BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042941
(481 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/476 (63%), Positives = 375/476 (78%), Gaps = 8/476 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
++++ R E+RNK+EEC +K S+ELV E+LS VRNDWE AFTFF+WAGKQ GY S R
Sbjct: 103 LVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVR 162
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
EYH+MI+ILGK+RKFDTAW LIDEMR + PSLV QTLLI+IR+YCAVHDVG+AIN F
Sbjct: 163 EYHSMISILGKMRKFDTAWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTF 220
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+AYKRFK +GI+DFQ LLSALCRYKNV DA HL+FCNKD +PF+ KSFNI+LNGWCN+I
Sbjct: 221 HAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVI 280
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
GS REAERVWMEM G+ +DVVS+S +ISCYSK +L+KVL+LFD+MK+ IE DRKVY
Sbjct: 281 GSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVY 340
Query: 247 NAVIHALAKGRLVKDAISLMKSM-EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
NAV+HALAK V +A +LMK+M EEKG+ PNVVTYNSLIKPLCKARK +EA+Q FDEML
Sbjct: 341 NAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEML 400
Query: 306 QRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365
++G+ PTIRTYHAF+ I+RTGEEVF LL MRKMGC+PT +TYIMLI+K RWR F NV
Sbjct: 401 EKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVL 460
Query: 366 KVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425
+W+E+ E GPD SSY +IH LFLNGK+EEA+ YY EMK+K + P ++++Q W
Sbjct: 461 LLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWF 520
Query: 426 YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSFWE 481
KQ+ E++I K N I KKS++++ FLQQPE R+VVR G+SFW+
Sbjct: 521 SGKQYAEQRITDSKGE-----VNKGAIVKKSEREKNFLQQPEVRKVVREHGYSFWD 571
>sp|Q9SAH2|PP137_ARATH Pentatricopeptide repeat-containing protein At1g80880,
mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2
SV=1
Length = 540
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 239/424 (56%), Gaps = 9/424 (2%)
Query: 2 KTLVDILREFSHKRSEMRN--KIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQS 59
K L+D++R+ S SE +E+ ++ + ++ +R++W AF F W K+
Sbjct: 92 KGLIDLIRQVSELESEADAMASLEDSSFDLNHDSFYSLIWELRDEWRLAFLAFKWGEKRG 151
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119
+ MI +LG +KF+ AW LI +M S T++ + +++ RY A +D
Sbjct: 152 --CDDQKSCDLMIWVLGNHQKFNIAWCLIRDM----FNVSKDTRKAMFLMMDRYAAANDT 205
Query: 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIIL 179
+AI F +FK E FQGLL ALCR+ +++ AE M +K +FP + + FN+IL
Sbjct: 206 SQAIRTFDIMDKFKHTPYDEAFQGLLCALCRHGHIEKAEEFMLASKKLFPVDVEGFNVIL 265
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
NGWCNI EA+R+W EM I + S+S +ISC+SK NL LRL+D+MK+ G+
Sbjct: 266 NGWCNIWTDVTEAKRIWREMGNYCITPNKDSYSHMISCFSKVGNLFDSLRLYDEMKKRGL 325
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
+VYN++++ L + +A+ LMK + E+G+ P+ VTYNS+I+PLC+A KLD AR
Sbjct: 326 APGIEVYNSLVYVLTREDCFDEAMKLMKKLNEEGLKPDSVTYNSMIRPLCEAGKLDVARN 385
Query: 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
M+ +SPT+ T+HAFL+ + E+ +L M+ PT +T+++++ K + +
Sbjct: 386 VLATMISENLSPTVDTFHAFLEAVNF-EKTLEVLGQMKISDLGPTEETFLLILGKLFKGK 444
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE 419
Q N K+W E+ + + Y A I L G LE+A + Y EMK K + P +
Sbjct: 445 QPENALKIWAEMDRFEIVANPALYLATIQGLLSCGWLEKAREIYSEMKSKGFVGNPMLQK 504
Query: 420 LLQD 423
LL++
Sbjct: 505 LLEE 508
>sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200
OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1
Length = 523
Score = 252 bits (643), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 236/427 (55%), Gaps = 10/427 (2%)
Query: 2 KTLVDILREFSHKRSEMRNKI----EECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGK 57
++ +D+ H R KI ++CGI ++ ELV EV++ R+DW+ A+ K
Sbjct: 76 QSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVK 135
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
QS + S+ Y+ ++ +LGK+R+F+ + DEM + V ++T +L+ RY A H
Sbjct: 136 QSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRD---GFVNEKTYEVLLNRYAAAH 192
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177
V A+ F K F + F GLL LCRYK+V+ AE L + F + K+ N+
Sbjct: 193 KVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNM 252
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
ILNGWC ++G+ EA+R W ++ DVVS+ +I+ +K L K + L+ M
Sbjct: 253 ILNGWC-VLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDT 311
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
D K+ N VI AL + + +A+ + + + EKG PNVVTYNSL+K LCK R+ ++
Sbjct: 312 RRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKV 371
Query: 298 RQAFDEMLQRG--ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKF 355
+ +EM +G SP T+ L + ++V +LE M K C+ T+D Y ++ + +
Sbjct: 372 WELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFRLY 431
Query: 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415
+W + V ++W+E+ +G GPD+ +YT IH L GK+ EA Y+ EM K ++PEP
Sbjct: 432 VQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGMVPEP 491
Query: 416 KTDELLQ 422
+T+ LL
Sbjct: 492 RTEMLLN 498
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 234 bits (598), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 215/404 (53%), Gaps = 12/404 (2%)
Query: 16 SEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL 75
++ R++ EE + V E L+ NDW+ A FF W ++SG+ H+T ++ +I IL
Sbjct: 32 AKFRSQEEEDQSSYDQKTVCEALTCYSNDWQKALEFFNWVERESGFRHTTETFNRVIDIL 91
Query: 76 GKVRKFDTAWALIDEMRGG-ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF 134
GK +F+ +WALI+ M G E+ P+ VT I+ +RY H V AI+A+ F
Sbjct: 92 GKYFEFEISWALINRMIGNTESVPNHVT---FRIVFKRYVTAHLVQEAIDAYDKLDDFNL 148
Query: 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP-----FNTKSFNIILNGWCNIIGSS 189
F L+ ALC +K+V +AE L F K+V NTK N+IL GW + G
Sbjct: 149 R-DETSFYNLVDALCEHKHVVEAEELCF-GKNVIGNGFSVSNTKIHNLILRGWSKL-GWW 205
Query: 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249
+ + W +M G+ D+ S+S + K+ K ++L+ +MK ++ D YN V
Sbjct: 206 GKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTV 265
Query: 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309
I A+ + V+ I + + M E+G PNV T+N++IK LC+ ++ +A + DEM +RG
Sbjct: 266 IRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGC 325
Query: 310 SPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN 369
P TY + E+ L M + G +P DTY+ML++KF RW V VW
Sbjct: 326 QPDSITYMCLFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWGFLQPVLYVWK 385
Query: 370 EISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ E+G+ PD ++Y A+I AL G L+ A +Y EM E+ L P
Sbjct: 386 TMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP 429
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 211/409 (51%), Gaps = 6/409 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
ILR+F + ++ + E G+++ L+ VL+ + + FF+WA KQ Y HS
Sbjct: 89 ILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIE 148
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
Y +M+ IL K+R+F W LI+EMR + P L+ + ++L++R+ + V +AI
Sbjct: 149 VYKSMVKILSKMRQFGAVWGLIEEMR--KENPQLIEPELFVVLVQRFASADMVKKAIEVL 206
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
+F F F LL ALC++ +V+DA L + FP N + F +L GWC +
Sbjct: 207 DEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRV- 265
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G EA+ V ++M++ G D+V ++ ++S Y+ A + L M+R G E + Y
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 325
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
+I AL K +++A+ + ME +VVTY +L+ CK K+D+ D+M++
Sbjct: 326 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385
Query: 307 RGISPTIRTYHAFL---DIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363
+G+ P+ TY + + + EE L+E MR++ P Y ++I+ + +
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445
Query: 364 VFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412
++WNE+ ENG P ++ +I+ L G L EA ++ EM + L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLF 494
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 4/210 (1%)
Query: 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270
F ++ ++ A + K + + D+M + G E D V+ ++ AL K VKDA L + M
Sbjct: 186 FVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMR 245
Query: 271 EKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG---E 327
+ N+ + SL+ C+ K+ EA+ +M + G P I Y L
Sbjct: 246 MR-FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMA 304
Query: 328 EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALI 387
+ + LL MR+ G +P + Y +LI+ + + KV+ E+ D +YTAL+
Sbjct: 305 DAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALV 364
Query: 388 HALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
GK+++ + +M +K L+P T
Sbjct: 365 SGFCKWGKIDKCYIVLDDMIKKGLMPSELT 394
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/414 (28%), Positives = 215/414 (51%), Gaps = 8/414 (1%)
Query: 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG 60
A+ + IL +F+ S++ + E +K+S L+ EVL + N A + F WA Q G
Sbjct: 66 AERICKILTKFTD--SKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKG 123
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
+ H+T Y+ +I LGK+++F W+L+D+M+ + L++K+T ++ RRY V
Sbjct: 124 FKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK----LLSKETFALISRRYARARKVK 179
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FCNKDVFPFNTKSFNIIL 179
AI AF+ + F F + DF +L L + +NV DA+ + K F + KS+ I+L
Sbjct: 180 EAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILL 239
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
GW + R + V EM G DVV++ II+ + KA+ + +R F++M++
Sbjct: 240 EGWGQELNLLR-VDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNC 298
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
+ ++ ++I+ L + + DA+ + + G TYN+L+ C ++++++A +
Sbjct: 299 KPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYK 358
Query: 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
DEM +G+ P RTY L + + E + M C+PT TY ++++ F
Sbjct: 359 TVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKE 418
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ K+W+E+ G P +++LI AL KL+EA +Y+ EM + + P
Sbjct: 419 RLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRP 472
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 32/232 (13%)
Query: 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249
+EA + +M + G + F+ ++ SK+RN+ ++FD+MK+ E D K Y +
Sbjct: 179 KEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTIL 238
Query: 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309
+ + + + + M+++G P+VV Y +I CKA+K +EA + F+EM QR
Sbjct: 239 LEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQR-- 296
Query: 310 SPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN 369
C+P+ + LI ++ + + +
Sbjct: 297 ------------------------------NCKPSPHIFCSLINGLGSEKKLNDALEFFE 326
Query: 370 EISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421
+G + +Y AL+ A + ++E+A++ EM+ K + P +T +++
Sbjct: 327 RSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDII 378
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 40/223 (17%)
Query: 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255
W E +Q+G + +++ +I K + + L D MK + ++ + + A+
Sbjct: 117 WAE-NQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYAR 174
Query: 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRT 315
R VK+AI MEE G +N ++ L K+R + +A++ FD+M ++ P I++
Sbjct: 175 ARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKS 234
Query: 316 YHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN---EIS 372
Y LLE W Q N+ +V E+
Sbjct: 235 YTI-------------LLEG----------------------WGQELNLLRVDEVNREMK 259
Query: 373 ENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415
+ G PD +Y +I+A K EEA +++ EM+++ P P
Sbjct: 260 DEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSP 302
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 209/418 (50%), Gaps = 7/418 (1%)
Query: 7 ILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR 66
ILR + ++ + E GI + L+ VLS + + FFLWA KQ GY HS
Sbjct: 73 ILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYE 132
Query: 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126
+M+ IL K+R+F W LI+EMR +T P L+ + ++L+RR+ + + V +A+
Sbjct: 133 VCKSMVMILSKMRQFGAVWGLIEEMR--KTNPELIEPELFVVLMRRFASANMVKKAVEVL 190
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
++ F LL ALC+ +V++A + ++ FP N + F +L GWC
Sbjct: 191 DEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCR-E 249
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G EA+ V ++M + G+ D+V F+ ++S Y+ A + L + M++ G E + Y
Sbjct: 250 GKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCY 309
Query: 247 NAVIHALAKG-RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
+I AL + + + +A+ + ME G ++VTY +LI CK +D+ D+M
Sbjct: 310 TVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMR 369
Query: 306 QRGISPTIRTYHAFL---DIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
++G+ P+ TY + + EE L+E M++ GC P Y ++I+ + +
Sbjct: 370 KKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVK 429
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420
++WNE+ NG P ++ +I+ G L EA ++ EM + + P+ L
Sbjct: 430 EAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTL 487
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 201 bits (512), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 211/400 (52%), Gaps = 14/400 (3%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M ++E + +S +L+ EVL R+ + AF FF WA ++ G+AH +R Y++M++IL K
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
R+F+T ++++EM G G L+T +T I ++ + A + +A+ F K++KF +G
Sbjct: 208 TRQFETMVSVLEEM--GTKG--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 263
Query: 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC---NIIGSSREAER 194
+E LL +L R K ++A+ L K+ F N ++ ++LNGWC N+I EA R
Sbjct: 264 VETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI----EAAR 319
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
+W +M +G+ D+V+ + ++ ++R ++LF MK G + + Y +I
Sbjct: 320 IWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFC 379
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
K ++ AI M + G+ P+ Y LI +KLD + EM ++G P +
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 439
Query: 315 TYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
TY+A + ++ + E + M + +P+ T+ M++K + R + VW E+
Sbjct: 440 TYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEM 499
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ G PD +SYT LI L GK EA +Y EM +K +
Sbjct: 500 IKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGM 539
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 165/352 (46%), Gaps = 26/352 (7%)
Query: 95 ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE-----DFQGLLSALC 149
ETG S V T + R C V I+ +A R AV E ++ L
Sbjct: 116 ETGVSCVESSTNPEEVERVCKV------IDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 150 RYKNVQDAEHLMFC---NKDVFPFNTKSFNIILNGWCNIIGSSREAE---RVWMEMSQRG 203
R+++ + FC + F +++++N +++ I+ +R+ E V EM +G
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMS----ILAKTRQFETMVSVLEEMGTKG 225
Query: 204 ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263
+ + +F+ + ++ A+ K + +F+ MK+ + + N ++ +L + +L K+A
Sbjct: 226 L-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 284
Query: 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII 323
L ++E+ PN++TY L+ C+ R L EA + +++M+ +G+ P I ++ L+ +
Sbjct: 285 VLFDKLKER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGL 343
Query: 324 ---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380
R + L M+ G P +Y ++I+ F + + ++++ ++G PD
Sbjct: 344 LRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 403
Query: 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE 432
+ YT LI KL+ ++ EM+EK P+ KT L N++ E
Sbjct: 404 AVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPE 455
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 211/400 (52%), Gaps = 14/400 (3%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M ++E + +S +L+ EVL R+ + AF FF WA ++ G+AH++R Y++M++IL K
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
R+F+T ++++EM G G L+T +T I ++ + A + +A+ F K++KF +G
Sbjct: 208 TRQFETMVSVLEEM--GTKG--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 263
Query: 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC---NIIGSSREAER 194
+E LL +L R K ++A+ L K+ F N ++ ++LNGWC N+I EA R
Sbjct: 264 VETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI----EAAR 319
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
+W +M G+ D+V+ + ++ ++ ++LF MK G + + Y +I
Sbjct: 320 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFC 379
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
K ++ AI M + G+ P+ Y LI +KLD + EM ++G P +
Sbjct: 380 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 439
Query: 315 TYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
TY+A + ++ + E + M + +P+ T+ M++K + R + VW+E+
Sbjct: 440 TYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEM 499
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ G PD +SYT LI L GK EA +Y EM +K +
Sbjct: 500 IKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 539
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 172/374 (45%), Gaps = 40/374 (10%)
Query: 95 ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE-----DFQGLLSALC 149
ETG S V T + R C V I+ +A R AV E ++ L
Sbjct: 116 ETGVSCVESSTNPEEVERVCKV------IDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 150 RYKNVQDAEHLMFC---NKDVFPFNTKSFNIILNGWCNIIGSSREAE---RVWMEMSQRG 203
R+++ + FC + F ++++N +++ I+ +R+ E V EM +G
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHASRTYNSMMS----ILAKTRQFETMVSVLEEMGTKG 225
Query: 204 ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263
+ + +F+ + ++ A+ K + +F+ MK+ + + N ++ +L + +L K+A
Sbjct: 226 L-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 284
Query: 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-I 322
L ++E+ PN++TY L+ C+ R L EA + +++M+ G+ P I ++ L+ +
Sbjct: 285 VLFDKLKER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGL 343
Query: 323 IRT--GEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380
+R+ + L M+ G P +Y ++I+ F + + ++++ ++G PD
Sbjct: 344 LRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 403
Query: 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKA 440
+ YT LI KL+ ++ EM+EK P+ KT YN + L A
Sbjct: 404 AVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKT--------YN------ALIKLMA 449
Query: 441 HQPQSGQNTRVISK 454
+Q TR+ +K
Sbjct: 450 NQKMPEHGTRIYNK 463
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 210/400 (52%), Gaps = 14/400 (3%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M ++E + +S +L+ EVL R+ + AF FF WA ++ G+AH +R Y++M++IL K
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
R+F+T ++++EM G G L+T +T I ++ + A + +A+ F K++KF +G
Sbjct: 207 TRQFETMVSVLEEM--GTKG--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIG 262
Query: 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC---NIIGSSREAER 194
+E LL +L R K ++A+ L K+ F N ++ ++LNGWC N+I EA R
Sbjct: 263 VETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI----EAAR 318
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
+W +M G+ D+V+ + ++ ++ ++LF MK G + + Y +I
Sbjct: 319 IWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFC 378
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
K ++ AI M + G+ P+ Y LI +KLD + EM ++G P +
Sbjct: 379 KQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGK 438
Query: 315 TYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
TY+A + ++ + E + M + +P+ T+ M++K + R + VW+E+
Sbjct: 439 TYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEM 498
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ G PD +SYT LI L GK EA +Y EM +K +
Sbjct: 499 IKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGM 538
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 173/374 (46%), Gaps = 40/374 (10%)
Query: 95 ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE-----DFQGLLSALC 149
ETG S V T + R C V I+ +A R AV E ++ L
Sbjct: 115 ETGVSCVESSTNPEEVERVCKV------IDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 168
Query: 150 RYKNVQDAEHLMFC---NKDVFPFNTKSFNIILNGWCNIIGSSREAE---RVWMEMSQRG 203
R+++ + FC + F +++++N +++ I+ +R+ E V EM +G
Sbjct: 169 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMS----ILAKTRQFETMVSVLEEMGTKG 224
Query: 204 ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263
+ + +F+ + ++ A+ K + +F+ MK+ + + N ++ +L + +L K+A
Sbjct: 225 L-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 283
Query: 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-I 322
L ++E+ PN++TY L+ C+ R L EA + +++M+ G+ P I ++ L+ +
Sbjct: 284 VLFDKLKER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGL 342
Query: 323 IRT--GEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380
+R+ + L M+ G P +Y ++I+ F + + ++++ ++G PD
Sbjct: 343 LRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDA 402
Query: 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKA 440
+ YT LI KL+ ++ EM+EK P+ KT YN + L A
Sbjct: 403 AVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKT--------YN------ALIKLMA 448
Query: 441 HQPQSGQNTRVISK 454
+Q TR+ +K
Sbjct: 449 NQKMPEHGTRIYNK 462
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 201/399 (50%), Gaps = 9/399 (2%)
Query: 22 IEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF 81
+++ G++VS E+V +VL+ RN + FF W+ KQ Y HS R YH MI K+R++
Sbjct: 91 LDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQY 150
Query: 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141
W LI+ MR + ++ +T I++R+Y V AI AF +++ + F
Sbjct: 151 KLMWDLINAMRKKK----MLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAF 206
Query: 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201
GLLSALC+ KNV+ A+ + +D F ++K+++I+L GW + A V+ EM
Sbjct: 207 NGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPK-AREVFREMID 265
Query: 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261
G D+V++S ++ KA + + L + M + +Y+ ++H +++
Sbjct: 266 AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE 325
Query: 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL- 320
A+ ME G+ +V +NSLI CKA ++ + EM +G++P ++ + L
Sbjct: 326 AVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILR 385
Query: 321 DIIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP 378
+I GE E F + M K+ C+P DTY M+IK F ++ KVW + + G P
Sbjct: 386 HLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFP 444
Query: 379 DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+++ LI+ L ++A EM E + P T
Sbjct: 445 SMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVT 483
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 213/431 (49%), Gaps = 17/431 (3%)
Query: 6 DILREFSHKRSEMRNKIEEC-------GIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQ 58
D++ E S S+ RN ++ +VSS LV +VL +N A FFLWA +
Sbjct: 36 DLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRI 95
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD 118
+AHS YH ++ ILG ++F W + E R E ++ + I+ R Y +
Sbjct: 96 PDFAHSLESYHILVEILGSSKQFALLWDFLIEAR--EYNYFEISSKVFWIVFRAYSRANL 153
Query: 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFN 176
A AF F ++D LL +LC K+V A+ K + P + K+++
Sbjct: 154 PSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVP-SAKTYS 212
Query: 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236
