Query 042941
Match_columns 481
No_of_seqs 528 out of 3223
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 11:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-62 5.5E-67 489.2 52.8 441 29-477 435-911 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.7E-61 8.1E-66 480.9 54.4 411 7-426 379-800 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.1E-62 1.5E-66 494.9 45.1 458 4-481 158-732 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4.7E-62 1E-66 484.8 41.2 457 5-481 94-569 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3E-57 6.5E-62 461.1 41.6 440 18-473 108-652 (857)
6 PLN03081 pentatricopeptide (PP 100.0 6E-56 1.3E-60 441.2 44.0 420 4-444 129-557 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-24 4.6E-29 225.1 48.8 414 43-472 445-863 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-24 4.4E-29 225.2 48.5 441 14-473 449-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 9.7E-22 2.1E-26 184.1 34.8 303 72-416 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 177.0 34.4 294 20-322 26-324 (389)
11 PRK11447 cellulose synthase su 99.9 1.2E-17 2.5E-22 175.5 43.8 417 42-472 282-737 (1157)
12 PRK15174 Vi polysaccharide exp 99.9 2.4E-17 5.1E-22 162.1 42.6 321 43-409 56-381 (656)
13 PRK15174 Vi polysaccharide exp 99.8 3.4E-17 7.4E-22 161.0 38.9 336 65-445 42-385 (656)
14 TIGR00990 3a0801s09 mitochondr 99.8 8E-17 1.7E-21 158.9 40.6 384 43-440 141-567 (615)
15 PRK11447 cellulose synthase su 99.8 9.5E-16 2.1E-20 161.2 47.0 411 14-441 287-737 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 2.5E-17 5.4E-22 148.5 26.3 374 64-455 115-499 (966)
17 PRK10049 pgaA outer membrane p 99.8 5.1E-15 1.1E-19 148.9 46.1 408 27-450 11-465 (765)
18 KOG4626 O-linked N-acetylgluco 99.8 1.4E-16 3E-21 143.7 30.0 412 42-471 61-481 (966)
19 TIGR00990 3a0801s09 mitochondr 99.8 1E-14 2.2E-19 144.1 44.6 382 14-409 145-571 (615)
20 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.6E-19 124.3 39.9 430 4-443 122-624 (625)
21 PRK10049 pgaA outer membrane p 99.8 4.2E-15 9E-20 149.5 38.9 398 63-474 13-455 (765)
22 PRK14574 hmsH outer membrane p 99.8 3.7E-13 7.9E-18 133.3 46.6 401 34-449 39-521 (822)
23 PRK14574 hmsH outer membrane p 99.7 6.8E-14 1.5E-18 138.3 39.9 194 66-268 35-228 (822)
24 PRK09782 bacteriophage N4 rece 99.7 3E-12 6.6E-17 129.5 47.0 407 44-471 162-702 (987)
25 KOG4422 Uncharacterized conser 99.7 8.5E-13 1.9E-17 114.5 35.2 386 31-424 116-567 (625)
26 PRK10747 putative protoheme IX 99.7 1.3E-12 2.8E-17 121.4 34.1 284 78-408 97-389 (398)
27 TIGR00540 hemY_coli hemY prote 99.6 2.4E-12 5.3E-17 120.3 33.8 292 77-408 96-398 (409)
28 PRK09782 bacteriophage N4 rece 99.6 2.6E-11 5.7E-16 122.8 42.6 431 4-462 319-760 (987)
29 KOG2002 TPR-containing nuclear 99.6 1.4E-11 3E-16 117.6 37.9 408 45-467 146-585 (1018)
30 COG2956 Predicted N-acetylgluc 99.6 8.2E-12 1.8E-16 104.6 29.6 235 68-309 39-280 (389)
31 KOG2002 TPR-containing nuclear 99.6 4.9E-11 1.1E-15 114.0 37.4 380 67-455 309-759 (1018)
32 COG2956 Predicted N-acetylgluc 99.6 1.3E-11 2.8E-16 103.5 29.5 286 28-323 34-325 (389)
33 PF13429 TPR_15: Tetratricopep 99.6 9.2E-15 2E-19 129.8 11.9 227 71-305 14-241 (280)
34 PF13429 TPR_15: Tetratricopep 99.6 5.7E-15 1.2E-19 131.1 10.5 254 42-306 21-276 (280)
35 KOG2076 RNA polymerase III tra 99.6 1.1E-10 2.3E-15 110.9 37.3 357 75-439 149-550 (895)
36 COG3071 HemY Uncharacterized e 99.6 5.1E-11 1.1E-15 103.0 31.9 287 116-414 97-395 (400)
37 PRK10747 putative protoheme IX 99.6 1.2E-11 2.7E-16 114.9 30.4 283 31-329 86-377 (398)
38 KOG2003 TPR repeat-containing 99.6 1.6E-10 3.4E-15 101.5 34.7 147 281-431 561-710 (840)
39 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.6E-15 109.0 34.6 301 30-373 85-398 (409)
40 KOG0495 HAT repeat protein [RN 99.5 1.1E-09 2.4E-14 100.5 39.1 444 14-473 394-878 (913)
41 KOG2076 RNA polymerase III tra 99.5 3.5E-10 7.7E-15 107.5 35.5 325 112-442 148-510 (895)
42 KOG0495 HAT repeat protein [RN 99.5 1.2E-08 2.6E-13 93.9 43.6 413 29-461 377-802 (913)
43 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.5E-16 113.7 24.2 284 118-413 334-624 (638)
44 KOG1126 DNA-binding cell divis 99.5 1.9E-11 4.2E-16 112.3 25.1 266 44-326 334-604 (638)
45 PRK12370 invasion protein regu 99.4 2.8E-10 6.1E-15 110.6 29.2 215 81-305 277-500 (553)
46 KOG1155 Anaphase-promoting com 99.4 9.1E-09 2E-13 90.9 35.1 357 62-438 161-530 (559)
47 COG3071 HemY Uncharacterized e 99.4 2.8E-09 6E-14 92.5 31.0 252 43-307 132-390 (400)
48 KOG1155 Anaphase-promoting com 99.4 9.6E-10 2.1E-14 96.9 28.1 263 33-306 232-494 (559)
49 KOG2003 TPR repeat-containing 99.4 8.5E-10 1.8E-14 97.0 26.8 194 256-454 503-699 (840)
50 PRK12370 invasion protein regu 99.4 4.9E-10 1.1E-14 109.0 28.0 251 44-308 276-536 (553)
51 TIGR02521 type_IV_pilW type IV 99.4 6.6E-10 1.4E-14 96.2 25.1 198 105-306 33-231 (234)
52 KOG4318 Bicoid mRNA stability 99.4 6.8E-10 1.5E-14 105.3 25.9 255 14-292 8-285 (1088)
53 KOG1915 Cell cycle control pro 99.4 1E-07 2.3E-12 84.6 37.7 392 46-453 90-547 (677)
54 TIGR02521 type_IV_pilW type IV 99.4 6.9E-10 1.5E-14 96.0 24.7 202 63-272 29-232 (234)
55 KOG0547 Translocase of outer m 99.4 2.8E-09 6.1E-14 94.7 27.6 75 43-124 129-204 (606)
56 PF13041 PPR_2: PPR repeat fam 99.3 4E-12 8.7E-17 79.2 6.7 49 276-324 1-49 (50)
57 KOG4318 Bicoid mRNA stability 99.3 1.9E-10 4.2E-15 108.9 19.9 79 342-423 201-279 (1088)
58 PF13041 PPR_2: PPR repeat fam 99.3 5E-12 1.1E-16 78.8 6.6 48 206-253 1-48 (50)
59 PF12569 NARP1: NMDA receptor- 99.3 2.9E-08 6.3E-13 93.5 32.9 289 73-406 12-331 (517)
60 KOG1156 N-terminal acetyltrans 99.3 2E-07 4.2E-12 86.2 36.4 397 24-440 36-464 (700)
61 KOG1173 Anaphase-promoting com 99.3 3.8E-08 8.2E-13 89.3 30.9 288 103-424 244-531 (611)
62 KOG1129 TPR repeat-containing 99.3 1.8E-09 3.9E-14 91.0 19.4 231 142-409 227-458 (478)
63 KOG1915 Cell cycle control pro 99.2 8.2E-07 1.8E-11 79.2 35.4 351 44-409 156-536 (677)
64 KOG1129 TPR repeat-containing 99.2 2.2E-09 4.7E-14 90.5 16.9 229 69-307 227-458 (478)
65 KOG1173 Anaphase-promoting com 99.2 6.6E-08 1.4E-12 87.8 27.2 289 60-391 239-533 (611)
66 KOG1156 N-terminal acetyltrans 99.2 7.8E-07 1.7E-11 82.4 33.2 427 32-476 9-469 (700)
67 KOG1840 Kinesin light chain [C 99.2 1.4E-07 3E-12 88.0 29.0 242 103-373 199-478 (508)
68 KOG0547 Translocase of outer m 99.1 1.1E-08 2.4E-13 91.0 20.2 152 42-201 339-490 (606)
69 PF12569 NARP1: NMDA receptor- 99.1 6.8E-07 1.5E-11 84.4 33.4 254 42-309 17-293 (517)
70 cd05804 StaR_like StaR_like; a 99.1 7.5E-07 1.6E-11 82.5 33.7 196 213-409 119-336 (355)
71 KOG4162 Predicted calmodulin-b 99.1 3.3E-07 7.1E-12 86.4 29.4 398 59-467 317-775 (799)
72 KOG1840 Kinesin light chain [C 99.1 9.1E-08 2E-12 89.2 25.2 243 139-407 200-477 (508)
73 KOG1174 Anaphase-promoting com 99.1 1.8E-06 4E-11 75.7 30.5 291 114-415 207-504 (564)
74 PRK11189 lipoprotein NlpI; Pro 99.1 3.5E-07 7.5E-12 81.6 27.4 221 79-308 40-266 (296)
75 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-07 3.5E-12 83.7 25.2 226 44-282 41-274 (296)
76 KOG1174 Anaphase-promoting com 99.1 2.4E-06 5.3E-11 74.9 30.8 263 103-375 232-501 (564)
77 KOG2047 mRNA splicing factor [ 99.1 1.3E-05 2.7E-10 74.5 39.2 245 50-305 123-452 (835)
78 COG3063 PilF Tfp pilus assembl 99.1 3.6E-07 7.7E-12 73.8 23.1 198 105-306 37-235 (250)
79 KOG4340 Uncharacterized conser 99.0 1.3E-07 2.8E-12 79.1 20.4 325 68-407 13-373 (459)
80 COG3063 PilF Tfp pilus assembl 99.0 5.9E-07 1.3E-11 72.6 23.1 199 66-272 36-236 (250)
81 cd05804 StaR_like StaR_like; a 99.0 1.3E-05 2.8E-10 74.2 33.9 156 112-270 52-213 (355)
82 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.6E-12 83.2 17.6 149 217-408 111-264 (290)
83 KOG3785 Uncharacterized conser 98.9 2.8E-05 6.1E-10 67.1 33.0 376 42-444 35-493 (557)
84 KOG4340 Uncharacterized conser 98.8 5.7E-07 1.2E-11 75.3 17.3 289 105-405 12-335 (459)
85 PF12854 PPR_1: PPR repeat 98.8 8.2E-09 1.8E-13 57.5 4.2 32 375-406 2-33 (34)
86 KOG0548 Molecular co-chaperone 98.8 1.9E-05 4.1E-10 71.9 27.5 393 42-458 15-472 (539)
87 KOG0624 dsRNA-activated protei 98.8 7.4E-05 1.6E-09 64.3 31.3 312 63-409 36-370 (504)
88 KOG2047 mRNA splicing factor [ 98.8 0.00016 3.6E-09 67.5 34.0 178 67-255 104-293 (835)
89 PF04733 Coatomer_E: Coatomer 98.8 3.4E-07 7.3E-12 80.4 14.9 228 174-445 37-269 (290)
90 PLN02789 farnesyltranstransfer 98.8 1.4E-05 3E-10 71.3 25.0 215 67-290 39-267 (320)
91 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 56.0 3.8 32 273-304 2-33 (34)
92 KOG2376 Signal recognition par 98.7 0.00028 6.2E-09 65.3 35.8 102 18-133 34-140 (652)
93 PRK04841 transcriptional regul 98.7 0.00033 7.2E-09 73.7 37.4 333 74-410 383-761 (903)
94 KOG4162 Predicted calmodulin-b 98.7 0.00043 9.4E-09 66.1 38.4 206 27-237 319-542 (799)
95 KOG2376 Signal recognition par 98.7 0.00034 7.4E-09 64.8 34.2 212 43-274 26-255 (652)
96 KOG1070 rRNA processing protei 98.6 2.5E-05 5.4E-10 78.9 25.5 223 168-426 1454-1682(1710)
97 KOG1070 rRNA processing protei 98.6 6.1E-05 1.3E-09 76.2 26.5 229 137-402 1457-1693(1710)
98 KOG3081 Vesicle coat complex C 98.6 7.7E-05 1.7E-09 62.0 22.5 250 110-408 15-270 (299)
99 KOG0985 Vesicle coat protein c 98.6 0.0011 2.5E-08 65.4 36.6 301 63-405 982-1304(1666)
100 KOG1127 TPR repeat-containing 98.6 0.00016 3.6E-09 70.8 27.3 183 43-236 472-658 (1238)
101 PRK14720 transcript cleavage f 98.5 0.00015 3.2E-09 72.5 27.8 237 102-391 30-268 (906)
102 KOG3785 Uncharacterized conser 98.5 0.00044 9.5E-09 60.0 30.0 199 178-383 291-497 (557)
103 PLN02789 farnesyltranstransfer 98.5 0.00013 2.9E-09 65.2 25.2 208 112-325 46-267 (320)
104 TIGR03302 OM_YfiO outer membra 98.5 1.3E-05 2.7E-10 69.4 18.4 188 100-307 30-232 (235)
105 TIGR03302 OM_YfiO outer membra 98.5 2.5E-05 5.3E-10 67.6 20.2 190 62-272 30-232 (235)
