e+02 Score=21.25 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=41.0
Q ss_pred CEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.++.-..-| |-+...+..++.|++++.++++.+-...++.+.+.+.+..+.+=.|++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILV 95 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 35555544444 445666788899999999999988777777788888766555544443
No 429
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=35.32 E-value=1.6e+02 Score=20.71 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=24.0
Q ss_pred CEEEEEc-CC--CchHHHHHHHHhhcCCC-ceEEEccc
Q 042938 12 PVVIFSK-SE--CCICFSIQTLICGFGAN-PTVYELDQ 45 (106)
Q Consensus 12 ~v~vf~~-~~--Cp~C~~~~~~L~~~~v~-~~~v~vd~ 45 (106)
+|++... +. =.++...+..|.++|+. ...++++.
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~ 67 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVRE 67 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCC
Confidence 5665543 22 34688999999999995 67788864
No 430
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=35.31 E-value=2.2e+02 Score=22.29 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC---------CCCccEEEECC---------------eEeecchHH
Q 042938 26 SIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC---------QPTVPAVFIGQ---------------RLVGGPNQV 81 (106)
Q Consensus 26 ~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~---------~~tvP~ifv~g---------------~~iGg~~~~ 81 (106)
++..+=..+|.....+--++....++..+++++++. +.++|.+..+| -+-|.-+-.
T Consensus 117 qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y 196 (469)
T PLN02474 117 QIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVF 196 (469)
T ss_pred HHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHH
Confidence 333333445555544444444444445556665532 23455555443 123444556
Q ss_pred HhHHHhCCchHHHHhcCceeec
Q 042938 82 MSLHVQNELGPLLVRAGAIWLW 103 (106)
Q Consensus 82 ~~~~~~g~L~~~L~~~g~~~~~ 103 (106)
.++..+|-|+++ .+.|..|++
T Consensus 197 ~aL~~sG~Ld~l-~~~G~eyif 217 (469)
T PLN02474 197 PSLMNSGKLDAL-LSQGKEYVF 217 (469)
T ss_pred HHHHhCChHHHH-HhcCCEEEE
Confidence 778888888875 556666553
No 431
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.16 E-value=1.2e+02 Score=23.71 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=25.4
Q ss_pred CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC---CCCccEEEECC
Q 042938 21 CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC---QPTVPAVFIGQ 72 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~---~~tvP~ifv~g 72 (106)
|..|...+.+....+.++.++|-.......++++.+..... ......++||.
T Consensus 70 Cg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDE 124 (491)
T PRK14964 70 CGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDE 124 (491)
T ss_pred ccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeC
Confidence 55555555555555555555544333333445555443311 12344566776
No 432
>PHA00729 NTP-binding motif containing protein
Probab=35.07 E-value=1.2e+02 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=20.3
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFG 35 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~ 35 (106)
.+++++.|++.=+.-+..+..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999988888887764
No 433
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=34.93 E-value=35 Score=20.87 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.4
Q ss_pred CCccEEEECCeEeecc
Q 042938 63 PTVPAVFIGQRLVGGP 78 (106)
Q Consensus 63 ~tvP~ifv~g~~iGg~ 78 (106)
..-|.|+|||+.+|..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 5678999999999864
No 434
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.67 E-value=70 Score=22.26 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=18.5
Q ss_pred EEcCCCchHHHHHHHHhhcCCC
Q 042938 16 FSKSECCICFSIQTLICGFGAN 37 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L~~~~v~ 37 (106)
+-+..||.++.+|+.|.+.++.
T Consensus 151 ~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 151 SKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred eccccCcHHHHHHHHHHHcCCC
Confidence 4456699999999999998886
No 435
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.66 E-value=97 Score=24.23 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=23.0
Q ss_pred CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC---CCCccEEEECCe
Q 042938 21 CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC---QPTVPAVFIGQR 73 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~---~~tvP~ifv~g~ 73 (106)
|..|...+.+-.....++.++|-.......++++.+..... ......++||.-
T Consensus 73 Cg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~ 128 (509)
T PRK14958 73 CNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEV 128 (509)
T ss_pred CCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEECh
Confidence 44444444443333344444443223333445555544321 123446667664
No 436
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.63 E-value=1.8e+02 Score=21.22 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=41.2
Q ss_pred CEEEEEcCCC----chHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSEC----CICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~C----p~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.++.-..- -|-+..++..++.|+.++.+++..+...+++.+.+.+.+..+++=.|++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILV 95 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4545444444 4455667788999999999999887776777788888876565545544
No 437
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.58 E-value=1.8e+02 Score=21.11 Aligned_cols=59 Identities=5% Similarity=0.107 Sum_probs=41.0
Q ss_pred CEEEEEcCC----CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSE----CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-.. .-|=+...+..++.|+.++.+++..+...+++.+.+.+.+..+.+=.|++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILV 95 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 344444433 44555667788999999999999988777778888888876555544444
No 438
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=34.54 E-value=1.5e+02 Score=20.08 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=42.7
Q ss_pred chHHHHHHHHhhc-CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchHHHHhc
Q 042938 22 CICFSIQTLICGF-GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRA 97 (106)
Q Consensus 22 p~C~~~~~~L~~~-~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~~ 97 (106)
.|...+++.|.++ |.+...+++...++ ..+.+ ...=.||+.| |....+.+..+...|.+.|+++