I++ GW I +S A +V+ EM +R D+++++ ++ K+ ++ ++F +M
Sbjct: 213 ILVRGWARIRDAS-GARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGN 271
Query: 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296
+G++ D + IHA V A ++ M+ + PNV T+N +IK LCK K+D+
Sbjct: 272 LGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDD 331
Query: 297 ARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIK 353
A DEM+Q+G +P TY++ + EV LL M + C P TY M++K
Sbjct: 332 AYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLK 391
Query: 354 KFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL-NGKLEEAHQYYMEMKEKQLL 412
R +F ++W +SE P ++YT +IH L GKLEEA +Y+ M ++ +
Sbjct: 392 LLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIP 451
Query: 413 PEPKTDELLQD 423
P T E+L++
Sbjct: 452 PYSTTVEMLRN 462
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/423 (29%), Positives = 223/423 (52%), Gaps = 31/423 (7%)
Query: 18 MRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
M + ++ GI ++ L+ + L +R++ + A +FF + + + ++ +I ILG+
Sbjct: 58 MESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGR 117
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF------YAYKR 131
VR+FD LI EM +T P +T LIL++R A +A+ AF +R
Sbjct: 118 VRQFDVVRQLIVEM--DQTSP-----ETFLILVKRLIAAGLTRQAVRAFDDAPCFLENRR 170
Query: 132 FKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191
F+ +F LL LC+Y + A + K+ F + K + I++ GWC +
Sbjct: 171 FRLV----EFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKL-RRIDM 225
Query: 192 AERVWMEMSQRGICYDVVSFSCIIS--CYSKA--------RNLHKVLRLFDQMKRMGIEC 241
AE+ +EM + GI +VV+++ +++ C + + RN+ ++FD+M++ GIE
Sbjct: 226 AEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEP 285
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
D ++ V+H ++ + + MK M+ KG++P + TY S++K LC +L+EA +
Sbjct: 286 DVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELL 345
Query: 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG---CQPTNDTYIMLIKKFSRW 358
+ M++ GISP+ TY+ F + ++ G + RKM C+P+ TY +L+ F
Sbjct: 346 ETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINL 405
Query: 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTD 418
+ V ++W+++ + GPD SYT+L+H L K +EA Y++EM E+ LP+ T
Sbjct: 406 GKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFLPQKLTF 465
Query: 419 ELL 421
E L
Sbjct: 466 ETL 468
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 58/306 (18%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
++ + + Y +IA K+R+ D A + EM P++VT LL I R ++
Sbjct: 199 RKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASL 258
Query: 117 H-------DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQ---DAEHLMFCNKD 166
H +V A F ++ + F +L R + D LM K
Sbjct: 259 HPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKA-KG 317
Query: 167 VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCI------------ 214
+ P +++ ++ C+ G EAE + M + GI +++C
Sbjct: 318 ISP-TIETYTSVVKCLCSC-GRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANG 375
Query: 215 -ISCYSKARN----------------------LHKVLRLFDQMKRMGIECDRKVYNAVIH 251
++ Y K +N + V ++D +K D Y +++H
Sbjct: 376 AMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVH 435
Query: 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA----------RKLDEARQAF 301
L K+A M E+G P +T+ +L K L ++ +KLDE F
Sbjct: 436 GLCSKEKWKEACGYFVEMIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLDEESITF 495
Query: 302 DEMLQR 307
QR
Sbjct: 496 GSEFQR 501
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 193/402 (48%), Gaps = 7/402 (1%)
Query: 15 RSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAI 74
+S ++ + GI +S ++V++VL+ EA TFF WA ++ G Y ++
Sbjct: 101 KSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRA 160
Query: 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF 134
LG+ + F ++ M P L + L I + + VH V RAI F + F
Sbjct: 161 LGRRKLFSFMMDVLKGMVCEGVNPDL---ECLTIAMDSFVRVHYVRRAIELFEESESFGV 217
Query: 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194
E F LL LC +V A+ + K PF++ S+NI+++GW + G E E+
Sbjct: 218 KCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKL-GEVEEMEK 276
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
V EM + G D +S+S +I + ++ + +FD +K G D VYNA+I
Sbjct: 277 VLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFI 336
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
R +++ + M ++ PN+ TY+ L+ L K RK+ +A + F+EML RG+ PT
Sbjct: 337 SARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTG 396
Query: 315 TYHAFLDIIRT---GEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
+FL + + + + RK GC+ + Y +L+K+ SR+ + G + VW+E+
Sbjct: 397 LVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEM 456
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
E+G D Y ++ L + G LE A E K P
Sbjct: 457 QESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCP 498
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 12/224 (5%)
Query: 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260
+ G+ DV S+S I+ + + ++ + M G+ D + + + + V+
Sbjct: 144 EPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVR 203
Query: 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL 320
AI L + E GV + ++N+L++ LC+ + A+ F+ ++G P +
Sbjct: 204 RAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNA--KKGNIPFDSCSY--- 258
Query: 321 DIIRTGEEVFGLLESMRKM-------GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373
+I+ +G G +E M K+ G P +Y LI+ R + + ++++ I
Sbjct: 259 NIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKH 318
Query: 374 NGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
GN PD + Y A+I +E+ +YY M +++ P +T
Sbjct: 319 KGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLET 362
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/246 (18%), Positives = 99/246 (40%), Gaps = 7/246 (2%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+SG+ Y +I LG+ + + + + D ++ P + I + +
Sbjct: 283 ESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAM---ICNFISAR 339
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D ++ + + +E + L+S L + + V DA + ++ V P T
Sbjct: 340 DFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLP-TTGLV 398
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
L C+ G A ++ + + G ++ ++ S+ +L ++D+M+
Sbjct: 399 TSFLKPLCSY-GPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQ 457
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
G D +VY ++ L +++A+ +M+ KG PN Y+ L L + K +
Sbjct: 458 ESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTE 517
Query: 296 EARQAF 301
A + F
Sbjct: 518 LAYKLF 523
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/440 (26%), Positives = 209/440 (47%), Gaps = 11/440 (2%)
Query: 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAH 63
+ D L + ++ ++ +C + V+ LV +VL N W A+ FF+WA Q+GY H
Sbjct: 105 VCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVH 164
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S Y+ M+ +LGK R FD W L++EM E LVT T+ ++RR +A+
Sbjct: 165 SGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEES-KLVTLDTMSKVMRRLAKSGKYNKAV 223
Query: 124 NAFYAY-KRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182
+AF K + L+ AL + +++ A + D + ++FNI+++G+
Sbjct: 224 DAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGF 283
Query: 183 CNIIGSSREAERVWME-MSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241
C + R M+ M DVV+++ + Y K + +V + ++M+ G
Sbjct: 284 CK--ARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNP 341
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
+ Y V+H+L K + V +A+ + + M+E G P+ Y+SLI L K + +A + F
Sbjct: 342 NVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIF 401
Query: 302 DEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMRK---MGCQPTNDTYIMLIKKF 355
++M +G+ + Y+ + E LL+ M C P +TY L+K
Sbjct: 402 EDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMC 461
Query: 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415
++ + + + + +N D S+Y LI L ++GK+EEA ++ E K ++P
Sbjct: 462 CHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRD 521
Query: 416 KTDELLQDWSYNKQFVERQI 435
T ++L D K E ++
Sbjct: 522 STCKMLVDELEKKNMAEAKL 541
>sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310,
mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2
SV=1
Length = 602
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/464 (27%), Positives = 226/464 (48%), Gaps = 22/464 (4%)
Query: 16 SEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL 75
S + + ++E GI+ S ELV + + + + F WA + G+ S + +++ L
Sbjct: 86 SSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSL 145
Query: 76 GKVRKFDTAWALI-DEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF-- 132
K R+F+ AW+L+ D +R E G +LV+ T ++LIRRY V +AI AF + +
Sbjct: 146 CKAREFEIAWSLVFDRVRSDE-GSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEP 204
Query: 133 --KFAVGIEDFQGLLSALCRYKNVQDAEHLM-----FCNKDVFPFNTKSFNIILNGWCNI 185
K A + + LL ALC+ +V++A + + + P + + FNI+LNGW
Sbjct: 205 VCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVP-SVRIFNILLNGWFRS 263
Query: 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
++AE++W EM + VV++ +I Y + R + + + ++MK +E + V
Sbjct: 264 -RKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMV 322
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
+N +I L + + +A+ +M+ P +VTYNSL+K CKA L A + M+
Sbjct: 323 FNPIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMM 382
Query: 306 QRGISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
RG+ PT TY+ F EE L + + G P TY +++K +
Sbjct: 383 TRGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLS 442
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422
+V E+ G PD + T LIH L LEEA + + + ++P+ T +++
Sbjct: 443 LAMQVNKEMKNRGIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMID 502
Query: 423 DWSYNKQFVE--RQIASLKAHQPQSGQ--NT--RVISKKSDQDR 460
+ +K + ++++SL + P S + NT + D+DR
Sbjct: 503 NGLRSKGMSDMAKRLSSLMSSLPHSKKLPNTYREAVDAPPDKDR 546
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 184/391 (47%), Gaps = 11/391 (2%)
Query: 30 SSELVSEVLSWVRNDWEAAFTFF-LWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALI 88
+ LV+ VL + N A FF Y H + I I ++ T W+LI
Sbjct: 55 TPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLI 114
Query: 89 DEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSAL 148
MR GPS +T I+ RY + +A+ F + F +L L
Sbjct: 115 HRMRSLRIGPS---PKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 171
Query: 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV 208
C+ K V+ A L + F +T ++N+ILNGWC +I + +A V EM +RGI ++
Sbjct: 172 CKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWC-LIKRTPKALEVLKEMVERGINPNL 230
Query: 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268
+++ ++ + +A + F +MK+ E D Y V+H +K A ++
Sbjct: 231 TTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDE 290
Query: 269 MEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTGE 327
M +GV P+V TYN++I+ LCK ++ A F+EM++RG P + TY+ + + GE
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350
Query: 328 EVFG--LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTA 385
G L++ M GC+P TY M+I+ +S + ++ ++ P+ +Y
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 410
Query: 386 LIHALFLNGKLEE---AHQYYMEMKEKQLLP 413
LI +F+ + E+ A + +EM E+ +P
Sbjct: 411 LISGMFVRKRSEDMVVAGKLLLEMVERGFIP 441
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 4/215 (1%)
Query: 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269
+F+ + Y+ A K ++LF M G D +N ++ L K + V+ A L +++
Sbjct: 128 TFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRAL 187
Query: 270 EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE- 327
+ + + VTYN ++ C ++ +A + EM++RGI+P + TY+ L R G+
Sbjct: 188 RGR-FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQI 246
Query: 328 -EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTAL 386
+ M+K C+ TY ++ F + V++E+ G P ++Y A+
Sbjct: 247 RHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAM 306
Query: 387 IHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421
I L +E A + EM + P T +L
Sbjct: 307 IQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVL 341
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 105/225 (46%), Gaps = 4/225 (1%)
Query: 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255
+++ R +D SF I ++ V L +M+ + I K + V A
Sbjct: 79 FLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYAS 138
Query: 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRT 315
A+ L +M E G ++ ++N+++ LCK++++++A + F + R T+ T
Sbjct: 139 AGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTV-T 197
Query: 316 YHAFLD---IIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEIS 372
Y+ L+ +I+ + +L+ M + G P TY ++K F R Q + ++ + E+
Sbjct: 198 YNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMK 257
Query: 373 ENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+ D +YT ++H + G+++ A + EM + +LP T
Sbjct: 258 KRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVAT 302
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 206/414 (49%), Gaps = 23/414 (5%)
Query: 12 SHKRSEMRNKIEECGIKVSSELVSEVLSWVR---NDWEAAFTFFLWAGKQSGYAHSTREY 68
S+ + E++ + GI +S +L+ VL VR + F+ +A G+ HS+
Sbjct: 52 SNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSL 111
Query: 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYA 128
TM+ ILG+ RKFD W L+ E + + SL++ +T+ +++ R + V + + +F+
Sbjct: 112 DTMLYILGRNRKFDQIWELLIETKRKDR--SLISPRTMQVVLGRVAKLCSVRQTVESFWK 169
Query: 129 YKRFKFAVGIEDF------QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182
+KR + DF LL LC+ K++ DA ++ K F + ++FNI+L+GW
Sbjct: 170 FKRL-----VPDFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGW 224
Query: 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242
SS EAE + EM +G+ DVV+++ +I Y K R + K +L D+M+ D
Sbjct: 225 ----KSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPD 280
Query: 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302
Y VI L A ++K M+E G P+V YN+ I+ C AR+L +A + D
Sbjct: 281 VITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVD 340
Query: 303 EMLQRGISPTIRTYHAFLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
EM+++G+SP TY+ F ++ ++ + L M C P + + LIK F R
Sbjct: 341 EMVKKGLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHE 400
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ ++W ++ G G L+ L K+EEA + +EM EK P
Sbjct: 401 KVDMAMRLWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRP 454
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIEC---DRKVYNAVIHALAKGRLVKDAISLM 266
SFS Y RN R FDQ+ + IE DR + + + GR+ K S+
Sbjct: 108 SFSLDTMLYILGRN-----RKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAK-LCSVR 161
Query: 267 KSMEE----KGVAPN---VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF 319
+++E K + P+ +N+L++ LC+ + + +AR + L+ P ++T++
Sbjct: 162 QTVESFWKFKRLVPDFFDTACFNALLRTLCQEKSMTDARNVYHS-LKHQFQPDLQTFNIL 220
Query: 320 LDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD 379
L ++ EE E M+ G +P TY LI + + R+ +K+ +++ E PD
Sbjct: 221 LSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPD 280
Query: 380 RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
+YT +I L L G+ ++A + EMKE P+
Sbjct: 281 VITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPD 315
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 17/255 (6%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL---LILIRRY 113
K G Y+++I + K R+ + A+ LID+MR E P ++T T+ L LI +
Sbjct: 238 KGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQP 297
Query: 114 CAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFN 171
+V + + + Y + + + C + + DA+ L+ K + P N
Sbjct: 298 DKAREVLKEMKEYGCYP------DVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSP-N 350
Query: 172 TKSFNIILN--GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLR 229
++N+ N +G S E +++ M + S +I + + + +R
Sbjct: 351 ATTYNLFFRVLSLANDLGRSWE---LYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMR 407
Query: 230 LFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289
L++ M G V + ++ L V++A + M EKG P+ V++ + +
Sbjct: 408 LWEDMVVKGFGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLME 467
Query: 290 KARKLDEARQAFDEM 304
A K DE +M
Sbjct: 468 LANKHDEVNNLIQKM 482
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 159 bits (401), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 211/467 (45%), Gaps = 37/467 (7%)
Query: 17 EMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILG 76
+M ++E + +++ +V ++L ++ + + AF FF WAG Q Y+H Y+ MI IL
Sbjct: 111 DMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILS 170
Query: 77 ----KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132
K ++F ++D M+ ++V LL ++R+YC + + F KR
Sbjct: 171 STKYKNKQFRIVIDMLDYMK--RNNKTVVLVDVLLEILRKYCERYLTH--VQKFAKRKRI 226
Query: 133 KFAVG--IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190
+ I F LL ALC+ V++ E L+ + + +FN++ GWC + +
Sbjct: 227 RVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRV-RDPK 285
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR---KVYN 247
+A ++ EM + G + ++ I + +A + + LFD M G K +
Sbjct: 286 KAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFA 345
Query: 248 AVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307
+I ALAK ++ L+ M G P+V TY +I+ +C A K+DEA + DEM +
Sbjct: 346 LMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNK 405
Query: 308 GISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNV 364
G P I TY+ FL ++ R +E L M + C P+ TY MLI F
Sbjct: 406 GYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGA 465
Query: 365 FKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL-LPEPKTDELLQD 423
F W E+ + D +Y A+I+ LF + +EA E+ K L LP D L
Sbjct: 466 FNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMR 525
Query: 424 WSYNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRR 470
S ++ +LKA I K S+ ++F RR
Sbjct: 526 LS--------EVGNLKA-----------IHKVSEHMKKFYNHSMARR 553
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 190/403 (47%), Gaps = 15/403 (3%)
Query: 27 IKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWA 86
+ +S LV ++L R+DW +A WA G+ HS+ Y + ILGK +K+D
Sbjct: 83 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142
Query: 87 LIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLS 146
++ MRG + LVT T+ ++RR+ + A+ F F E LL
Sbjct: 143 FVERMRGDK----LVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLD 198
Query: 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWM--EMSQRGI 204
LC+ K V+ A ++ K N +FNI ++GWC ++R E +W EM G
Sbjct: 199 TLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCK---ANRVEEALWTIQEMKGHGF 255
Query: 205 CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264
V+S++ II CY + KV + +M+ G + Y ++ +L + ++A+
Sbjct: 256 RPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALR 315
Query: 265 LMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD-EMLQRGISPTIRTYHAFLDII 323
+ M+ G P+ + YN LI L +A +L+EA + F EM + G+S TY++ + +
Sbjct: 316 VATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMY 375
Query: 324 RTGEEVFGLLESMRKMG----CQPTNDTYIMLIKKFSRWRQFGNVFKVWNE-ISENGNGP 378
+E +E +++M C P TY L++ + V K+ E ++++
Sbjct: 376 CHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSL 435
Query: 379 DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421
D S+YT LI L E A+ + EM + + P +T LL
Sbjct: 436 DESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLL 478
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 45/320 (14%)
Query: 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTK 103
+WE A F G + G +T + ++ L K ++ + A ++ +++ T +
Sbjct: 170 EWEEAVGIFDRLG-EFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNA---- 224
Query: 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR-YKNVQDAEHLMF 162
T I I +C + V A+ K F + + ++ C+ ++ ++ E L
Sbjct: 225 HTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSE 284
Query: 163 CNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222
+ P N+ ++ I++ N EA RV M + G D + ++C+I ++A
Sbjct: 285 MEANGSPPNSITYTTIMSSL-NAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAG 343
Query: 223 NLHKVLRLFD-QMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PNVVT 280
L + R+F +M +G+ + YN++I AI L+K ME + P+V T
Sbjct: 344 RLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHT 403
Query: 281 YNSL------------------------------------IKPLCKARKLDEARQAFDEM 304
Y L I+ LC+A + A F+EM
Sbjct: 404 YQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEM 463
Query: 305 LQRGISPTIRTYHAFLDIIR 324
+ + I+P RT L+ ++
Sbjct: 464 ISQDITPRHRTCLLLLEEVK 483
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 177/358 (49%), Gaps = 9/358 (2%)
Query: 81 FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED 140
D A L D+M P++VT TL I YC + + + +
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTL---IDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277
Query: 141 FQGLLSALCRYKNVQDAEHLMF-CNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199
+ +++ LCR +++ ++ N+ + + ++N ++ G+C G+ +A + EM
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE-GNFHQALVMHAEM 336
Query: 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259
+ G+ V++++ +I KA N+++ + DQM+ G+ + + Y ++ ++ +
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396
Query: 260 KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF 319
+A +++ M + G +P+VVTYN+LI C K+++A ++M ++G+SP + +Y
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456
Query: 320 LDIIRTGEEVFGLLESMRKM---GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN 376
L +V L R+M G +P TY LI+ F R+ ++ E+ G
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516
Query: 377 GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQ 434
PD +YTALI+A + G LE+A Q + EM EK +LP+ T +L + NKQ R+
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN-GLNKQSRTRE 573
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 172/383 (44%), Gaps = 25/383 (6%)
Query: 50 TFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109
+F L + GY+ Y+T+I K F A + EM PS++T +L
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL--- 351
Query: 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF-CNKDVF 168
I C ++ RA+ + + L+ + + +A ++ N + F
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411
Query: 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVL 228
+ ++N ++NG C + G +A V +M ++G+ DVVS+S ++S + ++ ++ + L
Sbjct: 412 SPSVVTYNALINGHC-VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470
Query: 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPL 288
R+ +M GI+ D Y+++I + R K+A L + M G+ P+ TY +LI
Sbjct: 471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530
Query: 289 CKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII----RTGEEVFGLLESMRKMGCQPT 344
C L++A Q +EM+++G+ P + TY ++ + RT E LL+ + P+
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV-PS 589
Query: 345 NDTY---------------IMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHA 389
+ TY + LIK F +V+ + + PD ++Y +IH
Sbjct: 590 DVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHG 649
Query: 390 LFLNGKLEEAHQYYMEMKEKQLL 412
G + +A+ Y EM + L
Sbjct: 650 HCRAGDIRKAYTLYKEMVKSGFL 672
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/399 (22%), Positives = 169/399 (42%), Gaps = 54/399 (13%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLL-------------------- 107
Y+T+I K+RK D + L+ M P+L++ ++