106 KOG1125 TPR repeat-containing 98.5 8E-06 1.7E-10 74.9 17.2 223 73-305 293-525 (579)
107 KOG1128 Uncharacterized conser 98.5 6.4E-05 1.4E-09 71.1 23.1 214 142-408 402-615 (777)
108 COG5010 TadD Flp pilus assembl 98.5 3.5E-05 7.6E-10 63.9 19.0 157 69-232 70-226 (257)
109 KOG3616 Selective LIM binding 98.5 0.00049 1.1E-08 65.5 28.6 170 109-303 738-907 (1636)
110 KOG1125 TPR repeat-containing 98.5 2E-05 4.4E-10 72.4 19.1 245 43-299 299-563 (579)
111 KOG3060 Uncharacterized conser 98.5 0.00033 7.1E-09 57.9 23.8 188 117-308 26-221 (289)
112 KOG3616 Selective LIM binding 98.5 0.00022 4.7E-09 67.7 25.8 160 43-231 746-905 (1636)
113 PRK10370 formate-dependent nit 98.5 0.00011 2.3E-09 61.1 21.8 159 215-421 23-184 (198)
114 PRK04841 transcriptional regul 98.5 0.0012 2.6E-08 69.5 35.1 325 112-437 383-753 (903)
115 COG5010 TadD Flp pilus assembl 98.5 4.2E-05 9.2E-10 63.5 18.8 160 142-305 70-229 (257)
116 KOG1128 Uncharacterized conser 98.4 2.8E-05 6.1E-10 73.5 18.3 223 61-307 394-616 (777)
117 PRK10370 formate-dependent nit 98.4 7.6E-05 1.7E-09 61.9 18.9 118 152-272 53-173 (198)
118 KOG0548 Molecular co-chaperone 98.4 0.0016 3.5E-08 59.8 30.7 363 22-409 26-455 (539)
119 KOG3617 WD40 and TPR repeat-co 98.4 2.9E-05 6.2E-10 74.3 17.6 283 103-443 726-1021(1416)
120 KOG1127 TPR repeat-containing 98.4 0.003 6.6E-08 62.4 31.7 182 80-271 473-658 (1238)
121 KOG1914 mRNA cleavage and poly 98.4 0.0018 4E-08 59.5 33.5 374 28-409 17-501 (656)
122 PRK15359 type III secretion sy 98.4 3.1E-05 6.6E-10 60.7 14.9 91 109-201 30-120 (144)
123 KOG3081 Vesicle coat complex C 98.3 0.00067 1.5E-08 56.6 22.3 162 247-446 112-276 (299)
124 PRK15359 type III secretion sy 98.3 5.1E-05 1.1E-09 59.5 15.6 95 211-307 27-121 (144)
125 COG4783 Putative Zn-dependent 98.3 0.0008 1.7E-08 61.1 24.4 138 148-307 316-454 (484)
126 PRK15179 Vi polysaccharide bio 98.3 0.00051 1.1E-08 68.0 24.7 146 134-283 82-227 (694)
127 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.5E-11 49.2 4.6 33 382-414 2-34 (35)
128 KOG0985 Vesicle coat protein c 98.3 0.0056 1.2E-07 60.8 33.4 322 6-370 957-1304(1666)
129 KOG3617 WD40 and TPR repeat-co 98.3 0.0029 6.2E-08 61.3 27.8 321 30-402 725-1102(1416)
130 PRK15179 Vi polysaccharide bio 98.3 0.0005 1.1E-08 68.0 23.9 179 103-291 86-268 (694)
131 KOG0624 dsRNA-activated protei 98.2 0.0025 5.4E-08 55.3 30.5 192 42-243 51-256 (504)
132 PF13812 PPR_3: Pentatricopept 98.2 2.5E-06 5.4E-11 47.9 4.6 33 381-413 2-34 (34)
133 KOG3060 Uncharacterized conser 98.2 0.0012 2.5E-08 54.8 21.3 189 79-273 26-221 (289)
134 TIGR02552 LcrH_SycD type III s 98.2 6.8E-05 1.5E-09 58.4 13.5 93 107-201 21-113 (135)
135 TIGR00756 PPR pentatricopeptid 98.2 4.1E-06 8.8E-11 47.4 4.6 33 280-312 2-34 (35)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.4E-05 1.2E-09 69.0 13.8 131 98-235 164-295 (395)
137 TIGR02552 LcrH_SycD type III s 98.1 0.00017 3.6E-09 56.1 14.8 92 177-271 22-113 (135)
138 PF13812 PPR_3: Pentatricopept 98.1 5E-06 1.1E-10 46.7 4.3 33 279-311 2-34 (34)
139 PRK14720 transcript cleavage f 98.1 0.00069 1.5E-08 68.0 21.7 215 64-289 30-268 (906)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 66.6 14.7 130 137-272 168-297 (395)
141 PF08579 RPM2: Mitochondrial r 98.1 9.5E-05 2.1E-09 52.9 10.2 75 215-289 32-115 (120)
142 COG4783 Putative Zn-dependent 98.1 0.0042 9.2E-08 56.6 23.0 164 136-306 272-436 (484)
143 KOG2053 Mitochondrial inherita 98.0 0.016 3.6E-07 56.8 31.5 140 34-183 13-155 (932)
144 KOG1914 mRNA cleavage and poly 98.0 0.012 2.6E-07 54.4 31.9 363 62-436 17-493 (656)
145 PF09976 TPR_21: Tetratricopep 98.0 0.00068 1.5E-08 53.3 15.3 128 67-198 14-143 (145)
146 KOG2053 Mitochondrial inherita 98.0 0.021 4.6E-07 56.1 35.6 381 19-421 33-514 (932)
147 PF09976 TPR_21: Tetratricopep 98.0 0.00046 9.9E-09 54.3 14.1 20 248-267 123-142 (145)
148 PF10037 MRP-S27: Mitochondria 98.0 0.00016 3.4E-09 66.3 12.7 125 166-291 60-186 (429)
149 PF10037 MRP-S27: Mitochondria 98.0 0.00018 3.9E-09 66.0 13.1 124 132-256 60-186 (429)
150 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.3E-10 44.2 3.2 30 382-411 2-31 (31)
151 PF08579 RPM2: Mitochondrial r 97.9 0.00022 4.9E-09 51.0 10.3 79 349-427 29-116 (120)
152 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.4E-10 42.4 3.7 29 280-308 2-30 (31)
153 PF06239 ECSIT: Evolutionarily 97.8 0.00082 1.8E-08 54.6 12.3 106 206-330 45-155 (228)
154 PF05843 Suf: Suppressor of fo 97.8 0.00093 2E-08 59.0 13.8 131 66-202 2-136 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00073 1.6E-08 51.1 11.4 97 68-166 5-104 (119)
156 cd00189 TPR Tetratricopeptide 97.7 0.00084 1.8E-08 48.0 11.1 91 214-306 6-96 (100)
157 PF06239 ECSIT: Evolutionarily 97.7 0.00056 1.2E-08 55.6 10.2 36 397-432 120-155 (228)
158 PF04840 Vps16_C: Vps16, C-ter 97.7 0.038 8.3E-07 49.5 23.0 111 278-405 177-287 (319)
159 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0017 3.7E-08 49.0 12.3 60 213-272 44-105 (119)
160 PRK10866 outer membrane biogen 97.6 0.035 7.6E-07 47.8 21.6 69 64-133 31-99 (243)
161 cd00189 TPR Tetratricopeptide 97.6 0.00094 2E-08 47.8 10.1 18 74-91 9-26 (100)
162 PF12895 Apc3: Anaphase-promot 97.6 0.00019 4.2E-09 50.3 5.9 80 187-268 3-83 (84)
163 PRK02603 photosystem I assembl 97.6 0.0031 6.8E-08 51.3 13.3 85 104-189 36-122 (172)
164 PRK10866 outer membrane biogen 97.6 0.018 3.9E-07 49.6 18.4 183 103-305 32-239 (243)
165 PRK15363 pathogenicity island 97.5 0.0048 1E-07 47.9 12.9 92 213-306 40-131 (157)
166 PF05843 Suf: Suppressor of fo 97.5 0.0021 4.5E-08 56.8 12.5 130 105-237 3-136 (280)
167 PLN03088 SGT1, suppressor of 97.5 0.0039 8.4E-08 57.2 14.7 91 180-273 10-100 (356)
168 PF12895 Apc3: Anaphase-promot 97.4 0.00031 6.7E-09 49.2 5.3 19 144-162 31-49 (84)
169 COG4700 Uncharacterized protei 97.4 0.018 3.9E-07 45.6 14.6 134 62-200 86-220 (251)
170 PRK02603 photosystem I assembl 97.4 0.012 2.7E-07 47.8 14.9 84 174-259 37-122 (172)
171 PRK15363 pathogenicity island 97.4 0.0067 1.4E-07 47.1 11.9 99 171-272 34-132 (157)
172 PF12688 TPR_5: Tetratrico pep 97.4 0.0088 1.9E-07 44.7 12.3 51 113-163 11-63 (120)
173 PRK10153 DNA-binding transcrip 97.4 0.022 4.8E-07 54.8 18.1 76 342-421 417-492 (517)
174 PLN03088 SGT1, suppressor of 97.3 0.0048 1.1E-07 56.6 12.9 85 115-201 14-98 (356)
175 PF14938 SNAP: Soluble NSF att 97.3 0.046 1E-06 48.5 18.7 148 142-304 98-263 (282)
176 CHL00033 ycf3 photosystem I as 97.2 0.015 3.3E-07 47.0 13.5 79 174-254 37-117 (168)
177 KOG2796 Uncharacterized conser 97.2 0.038 8.3E-07 46.4 15.4 131 68-202 180-315 (366)
178 PF14559 TPR_19: Tetratricopep 97.2 0.0017 3.8E-08 43.2 6.6 64 356-422 2-65 (68)
179 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.3E-08 44.2 5.5 51 77-131 3-53 (68)
180 PF13432 TPR_16: Tetratricopep 97.2 0.0022 4.7E-08 42.2 6.8 58 351-409 3-60 (65)
181 PF13432 TPR_16: Tetratricopep 97.2 0.0027 5.8E-08 41.8 7.2 58 71-132 3-60 (65)
182 PF14938 SNAP: Soluble NSF att 97.1 0.031 6.7E-07 49.6 15.7 168 223-423 89-276 (282)
183 PF12688 TPR_5: Tetratrico pep 97.1 0.055 1.2E-06 40.4 14.4 99 185-289 13-117 (120)
184 PF03704 BTAD: Bacterial trans 97.1 0.0065 1.4E-07 47.9 10.1 74 347-421 64-142 (146)
185 PF13525 YfiO: Outer membrane 97.1 0.032 6.9E-07 46.7 14.7 64 68-132 8-71 (203)
186 PF13414 TPR_11: TPR repeat; P 97.1 0.0024 5.2E-08 42.6 6.3 64 64-131 2-66 (69)
187 CHL00033 ycf3 photosystem I as 97.1 0.014 3E-07 47.3 11.8 63 67-130 37-99 (168)
188 PRK10153 DNA-binding transcrip 97.0 0.055 1.2E-06 52.2 17.0 138 166-308 331-483 (517)
189 KOG0553 TPR repeat-containing 97.0 0.07 1.5E-06 45.9 15.1 93 185-281 93-185 (304)
190 KOG0553 TPR repeat-containing 97.0 0.01 2.3E-07 50.7 10.3 84 77-165 93-176 (304)
191 PF07079 DUF1347: Protein of u 97.0 0.3 6.5E-06 44.7 23.9 166 247-416 132-332 (549)
192 PF13414 TPR_11: TPR repeat; P 96.9 0.0057 1.2E-07 40.8 7.2 61 210-271 5-66 (69)
193 PF03704 BTAD: Bacterial trans 96.8 0.0061 1.3E-07 48.0 7.8 70 67-140 64-138 (146)
194 COG4235 Cytochrome c biogenesi 96.8 0.052 1.1E-06 46.8 13.4 103 135-238 153-257 (287)
195 COG4700 Uncharacterized protei 96.8 0.19 4E-06 40.1 17.8 131 135-268 86-218 (251)
196 PF12921 ATP13: Mitochondrial 96.8 0.026 5.7E-07 42.6 10.3 81 345-425 2-98 (126)
197 KOG2041 WD40 repeat protein [G 96.7 0.64 1.4E-05 45.0 29.4 120 347-476 1023-1155(1189)
198 PF13371 TPR_9: Tetratricopept 96.7 0.016 3.6E-07 39.0 7.9 66 353-421 3-68 (73)
199 COG4235 Cytochrome c biogenesi 96.6 0.14 3.1E-06 44.3 14.6 99 207-307 155-256 (287)
200 PRK10803 tol-pal system protei 96.6 0.082 1.8E-06 46.0 13.1 98 174-272 145-246 (263)
201 KOG2796 Uncharacterized conser 96.5 0.4 8.7E-06 40.5 18.9 129 142-272 181-315 (366)
202 PRK10803 tol-pal system protei 96.5 0.042 9.1E-07 47.8 11.2 88 114-202 154-246 (263)
203 PF13424 TPR_12: Tetratricopep 96.5 0.012 2.6E-07 40.3 6.2 64 345-408 5-74 (78)
204 PRK15331 chaperone protein Sic 96.4 0.34 7.3E-06 38.1 15.3 91 215-307 44-134 (165)
205 PF09205 DUF1955: Domain of un 96.4 0.26 5.7E-06 36.8 13.5 137 254-412 13-152 (161)
206 PF13371 TPR_9: Tetratricopept 96.4 0.023 5.1E-07 38.3 7.2 57 73-133 3-59 (73)
207 PF04840 Vps16_C: Vps16, C-ter 96.4 0.7 1.5E-05 41.6 23.1 101 179-300 184-284 (319)
208 PF13281 DUF4071: Domain of un 96.3 0.89 1.9E-05 41.5 18.2 32 277-308 304-335 (374)
209 KOG2041 WD40 repeat protein [G 96.2 1.3 2.8E-05 43.1 26.9 206 63-303 690-903 (1189)
210 KOG3941 Intermediate in Toll s 96.2 0.066 1.4E-06 45.5 10.0 46 312-357 66-119 (406)
211 PF12921 ATP13: Mitochondrial 96.2 0.11 2.4E-06 39.3 10.4 50 204-253 48-98 (126)
212 PF13281 DUF4071: Domain of un 96.2 0.98 2.1E-05 41.2 19.9 28 103-130 141-168 (374)
213 PF13525 YfiO: Outer membrane 96.2 0.63 1.4E-05 39.0 19.3 57 216-272 13-71 (203)
214 KOG0550 Molecular chaperone (D 96.1 1 2.2E-05 40.9 19.7 156 216-409 177-350 (486)