T Consensus 46 ~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l------~~ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 46 EYTARFYAAFESLRGVEVSHLHLFDTED---PLDAL------LEADVIYVGG---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred HHHHHHHHHHhhccCcEEEEEeccCccc---HHHHH------hcCCEEEECC---chHHHHHHHHHHcCHHHHHHHH
Confidence 4677888999999 88877666544222 22333 2234688888 7777777766666788888764
No 439
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=34.41 E-value=1.4e+02 Score=20.01 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=34.5
Q ss_pred EEEEEcCCCchH-HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH----h-CCCCCccEEEECC
Q 042938 13 VVIFSKSECCIC-FSIQTLICGFGANPTVYELDQIPNGPQIERALQQ----L-GCQPTVPAVFIGQ 72 (106)
Q Consensus 13 v~vf~~~~Cp~C-~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~----~-~~~~tvP~ifv~g 72 (106)
++=++-++-.++ ..+.+++.+....+-.+|+..+.+.+++.+.+.. . ..++.+|.+++.-
T Consensus 36 ~iNLGfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~ 101 (178)
T PF14606_consen 36 VINLGFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSP 101 (178)
T ss_dssp EEEEE-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE-
T ss_pred eEeeeecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 444444553344 4567888888888888888766555554443333 3 6678999999973
No 440
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=34.19 E-value=1.7e+02 Score=21.44 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=43.1
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCce--EEEcccCCCc-h-HHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPT--VYELDQIPNG-P-QIERALQQLGCQPTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~--~v~vd~~~~~-~-~~~~~l~~~~~~~tvP~ifv~g~~iGg~~ 79 (106)
.|.+|+ +.|..-..+-....+.|++.. +.-.|...+. + .+.......+++..|-.|.||.+.+-+.+
T Consensus 78 ~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~ 148 (305)
T COG5309 78 SIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEALNRND 148 (305)
T ss_pred eEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhhhcCC
Confidence 588898 888888888888888886532 2233332222 1 22223333466788888999998876554
No 441
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=34.16 E-value=1.8e+02 Score=20.96 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR 73 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~ 73 (106)
..+++|+-++|.-..-++.+..+.+..+.............+...+... .....+|+|.-
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l---~~~~vl~IDEi 111 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNL---EEGDVLFIDEI 111 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhc---ccCCEEEEecH
Confidence 3589999999999999999999999877655443333333344444332 23557888873
No 442
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=34.02 E-value=35 Score=17.63 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=13.0
Q ss_pred CCccEEEECCeEeecch
Q 042938 63 PTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 63 ~tvP~ifv~g~~iGg~~ 79 (106)
..++.|||||+.+-...
T Consensus 18 ~GI~~V~VNG~~vv~~g 34 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVEDG 34 (48)
T ss_dssp BSEEEEEETTEEEECTT
T ss_pred CCEEEEEECCEEEEECC
Confidence 46899999999865443
No 443
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=34.01 E-value=2e+02 Score=21.38 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=33.5
Q ss_pred CCEEEEEcC----CCchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKS----ECCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~----~Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+ .++...++...|.+.|+.+..++ +..++....+.+.+...
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 82 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELC 82 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH
Confidence 466666543 26778899999999999877663 66677666665555443
No 444
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.44 E-value=1.9e+02 Score=21.00 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=41.0
Q ss_pred CEEEEEcCCCchH----HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCIC----FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-..-|.+ +.-.+..++.|+.++.++++.+....++.+.+.+.+..+++=.|++
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILV 96 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3545544444444 4556777889999999999988777777788888776555555544
No 445
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=33.34 E-value=37 Score=18.53 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=10.1
Q ss_pred EEEECCeEeecc
Q 042938 67 AVFIGQRLVGGP 78 (106)
Q Consensus 67 ~ifv~g~~iGg~ 78 (106)
.|++||+++|-.
T Consensus 14 ~V~vdg~~~G~t 25 (71)
T PF08308_consen 14 EVYVDGKYIGTT 25 (71)
T ss_pred EEEECCEEeccC
Confidence 689999999943
No 446
>CHL00195 ycf46 Ycf46; Provisional
Probab=33.26 E-value=1.5e+02 Score=23.19 Aligned_cols=35 Identities=0% Similarity=0.068 Sum_probs=30.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEccc
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQ 45 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~ 45 (106)
..|.+|+-|+|.-..-++.+-.+.+.++..++...
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 45999999999999999999999999988777643
No 447
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=33.22 E-value=68 Score=20.02 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=18.2
Q ss_pred CCCCccEEEECCeE-eecchHHHhH
Q 042938 61 CQPTVPAVFIGQRL-VGGPNQVMSL 84 (106)
Q Consensus 61 ~~~tvP~ifv~g~~-iGg~~~~~~~ 84 (106)
|...+|.|.+|+++ |-|-.|+...
T Consensus 80 gi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 80 GITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred CccccCEEEEcCCeEEecccHHHHH
Confidence 34899999999986 4677777654
No 448
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.13 E-value=1.9e+02 Score=20.96 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=41.0
Q ss_pred CEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.++.-..-| |-+...+..++.|+.++.+++..+...+++.+.+.+.+..+++=.|++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIiv 94 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILV 94 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 35455444444 445566778889999999999887777777788888776566544444
No 449
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=33.04 E-value=86 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCCCceEEEccc
Q 042938 25 FSIQTLICGFGANPTVYELDQ 45 (106)
Q Consensus 25 ~~~~~~L~~~~v~~~~v~vd~ 45 (106)
.++.++|++.+++|+.+....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 467899999999999888774
No 450
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.80 E-value=2e+02 Score=21.22 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+. .++..++...|.+.++.+..++ +..++....+.+.....