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 108 ------------ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQ 155
LI+ YC + +A+ R + + L+ ++C+ N+
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMN 362
Query: 156 DAEHLM--FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213
A + + + P N +++ +++G+ G EA RV EM+ G VV+++
Sbjct: 363 RAMEFLDQMRVRGLCP-NERTYTTLVDGFSQK-GYMNEAYRVLREMNDNGFSPSVVTYNA 420
Query: 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273
+I+ + + + + + MK G+ D Y+ V+ + V +A+ + + M EKG
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD---IIRTGEEVF 330
+ P+ +TY+SLI+ C+ R+ EA ++EML+ G+ P TY A ++ + E+
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540
Query: 331 GLLESMRKMGCQPTNDTYIMLI---KKFSRWRQFGNVF------------KVWNEISENG 375
L M + G P TY +LI K SR R+ + ++ + EN
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENC 600
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
+ + S +LI + G + EA Q + M K P+
Sbjct: 601 SNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 12/285 (4%)
Query: 151 YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVS 210
+K++Q+ L + VF KS++ + ++I +A + G V+S
Sbjct: 120 FKSLQETYDLCYSTSSVFDLVVKSYSRL-----SLID---KALSIVHLAQAHGFMPGVLS 171
Query: 211 FSCIISCYSKA-RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269
++ ++ ++ RN+ +F +M + + YN +I + A++L M
Sbjct: 172 YNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM 231
Query: 270 EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTG-- 326
E KG PNVVTYN+LI CK RK+D+ + M +G+ P + +Y+ ++ + R G
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM 291
Query: 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTAL 386
+EV +L M + G TY LIK + + F + E+ +G P +YT+L
Sbjct: 292 KEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351
Query: 387 IHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFV 431
IH++ G + A ++ +M+ + L P +T L D K ++
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYM 396
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 126/306 (41%), Gaps = 69/306 (22%)
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD 118
+G++ S Y+ +I K + A A++++M+ P +V+ T+L +C +D
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL---SGFCRSYD 465
Query: 119 VGRAINAFYAYKRFKFAVGIE----DFQGLLSALCRYKNVQDA----EHLMFCNKDVFPF 170
V A+ KR GI+ + L+ C + ++A E ++ + P
Sbjct: 466 VDEALRV----KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML---RVGLPP 518
Query: 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHK---- 226
+ ++ ++N +C + G +A ++ EM ++G+ DVV++S +I+ +K +
Sbjct: 519 DEFTYTALINAYC-MEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577
Query: 227 VLRLFDQ--------------------------------MKRMGIECDR----------- 243
+L+LF + MK M E D+
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK 637
Query: 244 ---KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
YN +IH + ++ A +L K M + G + VT +L+K L K K++E
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSV 697
Query: 301 FDEMLQ 306
+L+
Sbjct: 698 IVHVLR 703
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 186/400 (46%), Gaps = 45/400 (11%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY + ++T+I L + + A AL+D M P LVT I++ C
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG---IVVNGLCKRG 235
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D+ A++ ++ K G+ + ++ ALC YKNV DA +L NK + P N ++
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP-NVVTY 294
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
N ++ CN G +A R+ +M +R I +VV+FS +I + K L + +L+D+M
Sbjct: 295 NSLIRCLCNY-GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 353
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
+ I+ D Y+++I+ + +A + + M K PNVVTYN+LIK CKA+++D
Sbjct: 354 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVD 413
Query: 296 EARQAFDEMLQR-----------------------------------GISPTIRTYHAFL 320
E + F EM QR G+ P I TY L
Sbjct: 414 EGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL 473
Query: 321 D-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
D + G E + E +++ +P TY ++I+ + + + + ++ +S G
Sbjct: 474 DGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
P+ +YT ++ G EEA + EMKE+ LP+ T
Sbjct: 534 PNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/425 (26%), Positives = 185/425 (43%), Gaps = 57/425 (13%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E+ +++ + K+ KFD +L ++M+ +L T ILI +C + A+
Sbjct: 80 SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS---ILINCFCRRSQLSLAL 136
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL------MFCNKDVFPFNTKSFNI 177
+ + I LL+ C + DA L M D F FNT
Sbjct: 137 AVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNT----- 191
Query: 178 ILNGWCNIIGSSREAERVWM--EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+++G + +R +E V + M +G D+V++ +++ K ++ L L +M+
Sbjct: 192 LIHG---LFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKME 248
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC------ 289
+ IE +YN +I AL + V DA++L M+ KG+ PNVVTYNSLI+ LC
Sbjct: 249 QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 290 -----------------------------KARKLDEARQAFDEMLQRGISPTIRTYHAFL 320
K KL EA + +DEM++R I P I TY + +
Sbjct: 309 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 368
Query: 321 D---IIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
+ + +E + E M C P TY LIK F + ++ +++ E+S+ G
Sbjct: 369 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIAS 437
+ +YT LIH F + + A + +M +LP+ T +L D N VE +
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVV 488
Query: 438 LKAHQ 442
+ Q
Sbjct: 489 FEYLQ 493
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
+ DA++L M + P++V ++ L+ + K K D ++M GIS + TY
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
++ ++ +L M K+G +P T L+ F + + + ++ E G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD ++ LIH LF + + EA M K P+ T
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVT 223
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 145/277 (52%), Gaps = 8/277 (2%)
Query: 144 LLSALCRYKNVQDAEHLMFCNKD----VFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199
LL LC Q+A L+ D P + S+ ++NG+ G S +A + EM
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKE-GDSDKAYSTYHEM 222
Query: 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259
RGI DVV+++ II+ KA+ + K + + + M + G+ D YN+++H
Sbjct: 223 LDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP 282
Query: 260 KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF 319
K+AI +K M GV P+VVTY+ L+ LCK + EAR+ FD M +RG+ P I TY
Sbjct: 283 KEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTL 342
Query: 320 LDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN 376
L T E+ GLL+ M + G P + + +LI +++ + V++++ + G
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402
Query: 377 GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
P+ +Y A+I L +G++E+A Y+ +M ++ L P
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 146/320 (45%), Gaps = 40/320 (12%)
Query: 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDA----EHLMFC 163
ILI Y V +A+ F ++ + ++ LC+ V+DA E ++
Sbjct: 376 ILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI-- 433
Query: 164 NKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223
++ + P N +N +++G C R AE + +EM RGIC + + F+ II + K
Sbjct: 434 DEGLSPGNI-VYNSLIHGLCTCNKWER-AEELILEMLDRGICLNTIFFNSIIDSHCKEGR 491
Query: 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS 283
+ + +LF+ M R+G++ + YN +I+ + +A+ L+ M G+ PN VTY++
Sbjct: 492 VIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 551
Query: 284 LIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQP 343
LI CK ++++A F EM G+SP I TY+ L GL ++ R +
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ---------GLFQTRRTAAAK- 601
Query: 344 TNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403
+++ I+E+G + S+Y ++H L N ++A Q +
Sbjct: 602 ----------------------ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMF 639
Query: 404 MEMKEKQLLPEPKTDELLQD 423
+ L E +T ++ D
Sbjct: 640 QNLCLMDLKLEARTFNIMID 659
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 169/400 (42%), Gaps = 78/400 (19%)
Query: 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151
RGG + P +V+ T+ I + D +A + ++ + + +++ALC+
Sbjct: 188 RGGGSPPDVVSYTTV---INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKA 244
Query: 152 KNVQDAEHLM--FCNKDVFPFNTKSFNIILNGWC----------------------NII- 186
+ + A ++ V P + ++N IL+G+C +++
Sbjct: 245 QAMDKAMEVLNTMVKNGVMP-DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVT 303
Query: 187 -----------GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
G EA +++ M++RG+ ++ ++ ++ Y+ L ++ L D M
Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
R GI D V++ +I A AK V A+ + M ++G+ PN VTY ++I LCK+ +++
Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDIIRT------GEEVF------------------- 330
+A F++M+ G+SP Y++ + + T EE+
Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSII 483
Query: 331 -------------GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
L E M ++G +P TY LI + + K+ + + G
Sbjct: 484 DSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK 543
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
P+ +Y+ LI+ ++E+A + EM+ + P+ T
Sbjct: 544 PNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIIT 583
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 10/381 (2%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
+Q G + Y +I IL K + + A ++M P + +L I C
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL---IHGLCTC 454
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL--MFCNKDVFPFNTKS 174
+ RA + F ++ + C+ V ++E L + V P N +
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP-NVIT 513
Query: 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234
+N ++NG+C + G EA ++ M G+ + V++S +I+ Y K + L LF +M
Sbjct: 514 YNTLINGYC-LAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEM 572
Query: 235 KRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294
+ G+ D YN ++ L + R A L + E G + TYN ++ LCK +
Sbjct: 573 ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLT 632
Query: 295 DEARQAFDEMLQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIML 351
D+A Q F + + RT++ +D +++ G +E L + G P TY ++
Sbjct: 633 DDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692
Query: 352 IKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ + +++ + +NG D ++ L G++ A Y + EK
Sbjct: 693 AENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHF 752
Query: 412 LPEPKTDELLQDWSYNKQFVE 432
E T L D ++ E
Sbjct: 753 SLEASTASLFIDLLSGGKYQE 773
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 7/225 (3%)
Query: 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL- 265
D+ ++ +I C +A L + + G D + ++ L + DA+ +
Sbjct: 86 DLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 145
Query: 266 MKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR---GISPTIRTYHAFLD- 321
++ M E G PNV +YN L+K LC + EA + M G P + +Y ++
Sbjct: 146 LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 322 IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD 379
+ G+ + + M G P TY +I + + +V N + +NG PD
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265
Query: 380 RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424
+Y +++H +G+ +EA + +M+ + P+ T LL D+
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDY 310
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 230 LFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG---VAPNVVTYNSLIK 286
+FD++ R G N + +A+ A+S M G V P++ TY LI
Sbjct: 37 VFDELLRRGRGASIYGLNRALADVARDSPAA-AVSRYNRMARAGADEVTPDLCTYGILIG 95
Query: 287 PLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII----RTGEEVFGLLESMRKMGCQ 342
C+A +LD A ++++G + L + RT + + +L M ++GC
Sbjct: 96 CCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCI 155
Query: 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN---GNGPDRSSYTALIHALFLNGKLEEA 399
P +Y +L+K + ++ + ++++ G+ PD SYT +I+ F G ++A
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 400 HQYYMEMKEKQLLPEPKT 417
+ Y EM ++ +LP+ T
Sbjct: 216 YSTYHEMLDRGILPDVVT 233
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 189/411 (45%), Gaps = 50/411 (12%)
Query: 48 AFTFFLWAGKQSGYAH-STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106
+ FF WA + Y H S Y+ MI + GKVR+FD AW LID M+ S+ +T
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISI---ETF 189
Query: 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED---FQGLLSALCRYKNVQDAEHLMFC 163
ILIRRY G A A + + R + + D F ++S L R + +A+
Sbjct: 190 TILIRRYVR---AGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDS 246
Query: 164 NKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC------ 217
KD F + + ++ GWC G EAE+V+ EM GI +V ++S +I
Sbjct: 247 LKDRFEPDVIVYTNLVRGWCR-AGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQ 305
Query: 218 -----------------------------YSKARNLHKVLRLFDQMKRMGIECDRKVYNA 248
+ KA KVL++++QMK++G E D YN
Sbjct: 306 ISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNF 365
Query: 249 VIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308
+I A + +++A+ ++ +M +K N T+N++ + + K R ++ A + + +M++
Sbjct: 366 LIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK 425
Query: 309 ISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365
P TY+ + + ++ + V + + M +P +TY +L+ F + N +
Sbjct: 426 CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAY 485
Query: 366 KVWNE-ISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415
K++ E + E P S Y ++ L G+L++ + +M +K L+ P
Sbjct: 486 KLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVARP 536
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 5/252 (1%)
Query: 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFD 232
++F I++ + G + EA + M G D ++FS +IS S+ R + FD
Sbjct: 187 ETFTILIRRYVRA-GLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD 245
Query: 233 QMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292
+K E D VY ++ + + +A + K M+ G+ PNV TY+ +I LC+
Sbjct: 246 SLKD-RFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCG 304
Query: 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDI-IRTG--EEVFGLLESMRKMGCQPTNDTYI 349
++ A F +ML G +P T++ + + ++ G E+V + M+K+GC+P TY
Sbjct: 305 QISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYN 364
Query: 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409
LI+ R N KV N + + + S++ + + + AH+ Y +M E
Sbjct: 365 FLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEA 424
Query: 410 QLLPEPKTDELL 421
+ P T +L
Sbjct: 425 KCEPNTVTYNIL 436
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 12/255 (4%)
Query: 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273
+I K R L D MK +E + + +I + L +A+ ME+ G
Sbjct: 157 MIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYG 216
Query: 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTGE--EVF 330
P+ + ++ +I L + R+ EA+ FD + R P + Y + R GE E
Sbjct: 217 CVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAGEISEAE 275
Query: 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHAL 390
+ + M+ G +P TY ++I R Q V+ ++ ++G P+ ++ L+
Sbjct: 276 KVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVH 335
Query: 391 FLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASL------KAHQPQ 444
G+ E+ Q Y +MK+ P+ T L + + +E + L K
Sbjct: 336 VKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNA 395
Query: 445 SGQNT--RVISKKSD 457
S NT R I KK D
Sbjct: 396 STFNTIFRYIEKKRD 410
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 187/416 (44%), Gaps = 53/416 (12%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E++ +++ + K++KFD +L ++M+ +L T ILI +C + A+
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN---ILINCFCRRSQISLAL 65
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL------MFCNKDVFPFNTKSFNI 177
+ + I LL+ C K + DA L M D F T +
Sbjct: 66 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 125
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
L+ + EA + M QRG ++V++ +++ K ++ L ++M+
Sbjct: 126 FLHN------KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
IE D ++N +I +L K R V DA++L K ME KG+ PNVVTY+SLI LC + +A
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239
Query: 298 RQAFDEMLQRGISPTIRTYHAFLD-IIRTGE------------------EVFG------- 331
Q +M+++ I+P + T++A +D ++ G+ ++F
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299
Query: 332 ------------LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD 379
+ E M C P DTY LIK F + ++ + +++ E+S G D
Sbjct: 300 FCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 359
Query: 380 RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQI 435
+YT LI LF +G + A + + +M + P+ T +L D N +E+ +
Sbjct: 360 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 172/419 (41%), Gaps = 49/419 (11%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
Q G + Y ++ L K D A+ L+++M + +V T+ I C
Sbjct: 143 QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI---IDSLCKYR 199
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
V A+N F + + + L+S LC Y DA L+ K + P N +F
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP-NLVTF 258
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
N +++ + G EAE++ +M +R I D+ +++ +I+ + L K ++F+ M
Sbjct: 259 NALIDAFVKE-GKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
D YN +I K + V+D L + M +G+ + VTY +LI+ L D
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 377
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE-----EVFG----------------LL 333
A++ F +M+ G+ P I TY LD + G+ EVF ++
Sbjct: 378 NAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMI 437
Query: 334 ESMRKMG----------------CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
E M K G +P TY +I R + + ++ E+G
Sbjct: 438 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 497
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT----DELLQDWSYNKQFVE 432
PD +Y LI A +G + + EM+ + + + T +L D +K F++
Sbjct: 498 PDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLD 556
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 163/356 (45%), Gaps = 39/356 (10%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T+I L K A AL+D M P+LVT +++ C
Sbjct: 108 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG---VVVNGLCKRG 164
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D+ A N + K + F ++ +LC+Y++V DA +L K + P N ++
Sbjct: 165 DIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP-NVVTY 223
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+ +++ C+ G +A ++ +M ++ I ++V+F+ +I + K + +L D M
Sbjct: 224 SSLISCLCSY-GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI 282
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
+ I+ D YN++I+ + A + + M K P++ TYN+LIK CK+++++
Sbjct: 283 KRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVE 342
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKF 355
+ + F EM RG+ G+ V TY LI+
Sbjct: 343 DGTELFREMSHRGL---------------VGDTV-----------------TYTTLIQGL 370
Query: 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
N KV+ ++ +G PD +Y+ L+ L NGKLE+A + + M++ ++
Sbjct: 371 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 276 PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV---FGL 332
P++ +N L+ + K +K D ++M + GIS + TY+ ++ ++ L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL 392
L M K+G +P+ T L+ + ++ + + +++ E G PD ++T LIH LFL
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 393 NGKLEEAHQYYMEMKEKQLLPEPKT 417
+ K EA M ++ P T
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVT 152
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 186/416 (44%), Gaps = 53/416 (12%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E++ +++ + K++KFD +L ++M+ E L T ILI +C + A+
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN---ILINCFCRRSQISLAL 140
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL------MFCNKDVFPFNTKSFNI 177
+ + I LL+ C K + DA L M D F T +
Sbjct: 141 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 200
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
L+ + EA + M QRG ++V++ +++ K + L L ++M+
Sbjct: 201 FLHN------KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAA 254
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
IE D ++N +I +L K R V DA++L K ME KG+ PNVVTY+SLI LC + +A
Sbjct: 255 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 314
Query: 298 RQAFDEMLQRGISPTIRTYHAFLD-IIRTGE------------------EVFG------- 331
Q +M+++ I+P + T++A +D ++ G+ ++F
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 374
Query: 332 ------------LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD 379
+ E M C P TY LIK F + ++ + +++ E+S G D
Sbjct: 375 FCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD 434
Query: 380 RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQI 435
+YT LI LF +G + A + + +M + P+ T +L D N +E+ +
Sbjct: 435 TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 189/417 (45%), Gaps = 22/417 (5%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T+I L K A AL+D M P+LVT +++ C
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG---VVVNGLCKRG 239
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D A+N + K + F ++ +LC+Y++V DA +L K + P N ++
Sbjct: 240 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRP-NVVTY 298
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+ +++ C+ G +A ++ +M ++ I ++V+F+ +I + K + +L+D M
Sbjct: 299 SSLISCLCSY-GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI 357
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
+ I+ D YN++++ + A + + M K P+VVTYN+LIK CK+++++
Sbjct: 358 KRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVE 417
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDII------RTGEEVFGLLESMRKMGCQPTNDTYI 349
+ + F EM RG+ TY + + ++VF + M G P TY
Sbjct: 418 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF---KQMVSDGVPPDIMTYS 474
Query: 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409
+L+ + +V++ + ++ D YT +I + GK+++ + + K
Sbjct: 475 ILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534
Query: 410 QLLPEPKTDELLQDWSYNKQFVERQIASLKAHQ-----PQSGQ-NTRVISKKSDQDR 460
+ P T + +K+ ++ A LK + P SG NT + + D D+
Sbjct: 535 GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDK 591
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 172/419 (41%), Gaps = 49/419 (11%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
Q G + Y ++ L K D A L+++M + +V T+ I C
Sbjct: 218 QRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI---IDSLCKYR 274
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
V A+N F + + + L+S LC Y DA L+ K + P N +F
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINP-NLVTF 333
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
N +++ + G EAE+++ +M +R I D+ +++ +++ + L K ++F+ M
Sbjct: 334 NALIDAFVKE-GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMV 392
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
D YN +I K + V+D L + M +G+ + VTY +LI+ L D
Sbjct: 393 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCD 452
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE-----EVFG----------------LL 333
A++ F +M+ G+ P I TY LD + G+ EVF ++
Sbjct: 453 NAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMI 512
Query: 334 ESMRKMG----------------CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
E M K G +P TY +I R + + ++ E+G