215 KOG2280 Vacuolar assembly/sort 96.1 1.5 3.4E-05 42.9 32.3 113 275-403 681-793 (829)
216 PF10300 DUF3808: Protein of u 96.1 0.38 8.2E-06 46.1 16.1 165 68-236 191-375 (468)
217 KOG1130 Predicted G-alpha GTPa 96.1 0.091 2E-06 47.2 10.8 137 244-407 196-342 (639)
218 PF04053 Coatomer_WDAD: Coatom 95.9 0.36 7.7E-06 45.6 14.8 168 28-233 260-427 (443)
219 PF09205 DUF1955: Domain of un 95.8 0.54 1.2E-05 35.2 13.3 63 211-274 89-151 (161)
220 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.11 2.4E-06 47.9 10.4 97 207-309 74-176 (453)
221 PF13424 TPR_12: Tetratricopep 95.7 0.042 9.1E-07 37.6 6.0 60 210-269 7-72 (78)
222 PF13512 TPR_18: Tetratricopep 95.7 0.25 5.4E-06 37.8 10.3 81 70-151 15-95 (142)
223 PF10300 DUF3808: Protein of u 95.6 0.86 1.9E-05 43.7 16.1 179 121-306 175-375 (468)
224 KOG3941 Intermediate in Toll s 95.5 0.2 4.3E-06 42.7 10.0 104 205-327 64-172 (406)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.14 3.1E-06 47.2 9.7 66 342-409 72-141 (453)
226 KOG1538 Uncharacterized conser 95.4 1.5 3.2E-05 42.3 16.2 32 57-91 627-658 (1081)
227 PRK15331 chaperone protein Sic 95.4 0.81 1.8E-05 36.1 12.3 86 185-272 49-134 (165)
228 COG3629 DnrI DNA-binding trans 95.4 0.25 5.5E-06 42.9 10.5 79 346-425 154-237 (280)
229 COG3118 Thioredoxin domain-con 95.2 1.3 2.8E-05 38.5 13.9 145 111-260 142-289 (304)
230 KOG1585 Protein required for f 95.2 1.7 3.6E-05 36.6 14.9 208 65-302 31-251 (308)
231 PRK11906 transcriptional regul 95.1 1.6 3.4E-05 40.7 15.3 162 66-232 252-431 (458)
232 PF04053 Coatomer_WDAD: Coatom 95.1 1.5 3.3E-05 41.5 15.7 131 104-267 296-426 (443)
233 COG4105 ComL DNA uptake lipopr 95.1 1.9 4.1E-05 36.7 20.0 83 65-149 35-117 (254)
234 KOG2114 Vacuolar assembly/sort 95.0 1.8 3.8E-05 43.1 16.0 80 218-304 378-457 (933)
235 KOG2280 Vacuolar assembly/sort 95.0 4.1 8.8E-05 40.2 27.2 126 108-236 442-574 (829)
236 PF10602 RPN7: 26S proteasome 95.0 1.2 2.5E-05 36.3 13.0 99 65-164 36-139 (177)
237 COG5107 RNA14 Pre-mRNA 3'-end 94.9 3.1 6.8E-05 38.4 32.3 144 278-426 397-546 (660)
238 PF13512 TPR_18: Tetratricopep 94.7 0.72 1.6E-05 35.4 10.1 76 146-222 18-96 (142)
239 PF07035 Mic1: Colon cancer-as 94.6 1.9 4.1E-05 34.4 14.5 133 264-409 15-149 (167)
240 COG1729 Uncharacterized protei 94.6 0.88 1.9E-05 39.0 11.5 102 67-170 144-247 (262)
241 COG3629 DnrI DNA-binding trans 94.5 0.5 1.1E-05 41.1 10.0 77 67-147 155-236 (280)
242 COG4105 ComL DNA uptake lipopr 94.5 2.7 5.9E-05 35.8 19.8 67 28-94 32-100 (254)
243 COG4649 Uncharacterized protei 94.5 2 4.3E-05 34.1 13.8 139 64-206 58-200 (221)
244 smart00299 CLH Clathrin heavy 94.4 1.8 4E-05 33.5 14.9 43 70-116 12-54 (140)
245 PF08631 SPO22: Meiosis protei 94.4 3.5 7.5E-05 36.6 24.1 225 76-304 4-272 (278)
246 PF13431 TPR_17: Tetratricopep 94.4 0.005 1.1E-07 34.1 -1.5 33 435-467 2-34 (34)
247 KOG2114 Vacuolar assembly/sort 94.3 2.1 4.6E-05 42.6 14.7 176 106-304 337-516 (933)
248 COG1729 Uncharacterized protei 94.3 1.3 2.9E-05 37.9 12.0 101 31-132 142-244 (262)
249 KOG1920 IkappaB kinase complex 94.3 1.3 2.7E-05 45.9 13.6 27 30-56 852-878 (1265)
250 PF07079 DUF1347: Protein of u 94.3 4.5 9.8E-05 37.5 36.5 119 294-420 396-530 (549)
251 PF13170 DUF4003: Protein of u 94.2 3.8 8.2E-05 36.5 20.4 149 261-409 80-250 (297)
252 KOG0543 FKBP-type peptidyl-pro 94.2 2 4.4E-05 39.0 13.5 90 181-272 217-320 (397)
253 PF13428 TPR_14: Tetratricopep 94.2 0.14 3E-06 30.3 4.5 28 105-132 3-30 (44)
254 KOG1538 Uncharacterized conser 93.9 6.8 0.00015 38.1 21.2 95 62-163 553-657 (1081)
255 COG3118 Thioredoxin domain-con 93.7 4.3 9.4E-05 35.4 15.9 142 147-292 143-286 (304)
256 KOG0550 Molecular chaperone (D 93.7 5.6 0.00012 36.4 23.6 252 45-308 65-351 (486)
257 COG3898 Uncharacterized membra 93.4 6 0.00013 36.0 30.8 294 105-409 84-392 (531)
258 PF02284 COX5A: Cytochrome c o 93.4 0.88 1.9E-05 32.3 7.6 60 121-180 28-87 (108)
259 PF13176 TPR_7: Tetratricopept 93.4 0.24 5.3E-06 27.7 4.3 26 382-407 1-26 (36)
260 PF13428 TPR_14: Tetratricopep 93.3 0.27 5.8E-06 29.0 4.7 40 66-109 2-41 (44)
261 KOG0543 FKBP-type peptidyl-pro 93.2 1.4 3E-05 40.1 10.6 61 141-202 260-320 (397)
262 COG4649 Uncharacterized protei 93.0 3.8 8.1E-05 32.6 14.1 137 103-241 59-200 (221)
263 KOG2610 Uncharacterized conser 93.0 3.9 8.4E-05 36.3 12.7 152 114-268 114-272 (491)
264 KOG1130 Predicted G-alpha GTPa 93.0 3.4 7.3E-05 37.7 12.5 228 74-303 26-300 (639)
265 PRK11906 transcriptional regul 93.0 8.1 0.00018 36.2 16.2 146 154-302 274-431 (458)
266 KOG2610 Uncharacterized conser 92.9 6.5 0.00014 34.9 13.8 153 149-303 114-272 (491)
267 smart00299 CLH Clathrin heavy 92.5 4 8.6E-05 31.6 15.2 42 178-221 13-54 (140)
268 KOG4555 TPR repeat-containing 92.5 3.6 7.8E-05 30.9 12.1 91 217-308 52-145 (175)
269 PF13170 DUF4003: Protein of u 92.5 7.6 0.00016 34.6 18.5 24 120-143 79-102 (297)
270 KOG4555 TPR repeat-containing 92.3 3.8 8.2E-05 30.8 10.2 91 147-238 52-145 (175)
271 cd00923 Cyt_c_Oxidase_Va Cytoc 92.1 2 4.3E-05 30.2 7.9 62 119-180 23-84 (103)
272 COG0457 NrfG FOG: TPR repeat [ 92.0 6.7 0.00015 33.0 24.9 201 104-307 60-265 (291)
273 PF10602 RPN7: 26S proteasome 91.8 4 8.7E-05 33.2 11.1 101 346-446 37-144 (177)
274 KOG1941 Acetylcholine receptor 91.7 8.9 0.00019 34.5 13.4 234 33-270 9-273 (518)
275 PF08631 SPO22: Meiosis protei 91.7 9.2 0.0002 33.9 26.4 161 245-407 86-273 (278)
276 KOG4570 Uncharacterized conser 91.6 2.9 6.4E-05 36.6 10.2 102 133-237 59-164 (418)
277 PF00515 TPR_1: Tetratricopept 91.3 0.67 1.4E-05 25.3 4.4 28 381-408 2-29 (34)
278 PF13929 mRNA_stabil: mRNA sta 91.2 9.8 0.00021 33.3 13.2 119 185-303 140-263 (292)
279 PF13929 mRNA_stabil: mRNA sta 90.9 10 0.00022 33.1 15.7 115 311-425 162-288 (292)
280 PF13176 TPR_7: Tetratricopept 90.7 0.5 1.1E-05 26.4 3.5 23 106-128 2-24 (36)
281 COG5107 RNA14 Pre-mRNA 3'-end 90.7 14 0.00031 34.4 19.6 129 138-271 397-530 (660)
282 PF09613 HrpB1_HrpK: Bacterial 90.4 7.5 0.00016 30.7 12.6 19 76-94 55-73 (160)
283 KOG1585 Protein required for f 90.1 11 0.00023 32.0 13.8 176 104-305 32-217 (308)
284 PF07719 TPR_2: Tetratricopept 89.9 1 2.3E-05 24.4 4.4 27 382-408 3-29 (34)
285 PF02259 FAT: FAT domain; Int 89.8 16 0.00035 33.6 18.4 66 343-408 144-212 (352)
286 PF07035 Mic1: Colon cancer-as 89.8 9 0.0002 30.6 14.6 35 127-161 18-52 (167)
287 KOG0890 Protein kinase of the 89.7 44 0.00094 38.4 29.8 111 345-459 1670-1802(2382)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 89.3 3.2 6.9E-05 29.3 6.9 45 226-270 25-69 (103)
289 KOG1941 Acetylcholine receptor 89.2 5.9 0.00013 35.6 10.3 122 185-306 18-150 (518)
290 PF11207 DUF2989: Protein of u 88.9 12 0.00026 30.9 11.3 79 75-158 117-198 (203)
291 PF04184 ST7: ST7 protein; In 88.9 21 0.00046 33.8 17.2 70 347-417 261-331 (539)
292 PF09613 HrpB1_HrpK: Bacterial 88.8 10 0.00022 29.9 12.1 17 185-201 56-72 (160)
293 COG4785 NlpI Lipoprotein NlpI, 88.6 13 0.00028 30.9 11.2 161 243-410 99-267 (297)
294 KOG4570 Uncharacterized conser 88.6 1.9 4.1E-05 37.7 6.7 100 59-163 58-160 (418)
295 PF04184 ST7: ST7 protein; In 88.5 23 0.0005 33.6 19.2 60 107-166 263-323 (539)
296 PF13374 TPR_10: Tetratricopep 88.4 1.5 3.3E-05 25.1 4.6 29 380-408 2-30 (42)
297 PF13431 TPR_17: Tetratricopep 87.9 0.61 1.3E-05 25.7 2.4 20 103-122 13-32 (34)
298 COG3947 Response regulator con 87.3 19 0.00042 31.5 16.5 60 210-270 281-340 (361)
299 COG3898 Uncharacterized membra 86.6 26 0.00056 32.2 33.1 310 43-375 67-393 (531)
300 COG2909 MalT ATP-dependent tra 86.5 41 0.0009 34.5 33.6 189 219-410 426-648 (894)
301 KOG0991 Replication factor C, 86.2 20 0.00042 30.4 12.7 86 330-418 179-276 (333)
302 PF04097 Nic96: Nup93/Nic96; 86.0 41 0.00088 33.9 15.8 221 215-442 265-532 (613)
303 COG1747 Uncharacterized N-term 85.9 33 0.00071 32.7 18.8 179 63-253 64-249 (711)
304 PF11207 DUF2989: Protein of u 85.9 15 0.00032 30.3 10.1 80 112-193 115-198 (203)
305 KOG0276 Vesicle coat complex C 85.6 10 0.00022 36.7 10.2 43 115-163 649-691 (794)
306 COG0457 NrfG FOG: TPR repeat [ 84.8 22 0.00047 29.7 28.6 203 172-409 59-265 (291)
307 PF13374 TPR_10: Tetratricopep 84.8 2.7 5.9E-05 24.0 4.4 28 103-130 2-29 (42)
308 KOG4077 Cytochrome c oxidase, 84.7 4.5 9.8E-05 30.1 6.0 56 122-177 68-123 (149)
309 TIGR02561 HrpB1_HrpK type III 84.5 17 0.00037 28.3 10.7 18 185-202 56-73 (153)
310 PF00637 Clathrin: Region in C 84.4 0.91 2E-05 35.4 2.7 107 351-469 13-119 (143)
311 PF13181 TPR_8: Tetratricopept 84.0 3.9 8.5E-05 22.0 4.5 28 381-408 2-29 (34)
312 PF02284 COX5A: Cytochrome c o 83.8 14 0.0003 26.5 9.8 60 363-423 28-87 (108)
313 COG5159 RPN6 26S proteasome re 83.4 25 0.00055 30.6 10.7 95 212-306 129-234 (421)
314 PF00515 TPR_1: Tetratricopept 83.1 4.2 9.2E-05 22.0 4.4 27 105-131 3-29 (34)
315 PRK15180 Vi polysaccharide bio 82.8 44 0.00095 31.6 14.1 122 113-238 299-421 (831)
316 COG4455 ImpE Protein of avirul 81.8 9.2 0.0002 31.8 7.3 57 70-130 6-62 (273)
317 PF00637 Clathrin: Region in C 81.3 0.59 1.3E-05 36.5 0.6 84 214-304 13-96 (143)
318 KOG0890 Protein kinase of the 80.8 1.2E+02 0.0026 35.3 21.5 152 108-267 1388-1542(2382)
319 KOG0276 Vesicle coat complex C 80.6 49 0.0011 32.4 12.5 131 141-304 617-747 (794)
320 PF07719 TPR_2: Tetratricopept 80.5 5.8 0.00013 21.2 4.4 27 105-131 3-29 (34)
321 COG3947 Response regulator con 80.5 40 0.00086 29.7 15.0 71 347-418 281-356 (361)
322 PF07721 TPR_4: Tetratricopept 80.3 3 6.4E-05 21.1 2.8 20 385-404 6-25 (26)
323 COG4455 ImpE Protein of avirul 79.2 13 0.00027 31.1 7.3 52 109-161 7-58 (273)
324 KOG1258 mRNA processing protei 79.1 67 0.0014 31.4 24.0 59 355-416 341-400 (577)
325 PF07163 Pex26: Pex26 protein; 78.8 37 0.0008 29.6 10.2 87 179-266 90-181 (309)
326 PF10579 Rapsyn_N: Rapsyn N-te 78.8 8.4 0.00018 26.1 5.2 47 357-403 18-66 (80)
327 TIGR03504 FimV_Cterm FimV C-te 78.7 4.7 0.0001 23.8 3.6 23 386-408 5-27 (44)