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~ 76 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLA 76 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 4566666543 5677899999999999887664 66677766666665554
No 451
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=32.74 E-value=1.4e+02 Score=20.09 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=32.0
Q ss_pred HHHHHhhcCCC-ceEEEcccCCC-chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhC
Q 042938 27 IQTLICGFGAN-PTVYELDQIPN-GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQN 88 (106)
Q Consensus 27 ~~~~L~~~~v~-~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g 88 (106)
+.+.+.+.|++ ...+|++.... .....+.+++......+|...-+| |...+++.++.+.|
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~Gg--I~~~e~~~~~~~~G 95 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGG--IRSLEDIERLLDLG 95 (234)
T ss_pred HHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCC--cCCHHHHHHHHHcC
Confidence 33445567876 45567665422 211122333332223578776666 66777777766655
No 452
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=32.72 E-value=2e+02 Score=21.16 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=14.3
Q ss_pred cchHH-HhHHHhCCchHHHHhcCceee
Q 042938 77 GPNQV-MSLHVQNELGPLLVRAGAIWL 102 (106)
Q Consensus 77 g~~~~-~~~~~~g~L~~~L~~~g~~~~ 102 (106)
|.-++ ..+..+|-|+. |.+.|..|+
T Consensus 121 GhGdiy~aL~~sGlLd~-l~~~Gikyi 146 (315)
T cd06424 121 GHGDVHTLLYNSGLLKK-WIEAGYKWL 146 (315)
T ss_pred CchHHHHHHHHCCcHHH-HHHCCCEEE
Confidence 44344 44556666555 566777665
No 453
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=32.62 E-value=1.2e+02 Score=19.90 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=22.2
Q ss_pred CCEEEEE-cCCCchHHH-HHHHHhhcCCCc-eEEEc
Q 042938 11 KPVVIFS-KSECCICFS-IQTLICGFGANP-TVYEL 43 (106)
Q Consensus 11 ~~v~vf~-~~~Cp~C~~-~~~~L~~~~v~~-~~v~v 43 (106)
..+++|. ++-|++|.. +..+.+++|++. ++++.
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 3456654 577999974 467778899984 33333
No 454
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=32.56 E-value=95 Score=17.31 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.8
Q ss_pred EEEECCeEeecc
Q 042938 67 AVFIGQRLVGGP 78 (106)
Q Consensus 67 ~ifv~g~~iGg~ 78 (106)
-|++|+++||-.
T Consensus 31 EV~~g~EfiGvi 42 (63)
T PF11324_consen 31 EVYIGDEFIGVI 42 (63)
T ss_pred EEEeCCEEEEEE
Confidence 489999999854
No 455
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.14 E-value=2e+02 Score=20.86 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=41.3
Q ss_pred CEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-..-| |-+.-.+..++.|+.++.++++.+...+++.+.+.+.+..+++=.|++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 94 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILV 94 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 45555554444 444556777889999999999888777778888888776555545544
No 456
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=32.09 E-value=1.7e+02 Score=22.22 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=15.5
Q ss_pred EEEEEcCCCchHH----HHHHHHh-hcCCCceEEEcccC
Q 042938 13 VVIFSKSECCICF----SIQTLIC-GFGANPTVYELDQI 46 (106)
Q Consensus 13 v~vf~~~~Cp~C~----~~~~~L~-~~~v~~~~v~vd~~ 46 (106)
|+.++...|..-. .+++.+. +.|+++-.++.|..
T Consensus 354 VI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~ 392 (413)
T TIGR02260 354 LLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLV 392 (413)
T ss_pred EEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 4444555554322 2233333 25666555555543
No 457
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=32.06 E-value=41 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCccEEEECCeEeecchHHHhHHHhCCchH
Q 042938 63 PTVPAVFIGQRLVGGPNQVMSLHVQNELGP 92 (106)
Q Consensus 63 ~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~ 92 (106)
...|.+|.++ ..|.|++++++.+.|.+.+
T Consensus 58 v~~pvtvcGD-vHGqf~dl~ELfkiGG~~p 86 (319)
T KOG0371|consen 58 VNCPVTVCGD-VHGQFHDLIELFKIGGLAP 86 (319)
T ss_pred cccceEEecC-cchhHHHHHHHHHccCCCC
Confidence 3567887777 6799999999998887643
No 458
>PLN02790 transketolase
Probab=32.03 E-value=1.5e+02 Score=24.05 Aligned_cols=89 Identities=11% Similarity=-0.023 Sum_probs=49.5
Q ss_pred CCEEEEE-cCCCchHHHHHHHHhhcCCCceEEEcccCCCchH-HHHHHHHhCCCCCccEEEECCeEeecchHH-------
Q 042938 11 KPVVIFS-KSECCICFSIQTLICGFGANPTVYELDQIPNGPQ-IERALQQLGCQPTVPAVFIGQRLVGGPNQV------- 81 (106)
Q Consensus 11 ~~v~vf~-~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~-~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~------- 81 (106)
.++++.+ .+-...|.++.+.|.+.|+....+++-...-..+ ...+....-+...-+.|.+-....+|+...
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~ 620 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKV 620 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceE
Confidence 3555543 3567889999999999999999998765422222 212222222212224454444334554432
Q ss_pred ---HhHHHhCCchHHHHhcCc
Q 042938 82 ---MSLHVQNELGPLLVRAGA 99 (106)
Q Consensus 82 ---~~~~~~g~L~~~L~~~g~ 99 (106)
..+-.+|...++++..|.
T Consensus 621 igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 621 IGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred EEeCCCcCcCCHHHHHHHhCC
Confidence 123356677777766664
No 459
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=31.81 E-value=46 Score=16.81 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=21.8
Q ss_pred ccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938 44 DQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN 79 (106)
Q Consensus 44 d~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~ 79 (106)
+.+....++.+.+.+.+ ...+|.+=-+|+++|=.+
T Consensus 13 ~~~~~l~~~~~~~~~~~-~~~~~V~d~~~~~~G~is 47 (57)
T PF00571_consen 13 SPDDSLEEALEIMRKNG-ISRLPVVDEDGKLVGIIS 47 (57)
T ss_dssp ETTSBHHHHHHHHHHHT-SSEEEEESTTSBEEEEEE
T ss_pred cCcCcHHHHHHHHHHcC-CcEEEEEecCCEEEEEEE
Confidence 44444455555665555 377888767788888543
No 460
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit. This model represents the carbon-monoxide dehydrogenase catalytic subunit. This protein is related to prismane (also called hybrid cluster protein), a complex whose activity is not yet fully described; the two share similar sets of ligands to unusual metal-containing clusters.