Sbjct: 513 EGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 572
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT----DELLQDWSYNKQFVE 432
P+ +Y LI A +G + + EM+ + + + T +L D +K F++
Sbjct: 573 PNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLD 631
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
+ DAI L M + P++V +N L+ + K +K D ++M + I + TY+
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
++ ++ LL M K+G +P+ T L+ + ++ + + +++ E G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD ++T LIH LFL+ K EA M ++ P T
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 182/412 (44%), Gaps = 45/412 (10%)
Query: 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV 101
R D ++AF F + G + Y +I L R+ D A L +M+ E P
Sbjct: 266 RKDLDSAFKVFNEMPLK-GCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP--- 321
Query: 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161
T +T +LI+ C A+N + I + L+ +LC + A L+
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 162 ---------------------FCNK-------DVFPF--------NTKSFNIILNGWCNI 185
+C + DV NT+++N ++ G+C
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK- 440
Query: 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
+ +A V +M +R + DVV+++ +I ++ N RL M G+ D+
Sbjct: 441 -SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
Y ++I +L K + V++A L S+E+KGV PNVV Y +LI CKA K+DEA ++ML
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 306 QRGISPTIRTYHAFL-DIIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
+ P T++A + + G +E L E M K+G QPT T +LI + + F
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
+ + + ++ +G PD +YT I G+L +A +M+E + P+
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 167/362 (46%), Gaps = 25/362 (6%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y+ M+ K+ + A + ++ P T +L I YC D+ A F
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSL---IMGYCQRKDLDSAFKVFN 277
Query: 128 -----AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILN 180
+R + A + L+ LC + + +A L KD FP +++ +++
Sbjct: 278 EMPLKGCRRNEVA-----YTHLIHGLCVARRIDEAMDLFVKMKDDECFP-TVRTYTVLIK 331
Query: 181 GWCNIIGSSREAERVWM--EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238
C GS R++E + + EM + GI ++ +++ +I K L QM G
Sbjct: 332 SLC---GSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298
+ + YNA+I+ K +++DA+ +++ ME + ++PN TYN LIK CK+ + +A
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAM 447
Query: 299 QAFDEMLQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKF 355
++ML+R + P + TY++ +D R+G + + LL M G P TY +I
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSL 507
Query: 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415
+ ++ +++ + + G P+ YTALI GK++EAH +M K LP
Sbjct: 508 CKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567
Query: 416 KT 417
T
Sbjct: 568 LT 569
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 186/421 (44%), Gaps = 36/421 (8%)
Query: 13 HKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMI 72
HK +++ + +S VS + S + D + A F W + Y HS Y +++
Sbjct: 76 HKSPSLKSMVS----AISPSHVSSLFS-LDLDPKTALNFSHWISQNPRYKHSVYSYASLL 130
Query: 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL-----IRRYCAVHDVGRAINAFY 127
+L + G G +V K LL++ + V D+ R +N
Sbjct: 131 TLL---------------INNGYVG--VVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDE 173
Query: 128 AYK-RFKFAVGIEDFQGLLSALCRYKNVQDAEHL-MFCNKDVFPFNTKSFNIILNGWCNI 185
++ ++K +G + LL++L R+ V + + + M +D N ++N ++NG+C +
Sbjct: 174 RFELKYKLIIGC--YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL 231
Query: 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
G+ EA + ++ + G+ D +++ +I Y + ++L ++F++M G +
Sbjct: 232 -GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
Y +IH L R + +A+ L M++ P V TY LIK LC + + EA EM
Sbjct: 291 YTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME 350
Query: 306 QRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
+ GI P I TY +D + + E+ LL M + G P TY LI + +
Sbjct: 351 ETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIE 410
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422
+ V + P+ +Y LI + + +A +M E+++LP+ T L
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKG-YCKSNVHKAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 423 D 423
D
Sbjct: 470 D 470
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/448 (21%), Positives = 176/448 (39%), Gaps = 101/448 (22%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
+++G + Y +I L KF+ A L+ +M P+++T L I YC
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL---INGYCKR 406
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKS 174
+ A++ + K + + L+ C+ NV A ++ + V P + +
Sbjct: 407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLP-DVVT 464
Query: 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234
+N +++G C G+ A R+ M+ RG+ D +++ +I K++ + + LFD +
Sbjct: 465 YNSLIDGQCRS-GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523
Query: 235 KRMGIECDRKVY-----------------------------------NAVIHAL-AKG-- 256
++ G+ + +Y NA+IH L A G
Sbjct: 524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583
Query: 257 ---------------------------RLVKD-----AISLMKSMEEKGVAPNVVTYNSL 284
RL+KD A S + M G P+ TY +
Sbjct: 584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643
Query: 285 IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL----DIIRTGEEVFGLLESMRKMG 340
I+ C+ +L +A +M + G+SP + TY + + D+ +T F +L+ MR G
Sbjct: 644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTN-FAFDVLKRMRDTG 702
Query: 341 CQPTNDTYIMLIKKF------------------SRWRQFGNVFKVWNEISENGNGPDRSS 382
C+P+ T++ LIK S +F V ++ ++ E+ P+ S
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKS 762
Query: 383 YTALIHALFLNGKLEEAHQYYMEMKEKQ 410
Y LI + G L A + + M+ +
Sbjct: 763 YEKLILGICEVGNLRVAEKVFDHMQRNE 790
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 125/320 (39%), Gaps = 37/320 (11%)
Query: 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTK 103
D++ A++ F SG Y T I + + A ++ +MR P L T
Sbjct: 617 DFDHAYSRF-QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR------YKNVQDA 157
+L I+ Y D+G+ AF KR + G E Q +L + Y + +
Sbjct: 676 SSL---IKGY---GDLGQTNFAFDVLKRMR-DTGCEPSQHTFLSLIKHLLEMKYGKQKGS 728
Query: 158 EHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC 217
E + ++ F+T + +M + + + S+ +I
Sbjct: 729 EPELCAMSNMMEFDT-------------------VVELLEKMVEHSVTPNAKSYEKLILG 769
Query: 218 YSKARNLHKVLRLFDQMKRM-GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276
+ NL ++FD M+R GI V+NA++ K + +A ++ M G P
Sbjct: 770 ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLP 829
Query: 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII-RTG--EEVFGLL 333
+ + LI L K + + F +LQ G + +D + + G E + L
Sbjct: 830 QLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELF 889
Query: 334 ESMRKMGCQPTNDTYIMLIK 353
M K GC+ ++ TY +LI+
Sbjct: 890 NVMEKNGCKFSSQTYSLLIE 909
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME-EKGVAPNVVTYNSLI 285
V+ L ++M + + K Y +I + + ++ A + M+ +G++P+ + +N+L+
Sbjct: 744 VVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALL 803
Query: 286 KPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTGEEVFG--LLESMRKMGCQ 342
CK +K +EA + D+M+ G P + + + + + GE+ G + +++ + G
Sbjct: 804 SCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYY 863
Query: 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHA 389
+ ++I + ++++N + +NG +Y+ LI
Sbjct: 864 EDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 182/395 (46%), Gaps = 45/395 (11%)
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD 118
+GY +T ++T+I L K A ALID M P LVT +++ C D
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG---VVVNGLCKRGD 236
Query: 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFN 176
A N ++ K G+ + ++ LC+YK++ DA +L K + P N +++
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP-NVVTYS 295
Query: 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236
+++ CN G +A R+ +M +R I DV +FS +I + K L + +L+D+M +
Sbjct: 296 SLISCLCNY-GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 237 MGIE---------------------------------C--DRKVYNAVIHALAKGRLVKD 261
I+ C D YN +I K + V++
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEE 414
Query: 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD 321
+ + + M ++G+ N VTYN LI+ L +A D A++ F EM+ G+ P I TY+ LD
Sbjct: 415 GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 322 -IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP 378
+ + G E+ + E +++ +PT TY ++I+ + + + + ++ +S G P
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534
Query: 379 DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
D +Y +I G EEA + EMKE LP
Sbjct: 535 DVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 177/401 (44%), Gaps = 47/401 (11%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E+ +++ + K+ KFD +L ++M+ P T ILI +C + A+
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI-PH--NHYTYSILINCFCRRSQLPLAL 136
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL---MFCNKDVFPFNTKSFNIILN 180
+ + I LL+ C K + +A L MF + NT +FN +++
Sbjct: 137 AVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG--YQPNTVTFNTLIH 194
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
G + + EA + M +G D+V++ +++ K + L ++M++ +E
Sbjct: 195 GLF-LHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC----------- 289
+YN +I L K + + DA++L K ME KG+ PNVVTY+SLI LC
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313
Query: 290 ------------------------KARKLDEARQAFDEMLQRGISPTIRTYHAFLD---I 322
K KL EA + +DEM++R I P+I TY + ++ +
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 323 IRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSS 382
+E + E M C P TY LIK F ++++ +V+ E+S+ G + +
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 383 YTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
Y LI LF G + A + + EM + P T L D
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 20/283 (7%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
+ +I K K A L DEM PS+VT +L I +C +HD
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL---INGFC-MHD-----RLDE 379
Query: 128 AYKRFKFAVG------IEDFQGLLSALCRYKNVQDA-EHLMFCNKDVFPFNTKSFNIILN 180
A + F+F V + + L+ C+YK V++ E ++ NT ++NI++
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
G G A+ ++ EM G+ ++++++ ++ K L K + +F+ ++R +E
Sbjct: 440 GLFQA-GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
YN +I + K V+D L ++ KGV P+VV YN++I C+ +EA
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558
Query: 301 FDEMLQRGISPTIRTYHAFLDI-IRTG--EEVFGLLESMRKMG 340
F EM + G P Y+ + +R G E L++ MR G
Sbjct: 559 FKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 601
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
+ DA++L M + P+++ ++ L+ + K K D ++M GI TY
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
++ ++ +L M K+G +P T L+ + ++ + +++ G
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
P+ ++ LIH LFL+ K EA M K P+ T
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVT 223
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 42/249 (16%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
Q G +T Y+ +I L + D A + EM P+++T TLL C
Sbjct: 424 QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL---DGLCKNG 480
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177
+ +A+ F +R K I + ++ +C+ V+D
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED--------------------- 519
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
GW ++ +S +G+ DVV+++ +IS + + + + LF +MK
Sbjct: 520 ---GW-----------DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKED 565
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
G + YN +I A + + + L+K M G A + T L+ + +LD
Sbjct: 566 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLD-- 622
Query: 298 RQAFDEMLQ 306
++F +ML
Sbjct: 623 -KSFLDMLS 630
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 181/397 (45%), Gaps = 45/397 (11%)
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
Y +T ++T+I L K A ALID M P L T T+ + C D+
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV---VNGLCKRGDID 237
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNII 178
A++ ++ K + + ++ ALC YKNV DA +L NK + P N ++N +
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP-NVVTYNSL 296
Query: 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238
+ CN G +A R+ +M +R I +VV+FS +I + K L + +L+D+M +
Sbjct: 297 IRCLCNY-GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 355
Query: 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298
I+ D Y+++I+ + +A + + M K PNVVTYN+LIK CKA++++E
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415
Query: 299 QAFDEMLQR-----------------------------------GISPTIRTYHAFLD-I 322
+ F EM QR G+ P I TY LD +
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475
Query: 323 IRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380
+ G E+ + E ++K +P TY ++I+ + + + + ++ +S G P+
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 535
Query: 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
YT +I G EEA + EMKE LP T
Sbjct: 536 IIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 180/407 (44%), Gaps = 47/407 (11%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
QS S E++ +++ + K+ KFD +L + M+ L + ILI +C
Sbjct: 73 QSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN---ILINCFCRRS 129
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL---MFCNKDVFPFNTKS 174
+ A+ + + I LL+ C K + +A L MF + + NT +
Sbjct: 130 QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME--YQPNTVT 187
Query: 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234
FN +++G + + EA + M RG D+ ++ +++ K ++ L L +M
Sbjct: 188 FNTLIHGLF-LHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Query: 235 KRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC----- 289
++ IE D +Y +I AL + V DA++L M+ KG+ PNVVTYNSLI+ LC
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306
Query: 290 ------------------------------KARKLDEARQAFDEMLQRGISPTIRTYHAF 319
K KL EA + +DEM++R I P I TY +
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366
Query: 320 LD---IIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN 376
++ + +E + E M C P TY LIK F + ++ +++ E+S+ G
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426
Query: 377 GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
+ +Y LI LF G + A + + +M + P+ T +L D
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 473
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 142/334 (42%), Gaps = 49/334 (14%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y+++I L ++ A L+ +M + P++VT L+ A G+ + A
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID------AFVKEGKLVEAEK 346
Query: 128 AYKRF---KFAVGIEDFQGLLSALCRYKNVQDAEHL--MFCNKDVFPFNTKSFNIILNGW 182
Y I + L++ C + + +A+H+ + +KD FP N ++N ++ G+
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGF 405
Query: 183 C----------------------NII------------GSSREAERVWMEMSQRGICYDV 208
C N + G A++++ +M G+ D+
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDI 465
Query: 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268
+++S ++ K L K L +F+ +++ +E D YN +I + K V+D L S
Sbjct: 466 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525
Query: 269 MEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI-IRTGE 327
+ KGV PNV+ Y ++I C+ +EA F EM + G P TY+ + +R G+
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 585
Query: 328 EVFG--LLESMRKMGCQPTNDTYIMLIKKFSRWR 359
+ L++ MR G T M+I R
Sbjct: 586 KAASAELIKEMRSCGFVGDASTISMVINMLHDGR 619
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 3/230 (1%)
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250
+A ++ EM Q +V F+ ++S +K V+ L ++M+ + I D YN +I
Sbjct: 63 DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 122
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
+ + + A++++ M + G P++VT +SL+ C +++ EA D+M
Sbjct: 123 NCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQ 182
Query: 311 PTIRTYHAF---LDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKV 367
P T++ L + E L++ M GCQP TY ++ + +
Sbjct: 183 PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 242
Query: 368 WNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
++ + D YT +I AL + +A + EM K + P T
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292
Score = 36.2 bits (82), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE---VFGLLESMRKMGCQPTNDTYI 349
KLD+A F EM+Q P+I ++ L I + V L E M+ + +Y
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEA 399
+LI F R Q V ++ + G PD + ++L++ ++ EA
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEA 169
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 200/433 (46%), Gaps = 20/433 (4%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T+I L K A AL+D+M P LVT T ++ C
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT---VVNGLCKRG 237
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D+ A++ ++ K + + ++ LC+YK++ DA +L NK + P + ++
Sbjct: 238 DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP-DVFTY 296
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+ +++ CN G +A R+ +M +R I +VV+FS +I + K L + +L+D+M
Sbjct: 297 SSLISCLCN-YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 355
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
+ I+ D Y+++I+ + +A + + M K PNVVTY++LIK CKA++++
Sbjct: 356 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVE 415
Query: 296 EARQAFDEMLQRGISPTIRTY----HAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIML 351
E + F EM QRG+ TY H F R + + + M +G P TY +L
Sbjct: 416 EGMELFREMSQRGLVGNTVTYTTLIHGFFQ-ARDCDNAQMVFKQMVSVGVHPNILTYNIL 474
Query: 352 IKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ + + V+ + + PD +Y +I + GK+E+ + + + K +
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGV 534
Query: 412 LPEPKTDELLQDWSYNKQFVERQIASLKAHQ-----PQSGQ-NTRVISKKSDQDREFLQQ 465
P + K E + LK + P SG NT + ++ D DRE
Sbjct: 535 SPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDRE--AS 592
Query: 466 PETRRVVRHQGFS 478
E + +R GF+
Sbjct: 593 AELIKEMRSCGFA 605
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 172/404 (42%), Gaps = 53/404 (13%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E++ +++ + K+ KF+ +L ++M+ L T I I +C + A+
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS---IFINCFCRRSQLSLAL 138
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL------MFCNKDVFPFNTKSFNI 177
+ + I LL+ C K + DA L M D F F T +
Sbjct: 139 AVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGL 198
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
L+ + EA + +M QRG D+V++ +++ K ++ L L +M++
Sbjct: 199 FLHN------KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKG 252
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC-------- 289
IE D +YN +I L K + + DA++L M+ KG+ P+V TY+SLI LC
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312
Query: 290 ---------------------------KARKLDEARQAFDEMLQRGISPTIRTYHAFLD- 321
K KL EA + +DEM++R I P I TY + ++
Sbjct: 313 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 372
Query: 322 --IIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD 379
+ +E + E M C P TY LIK F + ++ +++ E+S+ G +
Sbjct: 373 FCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGN 432
Query: 380 RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
+YT LIH F + A + +M + P T +L D
Sbjct: 433 TVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLD 476
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
V DA+ L M + P++V +N L+ + K K + ++M GIS + TY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
F++ ++ +L M K+G +P T L+ + ++ + + +++ E G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD ++T LIH LFL+ K EA +M ++ P+ T
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 98/240 (40%), Gaps = 9/240 (3%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y T+I K ++ + L EM + VT TL I + D A F
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL---IHGFFQARDCDNAQMVFK 457
Query: 128 AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FCNKDVFPFNTKSFNIILNGWCNII 186
I + LL LC+ + A + + + + ++NI++ G C
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKA- 516
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G + ++ +S +G+ +V++++ +IS + + + + L +MK G + Y
Sbjct: 517 GKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
N +I A + + + L+K M G A + T L+ + +LD ++F +ML
Sbjct: 577 NTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTNMLHDGRLD---KSFLDMLS 632
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 169/376 (44%), Gaps = 24/376 (6%)
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119
G +H+ Y+ MI L + + A A++ +M GPS+VT +LL +C + +
Sbjct: 95 GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLL---NGFCHGNRI 151
Query: 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM------FCNKDVFPFNTK 173
A+ + F L+ L ++ +A L+ C D+
Sbjct: 152 SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV----- 206
Query: 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233
++ ++NG C G A + +M + I DVV +S +I K R++ L LF +
Sbjct: 207 TYGAVINGLCKR-GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 234 MKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293
M GI D Y+++I L DA L+ M E+ + PNVVT+NSLI K K
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 294 LDEARQAFDEMLQRGISPTIRTYHAFL------DIIRTGEEVFGLLESMRKMGCQPTNDT 347
L EA + FDEM+QR I P I TY++ + D + +++F L+ S C P T
Sbjct: 326 LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD---CLPDVVT 382
Query: 348 YIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMK 407
Y LI F + ++ + +++ ++S G + +YT LIH F + A + +M
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMV 442
Query: 408 EKQLLPEPKTDELLQD 423
+ P T L D
Sbjct: 443 SDGVHPNIMTYNTLLD 458
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 184/400 (46%), Gaps = 45/400 (11%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T++ L + K A AL++ M P LVT +I C
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA---VINGLCKRG 219
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
+ A+N ++ K + + ++ +LC+Y++V DA +L NK + P + ++
Sbjct: 220 EPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRP-DVFTY 278
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+ +++ CN G +A R+ +M +R I +VV+F+ +I ++K L + +LFD+M
Sbjct: 279 SSLISCLCN-YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 337
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL- 294
+ I+ + YN++I+ + +A + M K P+VVTYN+LI CKA+K+
Sbjct: 338 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVV 397
Query: 295 ----------------------------------DEARQAFDEMLQRGISPTIRTYHAFL 320
D A+ F +M+ G+ P I TY+ L
Sbjct: 398 DGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
Query: 321 D-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
D + + G E+ + E ++K +P TY ++ + + + + + ++ +S G
Sbjct: 458 DGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK 517
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD +Y +I G EEA+ +++MKE LP+ T
Sbjct: 518 PDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGT 557
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 172/374 (45%), Gaps = 14/374 (3%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y T+I L K R D A L EM P + T +L+ + Y D R ++
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 128 AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNGWCNI 185