328 PHA02875 ankyrin repeat protei 78.5 35 0.00076 32.3 11.6 181 110-313 39-230 (413)
329 PRK14135 recX recombination re 78.4 46 0.001 29.2 12.8 15 465-479 235-249 (263)
330 KOG2066 Vacuolar assembly/sort 77.7 85 0.0018 31.8 27.1 48 65-119 392-439 (846)
331 KOG1550 Extracellular protein 77.6 79 0.0017 31.4 17.8 118 188-309 308-428 (552)
332 TIGR03504 FimV_Cterm FimV C-te 77.4 6.6 0.00014 23.2 4.0 24 284-307 5-28 (44)
333 PF13174 TPR_6: Tetratricopept 76.3 5.7 0.00012 21.0 3.5 26 384-409 4-29 (33)
334 PF13181 TPR_8: Tetratricopept 74.7 9.7 0.00021 20.4 4.2 26 246-271 4-29 (34)
335 KOG1920 IkappaB kinase complex 74.5 1.3E+02 0.0028 32.3 23.8 136 143-305 913-1053(1265)
336 KOG4648 Uncharacterized conser 74.4 15 0.00032 32.9 6.9 48 148-196 107-154 (536)
337 PF14689 SPOB_a: Sensor_kinase 74.3 8.5 0.00018 24.8 4.3 47 360-408 5-51 (62)
338 PF11848 DUF3368: Domain of un 73.1 17 0.00036 21.9 5.1 32 391-422 13-44 (48)
339 PF10345 Cohesin_load: Cohesin 72.9 1.1E+02 0.0024 30.9 32.4 51 79-129 153-205 (608)
340 KOG4234 TPR repeat-containing 72.7 53 0.0012 27.1 9.3 90 217-308 104-198 (271)
341 PF02259 FAT: FAT domain; Int 72.6 78 0.0017 29.0 19.7 65 207-271 145-212 (352)
342 KOG4234 TPR repeat-containing 72.2 55 0.0012 27.1 9.9 87 185-272 107-197 (271)
343 PF09477 Type_III_YscG: Bacter 70.9 38 0.00082 24.6 8.4 80 117-203 20-99 (116)
344 PHA02875 ankyrin repeat protei 70.6 98 0.0021 29.3 13.0 213 111-345 7-230 (413)
345 KOG4077 Cytochrome c oxidase, 69.8 45 0.00098 25.1 7.6 45 364-408 68-112 (149)
346 COG2137 OraA Uncharacterized p 69.3 60 0.0013 26.3 12.4 124 5-152 27-151 (174)
347 PF07163 Pex26: Pex26 protein; 69.0 80 0.0017 27.7 10.0 88 214-301 89-181 (309)
348 PF13762 MNE1: Mitochondrial s 68.6 54 0.0012 25.5 11.1 23 212-234 43-65 (145)
349 PF09670 Cas_Cas02710: CRISPR- 68.4 1E+02 0.0023 28.8 12.9 52 219-271 142-197 (379)
350 PF13934 ELYS: Nuclear pore co 67.7 78 0.0017 27.0 12.2 111 57-183 71-183 (226)
351 PF14853 Fis1_TPR_C: Fis1 C-te 67.4 27 0.00059 21.6 6.1 38 385-424 6-43 (53)
352 PF11848 DUF3368: Domain of un 66.7 26 0.00056 21.1 5.1 35 354-388 11-45 (48)
353 PRK14951 DNA polymerase III su 66.3 1.1E+02 0.0023 30.9 11.8 34 103-137 251-284 (618)
354 KOG2908 26S proteasome regulat 66.3 1E+02 0.0022 27.9 11.9 90 350-439 80-181 (380)
355 KOG4648 Uncharacterized conser 66.2 23 0.00049 31.8 6.3 53 74-130 106-158 (536)
356 PRK10564 maltose regulon perip 65.7 15 0.00033 32.3 5.2 40 102-141 256-295 (303)
357 PLN03025 replication factor C 65.1 1.1E+02 0.0024 27.8 15.1 34 103-137 225-258 (319)
358 COG1747 Uncharacterized N-term 65.0 1.4E+02 0.003 28.9 22.8 95 207-306 65-159 (711)
359 PF11846 DUF3366: Domain of un 64.9 42 0.00091 27.7 7.7 55 357-413 120-175 (193)
360 COG4785 NlpI Lipoprotein NlpI, 64.3 87 0.0019 26.4 18.5 161 208-375 99-267 (297)
361 smart00028 TPR Tetratricopepti 64.3 15 0.00032 18.5 3.5 27 382-408 3-29 (34)
362 PF10345 Cohesin_load: Cohesin 63.4 1.7E+02 0.0038 29.5 32.3 68 355-422 371-454 (608)
363 PF09797 NatB_MDM20: N-acetylt 63.2 44 0.00095 31.1 8.3 59 105-164 182-243 (365)
364 PRK15180 Vi polysaccharide bio 63.0 1.4E+02 0.0031 28.4 26.2 113 15-133 309-421 (831)
365 PRK14958 DNA polymerase III su 62.5 91 0.002 30.6 10.4 89 46-137 181-279 (509)
366 PF12862 Apc5: Anaphase-promot 62.5 53 0.0011 23.2 8.0 71 355-425 8-87 (94)
367 PHA03100 ankyrin repeat protei 62.3 1.5E+02 0.0032 28.8 12.2 72 150-227 117-192 (480)
368 KOG4507 Uncharacterized conser 62.1 44 0.00096 32.5 7.8 88 219-307 618-705 (886)
369 PF04762 IKI3: IKI3 family; I 61.8 1E+02 0.0022 32.9 11.3 29 244-272 813-843 (928)
370 PRK08691 DNA polymerase III su 61.6 72 0.0016 32.4 9.6 88 46-136 181-278 (709)
371 TIGR02561 HrpB1_HrpK type III 61.0 79 0.0017 24.8 11.5 19 254-272 55-73 (153)
372 PRK09687 putative lyase; Provi 61.0 1.2E+02 0.0026 26.9 28.7 234 63-324 35-278 (280)
373 PF06552 TOM20_plant: Plant sp 60.3 74 0.0016 25.9 7.7 42 224-273 96-137 (186)
374 COG0735 Fur Fe2+/Zn2+ uptake r 60.3 81 0.0017 24.6 8.2 62 332-394 8-69 (145)
375 TIGR02508 type_III_yscG type I 60.1 62 0.0013 23.3 8.4 79 118-203 20-98 (115)
376 PF14689 SPOB_a: Sensor_kinase 59.8 33 0.00072 22.0 4.8 15 252-266 32-46 (62)
377 PF07575 Nucleopor_Nup85: Nup8 59.5 60 0.0013 32.4 8.9 98 207-308 371-468 (566)
378 cd00280 TRFH Telomeric Repeat 59.3 87 0.0019 25.5 7.8 38 250-290 118-155 (200)
379 PRK06645 DNA polymerase III su 59.1 91 0.002 30.5 9.7 35 103-138 258-292 (507)
380 COG2976 Uncharacterized protei 59.1 1E+02 0.0022 25.5 16.9 130 244-410 55-189 (207)
381 PF11846 DUF3366: Domain of un 58.6 26 0.00056 29.0 5.4 29 103-131 144-172 (193)
382 PF04097 Nic96: Nup93/Nic96; 58.6 2.1E+02 0.0046 28.9 15.0 42 109-151 117-158 (613)
383 PRK14970 DNA polymerase III su 58.6 1.4E+02 0.003 27.8 10.8 28 108-136 240-267 (367)
384 COG4259 Uncharacterized protei 58.2 59 0.0013 23.2 6.0 47 123-169 57-103 (121)
385 PRK11619 lytic murein transgly 57.9 2.2E+02 0.0048 29.0 25.4 80 328-409 259-341 (644)
386 PRK14956 DNA polymerase III su 57.8 1.9E+02 0.0041 28.1 12.5 35 103-137 248-282 (484)
387 PRK14961 DNA polymerase III su 57.6 1.4E+02 0.003 27.8 10.5 34 103-137 246-279 (363)
388 KOG1464 COP9 signalosome, subu 57.4 1.3E+02 0.0029 26.2 22.1 59 247-305 149-218 (440)
389 PRK12323 DNA polymerase III su 57.2 2.3E+02 0.0049 28.9 14.3 32 24-55 198-229 (700)
390 PRK09111 DNA polymerase III su 57.0 1.6E+02 0.0035 29.6 11.2 30 107-137 263-292 (598)
391 PRK09687 putative lyase; Provi 56.9 1.4E+02 0.0031 26.5 27.8 198 207-425 67-277 (280)
392 PRK08691 DNA polymerase III su 56.8 2.4E+02 0.0051 28.9 13.7 79 20-99 189-279 (709)
393 PF10579 Rapsyn_N: Rapsyn N-te 56.3 33 0.00072 23.3 4.4 20 67-86 45-64 (80)
394 KOG3636 Uncharacterized conser 56.2 1.8E+02 0.0039 27.4 15.2 89 201-290 176-272 (669)
395 PRK07003 DNA polymerase III su 55.9 59 0.0013 33.4 7.9 88 46-136 181-278 (830)
396 cd00280 TRFH Telomeric Repeat 55.6 91 0.002 25.4 7.4 48 361-408 85-139 (200)
397 PF11663 Toxin_YhaV: Toxin wit 55.6 16 0.00034 27.8 3.1 21 292-312 109-129 (140)
398 PF11663 Toxin_YhaV: Toxin wit 55.4 12 0.00025 28.4 2.4 21 79-99 109-129 (140)
399 KOG0686 COP9 signalosome, subu 55.0 1.8E+02 0.004 27.1 14.6 94 65-161 150-252 (466)
400 PRK10941 hypothetical protein; 54.9 1.5E+02 0.0033 26.1 9.9 78 105-183 183-262 (269)
401 PRK07003 DNA polymerase III su 54.3 2.7E+02 0.0059 28.9 13.7 92 6-98 165-278 (830)
402 COG0735 Fur Fe2+/Zn2+ uptake r 54.3 85 0.0018 24.5 7.2 27 249-275 26-52 (145)
403 PF11838 ERAP1_C: ERAP1-like C 54.0 1.7E+02 0.0037 26.4 13.8 63 63-131 167-229 (324)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 53.7 77 0.0017 24.0 6.7 45 83-129 81-125 (126)
405 TIGR02397 dnaX_nterm DNA polym 52.9 1.9E+02 0.0041 26.6 11.9 40 105-146 246-285 (355)
406 PRK13342 recombination factor 52.8 2.1E+02 0.0046 27.2 20.1 32 186-217 243-274 (413)
407 PF01196 Ribosomal_L17: Riboso 52.5 40 0.00087 24.1 4.7 78 384-461 3-87 (97)
408 PF13762 MNE1: Mitochondrial s 52.5 1.1E+02 0.0024 23.9 12.0 24 175-199 42-65 (145)
409 COG2976 Uncharacterized protei 51.1 1.4E+02 0.0031 24.7 14.2 128 173-308 55-189 (207)
410 cd07153 Fur_like Ferric uptake 50.9 37 0.0008 25.1 4.7 40 3-42 5-46 (116)
411 COG5108 RPO41 Mitochondrial DN 50.9 92 0.002 31.0 8.0 23 350-372 33-55 (1117)
412 PF08424 NRDE-2: NRDE-2, neces 50.7 2E+02 0.0043 26.2 15.6 63 120-183 48-110 (321)
413 KOG2297 Predicted translation 49.8 1.9E+02 0.0042 25.8 16.9 21 243-263 321-341 (412)
414 PRK05629 hypothetical protein; 49.6 1.8E+02 0.004 26.3 9.8 25 114-138 204-228 (318)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 49.5 1.1E+02 0.0025 23.1 8.3 43 363-405 81-124 (126)
416 PRK14963 DNA polymerase III su 49.4 2.7E+02 0.0058 27.4 11.8 32 105-137 244-275 (504)
417 PRK10564 maltose regulon perip 49.1 40 0.00087 29.8 5.1 35 281-315 260-294 (303)
418 PRK14958 DNA polymerase III su 48.8 2.7E+02 0.006 27.4 12.2 79 20-99 189-279 (509)
419 PRK05591 rplQ 50S ribosomal pr 48.8 1.1E+02 0.0024 22.7 7.8 80 382-461 17-103 (113)
420 PF12862 Apc5: Anaphase-promot 48.7 72 0.0016 22.5 5.7 56 76-131 9-69 (94)
421 PRK14962 DNA polymerase III su 48.6 2.7E+02 0.0058 27.1 14.9 26 115-140 255-280 (472)
422 KOG4507 Uncharacterized conser 48.3 1.5E+02 0.0033 29.1 8.9 28 173-201 677-704 (886)
423 KOG2063 Vacuolar assembly/sort 47.9 3.6E+02 0.0079 28.5 20.0 248 68-338 507-794 (877)
424 cd08819 CARD_MDA5_2 Caspase ac 47.4 96 0.0021 21.7 6.7 34 221-259 49-82 (88)
425 KOG2908 26S proteasome regulat 47.4 2.2E+02 0.0048 25.9 10.6 66 215-280 82-157 (380)
426 PF01475 FUR: Ferric uptake re 47.1 35 0.00076 25.5 4.0 40 3-42 12-53 (120)
427 PRK12798 chemotaxis protein; R 46.9 2.5E+02 0.0055 26.4 14.6 203 4-207 120-329 (421)
428 COG2812 DnaX DNA polymerase II 46.9 74 0.0016 31.0 6.9 91 44-138 179-280 (515)
429 PRK12323 DNA polymerase III su 46.3 2.1E+02 0.0045 29.1 9.8 101 32-135 166-282 (700)
430 PF01316 Arg_repressor: Argini 46.1 70 0.0015 21.3 4.7 39 3-41 9-48 (70)
431 PRK13342 recombination factor 46.0 2.7E+02 0.0059 26.5 19.0 99 205-322 173-274 (413)
432 KOG3364 Membrane protein invol 45.9 1.4E+02 0.003 23.1 9.2 76 342-419 29-108 (149)
433 PRK07914 hypothetical protein; 45.8 2.3E+02 0.0051 25.7 11.5 24 114-137 206-229 (320)
434 COG2137 OraA Uncharacterized p 45.6 1.6E+02 0.0035 23.8 11.4 99 330-432 55-154 (174)
435 TIGR02508 type_III_yscG type I 45.6 1.1E+02 0.0025 22.0 8.5 55 185-246 51-105 (115)
436 PF08461 HTH_12: Ribonuclease 45.3 53 0.0011 21.5 4.1 43 3-45 2-46 (66)
437 KOG0687 26S proteasome regulat 45.3 2.4E+02 0.0051 25.6 15.6 169 222-394 36-230 (393)
438 PF05944 Phage_term_smal: Phag 45.2 58 0.0013 24.9 4.8 28 385-412 53-80 (132)
439 TIGR01228 hutU urocanate hydra 44.9 1.8E+02 0.0038 28.0 8.6 69 221-302 207-280 (545)