Probab=31.78 E-value=42 Score=27.08 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=26.9
Q ss_pred ccEEEECCeEeecchHHHhHHHhCCchHHHHhcCce
Q 042938 65 VPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100 (106)
Q Consensus 65 vP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~~g~~ 100 (106)
-|.|.|.|...--...+.+..++.+|++.++++|+.
T Consensus 245 ~vnIlV~GH~p~l~~~iv~~~~~~el~~~ak~~Gak 280 (621)
T TIGR01702 245 YVNIVVNGHQPLLSEILCEAARDEDIQDEAKAAGAK 280 (621)
T ss_pred CcEEEEECCCchHHHHHHHHhhchhHHHHHHHcCCC
Confidence 445555565555566778888889999999999983
No 461
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=31.76 E-value=1.6e+02 Score=24.00 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=39.0
Q ss_pred CEEEEEc-CCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938 12 PVVIFSK-SECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ 80 (106)
Q Consensus 12 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~ 80 (106)
.++|.+. +....|.++...|.+.|+..+.+|+... |-..+..+.+.+.+ + + .|.+.+..+||+-.
T Consensus 546 dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~--~-~-vVt~Ee~~~GG~Gs 612 (641)
T PLN02234 546 RVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSH--E-V-LITVEEGSIGGFGS 612 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhC--C-E-EEEECCCCCCcHHH
Confidence 4555443 5577889999999999999999998743 33333222222211 1 2 34344444599954
No 462
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=31.72 E-value=1.9e+02 Score=22.80 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHhhhhCCCEEEEEcCCCc-----hHHHHHHHHhhc-----CCCceEEEcccCCCc
Q 042938 4 VTRMVNEKPVVIFSKSECC-----ICFSIQTLICGF-----GANPTVYELDQIPNG 49 (106)
Q Consensus 4 ~~~~~~~~~v~vf~~~~Cp-----~C~~~~~~L~~~-----~v~~~~v~vd~~~~~ 49 (106)
++++-+.-.|.+|..+.-| +=.+++.+|+++ ++.++++|-...++.
T Consensus 43 L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~ 98 (552)
T TIGR03521 43 VKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDE 98 (552)
T ss_pred HHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Confidence 3444344456677776655 346788889776 466777776665543
No 463
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=31.65 E-value=1.7e+02 Score=20.04 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCC-ceEEEcccCCC-chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHh
Q 042938 26 SIQTLICGFGAN-PTVYELDQIPN-GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQ 87 (106)
Q Consensus 26 ~~~~~L~~~~v~-~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~ 87 (106)
.+.+.|.+.|+. +...|++.... .....+.+.+......+|.+..+| |...+++..+...
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GG--I~s~~d~~~~l~~ 92 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGG--IRSLEDARRLLRA 92 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCC--CCCHHHHHHHHHc
Confidence 445567778887 45667775321 111122333332224589887777 3455666555443
No 464
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=31.52 E-value=1.9e+02 Score=22.34 Aligned_cols=68 Identities=6% Similarity=0.028 Sum_probs=42.6
Q ss_pred HhhhhCC---CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh---CCCCCccEEEECCe
Q 042938 5 TRMVNEK---PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL---GCQPTVPAVFIGQR 73 (106)
Q Consensus 5 ~~~~~~~---~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~---~~~~tvP~ifv~g~ 73 (106)
.+++... .+++|+-|+|.-..-++-+-...+..|..++--.. .-.++++.+++. .....-+.+|+|..
T Consensus 40 rr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-gvkdlr~i~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 40 RRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-GVKDLREIIEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred HHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-cHHHHHHHHHHHHHHHhcCCceEEEEehh
Confidence 4455433 47889999999999998888888999887763322 112333333322 21123457898864
No 465
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=31.46 E-value=2.1e+02 Score=21.00 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=34.8
Q ss_pred CCEEEEEcCC----CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE----CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+. .+...++...|.+.|+++..++ +..++..+.+.+.....
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 79 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIA 79 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH
Confidence 4566655443 5567889999999999988764 77777777666665544
No 466
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.39 E-value=22 Score=20.66 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=10.5
Q ss_pred CCchH-HHHHHHHhhcCCCc
Q 042938 20 ECCIC-FSIQTLICGFGANP 38 (106)
Q Consensus 20 ~Cp~C-~~~~~~L~~~~v~~ 38 (106)
.||.| .+++++|.+-|+-|
T Consensus 35 ~ce~c~a~~kk~l~~vgi~f 54 (82)
T COG2331 35 TCEECGARLKKLLNAVGIVF 54 (82)
T ss_pred cChhhChHHHHhhccceEEE
Confidence 36666 35566666655544
No 467
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.91 E-value=1.5e+02 Score=20.56 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh--CCCCCccEEEECCeE
Q 042938 23 ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL--GCQPTVPAVFIGQRL 74 (106)
Q Consensus 23 ~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~--~~~~tvP~ifv~g~~ 74 (106)
+|...+.+.....--.-.+||......+.+...+... .....||.+.||++.