K + F L+ A + + +AE L + + P N ++N ++NG+C +
Sbjct: 303 ERK---INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP-NIVTYNSLINGFC-M 357
Query: 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
EA++++ M + DVV+++ +I+ + KA+ + + LF M R G+ +
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
Y +IH + +A + K M GV PN++TYN+L+ LCK KL++A F+ +
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477
Query: 306 QRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
+ + P I TY+ + + + G E+ + L S+ G +P Y +I F +
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT----D 418
+ ++ ++ E+G PD +Y LI A +G + + EM+ + + T
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597
Query: 419 ELLQDWSYNKQFVE 432
++L D +K F+E
Sbjct: 598 DMLHDGRLDKGFLE 611
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 121/283 (42%), Gaps = 39/283 (13%)
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250
EA ++ EM + +V FS ++S +K + V+ ++M+ +G+ + YN +I
Sbjct: 48 EAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMI 107
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
+ L + + A++++ M + G P++VT NSL+ C ++ EA D+M++ G
Sbjct: 108 NCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ 167
Query: 311 PTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDT-------------------- 347
P T+ + + E L+E M GCQP T
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227
Query: 348 ---------------YIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL 392
Y +I ++R + ++ E+ G PD +Y++LI L
Sbjct: 228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 287
Query: 393 NGKLEEAHQYYMEMKEKQLLPEPKT-DELLQDWSYNKQFVERQ 434
G+ +A + +M E+++ P T + L+ ++ + +E +
Sbjct: 288 YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 38/163 (23%)
Query: 293 KLDEARQAFDEMLQRGISPTIRTYHAFLD----------IIRTGE--EVFG--------- 331
KLDEA F EM++ P+I + L +I GE E+ G
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 332 -----------------LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374
+L M K+G P+ T L+ F + + +++ E
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164
Query: 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
G PD ++T L+H LF + K EA M K P+ T
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 207
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 173/359 (48%), Gaps = 9/359 (2%)
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD 118
+G+ + ++ ++ + F+ W+ +E + ++ + ILI+ C +
Sbjct: 123 NGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKS----KVVLDVYSFGILIKGCCEAGE 178
Query: 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF-CNKDVFPFNTKSFNI 177
+ ++ + F F+ + + L+ C+ ++ A+ L F K N +++ +
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
++NG G ++ ++ +M + G+ ++ +++C+++ K ++FD+M+
Sbjct: 239 LINGLFKN-GVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRER 297
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
G+ C+ YN +I L + + +A ++ M+ G+ PN++TYN+LI C KL +A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 298 RQAFDEMLQRGISPTIRTYHAFLD-IIRTGEE--VFGLLESMRKMGCQPTNDTYIMLIKK 354
++ RG+SP++ TY+ + R G+ +++ M + G +P+ TY +LI
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
F+R ++ + E G PD +Y+ LIH + G++ EA + + M EK P
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEP 476
Score = 122 bits (305), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 149/302 (49%), Gaps = 7/302 (2%)
Query: 125 AFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF-CNKDVFPFNTKSFNIILNGWC 183
+F+ + K + + F L+ C ++ + L+ + F N + +++G C
Sbjct: 150 SFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCC 209
Query: 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243
G +A+ ++ EM + G+ + +++ +I+ K + ++++M+ G+ +
Sbjct: 210 KK-GEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268
Query: 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303
YN V++ L K KDA + M E+GV+ N+VTYN+LI LC+ KL+EA + D+
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328
Query: 304 MLQRGISPTIRTYHAFLD----IIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
M GI+P + TY+ +D + + G+ L ++ G P+ TY +L+ F R
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGK-ALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE 419
K+ E+ E G P + +YT LI + +E+A Q + M+E L+P+ T
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYS 447
Query: 420 LL 421
+L
Sbjct: 448 VL 449
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 9/368 (2%)
Query: 73 AILGKVR-KFDTAWALIDEMRGGETGPSLVTKQTLL-ILIRRYCAVHDVGRAINAFYAYK 130
I GK+ +F T+ +L+ + ET TK L ++I Y + +I+ F
Sbjct: 65 VISGKIHSQFFTSSSLLHYLTESETSK---TKFRLYEVIINSYVQSQSLNLSISYFNEMV 121
Query: 131 RFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190
F G F LL+ + + NK + SF I++ G C G
Sbjct: 122 DNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEA-GEIE 180
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250
++ + +E+++ G +VV ++ +I K + K LF +M ++G+ + + Y +I
Sbjct: 181 KSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI 240
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
+ L K + K + + M+E GV PN+ TYN ++ LCK + +A Q FDEM +RG+S
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVS 300
Query: 311 PTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKV 367
I TY+ + + E +++ M+ G P TY LI F + G +
Sbjct: 301 CNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 368 WNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYN 427
++ G P +Y L+ G A + EM+E+ + P T +L D
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420
Query: 428 KQFVERQI 435
+E+ I
Sbjct: 421 SDNMEKAI 428
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 154/332 (46%), Gaps = 42/332 (12%)
Query: 17 EMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLW-AGKQSGYAHSTREYHTMIAIL 75
EM K++E G+ + + V++ + D F ++ ++ G + + Y+T+I L
Sbjct: 254 EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGL 313
Query: 76 GKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA 135
+ K + A ++D+M+ P+L+T TL I +C V +G+A++ K
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTL---IDGFCGVGKLGKALSLCRDLKS---- 366
Query: 136 VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERV 195
+GL +L Y NI+++G+C G + A ++
Sbjct: 367 ------RGLSPSLVTY------------------------NILVSGFCRK-GDTSGAAKM 395
Query: 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255
EM +RGI V+++ +I ++++ N+ K ++L M+ +G+ D Y+ +IH
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCI 455
Query: 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRT 315
+ +A L KSM EK PN V YN++I CK A + EM ++ ++P + +
Sbjct: 456 KGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVAS 515
Query: 316 YHAFLDII---RTGEEVFGLLESMRKMGCQPT 344
Y ++++ R +E L+E M G P+
Sbjct: 516 YRYMIEVLCKERKSKEAERLVEKMIDSGIDPS 547
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 156/319 (48%), Gaps = 15/319 (4%)
Query: 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--F 162
T L+ C V AI + + + + ++S LC+ V++A ++
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 163 CNKDVFPFNTKSFNIILNGWC--NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220
+D P NT ++N +++ C N + + E RV ++ +GI DV +F+ +I
Sbjct: 357 ITRDCSP-NTVTYNTLISTLCKENQVEEATELARV---LTSKGILPDVCTFNSLIQGLCL 412
Query: 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL-AKGRLVKDAISLMKSMEEKGVAPNVV 279
RN + LF++M+ G E D YN +I +L +KG+L +A++++K ME G A +V+
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL-DEALNMLKQMELSGCARSVI 471
Query: 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESM 336
TYN+LI CKA K EA + FDEM G+S TY+ +D + R E+ L++ M
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
Query: 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL 396
G +P TY L+ F R + ++ NG PD +Y LI L G++
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591
Query: 397 EEAHQYY--MEMKEKQLLP 413
E A + ++MK L P
Sbjct: 592 EVASKLLRSIQMKGINLTP 610
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 160/368 (43%), Gaps = 20/368 (5%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
Q GY Y+++I+ L K+ + A ++D+M + P+ VT T LI C +
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNT---LISTLCKEN 379
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM------FCNKDVFPFN 171
V A + F L+ LC +N + A L C D F
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF--- 436
Query: 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231
++N++++ C+ G EA + +M G V++++ +I + KA + +F
Sbjct: 437 --TYNMLIDSLCS-KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493
Query: 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291
D+M+ G+ + YN +I L K R V+DA LM M +G P+ TYNSL+ C+
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRG 553
Query: 292 RKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTY 348
+ +A M G P I TY + + + G E LL S++ G T Y
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Query: 349 IMLIKKFSRWRQFGNVFKVWNEISE-NGNGPDRSSYTALIHALF-LNGKLEEAHQYYMEM 406
+I+ R R+ ++ E+ E N PD SY + L G + EA + +E+
Sbjct: 614 NPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVEL 673
Query: 407 KEKQLLPE 414
EK +PE
Sbjct: 674 LEKGFVPE 681
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 174/405 (42%), Gaps = 16/405 (3%)
Query: 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG--ETGPSLV 101
D AA F A K+ ++ Y ++ LG+ FD ++++M+ E G S
Sbjct: 62 DDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTS-- 119
Query: 102 TKQTLLILIRRYCAVHDVGRAINAF-YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE-- 158
T LILI Y ++ + F + +L+ L +++ E
Sbjct: 120 ---TFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEIS 176
Query: 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY 218
H + P + +FN+++ C R A + +M G+ D +F+ ++ Y
Sbjct: 177 HAKMSVWGIKP-DVSTFNVLIKALCR-AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGY 234
Query: 219 SKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME-EKGVAPN 277
+ +L LR+ +QM G N ++H K V+DA++ ++ M + G P+
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLE 334
T+N+L+ LCKA + A + D MLQ G P + TY++ + + + GE E +L+
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 335 SMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394
M C P TY LI + Q ++ ++ G PD ++ +LI L L
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 395 KLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLK 439
A + + EM+ K P+ T +L D +K ++ + LK
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 138/311 (44%), Gaps = 12/311 (3%)
Query: 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCN 164
T +LI+ C H + AI + + D + + + Y D + +
Sbjct: 191 TFNVLIKALCRAHQLRPAILMLEDMPSYGL---VPDEKTFTTVMQGYIEEGDLDGALRIR 247
Query: 165 KDVFPFNTK----SFNIILNGWCNIIGSSREAERVWMEMS-QRGICYDVVSFSCIISCYS 219
+ + F S N+I++G+C G +A EMS Q G D +F+ +++
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKE-GRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279
KA ++ + + D M + G + D YN+VI L K VK+A+ ++ M + +PN V
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD---IIRTGEEVFGLLESM 336
TYN+LI LCK +++EA + + +GI P + T+++ + + R L E M
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426
Query: 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL 396
R GC+P TY MLI + + ++ +G +Y LI K
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 397 EEAHQYYMEMK 407
EA + + EM+
Sbjct: 487 REAEEIFDEME 497
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 168/369 (45%), Gaps = 9/369 (2%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
++ E + LG +KFD A D + S++ + I+I V A
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA 193
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALC---RYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180
N F + F++ + + L+SA RY+ + M +D ++N+ILN
Sbjct: 194 NMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKM--EEDGCKPTLITYNVILN 251
Query: 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
+ + + + +M GI D +++ +I+C + + ++F++MK G
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS 311
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
D+ YNA++ K K+A+ ++ M G +P++VTYNSLI + LDEA +
Sbjct: 312 YDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMEL 371
Query: 301 FDEMLQRGISPTIRTYHAFLDII-RTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSR 357
++M ++G P + TY L R G E + E MR GC+P T+ IK +
Sbjct: 372 KNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGN 431
Query: 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+F + K+++EI+ G PD ++ L+ NG E + EMK +PE +T
Sbjct: 432 RGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERET 491
Query: 418 -DELLQDWS 425
+ L+ +S
Sbjct: 492 FNTLISAYS 500
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 109/447 (24%), Positives = 193/447 (43%), Gaps = 74/447 (16%)
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD 118
+G++ S Y+++I+ + D A L ++M T P + T TLL R
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFER------ 396
Query: 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNII 178
G+ +A ++ + A G +C + +A M+ N+ F K F+ I
Sbjct: 397 AGKVESAMSIFEEMRNA-------GCKPNICTF----NAFIKMYGNRGKFTEMMKIFDEI 445
Query: 179 --------LNGWCNII------GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224
+ W ++ G E V+ EM + G + +F+ +IS YS+ +
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505
Query: 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284
+ + ++ +M G+ D YN V+ ALA+G + + + ++ ME+ PN +TY SL
Sbjct: 506 EQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSL 565
Query: 285 ------------------------IKP----------LC-KARKLDEARQAFDEMLQRGI 309
I+P +C K L EA +AF E+ +RG
Sbjct: 566 LHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGF 625
Query: 310 SPTIRTYHAFLDIIRTGEEVF---GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFK 366
SP I T ++ + I + V G+L+ M++ G P+ TY L+ SR FG +
Sbjct: 626 SPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEE 685
Query: 367 VWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT-DELLQDWS 425
+ EI G PD SY +I+A N ++ +A + + EM+ ++P+ T + + ++
Sbjct: 686 ILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYA 745
Query: 426 YNKQFVERQIASLK---AHQPQSGQNT 449
+ F E I ++ H + QNT
Sbjct: 746 ADSMF-EEAIGVVRYMIKHGCRPNQNT 771
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 156/359 (43%), Gaps = 41/359 (11%)
Query: 20 NKIEECGIKVSSELVSEVLSW-------VRNDWEAAFTFFLWAGKQSGYAHSTREYHTMI 72
++I CG L ++++W +N ++ + K++G+ ++T+I
Sbjct: 443 DEINVCG------LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496
Query: 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRR---------YCAVHDVGRAI 123
+ + F+ A + M P L T T+L + R A + GR
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCK 556
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCR--YKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181
Y A GL+ +L Y V + ++ K+ +++
Sbjct: 557 PNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLL----------KTL-VLVCS 605
Query: 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241
C+++ EAER + E+ +RG D+ + + ++S Y + + + K + D MK G
Sbjct: 606 KCDLL---PEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
YN++++ ++ + +++ + KG+ P++++YN++I C+ ++ +A + F
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722
Query: 302 DEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSR 357
EM GI P + TY+ F+ EE G++ M K GC+P +TY ++ + +
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 162/409 (39%), Gaps = 22/409 (5%)
Query: 21 KIEECGIK---VSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK 77
K+EE G K ++ ++ V + W T + K G A Y+T+I +
Sbjct: 233 KMEEDGCKPTLITYNVILNVFGKMGTPWNK-ITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Query: 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137
A + +EM+ VT LL + Y H A+ F+
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV---YGKSHRPKEAMKVLNEMVLNGFSPS 348
Query: 138 IEDFQGLLSALCRYKNVQDAEHLM------FCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191
I + L+SA R + +A L DVF + T +L+G+ G
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT-----LLSGF-ERAGKVES 402
Query: 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251
A ++ EM G ++ +F+ I Y +++++FD++ G+ D +N ++
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462
Query: 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311
+ + + + K M+ G P T+N+LI + ++A + ML G++P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 312 TIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVW 368
+ TY+ L + G E+ +L M C+P TY L+ ++ ++ G + +
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582
Query: 369 NEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
E+ P L+ L EA + + E+KE+ P+ T
Sbjct: 583 EEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 167/367 (45%), Gaps = 12/367 (3%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
K +G+++ Y+ ++ + GK + A +++EM PS+VT +L+ R +
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGML 365
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKS 174
+ N A K K V + LLS R V+ A + N P N +
Sbjct: 366 DEAMELKNQM-AEKGTKPDVFT--YTTLLSGFERAGKVESAMSIFEEMRNAGCKP-NICT 421
Query: 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234
FN + + N G E +++ E++ G+ D+V+++ +++ + + +V +F +M
Sbjct: 422 FNAFIKMYGNR-GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480
Query: 235 KRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294
KR G +R+ +N +I A ++ + A+++ + M + GV P++ TYN+++ L +
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 295 DEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKK 354
+++ + EM P TY + L G+E+ GL+ S+ + + +L+K
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI-GLMHSLAEEVYSGVIEPRAVLLKT 599
Query: 355 F----SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410
S+ + ++E+ E G PD ++ +++ + +A+ MKE+
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG 659
Query: 411 LLPEPKT 417
P T
Sbjct: 660 FTPSMAT 666
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 116/248 (46%), Gaps = 13/248 (5%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV-GRAINAF 126
Y +++ ++ +L +E+ G P V +TL+++ C+ D+ A AF
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLV----CSKCDLLPEAERAF 617
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FCNKDVFPFNTKSFN--IILNGWC 183
K F+ I ++S R + V A ++ + + F + ++N + ++
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRS 677
Query: 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243
G S E R E+ +GI D++S++ +I Y + + R+F +M+ GI D
Sbjct: 678 ADFGKSEEILR---EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDV 734
Query: 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303
YN I + A + ++AI +++ M + G PN TYNS++ CK + DEA+ ++
Sbjct: 735 ITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVED 794
Query: 304 MLQRGISP 311
+ R + P
Sbjct: 795 L--RNLDP 800
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 163/349 (46%), Gaps = 23/349 (6%)
Query: 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNK 165
I+I C A++ F + + + L+ LC D ++ +
Sbjct: 250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309
Query: 166 DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225
++ P + +F+ +++ + G EA+ ++ EM RGI D ++++ +I + K LH
Sbjct: 310 NIIP-DVVTFSALIDVFVKE-GKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367
Query: 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLI 285
+ ++FD M G E D Y+ +I++ K + V D + L + + KG+ PN +TYN+L+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 286 KPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLESMRKMGCQ 342
C++ KL+ A++ F EM+ RG+ P++ TY LD + GE + + E M+K
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQY 402
Y ++I + + + ++ +S+ G PD +Y +I L G L EA
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 403 YMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRV 451
+ +MKE P+ D++YN ++AH SG + V
Sbjct: 548 FRKMKEDGCTPD--------DFTYN--------ILIRAHLGGSGLISSV 580
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 176/376 (46%), Gaps = 22/376 (5%)
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETG--PSLVTKQTLLILIRRYCAV 116
+G H MI + +K A++++ R + G P +T TL + +C
Sbjct: 99 NGIEHDMYTMTIMINCYCRKKKLLFAFSVLG--RAWKLGYEPDTITFSTL---VNGFCLE 153
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV---FPFNTK 173
V A+ K + L++ LC V +A L+ ++ V F +
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA--LVLIDRMVEYGFQPDEV 211
Query: 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233
++ +LN C G+S A ++ +M +R I VV +S +I K + L LF++
Sbjct: 212 TYGPVLNRLCKS-GNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 234 MKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293
M+ GI+ D Y+++I L D +++ M + + P+VVT+++LI K K
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330
Query: 294 LDEARQAFDEMLQRGISPTIRTYHAFLD------IIRTGEEVFGLLESMRKMGCQPTNDT 347
L EA++ ++EM+ RGI+P TY++ +D + ++F L+ S GC+P T
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVS---KGCEPDIVT 387
Query: 348 YIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMK 407
Y +LI + + ++ + +++ EIS G P+ +Y L+ +GKL A + + EM
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447
Query: 408 EKQLLPEPKTDELLQD 423
+ + P T +L D
Sbjct: 448 SRGVPPSVVTYGILLD 463
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 15/348 (4%)
Query: 20 NKIEECGIKVSSELVSEVLSWVRND--WE-AAFTFFLWAGKQSGYAHSTREYHTMIAILG 76
N++E GIK S ++ + ND W+ A G+ + +I +
Sbjct: 269 NEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN--IIPDVVTFSALIDVFV 326
Query: 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV 136
K K A L +EM P +T +L I +C + + A F
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSL---IDGFCKENCLHEANQMFDLMVSKGCEP 383
Query: 137 GIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194
I + L+++ C+ K V D L +K + P NT ++N ++ G+C G A+
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP-NTITYNTLVLGFCQS-GKLNAAKE 441
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254
++ EM RG+ VV++ ++ L+K L +F++M++ + +YN +IH +
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501
Query: 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR 314
V DA SL S+ +KGV P+VVTYN +I LCK L EA F +M + G +P
Sbjct: 502 NASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDF 561
Query: 315 TYHAFLDIIRTGEEVFG---LLESMRKMGCQPTNDTYIMLIKKFSRWR 359
TY+ + G + L+E M+ G + T M+I S R
Sbjct: 562 TYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 118/253 (46%), Gaps = 6/253 (2%)
Query: 177 IILNGWCNIIGSSREAERVW---MEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233
I N C+ + +++ + V M GI +D+ + + +I+CY + + L + +
Sbjct: 71 IDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGR 130
Query: 234 MKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293
++G E D ++ +++ V +A++L+ M E P++VT ++LI LC +
Sbjct: 131 AWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR 190
Query: 294 LDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTGEEVFG--LLESMRKMGCQPTNDTYIM 350
+ EA D M++ G P TY L+ + ++G L M + + + Y +
Sbjct: 191 VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSI 250
Query: 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410
+I + F + ++NE+ G D +Y++LI L +GK ++ + EM +
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310
Query: 411 LLPEPKTDELLQD 423
++P+ T L D
Sbjct: 311 IIPDVVTFSALID 323
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 42/247 (17%)
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119
G +T Y+T++ + K + A L EM PS+VT IL+ C ++