440 KOG2582 COP9 signalosome, subu 44.8 2.5E+02 0.0055 25.8 17.3 128 62-201 72-211 (422)
441 KOG0403 Neoplastic transformat 44.8 1.4E+02 0.0029 28.3 7.8 74 176-255 513-586 (645)
442 PRK14965 DNA polymerase III su 44.1 3.5E+02 0.0076 27.2 11.8 23 114-136 256-278 (576)
443 KOG4567 GTPase-activating prot 43.8 1.7E+02 0.0037 26.2 7.8 70 330-404 263-342 (370)
444 PF00244 14-3-3: 14-3-3 protei 43.6 2.1E+02 0.0046 24.6 10.3 57 214-270 7-64 (236)
445 PRK11639 zinc uptake transcrip 43.3 1.8E+02 0.0038 23.5 8.1 62 334-396 15-76 (169)
446 KOG2297 Predicted translation 43.2 2.5E+02 0.0054 25.2 20.2 40 2-41 33-72 (412)
447 KOG1258 mRNA processing protei 42.6 3.5E+02 0.0076 26.8 32.6 339 46-394 96-489 (577)
448 PRK13184 pknD serine/threonine 42.5 4.6E+02 0.01 28.2 26.7 294 144-442 481-867 (932)
449 PRK14960 DNA polymerase III su 42.4 1.6E+02 0.0035 29.9 8.5 141 1-148 135-288 (702)
450 PF03745 DUF309: Domain of unk 42.0 90 0.002 20.1 4.7 16 255-270 11-26 (62)
451 COG5108 RPO41 Mitochondrial DN 42.0 2.1E+02 0.0045 28.8 8.8 90 143-236 33-131 (1117)
452 PF07575 Nucleopor_Nup85: Nup8 41.8 3.7E+02 0.0081 26.9 19.9 33 392-424 507-539 (566)
453 PF10475 DUF2450: Protein of u 41.4 2.4E+02 0.0051 25.3 9.0 27 342-368 194-220 (291)
454 PRK07452 DNA polymerase III su 41.4 2.8E+02 0.006 25.2 11.0 31 105-137 203-233 (326)
455 PF02847 MA3: MA3 domain; Int 40.9 1.4E+02 0.0031 21.8 6.7 96 247-343 6-113 (113)
456 PRK11639 zinc uptake transcrip 40.8 1.9E+02 0.0042 23.3 7.8 58 235-293 18-75 (169)
457 PRK05563 DNA polymerase III su 40.8 3.9E+02 0.0084 26.8 11.6 89 46-137 181-279 (559)
458 KOG0991 Replication factor C, 40.5 2.4E+02 0.0052 24.3 15.6 35 206-241 237-271 (333)
459 PRK14950 DNA polymerase III su 40.4 4E+02 0.0087 26.8 11.9 31 106-137 250-280 (585)
460 KOG2066 Vacuolar assembly/sort 40.2 4.4E+02 0.0095 27.2 26.8 103 72-183 363-466 (846)
461 PRK11619 lytic murein transgly 39.8 4.3E+02 0.0093 27.0 29.5 121 30-163 33-154 (644)
462 COG1466 HolA DNA polymerase II 38.9 3.1E+02 0.0067 25.1 11.6 36 20-55 151-186 (334)
463 PRK09462 fur ferric uptake reg 38.8 1.9E+02 0.0041 22.6 8.1 60 335-395 7-67 (148)
464 PRK06305 DNA polymerase III su 38.6 3.7E+02 0.0081 26.0 10.5 28 108-136 253-280 (451)
465 PRK14952 DNA polymerase III su 38.5 3.8E+02 0.0083 26.9 10.5 29 108-137 251-279 (584)
466 PRK14971 DNA polymerase III su 37.9 3.5E+02 0.0076 27.4 10.3 33 104-137 249-281 (614)
467 PRK07764 DNA polymerase III su 37.8 5.2E+02 0.011 27.4 11.7 33 103-136 248-280 (824)
468 smart00386 HAT HAT (Half-A-TPR 37.8 36 0.00078 17.5 2.2 9 191-199 5-13 (33)
469 PHA03100 ankyrin repeat protei 37.8 3.9E+02 0.0084 25.9 12.8 156 108-277 37-203 (480)
470 KOG4567 GTPase-activating prot 37.4 2.5E+02 0.0055 25.2 7.9 71 85-163 263-343 (370)
471 cd08819 CARD_MDA5_2 Caspase ac 37.4 1.4E+02 0.0031 20.8 7.2 66 227-298 21-86 (88)
472 cd08315 Death_TRAILR_DR4_DR5 D 37.2 1.5E+02 0.0033 21.1 8.4 74 17-95 21-94 (96)
473 KOG2659 LisH motif-containing 37.1 2.6E+02 0.0057 23.8 9.3 55 178-233 70-128 (228)
474 KOG1550 Extracellular protein 37.0 4.4E+02 0.0095 26.3 24.4 119 186-309 262-395 (552)
475 PRK09857 putative transposase; 36.9 3.1E+02 0.0068 24.6 9.5 27 215-241 247-273 (292)
476 KOG2396 HAT (Half-A-TPR) repea 36.7 4.1E+02 0.0088 25.8 36.4 80 48-133 90-170 (568)
477 TIGR00059 L17 ribosomal protei 36.7 1.7E+02 0.0038 21.6 8.0 80 382-461 15-101 (112)
478 PRK13456 DNA protection protei 36.6 2.4E+02 0.0052 23.1 7.3 61 382-444 107-167 (186)
479 KOG3677 RNA polymerase I-assoc 36.2 3.8E+02 0.0082 25.3 13.3 60 175-236 238-300 (525)
480 PF11817 Foie-gras_1: Foie gra 35.8 1.9E+02 0.0042 25.0 7.4 57 248-304 183-244 (247)
481 KOG1586 Protein required for f 35.6 2.9E+02 0.0063 23.8 16.9 56 218-273 164-225 (288)
482 PRK14136 recX recombination re 35.3 3.3E+02 0.0072 24.4 14.8 21 6-26 170-190 (309)
483 PF09670 Cas_Cas02710: CRISPR- 35.1 3.9E+02 0.0084 25.1 11.9 56 75-132 141-198 (379)
484 KOG1308 Hsp70-interacting prot 35.0 41 0.0009 30.3 3.0 90 44-139 129-218 (377)
485 COG5187 RPN7 26S proteasome re 34.8 3.3E+02 0.0072 24.2 13.3 72 58-134 108-186 (412)
486 PF10255 Paf67: RNA polymerase 34.7 2.1E+02 0.0046 27.0 7.6 60 175-235 125-191 (404)
487 PRK05896 DNA polymerase III su 34.5 5E+02 0.011 26.2 11.8 21 115-135 257-277 (605)
488 PF10366 Vps39_1: Vacuolar sor 34.5 1.9E+02 0.004 21.3 7.9 27 382-408 41-67 (108)
489 PF11817 Foie-gras_1: Foie gra 34.4 2.4E+02 0.0052 24.5 7.7 59 211-269 181-244 (247)
490 PF06552 TOM20_plant: Plant sp 33.9 2.6E+02 0.0057 22.8 10.9 42 259-308 96-137 (186)
491 KOG2062 26S proteasome regulat 33.9 5.4E+02 0.012 26.5 16.7 250 188-445 38-306 (929)
492 PF11123 DNA_Packaging_2: DNA 33.8 1.3E+02 0.0029 20.1 4.4 28 155-182 14-41 (82)
493 PRK09462 fur ferric uptake reg 33.4 2.3E+02 0.0051 22.1 7.4 33 259-291 33-65 (148)
494 KOG2471 TPR repeat-containing 33.3 4.3E+02 0.0094 25.6 9.2 132 16-149 227-380 (696)
495 KOG4521 Nuclear pore complex, 33.3 6.8E+02 0.015 27.4 13.6 181 70-268 925-1127(1480)
496 COG2812 DnaX DNA polymerase II 33.3 4.8E+02 0.01 25.7 10.5 92 5-99 164-279 (515)
497 PRK10941 hypothetical protein; 33.3 3.4E+02 0.0074 24.0 10.6 61 348-409 184-244 (269)
498 PRK14949 DNA polymerase III su 33.2 6.3E+02 0.014 27.0 12.3 30 25-54 194-223 (944)
499 PF09454 Vps23_core: Vps23 cor 32.3 1.5E+02 0.0032 19.4 5.9 53 378-431 6-58 (65)
500 PF10255 Paf67: RNA polymerase 32.1 4.5E+02 0.0097 24.9 9.4 60 347-406 124-190 (404)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-62 Score=489.23 Aligned_cols=441 Identities=16% Similarity=0.213 Sum_probs=392.7
Q ss_pred CCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 29 VSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 29 ~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
|+..+|+.++..++ ++.+.|.++|+.| ...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|| ..+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd---vvTy 510 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN---VHTF 510 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHH
Confidence 78888889999884 6778999999998 6688899999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhcc---CCCCCchHhHHHHHHHHH
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNK---DVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~ 183 (481)
+.+|.+|++.|++++|..+|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .++.||..+|+.++.+|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 357899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
+.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 591 -k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 591 -NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred -HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcC
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMG 340 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~ 340 (481)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+ ++.+++++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998875 4588899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHH
Q 042941 341 CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----N-------------------GKLE 397 (481)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~ 397 (481)
+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|++++..|.+ + +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999866432 1 2246
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcC--c--cCCCCccccccccccchhh-ccCccccchh
Q 042941 398 EAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQ--P--QSGQNTRVISKKSDQDREF-LQQPETRRVV 472 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~-~~a~~~r~~~ 472 (481)
+|..+|++|.+.|+.||..||+.++.++...+....+.+.+.... | .+...|..+..-+ +++ ++|..+...|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHH
Confidence 799999999999999999999999987766666666555554332 2 2334455555443 433 4788888888
Q ss_pred ccccc
Q 042941 473 RHQGF 477 (481)
Q Consensus 473 ~~~~~ 477 (481)
.++|+
T Consensus 907 ~~~Gi 911 (1060)
T PLN03218 907 ASLGV 911 (1060)
T ss_pred HHcCC
Confidence 88775
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-61 Score=480.88 Aligned_cols=411 Identities=16% Similarity=0.226 Sum_probs=386.7
Q ss_pred HHHhcC--CChhHHHHHHHhcCC-CCCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh
Q 042941 7 ILREFS--HKRSEMRNKIEECGI-KVSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF 81 (481)
Q Consensus 7 ~~~~~~--~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (481)
.+.+.+ ..|.++++.|.+.|+ +++...+..++..+. +..++|+.+|..|.. ||..+|+.++.+|++.|++
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCH
Confidence 344445 488999999999986 456666667777763 667999999988842 8999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
+.|.++|+.|.+.|+.|| ..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 454 e~A~~lf~~M~~~Gl~pD---~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKAD---CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcc-CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 162 FCNK-DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ--RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 162 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
+.|. .++.||..+|+.+|.+|+ +.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.|
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9975 568999999999999999 99999999999999986 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 319 FLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 319 li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+|.+|++.++ +.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9999988764 5889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042941 396 LEEAHQYYMEMKEKQLLPEPKTDELLQDWSY 426 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 426 (481)