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~ 127 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKC 127 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccc
Confidence 5556666665555556667777665544444444333 223689999999874
No 468
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=30.71 E-value=61 Score=19.32 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=11.4
Q ss_pred cEEEECCeEe--ecchHHHhH
Q 042938 66 PAVFIGQRLV--GGPNQVMSL 84 (106)
Q Consensus 66 P~ifv~g~~i--Gg~~~~~~~ 84 (106)
-..|.||++. -..+++.++
T Consensus 50 ~v~~~GGEPll~~~~~~l~~~ 70 (119)
T PF13394_consen 50 TVVFTGGEPLLYLNPEDLIEL 70 (119)
T ss_dssp EEEEESSSGGGSTTHHHHHHH
T ss_pred EEEEECCCCccccCHHHHHHH
Confidence 3678888876 444444443
No 469
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=30.59 E-value=1.2e+02 Score=18.01 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=11.8
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGAN 37 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~ 37 (106)
+|++|...++.....+...|...|.+
T Consensus 81 ~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 81 TVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred EEEEECCCCCccHHHHHHHHHHcCCC
Confidence 34444444334444444455555443
No 470
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=30.53 E-value=1.8e+02 Score=21.23 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=41.4
Q ss_pred CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh-CC-CCCccEEEECCeEeecchHHHhHHHhC
Q 042938 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL-GC-QPTVPAVFIGQRLVGGPNQVMSLHVQN 88 (106)
Q Consensus 12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~-~~-~~tvP~ifv~g~~iGg~~~~~~~~~~g 88 (106)
+|++|...+-..+..+..+|...|.+ ...++..- ...+...... .. ....|.+.++|...-|.+++.+....+
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L~~~G~~--v~~L~GG~--~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~ 150 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLLAQIGFR--VPRLEGGY--KAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred cEEEEECCCChHHHHHHHHHHHcCCC--EEEecChH--HHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcC
Confidence 48999866667888999999999974 33444321 1111111111 11 122333446776667777777665444
No 471
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=30.07 E-value=1.6e+02 Score=22.83 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred CEEEEEc-CCCchHHHHHHHHhhcCCCceEEEcccC-CCch-HHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938 12 PVVIFSK-SECCICFSIQTLICGFGANPTVYELDQI-PNGP-QIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS 83 (106)
Q Consensus 12 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~-~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~ 83 (106)
.++|++. +....|.++.+.|.+.|++.+.+|+... |-.. .+.+.+++. ..+ .++-++...||+-....
T Consensus 342 DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt---~~v-vtvEE~~~~gGlG~~va 412 (464)
T PRK11892 342 DVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKT---NRL-VTVEEGWPQSGVGAEIA 412 (464)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhc---CeE-EEEeCCCcCCcHHHHHH
Confidence 4555433 5577899999999999999999998764 2222 244444322 223 45566777888865433
No 472
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=30.02 E-value=44 Score=20.53 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHHHHhh
Q 042938 14 VIFSKSECCICFSIQTLICG 33 (106)
Q Consensus 14 ~vf~~~~Cp~C~~~~~~L~~ 33 (106)
-+--.+.||.|.+-+.-|.+
T Consensus 27 k~H~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 27 KQHNSSQCPSCNKKRAELAQ 46 (104)
T ss_pred cccCcccChHHHHHHHHHHH
Confidence 34445789999987655543
No 473
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=29.82 E-value=54 Score=22.06 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=38.1
Q ss_pred CchHHHHHHHHhhcCCCce-EEEcccCCCchH-HHHHHHHhCCCCCccEEE---ECC---eEee--cchHHHhHHHhCCc
Q 042938 21 CCICFSIQTLICGFGANPT-VYELDQIPNGPQ-IERALQQLGCQPTVPAVF---IGQ---RLVG--GPNQVMSLHVQNEL 90 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~-~v~vd~~~~~~~-~~~~l~~~~~~~tvP~if---v~g---~~iG--g~~~~~~~~~~g~L 90 (106)
||.|..-=+.-++....|. ..++.......+ +.|.+.+--|..++-+-. -.| .++| |.+|+.++ .+.+
T Consensus 52 CPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPGy~sWQqe~Wl~hC~D~CaFlG~vg~~El~~~--~~~~ 129 (176)
T PF03691_consen 52 CPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPGYSSWQQEYWLAHCDDYCAFLGYVGWEELKAM--PEEL 129 (176)
T ss_pred CHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCCCcccccchhhhhcCCHHHhcCCCCHHHHHHH--HHHH
Confidence 9999877666666666653 233333212233 444443333333333210 111 2333 66777777 3566
Q ss_pred hHHHHhcC
Q 042938 91 GPLLVRAG 98 (106)
Q Consensus 91 ~~~L~~~g 98 (106)
.+++++..
T Consensus 130 ~~~~~~~~ 137 (176)
T PF03691_consen 130 EEVLEDYE 137 (176)
T ss_pred HHHHHHHh
Confidence 66666543
No 474
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=29.80 E-value=47 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=14.6
Q ss_pred EcCCCchHH-HHHHHHhhcCC
Q 042938 17 SKSECCICF-SIQTLICGFGA 36 (106)
Q Consensus 17 ~~~~Cp~C~-~~~~~L~~~~v 36 (106)
+.--||.|+ .|++.+++.++
T Consensus 14 ~tLPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 14 STLPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred hcCCCHHHHHHHHHHHHhcCc
Confidence 344599995 77888887765
No 475
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=29.68 E-value=2.1e+02 Score=23.19 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=42.6
Q ss_pred CEEEEEc-CCCchHHHHHHHHhhcCCCceEEEccc-CCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHH
Q 042938 12 PVVIFSK-SECCICFSIQTLICGFGANPTVYELDQ-IPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVM 82 (106)
Q Consensus 12 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~v~vd~-~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~ 82 (106)
.++|.+. +..+.|.++.+.|.+.|++.+.+|+.. .|-..+ .+..... .....++..+...||+....