Sbjct: 415 GLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYG---ILLDGLCDNGEL 471
Query: 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIIL 179
+A+ F ++ + +GI G+ +NII+
Sbjct: 472 NKALEIFEKMQKSRMTLGI----GI------------------------------YNIII 497
Query: 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239
+G CN +A ++ +S +G+ DVV+++ +I K +L + LF +MK G
Sbjct: 498 HGMCNA-SKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556
Query: 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299
D YN +I A G + ++ L++ M+ G + + T +I L R+LD +
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDML-SDRRLD---K 612
Query: 300 AFDEMLQ 306
+F +ML
Sbjct: 613 SFLDMLS 619
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 185/404 (45%), Gaps = 37/404 (9%)
Query: 47 AAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM--RGGETGPSLVTKQ 104
+ F FF + Q G+ + Y + L F A +LI+ + R G+ S V
Sbjct: 100 SIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFIS 159
Query: 105 TLLILIRRYCAV---------HDVG---RAINAFYAYKRFKFAVGIEDFQGLLSALCR-- 150
+ + + C D+G AI F ++ +F V I LL + +
Sbjct: 160 LVEMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLN 219
Query: 151 --------YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202
Y + DA FP N FNI++N +C G+ +A++V+ E+++R
Sbjct: 220 PTGTIWGFYMEILDAG---------FPLNVYVFNILMNKFCKE-GNISDAQKVFDEITKR 269
Query: 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262
+ VVSF+ +I+ Y K NL + RL QM++ D Y+A+I+AL K + A
Sbjct: 270 SLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGA 329
Query: 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD- 321
L M ++G+ PN V + +LI + ++D ++++ +ML +G+ P I Y+ ++
Sbjct: 330 HGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNG 389
Query: 322 IIRTGEEVFG--LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD 379
+ G+ V +++ M + G +P TY LI F R ++ E+ +NG D
Sbjct: 390 FCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELD 449
Query: 380 RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
R ++AL+ + G++ +A + EM + P+ T ++ D
Sbjct: 450 RVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMD 493
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 15/260 (5%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y +I L K K D A L DEM P+ V TL+ H I+
Sbjct: 313 YSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI-------HGHSRNGEIDLMK 365
Query: 128 AYKRFKFAVGIED----FQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNG 181
+ + G++ + L++ C+ ++ A +++ + + P + ++ +++G
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP-DKITYTTLIDG 424
Query: 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241
+C G A + EM Q GI D V FS ++ K + R +M R GI+
Sbjct: 425 FCRG-GDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP 483
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
D Y ++ A K + L+K M+ G P+VVTYN L+ LCK ++ A
Sbjct: 484 DDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLL 543
Query: 302 DEMLQRGISPTIRTYHAFLD 321
D ML G+ P TY+ L+
Sbjct: 544 DAMLNIGVVPDDITYNTLLE 563
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 174/386 (45%), Gaps = 17/386 (4%)
Query: 46 EAAFTFFLWAGK-QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ 104
+ A FL+AGK G+ H+ YH+++ L + R FD +L+ ++R + P + +
Sbjct: 63 DLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRN--SYPPIKCGE 120
Query: 105 TLLI-LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163
L I L+R Y ++ F F + LL+ L + + D H MF
Sbjct: 121 NLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRF-DLVHAMFK 179
Query: 164 N-KDVFPFNTKSF--NIILNGWC--NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY 218
N K+ F F N+++ C N I S A +V E+ G+ ++V+++ I+ Y
Sbjct: 180 NSKESFGITPNIFTCNLLVKALCKKNDIES---AYKVLDEIPSMGLVPNLVTYTTILGGY 236
Query: 219 SKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278
++ R+ ++M G D Y ++ K +A ++M ME+ + PN
Sbjct: 237 VARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNE 296
Query: 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLES 335
VTY +I+ LCK +K EAR FDEML+R P +D + +E GL
Sbjct: 297 VTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRK 356
Query: 336 MRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395
M K C P N LI + + K+++E E G+ P +Y LI + G+
Sbjct: 357 MLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLIAGMCEKGE 415
Query: 396 LEEAHQYYMEMKEKQLLPEPKTDELL 421
L EA + + +M E++ P T +L
Sbjct: 416 LTEAGRLWDDMYERKCKPNAFTYNVL 441
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/371 (20%), Positives = 158/371 (42%), Gaps = 46/371 (12%)
Query: 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG-ETGPSLVTK 103
+E++ FL G S R +T++ +L + ++FD A+ + P++ T
Sbjct: 136 YESSMRIFLRI-PDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTC 194
Query: 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-- 161
+L++ C +D+ A + + +L +++ A+ ++
Sbjct: 195 N---LLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEE 251
Query: 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221
++ +P + ++ ++++G+C + G EA V +M + I + V++ +I K
Sbjct: 252 MLDRGWYP-DATTYTVLMDGYCKL-GRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKE 309
Query: 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME----------- 270
+ + +FD+M D + VI AL + V +A L + M
Sbjct: 310 KKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALL 369
Query: 271 -----------------------EKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307
EKG P+++TYN+LI +C+ +L EA + +D+M +R
Sbjct: 370 STLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYER 429
Query: 308 GISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNV 364
P TY+ ++ + + G +E +LE M ++GC P T+++L + + + +
Sbjct: 430 KCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDA 489
Query: 365 FKVWNEISENG 375
K+ + NG
Sbjct: 490 MKIVSMAVMNG 500
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 132/297 (44%), Gaps = 6/297 (2%)
Query: 134 FAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN--IIGSSRE 191
F + + +L L R + E LM ++ +P N+ ++ N + G
Sbjct: 79 FTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYES 138
Query: 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR-MGIECDRKVYNAVI 250
+ R+++ + G+ V S + +++ + + V +F K GI + N ++
Sbjct: 139 SMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLV 198
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
AL K ++ A ++ + G+ PN+VTY +++ ++ A++ +EML RG
Sbjct: 199 KALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWY 258
Query: 311 PTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKV 367
P TY +D + G E +++ M K +P TY ++I+ + ++ G +
Sbjct: 259 PDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNM 318
Query: 368 WNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424
++E+ E PD S +I AL + K++EA + +M + +P+ L W
Sbjct: 319 FDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHW 375
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 14/221 (6%)
Query: 214 IISCYSKARNLHKVLRLFDQMKRM--GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEE 271
++S ++ +N+ L++F + G + Y++++ L++ R SLM +
Sbjct: 52 LVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADL-- 109
Query: 272 KGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327
+ P + +L L + A + + + + F + G+ ++R+ + L+++ +
Sbjct: 110 RNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQ 169
Query: 328 EVFGLLESMRK-----MGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSS 382
F L+ +M K G P T +L+K + + +KV +EI G P+ +
Sbjct: 170 R-FDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVT 228
Query: 383 YTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
YT ++ G +E A + EM ++ P+ T +L D
Sbjct: 229 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMD 269
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 189/419 (45%), Gaps = 68/419 (16%)
Query: 19 RNKIEECGIKVSSELVSEVLSWV-RN---DWEA-----AFTFFLWAGKQSGYAHSTREYH 69
++ ++E ++VS LV EVL + RN D +A A+ FFLW+G+Q + H+ YH
Sbjct: 94 KSVLDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYH 153
Query: 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG---RAINAF 126
++ I + ++ W L+DEM + P+ T +T +LI C+ + G +A+ F
Sbjct: 154 LLMKIFAECGEYKAMWRLVDEMV-QDGFPT--TARTFNLLI---CSCGEAGLAKQAVVQF 207
Query: 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186
K F + PF S+N ILN +
Sbjct: 208 MKSKTFNYR---------------------------------PFK-HSYNAILNSLLG-V 232
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
+ E V+ +M + G DV++++ ++ + + + RLFD+M R G D Y
Sbjct: 233 KQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTY 292
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
N ++H L KG A++ + M+E G+ P+V+ Y +LI L +A L+ + DEM++
Sbjct: 293 NILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVK 352
Query: 307 RGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM-------GCQPTNDTYIMLIKKFSRWR 359
G P + Y ++ TG V G L+ ++M G P TY +I+
Sbjct: 353 AGCRPDVVCY----TVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAG 408
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK----QLLPE 414
+F + E+ G P+ Y+ L+ L GKL EA + EM +K L+P+
Sbjct: 409 EFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYVHLVPK 467
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 268 SMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327
S E++ V +Y+ L+K + + + DEM+Q G T RT++ L I GE
Sbjct: 139 SGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFN--LLICSCGE 196
Query: 328 E------VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRS 381
V ++S + +P +Y ++ +Q+ + V+ ++ E+G PD
Sbjct: 197 AGLAKQAVVQFMKS-KTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVL 255
Query: 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421
+Y L+ + GK++ + + EM P+ T +L
Sbjct: 256 TYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNIL 295
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 171/382 (44%), Gaps = 12/382 (3%)
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119
G AHS MI + RK A++ + ++ P V TLL C V
Sbjct: 118 GIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLL---NGLCLECRV 174
Query: 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV---FPFNTKSFN 176
A+ + L++ LC V DA L+ ++ V F N ++
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLI--DRMVETGFQPNEVTYG 232
Query: 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236
+LN C G + A + +M +R I D V +S II K +L LF++M+
Sbjct: 233 PVLNVMCKS-GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 291
Query: 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296
G + D YN +I D L++ M ++ ++PNVVT++ LI K KL E
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 297 ARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIK 353
A Q EM+QRGI+P TY++ +D EE +++ M GC P T+ +LI
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411
Query: 354 KFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
+ + + + +++ E+S G + +Y L+ +GKLE A + + EM +++ P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
Query: 414 EPKTDELLQDWSYNKQFVERQI 435
+ + ++L D + +E+ +
Sbjct: 472 DIVSYKILLDGLCDNGELEKAL 493
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 166/378 (43%), Gaps = 20/378 (5%)
Query: 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNK 165
I+I C + A N F + F I + L+ C D L+ +
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 166 DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225
+ P N +F+++++ + G REA+++ EM QRGI + ++++ +I + K L
Sbjct: 328 KISP-NVVTFSVLIDSFVKE-GKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385
Query: 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLI 285
+ +++ D M G + D +N +I+ K + D + L + M +GV N VTYN+L+
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Query: 286 KPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE-----EVFGLLESMRKM 339
+ C++ KL+ A++ F EM+ R + P I +Y LD + GE E+FG +E K
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE---KS 502
Query: 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEA 399
+ Y+++I + + + ++ + G D +Y +I L L +A
Sbjct: 503 KMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKA 562
Query: 400 HQYYMEMKEKQLLPEPKTDELL-------QDWSYNKQFVERQIASLKAHQPQSGQNTRVI 452
+ +M E+ P+ T +L D + + +E +S + + +
Sbjct: 563 DILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINM 622
Query: 453 SKKSDQDREFLQQPETRR 470
+ D+ FL T R
Sbjct: 623 LSSGELDKSFLDMLSTTR 640
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 121/262 (46%), Gaps = 4/262 (1%)
Query: 198 EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR 257
+M +GI + + + S +I+C+ + R L ++ ++G E D ++N +++ L
Sbjct: 113 QMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLEC 172
Query: 258 LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYH 317
V +A+ L+ M E G P ++T N+L+ LC K+ +A D M++ G P TY
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
Query: 318 AFLDII-RTGEEVFG--LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374
L+++ ++G+ LL M + + Y ++I + N F ++NE+
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
Query: 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQ 434
G D +Y LI G+ ++ + +M ++++ P T +L D S+ K+ R+
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLID-SFVKEGKLRE 351
Query: 435 IASLKAHQPQSGQNTRVISKKS 456
L Q G I+ S
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNS 373
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 158/381 (41%), Gaps = 46/381 (12%)
Query: 17 EMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQ-SGYAHSTREYHTMIAIL 75
E+ K+EE IK+ + S ++ + D F L+ + G+ Y+T+I
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308
Query: 76 GKVRKFDTAWALIDEMRGGETGPSLVT-----------------KQTLLILIRRYCAVHD 118
++D L+ +M + P++VT Q L +++R A +
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNT 368
Query: 119 V--GRAINAFYAYKRFKFAVGIED-------------FQGLLSALCRYKNVQDAEHLM-- 161
+ I+ F R + A+ + D F L++ C+ + D L
Sbjct: 369 ITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE 428
Query: 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221
+ V NT ++N ++ G+C G A++++ EM R + D+VS+ ++
Sbjct: 429 MSLRGVIA-NTVTYNTLVQGFCQS-GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486
Query: 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281
L K L +F ++++ +E D +Y +IH + V DA L S+ KGV + Y
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546
Query: 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL------DIIRTGEEVFGLLES 335
N +I LC+ L +A F +M + G +P TY+ + D T E L+E
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAE---LIEE 603
Query: 336 MRKMGCQPTNDTYIMLIKKFS 356
M+ G T M+I S
Sbjct: 604 MKSSGFPADVSTVKMVINMLS 624
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 118/272 (43%), Gaps = 7/272 (2%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
Q G A +T Y+++I K + + A ++D M P ++T ILI YC +
Sbjct: 361 QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN---ILINGYCKAN 417
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
+ + F + L+ C+ ++ A+ L ++ V P + S+
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP-DIVSY 476
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
I+L+G C+ G +A ++ ++ + + D+ + II A + LF +
Sbjct: 477 KILLDGLCDN-GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
G++ D + YN +I L + + A L + M E+G AP+ +TYN LI+
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327
A + +EM G + T ++++ +GE
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVINMLSSGE 627
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 103/222 (46%), Gaps = 3/222 (1%)
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250
+A ++ +M Q V+ F+ + S +K + VL L QM+ GI + +I
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
+ + R + A S M + + G P+ V +N+L+ LC ++ EA + D M++ G
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190
Query: 311 PTIRTYHAFLD-IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKV 367
PT+ T + ++ + G+ + L++ M + G QP TY ++ + Q ++
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250
Query: 368 WNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409
++ E D Y+ +I L +G L+ A + EM+ K
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 186/373 (49%), Gaps = 15/373 (4%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
++ +I L K K + A ++++M+ P++V+ TL I YC + G+ A
Sbjct: 226 FNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTL---IDGYCKLGGNGKMYKADA 282
Query: 128 AYKRF---KFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNGW 182
K + + F L+ + N+ + + ++DV P N S+N ++NG
Sbjct: 283 VLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKP-NVISYNSLINGL 341
Query: 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242
CN G EA + +M G+ ++++++ +I+ + K L + L +F +K G
Sbjct: 342 CNG-GKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPT 400
Query: 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302
++YN +I A K + D +L + ME +G+ P+V TYN LI LC+ ++ A++ FD
Sbjct: 401 TRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFD 460
Query: 303 EMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
++ +G+ P + T+H ++ R GE + LL+ M KMG +P + TY +++K + +
Sbjct: 461 QLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEG 519
Query: 360 QFGNVFKVWNEIS-ENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTD 418
+ ++ E + +SY L+ GKLE+A+ EM EK L+P T
Sbjct: 520 NLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Query: 419 ELLQDWSYNKQFV 431
E++++ ++ FV
Sbjct: 580 EIVKEEMVDQGFV 592
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 16/305 (5%)
Query: 121 RAINAFYAYK---RFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF----NTK 173
R+ + Y YK R K + F +++ALC+ + A +M +D+ + N
Sbjct: 203 RSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM---EDMKVYGCSPNVV 259
Query: 174 SFNIILNGWCNIIGSSR--EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231
S+N +++G+C + G+ + +A+ V EM + + ++ +F+ +I + K NL +++F
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVF 319
Query: 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291
+M ++ + YN++I+ L G + +AIS+ M GV PN++TYN+LI CK
Sbjct: 320 KEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKN 379
Query: 292 RKLDEARQAFDEMLQRGISPTIRTYHAFLDI-IRTG--EEVFGLLESMRKMGCQPTNDTY 348
L EA F + +G PT R Y+ +D + G ++ F L E M + G P TY
Sbjct: 380 DMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Query: 349 IMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408
LI R K++++++ G PD ++ L+ G+ +A EM +
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSK 498
Query: 409 KQLLP 413
L P
Sbjct: 499 MGLKP 503
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 7/220 (3%)
Query: 187 GSSREAERVWMEMSQ-RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
GS + ++ +S +C + + ++ Y+ F + G +
Sbjct: 131 GSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALS 190
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
++ AL K D + K M + + PNV T+N +I LCK K+++AR ++M
Sbjct: 191 CKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMK 250
Query: 306 QRGISPTIRTYHAFLD----IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359
G SP + +Y+ +D + G+ + +L+ M + P T+ +LI F +
Sbjct: 251 VYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDD 310
Query: 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEA 399
KV+ E+ + P+ SY +LI+ L GK+ EA
Sbjct: 311 NLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEA 350
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 130/306 (42%), Gaps = 62/306 (20%)
Query: 18 MRNKIEECGIKVSSELVSEVLS-WVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILG 76
MR+K+ G++ + + +++ + +ND + K G +TR Y+ +I
Sbjct: 353 MRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYC 412
Query: 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV 136
K+ K D +AL +EM R V DVG
Sbjct: 413 KLGKIDDGFALKEEM-------------------EREGIVPDVGT--------------- 438
Query: 137 GIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194
+ L++ LCR N++ A+ L +K + T F+I++ G+C G SR+A
Sbjct: 439 ----YNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVT--FHILMEGYCR-KGESRKAAM 491
Query: 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM-KRMGIECDRKVYNAVIHAL 253
+ EMS+ G+ ++++ ++ Y K NL + QM K + + YN ++
Sbjct: 492 LLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGY 551
Query: 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTI 313
++ ++DA L+ M EKG+ PN +TY ++K +EM+ +G P I
Sbjct: 552 SQKGKLEDANMLLNEMLEKGLVPNRITY-EIVK---------------EEMVDQGFVPDI 595
Query: 314 RTYHAF 319
H F
Sbjct: 596 EG-HLF 600
>sp|Q9M2C8|PP291_ARATH Pentatricopeptide repeat-containing protein At3g61360
OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1
Length = 498
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 179/372 (48%), Gaps = 13/372 (3%)
Query: 29 VSSELVSEVLSWV---RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAW 85
+S E VSEVL + ++ A FF ++ K S + ++ + + IL ++R FD AW
Sbjct: 64 LSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMRYFDQAW 123
Query: 86 ALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR--FKFAVGIEDFQG 143
AL+ E+R + P+L++ +++ IL+ + + AF ++ F+ G+++F
Sbjct: 124 ALMAEVR--KDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDEFNI 181
Query: 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRG 203
LL A C + +++A + F + K+ NI+L G+ G E + EM +RG
Sbjct: 182 LLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLLGFKEA-GDVTATELFYHEMVKRG 240
Query: 204 ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263
+ V++ I + K RN + LRLF+ M R+ + ++ +IH R A
Sbjct: 241 FKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKAR 300
Query: 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA-FLDI 322
L + ++G+ P+ YN+L+ L K + A + EM ++GI P T+H+ F+ +
Sbjct: 301 QLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGM 360
Query: 323 IRTGEEVF-GLLESMRKM---GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP 378
+++ E F G+ E +KM P T +ML+K F + +W + E G P
Sbjct: 361 MKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNLGLDLWKYMLEKGYCP 420
Query: 379 DRSSYTALIHAL 390
+ L AL
Sbjct: 421 HGHALELLTTAL 432
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 18/247 (7%)
Query: 184 NIIGSSREAERVWMEMSQ-RGICYDVVSF---SCIISCYSKARNLHKVLRLFDQM----- 234
+I+ R ++ W M++ R +++SF S ++ +K + + L F +M
Sbjct: 111 HILARMRYFDQAWALMAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIF 170
Query: 235 -KRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293
K+ G++ +N ++ A R +K+A S+ + + + P+V T N L+ +A
Sbjct: 171 RKKFGVD----EFNILLRAFCTEREMKEARSIFEKLHSR-FNPDVKTMNILLLGFKEAGD 225
Query: 294 LDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIM 350
+ + EM++RG P TY +D R E L E M ++ T
Sbjct: 226 VTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTT 285
Query: 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410
LI R ++++EIS+ G PD +Y AL+ +L G + A + EM+EK
Sbjct: 286 LIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKG 345
Query: 411 LLPEPKT 417
+ P+ T
Sbjct: 346 IEPDSVT 352
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 183/400 (45%), Gaps = 45/400 (11%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T+I L K A AL+D M P+LVT +++ C
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG---VVVNGLCKRG 239
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D+ A N + K + + ++ +LC+Y++ DA +L NK V P N ++
Sbjct: 240 DIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP-NVITY 298
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+ +++ CN S +A R+ +M +R I +VV+F+ +I + K L + +L+D+M