+++|.+++++|.+.|+.||..+|+.++..+.
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999987653
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-62 Score=494.88 Aligned_cols=458 Identities=18% Similarity=0.198 Sum_probs=375.2
Q ss_pred HHHHHHhcC--CChhHHHHHHHhcCCCCCHHHHHHHHHHhh-------------------------------------cC
Q 042941 4 LVDILREFS--HKRSEMRNKIEECGIKVSSELVSEVLSWVR-------------------------------------ND 44 (481)
Q Consensus 4 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------~~ 44 (481)
++..+.+.+ +.|..++..|...|+.|+..+|+.++..+. ++
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 344455554 366666777766676666666665555442 45
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAIN 124 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~ 124 (481)
.+.|.++|+.|. .||..+||++|.+|++.|++++|+++|++|.+.|+.|| ..+|+.++.+|++.|+++.+.+
T Consensus 238 ~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd---~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 238 VVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD---LMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHH
Confidence 567777777763 26778888888888888888888888888888899998 8889999999999999999999
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 042941 125 AFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGI 204 (481)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~ 204 (481)
++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.+.. ||..+||.++.+|+ +.|++++|.++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~-~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE-KNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH-hCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999998863 78899999999999 99999999999999999999
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 205 CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 205 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++++.+|++.|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------------------------------
Q 042941 285 IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI------------------------------------------ 322 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~------------------------------------------ 322 (481)
|.+|++.|+.++|..+|++|.. ++.||..||+.++.+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999988875 466666665555544
Q ss_pred -----------------------Hhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-HCC
Q 042941 323 -----------------------IRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEIS-ENG 375 (481)
Q Consensus 323 -----------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~ 375 (481)
|++.| ++.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 43332 336677777777777777777777777777777777777777777 567
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh---hhhHHHHHHHHHhhcCccCCCCcccc
Q 042941 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSY---NKQFVERQIASLKAHQPQSGQNTRVI 452 (481)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 452 (481)
+.|+..+|++++.+|++.|++++|.+++++|. +.||..+|+.++..+. +.+..+.+.+.+.+..|+++..|..+
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll 697 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHH
Confidence 77777777777777777777777777777773 6777777777777654 33455567778888999999999999
Q ss_pred ccccccchhhccCccccchhcc------cccccCC
Q 042941 453 SKKSDQDREFLQQPETRRVVRH------QGFSFWE 481 (481)
Q Consensus 453 ~~~~~~~~~~~~a~~~r~~~~~------~~~~~~~ 481 (481)
+++|...|+|++|.++|+.|++ +|+||+|
T Consensus 698 ~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 9999999999999999999987 4899985
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-62 Score=484.82 Aligned_cols=457 Identities=15% Similarity=0.193 Sum_probs=421.8
Q ss_pred HHHHHhcC--CChhHHHHHHHhcC-CCCCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC
Q 042941 5 VDILREFS--HKRSEMRNKIEECG-IKVSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR 79 (481)
Q Consensus 5 ~~~~~~~~--~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (481)
+..+.+.+ +.|.+++..|...+ ..|+..+++.++..+. ++.+.+.+++..+ ...|+.||..+|+.++..|++.|
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCC
Confidence 34444444 47888999998764 7899999999999984 6778899999988 56789999999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
+++.|.++|++|.+ || ..+|+.++.+|++.|++++|+.+|++|.+.|+.|+..+|+.++.+|++.|..+.+.+
T Consensus 173 ~~~~A~~lf~~m~~----~~---~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 173 MLIDARRLFDEMPE----RN---LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred CHHHHHHHHhcCCC----CC---eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 99999999999975 47 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc-cCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 160 LMFCN-KDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
++..+ +.+..||..+||.++.+|+ +.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYS-KCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHH-HCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 98774 5678899999999999999 99999999999999975 599999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 79999999
Q ss_pred HHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcC
Q 042941 319 FLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-NGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 319 li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 394 (481)
+|.+|++.| ++.+++++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.+|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 999998875 5589999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccccccccchhhccCccccch
Q 042941 395 KLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRV 471 (481)
Q Consensus 395 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~ 471 (481)
++++|.+++++| ++.|+..+|+.++..+...|..+ .+.+.+.+..|++...|..+.++|.+.|+|++|.++++.
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999876 58999999999999987666544 566777788899999999999999999999999999999
Q ss_pred hccc------ccccCC
Q 042941 472 VRHQ------GFSFWE 481 (481)
Q Consensus 472 ~~~~------~~~~~~ 481 (481)
|+++ |+||+|
T Consensus 554 m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 554 LKRKGLSMHPACTWIE 569 (697)
T ss_pred HHHcCCccCCCeeEEE
Confidence 9986 568874
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-57 Score=461.07 Aligned_cols=440 Identities=16% Similarity=0.180 Sum_probs=380.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC
Q 042941 18 MRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE 95 (481)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 95 (481)
++..+.+.+..++....+.++..+ .++.+.|.++|+.|. .||..+|+.+|.+|++.|++++|+++|++|...|
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 333333334444444444555544 245566777777663 3688889999999999999999999999998888
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhH
Q 042941 96 TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSF 175 (481)
Q Consensus 96 ~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 175 (481)
+.|| ..+|+.++++|+..+++..+.+++..+.+.|+.|+..+++.|+.+|++.|+++.|.++|+++.. ||..+|
T Consensus 183 ~~Pd---~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~ 256 (857)
T PLN03077 183 VRPD---VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISW 256 (857)
T ss_pred CCCC---hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchh
Confidence 8888 8889999999888888888999999888889899999999999999999999999999999864 799999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 176 ~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
|.+|.+|+ +.|++++|.++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++++.+|++
T Consensus 257 n~li~~~~-~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYF-ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH---HHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV---FGL 332 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~~ 332 (481)
.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.++. .++
T Consensus 336 ~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 336 LGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred cCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 9999999999999964 689999999999999999999999999999999999999999999999887654 788
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------------------------C------
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG------------------------------N------ 376 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------~------ 376 (481)
++.+.+.|+.|+..+|+.++.+|+++|++++|.++|++|.+.+ +
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t 491 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVT 491 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhH
Confidence 8888899999988888888888888888888888877664421 1
Q ss_pred -----------------------------------------------------------CCCHHHHHHHHHHHHhcCCHH
Q 042941 377 -----------------------------------------------------------GPDRSSYTALIHALFLNGKLE 397 (481)
Q Consensus 377 -----------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~ 397 (481)
.||..+||++|.+|++.|+.+
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHH
Confidence 356677888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcC---c--cCCCCccccccccccchhhccCccccchh
Q 042941 398 EAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQ---P--QSGQNTRVISKKSDQDREFLQQPETRRVV 472 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~r~~~ 472 (481)
+|.++|++|.+.|+.||..||+.++..+...|..+++.+.+.+.. + .+...|..+..++.+.|++++|.++-+.|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999998887776654 2 33457788899999999999999987777
Q ss_pred c
Q 042941 473 R 473 (481)
Q Consensus 473 ~ 473 (481)
.