T Consensus 506 ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~---~i~sv~k-~~~vvvveE~~~~gG~g~~v 574 (641)
T PRK12571 506 DVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEA---LTDLLVR-HHIVVIVEEQGAMGGFGAHV 574 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHH---HHHHHhh-hCCEEEEECCCCCCCHHHHH
Confidence 4555433 557788899999999999999999865 232223 3322222 22456666766679987543
No 476
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=29.58 E-value=65 Score=19.52 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.5
Q ss_pred CCccEEE-ECCeEeecchHHHhHHH
Q 042938 63 PTVPAVF-IGQRLVGGPNQVMSLHV 86 (106)
Q Consensus 63 ~tvP~if-v~g~~iGg~~~~~~~~~ 86 (106)
..||.+| .+...+-|.||+.+..+
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~ 27 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILR 27 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhC
Confidence 5789999 89999999999987653
No 477
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.51 E-value=2.2e+02 Score=20.65 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 11 KPVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 11 ~~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
..+.+..-..-| |-+...+..++.|++++.+.++.+...+++.+.+.+.+....+=.|++
T Consensus 30 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 93 (287)
T PRK14173 30 PHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILV 93 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 345555555444 444566778889999999999887766677778887766555544444
No 478
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=29.49 E-value=2.2e+02 Score=21.06 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCEEEEEcC----CCchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKS----ECCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~----~Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
+++++.+.+ ..++-.++...|.+.|+++..++ +..++..+.+.+.....
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~ 77 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAM 77 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH
Confidence 455554432 26788899999999999887664 67777777666665444
No 479
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=29.47 E-value=1.1e+02 Score=16.87 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=14.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHhhcCCC
Q 042938 11 KPVVIFSKSECCICFSIQTLICGFGAN 37 (106)
Q Consensus 11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~ 37 (106)
.+|++|. ..+..+..+...|.+.|.+
T Consensus 57 ~~iv~~c-~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 57 KPVVVYC-RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CeEEEEe-CCCcHHHHHHHHHHHcCCC
Confidence 3455565 4455556666666666654
No 480
>PRK02935 hypothetical protein; Provisional
Probab=29.30 E-value=28 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=13.6
Q ss_pred CCchHHHHHHHHhhcC
Q 042938 20 ECCICFSIQTLICGFG 35 (106)
Q Consensus 20 ~Cp~C~~~~~~L~~~~ 35 (106)
.||.|.+..+.|-+-.
T Consensus 72 ~CP~C~K~TKmLGrvD 87 (110)
T PRK02935 72 ICPSCEKPTKMLGRVD 87 (110)
T ss_pred ECCCCCchhhhcccee
Confidence 7999999999997654
No 481
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.09 E-value=1.3e+02 Score=24.86 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=30.4
Q ss_pred CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC---CCCccEEEECCeEeecchHHHhHHHhCCchHHHHh
Q 042938 21 CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC---QPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVR 96 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~---~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~ 96 (106)
|..|...+.+......++.++|-..+...+++++.+..... ....-+++||.-+ .+.-...+.|.+.|++
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah------~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVH------MLTNHAFNAMLKTLEE 150 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChH------hcCHHHHHHHHHhhcc
Confidence 44454444444444445444443322233445555544321 1223356666531 1122234456666665
No 482
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=29.08 E-value=81 Score=22.05 Aligned_cols=48 Identities=8% Similarity=0.152 Sum_probs=32.0
Q ss_pred EEcCCCchHHHHHHHHhhcCCCceE---EEcccCCCchHHHHHHHHhCCCCCccEEEEC
Q 042938 16 FSKSECCICFSIQTLICGFGANPTV---YELDQIPNGPQIERALQQLGCQPTVPAVFIG 71 (106)
Q Consensus 16 f~~~~Cp~C~~~~~~L~~~~v~~~~---v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~ 71 (106)
.++.+-|.|.-+...|++++..|.. +.+-.....+. ......|++||=
T Consensus 118 Ly~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpN--------YPe~nlPTl~VY 168 (240)
T KOG3170|consen 118 LYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPN--------YPESNLPTLLVY 168 (240)
T ss_pred eeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCC--------CcccCCCeEEEe
Confidence 6789999999999999999887743 33332221111 223678998874
No 483
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=29.06 E-value=89 Score=23.11 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=19.2
Q ss_pred CCCCCccEEEECCeEeecchHHHhH
Q 042938 60 GCQPTVPAVFIGQRLVGGPNQVMSL 84 (106)
Q Consensus 60 ~~~~tvP~ifv~g~~iGg~~~~~~~ 84 (106)
+..++.|.|||||.+-.|..-+.++
T Consensus 65 ~y~~~mplIFiGGVPRSGTTLMRAm 89 (378)
T KOG3988|consen 65 GYNRTMPLIFIGGVPRSGTTLMRAM 89 (378)
T ss_pred hhcccCceEEEcCCCCCchHHHHHH
Confidence 3358999999999988887655544
No 484
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=28.80 E-value=44 Score=16.31 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCCCce
Q 042938 25 FSIQTLICGFGANPT 39 (106)
Q Consensus 25 ~~~~~~L~~~~v~~~ 39 (106)
.+.|.+|.+.|++|.