Sbjct: 299 SSLISCLCNYERWS-DASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMI 357
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
+ I+ D Y+++I+ + +A + + M K PNVVTYN+LI CKA+++D
Sbjct: 358 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRID 417
Query: 296 EARQAFDEMLQRG-----------------------------------ISPTIRTYHAFL 320
E + F EM QRG + P I TY+ L
Sbjct: 418 EGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLL 477
Query: 321 D-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
D + + G E+ + E +++ +PT TY ++I+ + + + + ++ +S G
Sbjct: 478 DGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 537
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD Y +I G EEA + +M+E LP+ T
Sbjct: 538 PDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 178/401 (44%), Gaps = 24/401 (5%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E++ +++ + K++KFD +L ++M+ +L T ILI +C + A+
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN---ILINCFCRRSQISLAL 140
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL------MFCNKDVFPFNTKSFNI 177
+ + I LL+ C K + DA L M D F T +
Sbjct: 141 ALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGL 200
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
L+ + EA + M QRG ++V++ +++ K ++ L ++M+
Sbjct: 201 FLHN------KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 254
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
IE + +Y+ VI +L K R DA++L ME KGV PNV+TY+SLI LC + +A
Sbjct: 255 KIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDA 314
Query: 298 RQAFDEMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKK 354
+ +M++R I+P + T++A +D ++ G+ E L + M K P TY LI
Sbjct: 315 SRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 374
Query: 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
F + ++ + P+ +Y LI+ +++E + + EM ++ L+
Sbjct: 375 FCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGN 434
Query: 415 PKTDELLQDWSY------NKQFVERQIASLKAHQPQSGQNT 449
T L + N Q V +Q+ S H NT
Sbjct: 435 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
+ DAI L M + P++ +N L+ + K +K D ++M + GIS + TY+
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNI 125
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
++ ++ LL M K+G +P+ T L+ + ++ + + +++ E G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD ++T LIH LFL+ K EA M ++ P T
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVT 227
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 173/367 (47%), Gaps = 13/367 (3%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T++ L + K A AL++ M P LVT + I C
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV---INGLCKRG 229
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
+ A+N ++ K + + ++ LC+YK++ DA L K + P + ++
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP-DVFTY 288
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
N +++ CN G +A R+ +M ++ I D+V F+ +I + K L + +L+D+M
Sbjct: 289 NPLISCLCNY-GRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMV 347
Query: 236 RMGIEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293
+ C D YN +I K + V++ + + + M ++G+ N VTY +LI +AR
Sbjct: 348 K-SKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARD 406
Query: 294 LDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIM 350
D A+ F +M+ G+ P I TY+ LD + G E + E M+K + TY
Sbjct: 407 CDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTT 466
Query: 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410
+I+ + + + + ++ +S G P+ +YT ++ G EEA ++EMKE
Sbjct: 467 MIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526
Query: 411 LLPEPKT 417
LP T
Sbjct: 527 PLPNSGT 533
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 179/386 (46%), Gaps = 13/386 (3%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E+ +++ + K+ KFD +L ++M+ +L T I I +C + A+
Sbjct: 74 SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS---IFINYFCRRSQLSLAL 130
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNIILNGW 182
+ + I LL+ C + +A L+ ++ + +T +F +++G
Sbjct: 131 AILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG- 189
Query: 183 CNIIGSSREAERVWM--EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE 240
+ ++ +E V + M +G D+V++ +I+ K L L ++M++ IE
Sbjct: 190 --LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 247
Query: 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300
D +YN +I L K + + DA L ME KG+ P+V TYN LI LC + +A +
Sbjct: 248 ADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRL 307
Query: 301 FDEMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLESMRKMG-CQPTNDTYIMLIKKFS 356
+ML++ I+P + ++A +D ++ G+ E L + M K C P Y LIK F
Sbjct: 308 LSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFC 367
Query: 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416
++++ +V+ E+S+ G + +YT LIH F + A + +M + P+
Sbjct: 368 KYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 417 TDELLQDWSYNKQFVERQIASLKAHQ 442
T +L D N VE + + Q
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQ 453
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 12/338 (3%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y+T+I L K + D A+ L ++M P + T L+ + Y D R ++
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312
Query: 128 AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL---MFCNKDVFPFNTKSFNIILNGWCN 184
+ F L+ A + + +AE L M +K FP + ++N ++ G+C
Sbjct: 313 EKN---INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP-DVVAYNTLIKGFCK 368
Query: 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRK 244
E V+ EMSQRG+ + V+++ +I + +AR+ +F QM G+ D
Sbjct: 369 Y-KRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304
YN ++ L V+ A+ + + M+++ + ++VTY ++I+ LCKA K+++ F +
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL 487
Query: 305 LQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361
+G+ P + TY + R G EE L M++ G P + TY LI+ R
Sbjct: 488 SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDE 547
Query: 362 GNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEA 399
++ E+ G D S++ L+ + +G+L+++
Sbjct: 548 AASAELIKEMRSCGFAGDASTF-GLVTNMLHDGRLDKS 584
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
+ DAI L M + P++V ++ L+ + K K D ++M GIS + TY
Sbjct: 56 LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
F++ ++ +L M K+G P+ T L+ F + + +++ E G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD ++T L+H LF + K EA M K P+ T
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVT 217
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/455 (25%), Positives = 199/455 (43%), Gaps = 59/455 (12%)
Query: 9 REFSHKRSEMRNKIEE----CGIKVSSEL-----VSEVLSWV--RNDWEAAFTFFLWAGK 57
R FS KRS M N EE C + S L S+VLS + +++ + F +
Sbjct: 39 RTFSTKRSSM-NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM-E 96
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
G H Y+ +I L + +F A +++ +M P +VT +L I +C +
Sbjct: 97 VCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSL---INGFCQGN 153
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FCNKDVFPFNTKSFN 176
V AI+ + F + + ++ C+ V DA L +D + ++N
Sbjct: 154 RVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYN 213
Query: 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236
++ G C G +A R+ +M R I +V++F+ +I + K + ++L+++M R
Sbjct: 214 SLVAGLC-CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTR 272
Query: 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296
++ D YN++I+ L V +A ++ M KG P+VVTYN+LI CK++++DE
Sbjct: 273 RCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDE 332
Query: 297 ARQAFDEMLQRGI--------------------------------SPTIRTYHAFLDIIR 324
+ F EM QRG+ P IRTY L +
Sbjct: 333 GTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLC 392
Query: 325 TG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN---EISENGNGP 378
E+ L E+M+K + TY ++I + GNV W+ +S G P
Sbjct: 393 MNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCK---IGNVEDAWDLFRSLSCKGLKP 449
Query: 379 DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
D SYT +I + +++ Y +M+E LLP
Sbjct: 450 DVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 128/286 (44%), Gaps = 44/286 (15%)
Query: 138 IEDFQGLLSALCRYKN----VQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR--E 191
I DF +LS + + KN + H+ C + S+NI++N C SR
Sbjct: 69 IVDFSKVLSKIAKSKNYDLVISLFHHMEVCG---IGHDLYSYNIVINCLCR---CSRFVI 122
Query: 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251
A V +M + G DVV+ S +I+ + + + + L +M+ MG D +YN +I
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID 182
Query: 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311
K LV DA+ L ME GV + VTYNSL+ LC + + +A + +M+ R I P
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVP 242
Query: 312 TIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI 371
+ T+ A +D+ F + +F K++ E+
Sbjct: 243 NVITFTAVIDV--------------------------------FVKEGKFSEAMKLYEEM 270
Query: 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+ PD +Y +LI+ L ++G+++EA Q M K LP+ T
Sbjct: 271 TRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVT 316
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 156/340 (45%), Gaps = 15/340 (4%)
Query: 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--- 161
TL I+I +C A + + + F L+ L V +A L+
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184
Query: 162 ---FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY 218
C DV +N+ I+NG C G + A + +M +R + DV ++S II
Sbjct: 185 VENGCQPDVVTYNS-----IVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238
Query: 219 SKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278
+ + + LF +M+ GI+ YN+++ L K D L+K M + + PNV
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298
Query: 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD---IIRTGEEVFGLLES 335
+T+N L+ K KL EA + + EM+ RGISP I TY+ +D + E +L+
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDL 358
Query: 336 MRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395
M + C P T+ LIK + ++ + KV+ IS+ G + +Y+ L+ +GK
Sbjct: 359 MVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418
Query: 396 LEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQI 435
++ A + + EM +LP+ T +L D + +E+ +
Sbjct: 419 IKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 47/405 (11%)
Query: 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL------------- 106
GY T ++T+I L K A L+D M P +VT ++
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212
Query: 107 LILIRR------------YCAVHD-------VGRAINAFYAYKRFKFAVGIEDFQGLLSA 147
L L+R+ Y + D + AI+ F + + + L+
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272
Query: 148 LCRYKNVQDAEHLM--FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC 205
LC+ D L+ ++++ P N +FN++L+ + G +EA ++ EM RGI
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVP-NVITFNVLLDVFVKE-GKLQEANELYKEMITRGIS 330
Query: 206 YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265
++++++ ++ Y L + + D M R D + ++I + V D + +
Sbjct: 331 PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKV 390
Query: 266 MKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIR 324
+++ ++G+ N VTY+ L++ C++ K+ A + F EM+ G+ P + TY LD +
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 325 TG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSS 382
G E+ + E ++K Y +I+ + + + + ++ + G P+ +
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510
Query: 383 YTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYN 427
YT +I L G L EA+ +M+E P D +YN
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEEDGNAP--------NDCTYN 547
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 8/277 (2%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
++ ++ + K K A L EM P+++T TL+ YC + + A N
Sbjct: 301 FNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM---DGYCMQNRLSEANNMLD 357
Query: 128 AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FCNKDVFPFNTKSFNIILNGWCNII 186
R K + I F L+ C K V D + +K N +++I++ G+C
Sbjct: 358 LMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQS- 416
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246
G + AE ++ EM G+ DV+++ ++ L K L +F+ +++ ++ +Y
Sbjct: 417 GKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMY 476
Query: 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306
+I + KG V+DA +L S+ KGV PNV+TY +I LCK L EA +M +
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 307 RGISPTIRTYHAFLDI-IRTGEEVFG--LLESMRKMG 340
G +P TY+ + +R G+ L+E M+ G
Sbjct: 537 DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 17/255 (6%)
Query: 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231
TK FN++L+ +C ++ GI +++ + + +I+C+ + +
Sbjct: 101 TKQFNLVLD-FCK-------------QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVL 146
Query: 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291
++ ++G E D +N +I L V +A+ L+ M E G P+VVTYNS++ +C++
Sbjct: 147 GKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRS 206
Query: 292 RKLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTY 348
A +M +R + + TY +D + R G + L + M G + + TY
Sbjct: 207 GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 266
Query: 349 IMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408
L++ + ++ + + ++ P+ ++ L+ GKL+EA++ Y EM
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326
Query: 409 KQLLPEPKTDELLQD 423
+ + P T L D
Sbjct: 327 RGISPNIITYNTLMD 341
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 103/236 (43%), Gaps = 3/236 (1%)
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250
+A ++ EM + +V FS S ++ + + VL Q++ GI + N +I
Sbjct: 71 DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
+ + A S++ + + G P+ T+N+LIK L K+ EA D M++ G
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 190
Query: 311 PTIRTYHAFLD-IIRTGEE--VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKV 367
P + TY++ ++ I R+G+ LL M + + TY +I R +
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250
Query: 368 WNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
+ E+ G +Y +L+ L GK + +M ++++P T +L D
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLD 306
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/416 (23%), Positives = 182/416 (43%), Gaps = 81/416 (19%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
+++G + R + M+ L K +K D A A+ +EM P +T +C++
Sbjct: 404 QKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEIT----------FCSL 453
Query: 117 HD----VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV--------------QDAE 158
D VGR +A+ Y++ +L + CR ++ ++
Sbjct: 454 IDGLGKVGRVDDAYKVYEK------------MLDSDCRTNSIVYTSLIKNFFNHGRKEDG 501
Query: 159 HLMF-------CNKDVFPFNT------------------------------KSFNIILNG 181
H ++ C+ D+ NT +S++I+++G
Sbjct: 502 HKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHG 561
Query: 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241
G + E ++ M ++G D +++ +I + K ++K +L ++MK G E
Sbjct: 562 LIKA-GFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301
Y +VI LAK + +A L + + K + NVV Y+SLI K ++DEA
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLIL 680
Query: 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLL---ESMRKMGCQPTNDTYIMLIKKFSRW 358
+E++Q+G++P + T+++ LD + EE+ L +SM+++ C P TY +LI +
Sbjct: 681 EELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKV 740
Query: 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
R+F F W E+ + G P SYT +I L G + EA + K +P+
Sbjct: 741 RKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 174/372 (46%), Gaps = 15/372 (4%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
++ GY + + T+I K + D+A +L+DEM+ +V + I + V
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYN---VCIDSFGKV 251
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDA----EHLMFCNKDVFPFNT 172
V A F+ + + ++ LC+ + +A EHL K+ T
Sbjct: 252 GKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL---EKNRRVPCT 308
Query: 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFD 232
++N ++ G+ + G EA + +G V++++CI++C K + + L++F+
Sbjct: 309 YAYNTMIMGYGSA-GKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367
Query: 233 QMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292
+MK+ + YN +I L + + A L SM++ G+ PNV T N ++ LCK++
Sbjct: 368 EMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426
Query: 293 KLDEARQAFDEMLQRGISPTIRTYHAFLD-IIRTG--EEVFGLLESMRKMGCQPTNDTYI 349
KLDEA F+EM + +P T+ + +D + + G ++ + + E M C+ + Y
Sbjct: 427 KLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYT 486
Query: 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409
LIK F + + K++ ++ PD + +F G+ E+ + E+K +
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKAR 546
Query: 410 QLLPEPKTDELL 421
+ +P+ ++ +L
Sbjct: 547 RFVPDARSYSIL 558
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/409 (22%), Positives = 169/409 (41%), Gaps = 47/409 (11%)
Query: 20 NKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR 79
N + K E V VL ++ D A +F W +++ H Y++++ ++ + R
Sbjct: 54 NTLSALSFKPQPEFVIGVLRRLK-DVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCR 112
Query: 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139
FD ++ EM GPS+ T + ++ + + + ++FKF
Sbjct: 113 NFDALDQILGEMSVAGFGPSV---NTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFS 169
Query: 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199
+ L+ A + V ++ ++ ++ +M
Sbjct: 170 AYTTLIGA---FSAVNHSDMML--------------------------------TLFQQM 194
Query: 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259
+ G V F+ +I ++K + L L D+MK ++ D +YN I + K V
Sbjct: 195 QELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKV 254
Query: 260 KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF 319
A +E G+ P+ VTY S+I LCKA +LDEA + F+ + + P Y+
Sbjct: 255 DMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTM 314
Query: 320 LDIIRTG-----EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374
I+ G +E + LLE R G P+ Y ++ + + KV+ E+ ++
Sbjct: 315 --IMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKD 372
Query: 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
P+ S+Y LI L GKL+ A + M++ L P +T ++ D
Sbjct: 373 A-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVD 420
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 132/302 (43%), Gaps = 10/302 (3%)
Query: 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120
+ R Y +I L K + + L M+ E G L T+ I+I +C V
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMK--EQGCVLDTR-AYNIVIDGFCKCGKVN 604
Query: 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF--CNKDVFPFNTKSFNII 178
+A K F + + ++ L + + +A +++F N ++ +
Sbjct: 605 KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA-YMLFEEAKSKRIELNVVIYSSL 663
Query: 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238
++G+ +G EA + E+ Q+G+ ++ +++ ++ KA +++ L F MK +
Sbjct: 664 IDGF-GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298
++ Y +I+ L K R A + M+++G+ P+ ++Y ++I L KA + EA
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782
Query: 299 QAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKF 355
FD G P Y+A ++ + G + F L E R+ G N T ++L+
Sbjct: 783 ALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842
Query: 356 SR 357
+
Sbjct: 843 HK 844
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 17/248 (6%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
K G+ + Y ++I L K+ + D A+ L +E + ++V +L+
Sbjct: 614 KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID------GF 667
Query: 117 HDVGRAINAFYAYKRF---KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF--- 170
VGR A+ + + + LL AL + + + +A + C + +
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEA---LVCFQSMKELKCT 724
Query: 171 -NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLR 229
N ++ I++NG C + ++ A W EM ++G+ +S++ +IS +KA N+ +
Sbjct: 725 PNQVTYGILINGLCKVRKFNK-AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783
Query: 230 LFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289
LFD+ K G D YNA+I L+ G DA SL + +G+ + T L+ L
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLH 843
Query: 290 KARKLDEA 297
K L++A
Sbjct: 844 KNDCLEQA 851
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 119/276 (43%), Gaps = 11/276 (3%)
Query: 52 FLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIR 111
++ K+ G TR Y+ +I K K + A+ L++EM+ P++VT ++ I
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSV---ID 630
Query: 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDA----EHLMFCNKDV 167
+ + A F K + + + + L+ + + +A E LM K +
Sbjct: 631 GLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELM--QKGL 688
Query: 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKV 227
P N ++N +L+ EA + M + + V++ +I+ K R +K
Sbjct: 689 TP-NLYTWNSLLDALVKA-EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKA 746
Query: 228 LRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKP 287
+ +M++ G++ Y +I LAK + +A +L + G P+ YN++I+
Sbjct: 747 FVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEG 806
Query: 288 LCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII 323
L + +A F+E +RG+ +T LD +
Sbjct: 807 LSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 17/351 (4%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFY 127
Y+ M+ + + KF A L+D MR P L++ T LI R A+
Sbjct: 228 YNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNT-LINARLKSGGLTPNLAVELLD 286
Query: 128 AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM------FCNKDVFPFNTKSFNIILNG 181
+ + LLSA R N+ A + C D++ +N I + G
Sbjct: 287 MVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAM---ISVYG 343
Query: 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241
C G + EAER++ME+ +G D V+++ ++ +++ RN KV ++ QM++MG
Sbjct: 344 RC---GLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400
Query: 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEE-KGVAPNVVTYNSLIKPLCKARKLDEARQA 300
D YN +IH K + A+ L K M+ G P+ +TY LI L KA + EA
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 301 FDEMLQRGISPTIRTYHAFL-DIIRTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSR 357
EML GI PT++TY A + + G EE M + G +P N Y +++ R
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520
Query: 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408
+ + ++ ++ +G+ P + Y +I L + ++ + +M+E
Sbjct: 521 GNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEE 571
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 124/275 (45%), Gaps = 7/275 (2%)
Query: 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRL 230
+S NI+L+ C + G E V E+ G S ++ +++A N+ +V ++
Sbjct: 821 TVESINILLHALC-VDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKI 879
Query: 231 FDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290
+ MK G ++Y +I L KG+ V+DA ++ MEE + +NS++K
Sbjct: 880 YSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTA 939
Query: 291 ARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDT 347
+ Q + + + G+ P TY+ + + R EE + L++ MR +G P DT
Sbjct: 940 IEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDT 999
Query: 348 YIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMK 407
Y LI F + + +++ E+ G DRS Y ++ +G +A + MK
Sbjct: 1000 YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059
Query: 408 EKQLLPEPKTDELLQ---DWSYNKQFVERQIASLK 439
+ P T LL S N Q E+ +++LK
Sbjct: 1060 NAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLK 1094