T Consensus 652 ~ 652 (857)
T PLN03077 652 P 652 (857)
T ss_pred C
Confidence 3
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6e-56 Score=441.17 Aligned_cols=420 Identities=18% Similarity=0.229 Sum_probs=389.4
Q ss_pred HHHHHHhcC--CChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC
Q 042941 4 LVDILREFS--HKRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR 79 (481)
Q Consensus 4 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (481)
++..+.+.+ ..+.+++..|.+.|+.|++.+++.++..+ .++.+.|.++|+.|. .||..+|+++|.+|++.|
T Consensus 129 ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCc
Confidence 334444444 25789999999999999999999999998 478899999999984 279999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
++++|.++|++|.+.|+.|+ ..+|..++.+++..|+.+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 280 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAE---PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 160 LMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
+|+.+.. +|..+||.++.+|+ +.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+
T Consensus 281 vf~~m~~---~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 281 VFDGMPE---KTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHhCCC---CChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9998864 69999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF 319 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 319 (481)
.||..+|++++.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999964 69999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHH---HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 320 LDIIRTGEEV---FGLLESMRK-MGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 320 i~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+.+|++.+.. .++++.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 9999988654 788999976 599999999999999999999999999998765 577999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhhhhHHHHHHHHHhhcCcc
Q 042941 396 LEEAHQYYMEMKEKQLLPE-PKTDELLQDWSYNKQFVERQIASLKAHQPQ 444 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
++.|..+++++.+ +.|+ ..+|..++..+.+.|..+++.+.+......
T Consensus 510 ~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 510 LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999874 5665 578999999999999999888777665543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.1e-24 Score=225.07 Aligned_cols=414 Identities=12% Similarity=0.013 Sum_probs=215.9
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.+.|..+++.+.... +++..++..+...+...|++++|...|+++.+. ++.+...+..+...+...|++++|
T Consensus 445 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 45555555555554322 234556666666666666666666666666554 222245555566666666666666
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
...|+.+.+.+ +.+..++..+...+.+.|+.++|..++.++....+.+...+..+...+. ..|++++|..+++.+...
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH-HCCCHHHHHHHHHHHHHc
Confidence 66666665543 2345555566666666666666666665554444445555555566666 566666666666665543
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYN 282 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (481)
. +.+..+|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.+.... +..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 2 2244556666666666666666666666665543 334455555666666666666666666665554322 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 359 (481)
.+...+...|++++|..+++.+.+.+. ++...+..+...+...++ +...++.+.+. .|+..++..+...+.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 555555556666666666655555432 233334444444433322 23333333332 233344444555555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhH--HHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQF--VERQIAS 437 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~~~~~ 437 (481)
++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. ++++..+..+...+...+. +...++.
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~ 828 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEK 828 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5555555555555432 2244455555555555555555555555555432 2233333333333322222 2222333
Q ss_pred HhhcCccCCCCccccccccccchhhccCccccchh
Q 042941 438 LKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVV 472 (481)
Q Consensus 438 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~ 472 (481)
+.+..|+++..+..++.+|...|++++|.+..+.+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444555555555555555444433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2.1e-24 Score=225.18 Aligned_cols=441 Identities=11% Similarity=0.053 Sum_probs=357.9
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
.+..++..+... .+.++..+..+...+ .++.+.|...|+.+.... +.+...+..+...+...|++++|.+.|+.+
T Consensus 449 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 449 KALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555432 233444554444444 578899999999986543 246778888999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc
Q 042941 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN 171 (481)
Q Consensus 92 ~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 171 (481)
.+. ++.+..++..+...+...|+.++|...++++.+.+ +.+...+..+...+...|++++|..+++.+....+.+
T Consensus 526 ~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 600 (899)
T TIGR02917 526 LTI----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600 (899)
T ss_pred HHh----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 876 33347889999999999999999999999998765 3466778889999999999999999999987777888
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
...|..+...+. ..|++++|...|+.+.+... .+...+..+..++.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 601 ~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 601 PEAWLMLGRAQL-AAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 899999999999 99999999999999987643 356778889999999999999999999998874 556889999999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH--
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV-- 329 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-- 329 (481)
.+...|++++|..+++.+.+.++ .+...+..+...+...|++++|...|+.+...+ |+..++..+...+...++.
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998764 377788889999999999999999999998875 4446666677777665544
Q ss_pred -HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 330 -FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 330 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+... ++...++.+...+...|+ .+|+.+++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 55555555543 56788899999999999999999999999998753 578899999999999999 889999999987
Q ss_pred CCCCCC-HhHHHHHHHHHhhhhH---HHHHHHHHhhcCccCCCCccccccccccchhhccCccccchhc
Q 042941 409 KQLLPE-PKTDELLQDWSYNKQF---VERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVR 473 (481)
Q Consensus 409 ~~~~p~-~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~ 473 (481)
. .|+ +.++..+...+...|. +.+.++.+.+..|.++..+..++.++...|++++|.++.+.|.
T Consensus 832 ~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 832 L--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred h--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5 343 3444444444444444 4455667777778888999999999999999999998776653
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.7e-22 Score=184.14 Aligned_cols=303 Identities=14% Similarity=0.029 Sum_probs=243.1
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHhHHHHHHHH
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---IEDFQGLLSAL 148 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~ 148 (481)
...+...|++++|...|+++.+. ++.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 44556788999999999999886 334477888899999999999999999998887532221 24577888899
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH----HhHHHHHHHHHhcCCH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV----VSFSCIISCYSKARNL 224 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~~~~ 224 (481)
...|+++.|..+|+++....+++..+++.++..+. ..|++++|.+.++.+...+..++. ..+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999998876656677888999999999 899999999999998876544322 2345677778889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|...|++++|...++.+
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988764 44566778888899999999999999999987644333566788889999999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 042941 305 LQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYT 384 (481)
Q Consensus 305 ~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (481)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++
T Consensus 276 ~~~----------------------------------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 276 LEE----------------------------------YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred HHh----------------------------------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 764 234445577888899999999999999988875 58888888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 385 ALIHALFL---NGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 385 ~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
.++..+.. .|+.++++.++++|.++++.|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88887765 568999999999999888777775
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-20 Score=177.03 Aligned_cols=294 Identities=12% Similarity=0.065 Sum_probs=233.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC
Q 042941 20 NKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS 99 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 99 (481)
+..++....++...+..+.....++.+.|+..|..+.... +.+..++..+...+...|++++|..+++.+...+..++
T Consensus 26 ~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 26 QDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 3344555566666677777767789999999999997543 24677899999999999999999999999988643222
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc-----hHh
Q 042941 100 LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN-----TKS 174 (481)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ 174 (481)
.....++..+...+...|++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+....+.+ ...
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 2223578888999999999999999999998753 4567889999999999999999999998865432222 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+..+...+. ..|++++|...|+++.+.... +...+..+...+.+.|++++|.++++++...+......++..++.+|.
T Consensus 183 ~~~la~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 183 YCELAQQAL-ARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 556777778 899999999999999876432 456778888999999999999999999997642223467888999999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042941 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI 322 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 322 (481)
..|++++|...++++.+.. |+...+..+...+.+.|++++|..+++++.+. .|+..++..++..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 9999999999999998864 56667788999999999999999999998876 3555555544443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.2e-17 Score=175.53 Aligned_cols=417 Identities=10% Similarity=0.018 Sum_probs=284.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH------------HHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL------------LIL 109 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~------------~~l 109 (481)
.++.++|+..|+...... +.+..++..+..++.+.|++++|+..|++..+.. |+......+ ...
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHH
Confidence 477788888888886543 2367888888888888899999999888887652 322111112 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++.....|.+...+..+...+. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~--~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR--QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCH
Confidence 345667888899999998888764 2356667778888888899999998888866555556666666666654 4567
Q ss_pred HHHHHHHHHHHhcCCc--------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 190 REAERVWMEMSQRGIC--------YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
++|..+++.+...... .....+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 8888887765432100 012234556677888899999999999988864 3456677788888999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---------HHHHHHHhchhHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY---------HAFLDIIRTGEEVFGL 332 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---------~~li~~~~~~~~~~~~ 332 (481)
|...++++.+.... +...+..+...+...++.++|...++.+......++...+ ......+...++..+.
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999998875433 4444444555567788999999988876544332222211 1222334344443333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
...+.. .+.+...+..+...+.+.|++++|+..|++..+... .+...+..+...|...|++++|++.++...+. .
T Consensus 593 ~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~ 667 (1157)
T PRK11447 593 EALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT--A 667 (1157)
T ss_pred HHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 333332 345666777888899999999999999999988643 36778889999999999999999999987753 4
Q ss_pred CCH-hHHHHHHHHHhhhhHHHHHH---HHHhhcCccCCC------CccccccccccchhhccCccccchh
Q 042941 413 PEP-KTDELLQDWSYNKQFVERQI---ASLKAHQPQSGQ------NTRVISKKSDQDREFLQQPETRRVV 472 (481)
Q Consensus 413 p~~-~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~r~~~ 472 (481)
|+. .+...+...+...|..+++. +.+.+..|..+. .+..++.++...|++++|.+..+..
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543 33333444444555555555 444444444433 4445688889999999988875543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.4e-17 Score=162.10 Aligned_cols=321 Identities=9% Similarity=-0.005 Sum_probs=161.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.+.|+.++........ -+...+..++......|+++.|...|+.+.+. +|.+...+..+...+...|++++|
T Consensus 56 g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~----~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV----NVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred CCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHH
Confidence 444555555555443321 22333444444444555555555555555544 222344555555555555555555
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
+..++++.+.. +.+...+..+..++...|++++|...+..+....|.+...+..+. .+. ..|++++|...++.+...
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~-~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL-NKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-HcCCHHHHHHHHHHHHhc
Confidence 55555555432 123444455555555555555555555543322222333332222 234 455555555555555444
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH----HHHHHHHHHHcCCCCCh
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD----AISLMKSMEEKGVAPNV 278 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~ 278 (481)
...++...+..+...+...|++++|...++...... +.+...+..+...+...|++++ |...|++..+..+. +.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~ 284 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NV 284 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CH
Confidence 222222333333444555555555555555555443 2334444555555555555553 45555555544322 34
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (481)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---------------------------------P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATH---------------------------------PDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHC
Confidence 455555555555555555555555554432 22334455566666677
Q ss_pred CChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 359 RQFGNVFKVWNEISENGNGPDR-SSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 332 G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 332 GQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777776666542 332 22333455566677777777777766554
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=3.4e-17 Score=160.98 Aligned_cols=336 Identities=10% Similarity=-0.007 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
..-..-++..+.+.|++++|..+++..... .+.....+..++.+....|+++.|+..++++.+.. +.+...+..+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~l 116 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLV 116 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 334556677788999999999999999887 33336677777788888999999999999998865 3356778888
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
..++...|++++|...+++.....|.+...+..+...+. ..|++++|...++.+......+ ...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCH
Confidence 899999999999999999876666677888888888888 8999999999999887664432 2233333 347888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE----ARQA 300 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~ 300 (481)
++|...++.+.+....++...+..+..++...|++++|...++++.+.... +...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 999999999877643344455566677888999999999999999887543 67777888889999999886 6777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
|+...+.. +.+...+..+...+...|++++|...+++..+... .+.
T Consensus 273 ~~~Al~l~---------------------------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~ 318 (656)
T PRK15174 273 WRHALQFN---------------------------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLP 318 (656)
T ss_pred HHHHHhhC---------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 77766542 33456788889999999999999999999988643 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhhhhHHHHHH---HHHhhcCccC
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE-LLQDWSYNKQFVERQI---ASLKAHQPQS 445 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~---~~~~~~~~~~ 445 (481)
..+..+..++.+.|++++|+..|+++... .|+...+. .+...+...|..+++. +.+.+..|+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 67888899999999999999999999875 45543332 2333444555555444 4555555654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=8e-17 Score=158.90 Aligned_cols=384 Identities=9% Similarity=-0.032 Sum_probs=203.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++++.|+..|+..... .|+...|..+..+|.+.|++++|++.++...+. ++....++..+..++...|++++|
T Consensus 141 ~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l----~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL----DPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred CCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6778888888877543 356677888888888888888888888888775 333467778888888888888888
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCC----------------------------Cc-hH
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP----------------------------FN-TK 173 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~~-~~ 173 (481)
+.-|......+...+.. ...++..+........+...+..-....+ +. ..