T Consensus 7 ~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 7 AQLKRILDEHGIEFP 21 (35)
T ss_dssp HHHHHHHHHHT---S
T ss_pred HHHHHHHHHcCCCCC
Confidence 467889999998873
No 485
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.68 E-value=2.4e+02 Score=20.65 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=39.9
Q ss_pred EEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 13 VVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 13 v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
+.+.....-| |-+...+..++.|++++.++++.+-..+++.+.+.+.+..+++=.|++
T Consensus 35 LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIiv 96 (297)
T PRK14186 35 LAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILL 96 (297)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4444444444 444556777889999999999887777777788888766555544444
No 486
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=28.62 E-value=1.1e+02 Score=22.61 Aligned_cols=74 Identities=18% Similarity=0.454 Sum_probs=43.2
Q ss_pred EEEEEc---CCCchHH----------------HHHHHHhhcCCCceE---EEcccCCCchH--HHHHHHHhCCCCCccEE
Q 042938 13 VVIFSK---SECCICF----------------SIQTLICGFGANPTV---YELDQIPNGPQ--IERALQQLGCQPTVPAV 68 (106)
Q Consensus 13 v~vf~~---~~Cp~C~----------------~~~~~L~~~~v~~~~---v~vd~~~~~~~--~~~~l~~~~~~~tvP~i 68 (106)
|++.+- .+|.||. .....+.+.|+.|.. +|-|..+++.. +.+-.+.+- ..-|.|
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK--~k~p~i 191 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIK--EKAPEI 191 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHH--hhCccc
Confidence 455443 4588995 456778899999865 44455555432 444433332 345666
Q ss_pred EEC---CeEeecchHHHhHHHhC
Q 042938 69 FIG---QRLVGGPNQVMSLHVQN 88 (106)
Q Consensus 69 fv~---g~~iGg~~~~~~~~~~g 88 (106)
+|. ..+-|..+-+..+..+|
T Consensus 192 lvE~L~pDF~Gd~~~Ve~va~SG 214 (360)
T KOG2672|consen 192 LVECLTPDFRGDLKAVEKVAKSG 214 (360)
T ss_pred chhhcCccccCchHHHHHHHhcC
Confidence 664 35666666665555555
No 487
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.50 E-value=2.4e+02 Score=20.58 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=41.0
Q ss_pred CEEEEEcCCCc----hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECC----ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-..-| |=+..++..++.|+.++.+.++.+...+++.+.+.+.+..+.+=.|++
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlv 96 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILV 96 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEE
Confidence 35555554444 444566778889999999999888777778888888866555544444
No 488
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.47 E-value=2.3e+02 Score=20.52 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=40.8
Q ss_pred CEEEEEcCCCchH----HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCIC----FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+.....-|.+ +...+..++.|+.++.+.++.+...+++.+.+.+.+..+++=.|++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILV 96 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4555555555544 4456778899999999999988777777788888766555544443
No 489
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.19 E-value=1.7e+02 Score=18.71 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=23.8
Q ss_pred chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchHHHHhcCceeec
Q 042938 49 GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLW 103 (106)
Q Consensus 49 ~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~~g~~~~~ 103 (106)
..++.+.|.+.+. .. +.++++|..+-+-++... ..+.|+++|.-+++
T Consensus 69 ~~~~~~~l~~~gl-~~-~~vivGG~~vi~~~d~~~------~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 69 CKGLRQKCDEAGL-EG-ILLYVGGNLVVGKQDFPD------VEKRFKEMGFDRVF 115 (134)
T ss_pred HHHHHHHHHHCCC-CC-CEEEecCCcCcChhhhHH------HHHHHHHcCCCEEE
Confidence 3445556665554 34 448888875433333221 22345666654443
No 490
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.18 E-value=2.4e+02 Score=20.50 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=36.9
Q ss_pred CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 21 CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 21 Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.-|=+.-.+..++.|+.++.++++.+...+++.+.+.+.+..+++=.|++
T Consensus 48 ~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlv 97 (285)
T PRK10792 48 QVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILV 97 (285)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 34555667788899999999999887777778888888876555544444
No 491
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=28.15 E-value=1.1e+02 Score=17.76 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=11.8
Q ss_pred HHHHHHHhCCC-CCccEEEECCeEe
Q 042938 52 IERALQQLGCQ-PTVPAVFIGQRLV 75 (106)
Q Consensus 52 ~~~~l~~~~~~-~tvP~ifv~g~~i 75 (106)
+.+++...+.. ...|+ |+|+.|
T Consensus 10 L~~F~~~~g~~~~~~P~--i~g~~v 32 (93)
T smart00501 10 LYKFMEERGSPLKKIPV--IGGKPL 32 (93)
T ss_pred HHHHHHHcCCcCCcCCe--ECCEeC
Confidence 55555555432 34554 488755
No 492
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.97 E-value=2.4e+02 Score=20.49 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchH----HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCIC----FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-..-|.+ +...+..++.|+.++.+.++.+...+++.+.+.+.+..+.+=.|++
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4555555555544 4556778889999999999887676777778887766555544444
No 493
>PF05949 DUF881: Bacterial protein of unknown function (DUF881); InterPro: IPR010273 This family consists of a series of hypothetical bacterial proteins. One of the family members Q45543 from SWISSPROT from Bacillus subtilis is thought to be involved in cell division and sporulation [].; PDB: 3GMG_B.
Probab=27.87 E-value=1.3e+02 Score=19.41 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=26.1
Q ss_pred cEEEECCe---------EeecchHHHhHHH-hCCchHHHHhcCceee
Q 042938 66 PAVFIGQR---------LVGGPNQVMSLHV-QNELGPLLVRAGAIWL 102 (106)
Q Consensus 66 P~ifv~g~---------~iGg~~~~~~~~~-~g~L~~~L~~~g~~~~ 102 (106)
+.+.|||+ .||..+.+..... .+.....|+..|.-..