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 160/362 (44%), Gaps = 8/362 (2%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
+QSG + ++++++ + ++ A A+ + M GPS T +++ IL+ C
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM--RDGPS-PTVESINILLHALCVD 835
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNT-KSF 175
+ + F + +L A R N+ + + + K T + +
Sbjct: 836 GRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLY 895
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+++ C R+AE + EM + ++ ++ ++ Y+ + K ++++ ++K
Sbjct: 896 RMMIELLCKG-KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIK 954
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
G+E D YN +I + R ++ LM+ M G+ P + TY SLI K + L+
Sbjct: 955 ETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLE 1014
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDIIR---TGEEVFGLLESMRKMGCQPTNDTYIMLI 352
+A Q F+E+L +G+ YH + I R + + LL+ M+ G +PT T +L+
Sbjct: 1015 QAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLM 1074
Query: 353 KKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412
+S KV + + + Y+++I A + + +EMK++ L
Sbjct: 1075 VSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLE 1134
Query: 413 PE 414
P+
Sbjct: 1135 PD 1136
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 6/237 (2%)
Query: 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVL--RLFDQMKRMGIECDRK 244
G +A+ + M QRG D++SF+ +I+ K+ L L L D ++ G+ D
Sbjct: 239 GKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAI 298
Query: 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304
YN ++ A ++ + A+ + + ME P++ TYN++I + EA + F E+
Sbjct: 299 TYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMEL 358
Query: 305 LQRGISPTIRTYHAFLDII---RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361
+G P TY++ L R E+V + + M+KMG TY +I + + Q
Sbjct: 359 ELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQL 418
Query: 362 GNVFKVWNEISE-NGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+++ ++ +G PD +YT LI +L + EA EM + + P +T
Sbjct: 419 DLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQT 475
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 132/349 (37%), Gaps = 57/349 (16%)
Query: 29 VSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALI 88
++ L E+L VRN SG Y+T+++ + D A +
Sbjct: 276 LTPNLAVELLDMVRN---------------SGLRPDAITYNTLLSACSRDSNLDGAVKVF 320
Query: 89 DEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSAL 148
++M P L T ++ + R + R F AV + LL A
Sbjct: 321 EDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAV---TYNSLLYAF 377
Query: 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV 208
R +N + + + V+ +M + G D
Sbjct: 378 ARERNTE-----------------------------------KVKEVYQQMQKMGFGKDE 402
Query: 209 VSFSCIISCYSKARNLHKVLRLFDQMKRM-GIECDRKVYNAVIHALAKGRLVKDAISLMK 267
++++ II Y K L L+L+ MK + G D Y +I +L K +A +LM
Sbjct: 403 MTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMS 462
Query: 268 SMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327
M + G+ P + TY++LI KA K +EA F ML+ G P Y LD++ G
Sbjct: 463 EMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGN 522
Query: 328 EV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373
E +GL M G P+ Y ++I + + ++ K ++ E
Sbjct: 523 ETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEE 571
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 5/246 (2%)
Query: 174 SFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSFSCIISCYSKARNLHKVLRLFD 232
SFN ++N G + ++M + G+ D ++++ ++S S+ NL +++F+
Sbjct: 262 SFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFE 321
Query: 233 QMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292
M+ + D YNA+I + L +A L +E KG P+ VTYNSL+ + R
Sbjct: 322 DMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARER 381
Query: 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM----GCQPTNDTY 348
++ ++ + +M + G TY+ + + ++ L+ + M G P TY
Sbjct: 382 NTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITY 441
Query: 349 IMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408
+LI + + + +E+ + G P +Y+ALI GK EEA + M
Sbjct: 442 TVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLR 501
Query: 409 KQLLPE 414
P+
Sbjct: 502 SGTKPD 507
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 115/255 (45%), Gaps = 32/255 (12%)
Query: 179 LNGWCNIIGSSR----------------EAERVWMEMSQRG------ICYDVVSFSCIIS 216
++GWC GSS EA +V+ ++ G +C +V C +
Sbjct: 673 VHGWC--FGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLG 730
Query: 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276
A H+V+ + K C +Y +I A K +L + A S++ ++ + G P
Sbjct: 731 FPETA---HQVVNQ-AETKGFHFACS-PMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTP 785
Query: 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLL 333
++ T+NSL+ + + AR F+ M++ G SPT+ + + L + EE++ ++
Sbjct: 786 DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845
Query: 334 ESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLN 393
E ++ MG + + + ++++ F+R V K+++ + G P Y +I L
Sbjct: 846 EELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905
Query: 394 GKLEEAHQYYMEMKE 408
++ +A EM+E
Sbjct: 906 KRVRDAEIMVSEMEE 920
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 5/170 (2%)
Query: 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE--ARQAF 301
+VYNA++ ++ A L+ +M ++G P+++++N+LI K+ L A +
Sbjct: 226 QVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELL 285
Query: 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFG---LLESMRKMGCQPTNDTYIMLIKKFSRW 358
D + G+ P TY+ L + G + E M CQP TY +I + R
Sbjct: 286 DMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRC 345
Query: 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408
+++ E+ G PD +Y +L++A E+ + Y +M++
Sbjct: 346 GLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQK 395
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 106/232 (45%), Gaps = 5/232 (2%)
Query: 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249
++AE V + Q G D+ +++ ++S Y++ + +F+ M R G + N +
Sbjct: 769 QKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINIL 828
Query: 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309
+HAL +++ +++ +++ G + + ++ +A + E ++ + M G
Sbjct: 829 LHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGY 888
Query: 310 SPTIRTYHAFLDIIRTGEEVFG---LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFK 366
PTIR Y ++++ G+ V ++ M + + + ++K ++ + +
Sbjct: 889 LPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQ 948
Query: 367 VWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTD 418
V+ I E G PD ++Y LI + + EE + +M+ L +PK D
Sbjct: 949 VYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGL--DPKLD 998
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 271 EKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI-IRTG--- 326
E V V YN+++ ++ K +A++ D M QRG P + +++ ++ +++G
Sbjct: 218 EPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLT 277
Query: 327 -EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTA 385
LL+ +R G +P TY L+ SR KV+ ++ + PD +Y A
Sbjct: 278 PNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNA 337
Query: 386 LIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
+I G EA + +ME++ K P+ T
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVT 369
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/220 (18%), Positives = 98/220 (44%), Gaps = 9/220 (4%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
K++G Y+T+I + + R+ + + L+ +MR P L T ++L+ + +
Sbjct: 954 KETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCL 1013
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD-AEHL--MFCNKDVFPFNTK 173
+ + K K F + + R AE L M N + P
Sbjct: 1014 EQAEQLFEELLS-KGLKLD---RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEP-TLA 1068
Query: 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233
+ ++++ + + G+ +EAE+V + + + +S +I Y ++++ + + +
Sbjct: 1069 TMHLLMVSYSSS-GNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLE 1127
Query: 234 MKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273
MK+ G+E D +++ + A + + + + L+K++E+ G
Sbjct: 1128 MKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIG 1167
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 32/361 (8%)
Query: 7 ILREF--SHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHS 64
ILR F H E + G ++ + ++VL + N + A FF W +Q G+ H
Sbjct: 303 ILRRFKWGHAAEE---ALHNFGFRMDAYQANQVLKQMDN-YANALGFFYWLKRQPGFKHD 358
Query: 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAIN 124
Y TM+ LG+ ++F L+DEM P+ VT L I Y + + A+N
Sbjct: 359 GHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRL---IHSYGRANYLKEAMN 415
Query: 125 AFYAYKR---------FKFAVGIEDFQGLLS-ALCRYKNVQDAEHLMFCNKDVFPFNTKS 174
F + + + I G L A+ Y+ +Q+A + D F +
Sbjct: 416 VFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG----LSPDTF-----T 466
Query: 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234
+++I+N G A R++ EM +G ++V+F+ +I+ ++KARN L+L+ M
Sbjct: 467 YSVIIN-CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDM 525
Query: 235 KRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294
+ G + D+ Y+ V+ L +++A + M+ K P+ Y L+ KA +
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNV 585
Query: 295 DEARQAFDEMLQRGISPTIRTYHAFLDI---IRTGEEVFGLLESMRKMGCQPTNDTYIML 351
D+A Q + MLQ G+ P + T ++ L + E + LL+SM +G P+ TY +L
Sbjct: 586 DKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLL 645
Query: 352 I 352
+
Sbjct: 646 L 646
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 3/226 (1%)
Query: 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260
Q G +D +++ ++ +A+ ++ +L D+M R G + + YN +IH+ + +K
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK 411
Query: 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL 320
+A+++ M+E G P+ VTY +LI KA LD A + M + G+SP TY +
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVII 471
Query: 321 DIIRTGEEVFG---LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377
+ + + L M GC P T+ ++I ++ R + K++ ++ G
Sbjct: 472 NCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQ 531
Query: 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423
PD+ +Y+ ++ L G LEEA + EM+ K +P+ LL D
Sbjct: 532 PDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVD 577
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 113/238 (47%), Gaps = 4/238 (1%)
Query: 191 EAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250
E ++ EM + G + V+++ +I Y +A L + + +F+QM+ G E DR Y +I
Sbjct: 377 EINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLI 436
Query: 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310
AK + A+ + + M+E G++P+ TY+ +I L KA L A + F EM+ +G +
Sbjct: 437 DIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCT 496
Query: 311 PTIRTYHAFLDI---IRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKV 367
P + T++ + + R E L M+ G QP TY ++++ V
Sbjct: 497 PNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGV 556
Query: 368 WNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE-PKTDELLQDW 424
+ E+ PD Y L+ G +++A Q+Y M + L P P + LL +
Sbjct: 557 FAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTF 614
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 166/363 (45%), Gaps = 18/363 (4%)
Query: 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123
S E++ +++ + K+ KF+ +L ++M+ L T I I +C + A+
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS---IFINCFCRRSQLSLAL 138
Query: 124 NAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL------MFCNKDVFPFNTKSFNI 177
+ + I LL+ C K + DA L M D F F T +
Sbjct: 139 AVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGL 198
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
L+ + EA + +M QRG D+V++ +++ K ++ L L ++M+
Sbjct: 199 FLHN------KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAA 252
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
I+ + ++N +I +L K R V+ A+ L ME KG+ PNVVTYNSLI LC + +A
Sbjct: 253 RIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDA 312
Query: 298 RQAFDEMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIKK 354
+ ML++ I+P + T++A +D + G+ E L E M + P TY +LI
Sbjct: 313 SRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLING 372
Query: 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
F + +++ + P+ +Y LI+ ++E+ + + EM ++ L+
Sbjct: 373 FCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGN 432
Query: 415 PKT 417
T
Sbjct: 433 TVT 435
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 170/401 (42%), Gaps = 50/401 (12%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
+ GY T + T+I L K A AL+D+M P LVT T+ + C
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTV---VNGLCKRG 237
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM--FCNKDVFPFNTKSF 175
D+ A+N + + + F ++ +LC+Y++V+ A L K + P N ++
Sbjct: 238 DIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP-NVVTY 296
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
N ++N CN G +A R+ M ++ I +VV+F+ +I + K L + +L ++M
Sbjct: 297 NSLINCLCNY-GRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMI 355
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
+ I+ D YN +I+ + +A + K M K PN+ TYN+LI CK ++++
Sbjct: 356 QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVE 415
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDII------RTGEEVFGLLESMRKMGCQPTN---- 345
+ + F EM QRG+ TY + + + VF + S R PT+
Sbjct: 416 DGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR----VPTDIMTY 471
Query: 346 -------------DTYIMLIKKFSRWRQFGNVF----------------KVWNEISENGN 376
DT +++ K + N+F + W+
Sbjct: 472 SILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSI 531
Query: 377 GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD +Y +I L L+EA + +MKE LP T
Sbjct: 532 KPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGT 572
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 164/369 (44%), Gaps = 43/369 (11%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA----- 122
++T+I L K R + A L EM P++VT +L+ + Y D R
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 123 --------------INAFYAYKRFKFAVGIED-------------FQGLLSALCRYKNVQ 155
I+AF+ + A + + + L++ C + +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 156 DAEHLM--FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213
+A+ + +KD P N +++N ++NG+C + ++ EMSQRG+ + V+++
Sbjct: 381 EAKQMFKFMVSKDCLP-NIQTYNTLINGFCKC-KRVEDGVELFREMSQRGLVGNTVTYTT 438
Query: 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273
II + +A + +F QM + D Y+ ++H L + A+ + K +++
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498
Query: 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII---RTGEEVF 330
+ N+ YN++I+ +CKA K+ EA F + I P + TY+ + + R +E
Sbjct: 499 MELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEAD 555
Query: 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHAL 390
L M++ G P + TY LI+ R ++ E+ +G D S+ +L+ +
Sbjct: 556 DLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDAST-ISLVTNM 614
Query: 391 FLNGKLEEA 399
+G+L+++
Sbjct: 615 LHDGRLDKS 623
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318
V DA+ L M + P++V +N L+ + K K + ++M GIS + TY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123
Query: 319 FLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375
F++ ++ +L M K+G +P T L+ + ++ + + +++ E G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417
PD ++T LIH LFL+ K EA +M ++ P+ T
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVT 225
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 175/400 (43%), Gaps = 23/400 (5%)
Query: 34 VSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRG 93
V VL ++ D + AF FF W+ ++G+ HS Y + IL R + A +++ EM
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170
Query: 94 GETGPSL---------VTKQTLLILIRRYCAVHDVG---RAINAFYAYKRFKFAVGIEDF 141
+ + V + + + D+G AI F KRF+
Sbjct: 171 SKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSC 230
Query: 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK----SFNIILNGWCNIIGSSREAERVWM 197
GLL + D + KD+ + ++NI+++ C G A ++
Sbjct: 231 NGLLHRFAKLGKTDDVKRFF---KDMIGAGARPTVFTYNIMIDCMCKE-GDVEAARGLFE 286
Query: 198 EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR 257
EM RG+ D V+++ +I + K L + F++MK M E D YNA+I+ K
Sbjct: 287 EMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346
Query: 258 LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYH 317
+ + + M+ G+ PNVV+Y++L+ CK + +A + + +M + G+ P TY
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406
Query: 318 AFLDI---IRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374
+ +D I + F L M ++G + TY LI + +++ ++
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466
Query: 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414
G P+ +SY ALIH ++ A + E+K + + P+
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/405 (23%), Positives = 184/405 (45%), Gaps = 10/405 (2%)
Query: 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116
K G T Y++MI GKV + D +EM+ P ++T L I +C
Sbjct: 289 KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL---INCFCKF 345
Query: 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSF 175
+ + + K + + L+ A C+ +Q A + V N ++
Sbjct: 346 GKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTY 405
Query: 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235
+++ C I G+ +A R+ EM Q G+ ++VV+++ +I A + + LF +M
Sbjct: 406 TSLIDANCKI-GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMD 464
Query: 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
G+ + YNA+IH K + + A+ L+ ++ +G+ P+++ Y + I LC K++
Sbjct: 465 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIE 524
Query: 296 EARQAFDEMLQRGISPTIRTYHAFLDI-IRTGEEVFGL--LESMRKMGCQPTNDTYIMLI 352
A+ +EM + GI Y +D ++G GL L+ M+++ + T T+ +LI
Sbjct: 525 AAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLI 584
Query: 353 KKFSRWRQFGNVFKVWNEISEN-GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQL 411
+ + +N IS + G + + +TA+I L + ++E A + +M +K L
Sbjct: 585 DGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644
Query: 412 LPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKS 456
+P+ L D ++ + V +A L+ + G +++ S
Sbjct: 645 VPDRTAYTSLMDGNFKQGNVLEALA-LRDKMAEIGMKLDLLAYTS 688
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 139/301 (46%), Gaps = 20/301 (6%)
Query: 128 AYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN-GWCNII 186
A+K FK+++ F+ + + C H++FC + + N+ ++L+ C++
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCI------VAHILFCARMYYDANSVLKEMVLSKADCDVF 178
Query: 187 GSSREAERVWMEMSQRGICYDVVS-FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245
+ +W S R +C F + S L + ++ F +MKR + +
Sbjct: 179 ------DVLW---STRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRS 229
Query: 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305
N ++H AK D K M G P V TYN +I +CK ++ AR F+EM
Sbjct: 230 CNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 289
Query: 306 QRGISPTIRTYHAFLDII-RTG--EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFG 362
RG+ P TY++ +D + G ++ E M+ M C+P TY LI F ++ +
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 349
Query: 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422
+ + E+ NG P+ SY+ L+ A G +++A ++Y++M+ L+P T L
Sbjct: 350 IGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLI 409
Query: 423 D 423
D
Sbjct: 410 D 410
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/427 (22%), Positives = 164/427 (38%), Gaps = 77/427 (18%)
Query: 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL----------IRRYCAVH 117
Y+ +I K K EM+G P++V+ TL+ I+ Y +
Sbjct: 335 YNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394
Query: 118 DVGRAINAFYAYKRFKFA-------------------VGIE----DFQGLLSALCRYKNV 154
VG N Y Y A VG+E + L+ LC + +
Sbjct: 395 RVGLVPNE-YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERM 453
Query: 155 QDAEHLMFCNKD---VFPFNTKSFNIILNGWCNIIGSSR--------------------- 190
++AE L F D V P N S+N +++G+ R
Sbjct: 454 KEAEEL-FGKMDTAGVIP-NLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYG 511
Query: 191 ------------EAERVWM-EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
EA +V M EM + GI + + ++ ++ Y K+ N + L L D+MK +
Sbjct: 512 TFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKEL 571
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK-GVAPNVVTYNSLIKPLCKARKLDE 296
IE + +I L K +LV A+ + G+ N + ++I LCK +++
Sbjct: 572 DIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEA 631
Query: 297 ARQAFDEMLQRGISPTIRTYHAFLD-IIRTGE--EVFGLLESMRKMGCQPTNDTYIMLIK 353
A F++M+Q+G+ P Y + +D + G E L + M ++G + Y L+
Sbjct: 632 ATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVW 691
Query: 354 KFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413
S Q E+ G PD +++ + G ++EA + + + QLL
Sbjct: 692 GLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLT 751
Query: 414 EPKTDEL 420
+ L
Sbjct: 752 SDNDNAL 758
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 4/254 (1%)
Query: 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD 118
+G + Y+ +I K + D A L++E++G P L+ T I C++
Sbjct: 466 AGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF---IWGLCSLEK 522
Query: 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNI 177
+ A K + L+ A + N + HL+ K++ +F +
Sbjct: 523 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCV 582
Query: 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237
+++G C S+ + + G+ + F+ +I K + LF+QM +
Sbjct: 583 LIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQK 642
Query: 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297
G+ DR Y +++ K V +A++L M E G+ +++ Y SL+ L +L +A
Sbjct: 643 GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKA 702
Query: 298 RQAFDEMLQRGISP 311
R +EM+ GI P
Sbjct: 703 RSFLEEMIGEGIHP 716
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 123/302 (40%), Gaps = 9/302 (2%)
Query: 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH 117
Q G + Y +I L + A L +M P+L + L I +
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNAL---IHGFVKAK 486
Query: 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFN 176
++ RA+ K + + + LC + ++ A+ +M K+ N+ +
Sbjct: 487 NMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYT 546
Query: 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236
+++ + G+ E + EM + I VV+F +I K + + K + F+++
Sbjct: 547 TLMDAYFKS-GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 605
Query: 237 -MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295
G++ + ++ A+I L K V+ A +L + M +KG+ P+ Y SL+ K +
Sbjct: 606 DFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVL 665
Query: 296 EARQAFDEMLQRGISPTIRTYHAF---LDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLI 352
EA D+M + G+ + Y + L ++ LE M G P I ++
Sbjct: 666 EALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVL 725
Query: 353 KK 354
KK
Sbjct: 726 KK 727
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,648,869
Number of Sequences: 539616
Number of extensions: 7227720
Number of successful extensions: 24037
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 17345
Number of HSP's gapped (non-prelim): 2749
length of query: 481
length of database: 191,569,459
effective HSP length: 121
effective length of query: 360
effective length of database: 126,275,923
effective search space: 45459332280
effective search space used: 45459332280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)