T Consensus 79 ~~i~Vng~~i~~Py~I~AIGdp~~L~~al~~~~~~~~~~~~~gi~v~ 125 (149)
T PF05949_consen 79 GTILVNGRPISPPYVIKAIGDPETLYSALNIPGGVVDSLRQRGIRVT 125 (149)
T ss_dssp TEEEETTEEE-SSEEEEEES-HHHHHHHHTSTTSCHHHHHCTT-EEE
T ss_pred CEEEECCEEccCCEEEEEEeCHHHHHHHHccccHHHHHHHHcCCEEE
Confidence 57888885 5688888888777 7777777877776443
No 494
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.78 E-value=2.6e+02 Score=20.93 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=40.6
Q ss_pred CEEEEEcCCCchH----HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCIC----FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+..-..-|.+ +.-.+..++.|+.++.++++.+...+++.+.+.+.+..+++=.|++
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlV 150 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILV 150 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3444444444444 4556777889999999999988777778888888876555544444
No 495
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.75 E-value=2e+02 Score=21.07 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=47.4
Q ss_pred hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhC
Q 042938 9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQN 88 (106)
Q Consensus 9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g 88 (106)
.++++.+|+.+..+. -+.++-..+|++....++..-|+++...+.. ...+.--++++..-.---.|+++++.
T Consensus 6 ~~~~~~i~~~~~~~~--la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~---~~v~g~dV~ii~s~~~~~nd~l~eLl--- 77 (323)
T PRK02458 6 ADKQIKLFSLNSNLE--IAEKIAQAAGVPLGKLSSRQFSDGEIMINIE---ESVRGDDIYIIQSTSFPVNDHLWELL--- 77 (323)
T ss_pred CCCCeEEEECCCCHH--HHHHHHHHhCCceeeeEEEECCCCCEEEEec---CCcCCCeEEEEecCCCCCchHHHHHH---
Confidence 356788888776643 3344455678888888888888876411111 11111123334331111135666665
Q ss_pred CchHHHHhcCceee
Q 042938 89 ELGPLLVRAGAIWL 102 (106)
Q Consensus 89 ~L~~~L~~~g~~~~ 102 (106)
-+...|+++|+.++
T Consensus 78 l~~~alr~~~a~~i 91 (323)
T PRK02458 78 IMIDACKRASANTV 91 (323)
T ss_pred HHHHHHHHcCCceE
Confidence 45677788888543
No 496
>PRK09301 circadian clock protein KaiB; Provisional
Probab=27.69 E-value=1.5e+02 Score=18.16 Aligned_cols=65 Identities=6% Similarity=0.021 Sum_probs=39.1
Q ss_pred EEEEEcCCCchHHHHHHHH----hhc-C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-----CeEeecchH
Q 042938 13 VVIFSKSECCICFSIQTLI----CGF-G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-----QRLVGGPNQ 80 (106)
Q Consensus 13 v~vf~~~~Cp~C~~~~~~L----~~~-~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-----g~~iGg~~~ 80 (106)
..+|....-|-+.++.+-+ ++. + .+.+++||...|+.++ . ..-..+|++.-- -+.||.+++
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE---~----~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAE---E----DKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHh---H----CCeEEecHHhhcCCCCcceeeccccc
Confidence 5678888888887665444 432 2 3346678877776443 1 222456665432 267888887
Q ss_pred HHhH
Q 042938 81 VMSL 84 (106)
Q Consensus 81 ~~~~ 84 (106)
..+.
T Consensus 82 ~~kV 85 (103)
T PRK09301 82 REKV 85 (103)
T ss_pred HHHH
Confidence 6554
No 497
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=27.69 E-value=55 Score=21.55 Aligned_cols=19 Identities=16% Similarity=0.557 Sum_probs=12.9
Q ss_pred EEEcCCCchHHHHHHHHhh
Q 042938 15 IFSKSECCICFSIQTLICG 33 (106)
Q Consensus 15 vf~~~~Cp~C~~~~~~L~~ 33 (106)
+|+-|-|++|-...+.+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~k 20 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRK 20 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHH
Confidence 6899999999876665544
No 498
>PTZ00494 tuzin-like protein; Provisional
Probab=27.68 E-value=1.7e+02 Score=23.50 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=40.8
Q ss_pred CCEEEEEc-CCCchHHHHHHHHhhcCCCceEEEcccCCCch-HHHHHHHHhCCCCCccEEEECCe
Q 042938 11 KPVVIFSK-SECCICFSIQTLICGFGANPTVYELDQIPNGP-QIERALQQLGCQPTVPAVFIGQR 73 (106)
Q Consensus 11 ~~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~-~~~~~l~~~~~~~tvP~ifv~g~ 73 (106)
.+|++|+. .+|.-|.-.+....+.+++--.+||-..++.- .+-++ -.||.|-+.|.
T Consensus 395 PRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKA-------LgV~nve~CGD 452 (664)
T PTZ00494 395 PRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRA-------LGVSNVEVCGD 452 (664)
T ss_pred CcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHH-------hCCCChhhhcc
Confidence 35777766 67999999999999999999999998776642 23332 23666666664
No 499
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.65 E-value=2.4e+02 Score=20.40 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=40.7
Q ss_pred CEEEEEcCCCchH----HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938 12 PVVIFSKSECCIC----FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70 (106)
Q Consensus 12 ~v~vf~~~~Cp~C----~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv 70 (106)
.+.+.....-|.+ +.-.+..++.|+.++.+.++.+...+++.+.+.+.+....+=.|++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlv 96 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIML 96 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 3545554444544 4556778889999999999988777777788888766555544444
No 500
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=27.60 E-value=2.7e+02 Score=20.99 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCEEEEEcCC---CchHHHHHHHHhhcCCCceEEE-cccCCCchHHHHHHHHh
Q 042938 11 KPVVIFSKSE---CCICFSIQTLICGFGANPTVYE-LDQIPNGPQIERALQQL 59 (106)
Q Consensus 11 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~v~-vd~~~~~~~~~~~l~~~ 59 (106)
.++.|.+.+. .+...++...|.+.|+++..++ +..++..+.+.+.....
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~ 76 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFA 76 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHH
Confidence 4666666554 3456888899999999987764 66677766666655444
Done!