T Consensus 214 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 87776554432111111 11111111110011111111111000000 00 00
Q ss_pred hHHHHHHHHH--HhcCCHHHHHHHHHHHHhcC-Ccc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042941 174 SFNIILNGWC--NIIGSSREAERVWMEMSQRG-ICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249 (481)
Q Consensus 174 ~~~~l~~~~~--~~~~~~~~a~~~~~~~~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (481)
.+..+...+. ...+++++|...|+...+.+ ..| ....+..+...+...|++++|...++...... +.+...|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 0000000000 02356777777777777654 122 33456666677777788888888887777653 2335567777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch---
Q 042941 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG--- 326 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 326 (481)
...+...|++++|...|+++.+.... +...|..+...+...|++++|...|++..+.... +...+..+...+.+.
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCH
Confidence 77777778888888888777765433 5666777777777778888888888777665311 223333333333222
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHhcCCHHHHH
Q 042941 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSS------YTALIHALFLNGKLEEAH 400 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~ 400 (481)
+++...++...+.. +.+...++.+...+...|++++|.+.|++........+... ++..+..+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 23333333333321 22344555555555555666666666555554321111110 111111222345555666
Q ss_pred HHHHHHHHCCCCCCH-hHHHHHHHHHhhhhHHHHHHHHHhh
Q 042941 401 QYYMEMKEKQLLPEP-KTDELLQDWSYNKQFVERQIASLKA 440 (481)
Q Consensus 401 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (481)
+++++.... .|+. ..+..+...+...|..+++++.+.+
T Consensus 529 ~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 529 NLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 655555443 2322 2333444444444444444444333
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=9.5e-16 Score=161.22 Aligned_cols=411 Identities=11% Similarity=0.005 Sum_probs=286.5
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHH------------HHHHHHhccC
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYH------------TMIAILGKVR 79 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g 79 (481)
.|...++...+... -++..+..+-..+ .++.++|+..|+......+-.++...|. .....+.+.|
T Consensus 287 ~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 287 KAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 45555555443322 1344433333333 5788999999999875443223322222 2244677899
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
++++|...|+++.+. ++.+..++..+...+...|++++|++.|+++.+.. +.+...+..+...+. .++.++|..
T Consensus 366 ~~~eA~~~~~~Al~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 366 NLAQAERLYQQARQV----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 999999999999987 33447788889999999999999999999999764 234566777777775 457899999
Q ss_pred HHhhccCCCCC---------chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 160 LMFCNKDVFPF---------NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 160 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
+++.+....+. ....+..+...+. ..|++++|+..|++..+.... +...+..+...|.+.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~-~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALE-NQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88765432111 1223455667777 899999999999999887543 556777888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh---------hHHHHHHHHHhcCCHHHHHHHH
Q 042941 231 FDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV---------TYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~g~~~~a~~~~ 301 (481)
++.+.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...|++++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99998753 3455555556666788999999999998875432222221 1234566788899999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP 378 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 378 (481)
+. .+++...+..+...+... .++...++...+.. +.+...+..+...+...|++++|++.++...+... .
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-D 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-C
Confidence 82 123444445555555444 45566666666653 45678889999999999999999999998876432 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---CHhHHHHHHHHHhhhhHHHHHHHHHhhc
Q 042941 379 DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL--P---EPKTDELLQDWSYNKQFVERQIASLKAH 441 (481)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (481)
+...+..+..++...|++++|.++++++....-. | +...+..+...+...|..+++++.+++.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777888999999999999999999875322 2 1134444455566666666666554443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=2.5e-17 Score=148.48 Aligned_cols=374 Identities=13% Similarity=0.095 Sum_probs=286.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH-H
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF-Q 142 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 142 (481)
-..+|+.+..++-..|++++|+.+|+.+.+. +|+ ....|..+..++...|+.+.|.+.|....+.+ |+.... .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~--fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPK--FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 4678888999999999999999999999987 333 47889999999999999999999999988754 555433 3
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKA 221 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~ 221 (481)
.+...+...|++++|...+.+.....+--...|+-|.-.+- ..|+...|++.|++.... +|+ ...|-.|...|...
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~-~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFN-AQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA 265 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHh-hcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence 45566667888999999887755544545567888888877 899999999999998876 333 45788889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
+.+++|...|....... +-....+..+...|...|.++.|...|++..+..+. -...|+.|..++-..|++.+|.+.|
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999998887753 345667888888899999999999999999886443 4568999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPT-NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 377 (481)
.+....... .....+.|-..+...+ ++..++....+ +.|. ...++.|...|-.+|++++|+..+++..+ +.
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 988775322 2345566666665544 44444444433 2333 34678888899999999999999998887 45
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhhhHHHH---HHHHHhhcCccCCCCcccc
Q 042941 378 PDR-SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWSYNKQFVER---QIASLKAHQPQSGQNTRVI 452 (481)
Q Consensus 378 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l 452 (481)
|+. ..|+.+...|-..|+.+.|++.+.+.+. +.|.. ..++-|...+...|...+ ..+......||.|+++-.+
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 664 4888899999999999999999998886 45654 345556666666665554 4467778888988888776
Q ss_pred ccc
Q 042941 453 SKK 455 (481)
Q Consensus 453 ~~~ 455 (481)
.-.
T Consensus 497 lh~ 499 (966)
T KOG4626|consen 497 LHC 499 (966)
T ss_pred HHH
Confidence 644
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=5.1e-15 Score=148.87 Aligned_cols=408 Identities=11% Similarity=0.019 Sum_probs=276.9
Q ss_pred CCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHH
Q 042941 27 IKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ 104 (481)
Q Consensus 27 ~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (481)
.+.++..+..-+... .++.++|++++....... +.+...+..+...+...|++++|..+|++..+. ++.+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~ 84 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDD 84 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH
Confidence 345555555554443 588888998888875322 356667889999999999999999999998876 344477
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....|.+...+..+...+.
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 77888888899999999999999988764 33555 7788888999999999999999877767777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccH------HhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH--
Q 042941 185 IIGSSREAERVWMEMSQRGICYDV------VSFSCIISCYS-----KARNL---HKVLRLFDQMKRM-GIECDRK-VY-- 246 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-- 246 (481)
..+..+.|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 162 ~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 162 NNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 88899989988876654 2221 11122222222 12233 6778888887754 1122221 11
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 042941 247 --NAVIHALAKGRLVKDAISLMKSMEEKGVA-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP---TIRTYHAFL 320 (481)
Q Consensus 247 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li 320 (481)
...+..+...|++++|...|+.+.+.+.+ |+. .-..+..+|...|++++|+.+|+++.+..... .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11133456778899999999998877532 322 22235668888999999999999887653211 123344444
Q ss_pred HHHhch---hHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042941 321 DIIRTG---EEVFGLLESMRKMG-----------CQPT---NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSY 383 (481)
Q Consensus 321 ~~~~~~---~~~~~~~~~~~~~~-----------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 383 (481)
.++... +++...++.+.+.. -.|+ ...+..+...+...|++++|++.++++.... +.+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 445443 44455566555442 1123 2345567778889999999999999988764 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH----HHhhhhHHHHHHHHHhhcCccCCCCcc
Q 042941 384 TALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD----WSYNKQFVERQIASLKAHQPQSGQNTR 450 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
..+...+...|++++|++.+++... ..|+...+..... ...+-..++..++.+.+..|+++.+..
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8899999999999999999999887 4577644332222 234556666777888888888765443
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-16 Score=143.75 Aligned_cols=412 Identities=13% Similarity=0.102 Sum_probs=309.7
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++++.|++.....-.+.+ .+....-.+-.++.+..+.+....--....+. ++....+|..+...+-..|+++.
T Consensus 61 ~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~----~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK----NPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred ccCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhhhhhhhhc----cchHHHHHHHHHHHHHHhchHHH
Confidence 3566677766655533332 12233333444556666666655544444443 34447899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|+..|+.+.+... -....|..+..++...|+.+.|.+.|....... |+.....+-+..+.+..|+.++|...|.+..+
T Consensus 135 al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 135 ALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 9999999998652 257889999999999999999999998755433 34333333333333378999999999988877
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.... -...|+.|...+..+|+...|+.-|++..+.+ +--...|-.|...|...+.++.|...|.+.....+. ....+
T Consensus 213 ~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~ 289 (966)
T KOG4626|consen 213 TQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAH 289 (966)
T ss_pred hCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhc
Confidence 6322 34578889999999999999999999998864 334568999999999999999999999998876443 56778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhchhHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPT-IRTYHAFLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
..+...|...|..+.|+..|++..+.. |+ ...|+.+..++...|++ ...+....... +-.....+.|...|..
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE 366 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 888888999999999999999998864 44 46788888888777766 44444444432 2335678889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhhhhHHHHHH
Q 042941 358 WRQFGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWSYNKQFVERQI 435 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~~~ 435 (481)
.|.++.|..+|....+. .|. ...++.|...|-+.|++++|+..|++... +.|+. ..++-+-..+...|....++
T Consensus 367 ~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred hccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999998874 344 34788999999999999999999999885 67776 34555555666666666555
Q ss_pred ---HHHhhcCccCCCCccccccccccchhhccCccccch
Q 042941 436 ---ASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRV 471 (481)
Q Consensus 436 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~ 471 (481)
....+.+|...++...|+.+|...|+..+|+...+.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 567778888889999999999999998888766543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1e-14 Score=144.05 Aligned_cols=382 Identities=11% Similarity=0.004 Sum_probs=224.7
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
.|...+....+ ..|++..+..+-..+ .++++.|+..+....... +.+..+|..+..++...|++++|..-|...
T Consensus 145 ~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 145 KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455544443 345555555554444 488999999999987543 246789999999999999999999888765
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---------------------------cCCCCCH-HhHHH
Q 042941 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR---------------------------FKFAVGI-EDFQG 143 (481)
Q Consensus 92 ~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------------~~~~~~~-~~~~~ 143 (481)
....-. + ......++..+........+...++.-.. ....+.. ..+..
T Consensus 221 ~~~~~~-~---~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 221 CIIDGF-R---NEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHhCCC-c---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 443110 1 11111111111110001111111100000 0000000 00000
Q ss_pred HHHH---HHcCCChhhHHHHHhhccCC---CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH
Q 042941 144 LLSA---LCRYKNVQDAEHLMFCNKDV---FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC 217 (481)
Q Consensus 144 ll~~---~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 217 (481)
+... ....+++++|.+.|+..... .+.....++.+...+. ..|++++|+..++........ ....|..+...
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~ 374 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPR-VTQSYIKRASM 374 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 1000 01235677777777664321 2334455666666666 777777777777777665221 34466666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+...|++++|...|+...+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777776653 445667777777777777777777777777766433 455666677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCChhHHHHHH
Q 042941 298 RQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQP-----TN-DTYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
+..|++..+.. +.+...+..+-..+...+ ++...++...+..... +. ..++..+..+...|++++|.+++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77777776542 113444444444444433 3344444444332111 11 11222233344569999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 369 NEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
++...... .+...+..+...+.+.|++++|+++|++..+.
T Consensus 532 ~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 532 EKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99887643 34557889999999999999999999998764
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.1e-14 Score=124.25 Aligned_cols=430 Identities=14% Similarity=0.117 Sum_probs=224.3
Q ss_pred HHHHHHhcC-CChhHHHHHHHhcCCCCCHHHHHHHHHHhh--cCHHHHHHHHHHhh--hCCC------------------
Q 042941 4 LVDILREFS-HKRSEMRNKIEECGIKVSSELVSEVLSWVR--NDWEAAFTFFLWAG--KQSG------------------ 60 (481)
Q Consensus 4 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~--~~~~------------------ 60 (481)
|..++++-. .++-.+.+.|++.|++.++..-..++...+ +..+--..-++|.. +..|
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E 201 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE 201 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh
Confidence 334444433 477888999999999999999888877642 22111111112221 1111
Q ss_pred -CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 61 -YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 61 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
.+-+..+|..+|.++++.-..+.|.++|++......+.+ ..+||.+|.+-.-.. ..++..+|......||..
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~---~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVY---REAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheee---HHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 112455666666666666666666666666655555555 566666655432221 145556666555666666
Q ss_pred hHHHHHHHHHcCCChhhHHHHH----hhccC-CCCCchHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhc--C--Cc---c
Q 042941 140 DFQGLLSALCRYKNVQDAEHLM----FCNKD-VFPFNTKSFNIILNGWCNIIGSSRE-AERVWMEMSQR--G--IC---Y 206 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~----~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~~~--g--~~---~ 206 (481)
|+|.++.+..+.|+++.|...+ -+++. |+.|...+|..+|..++ +.++..+ +..++.++... | ++ |
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~-re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK-RESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc-ccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 6666666666666655544333 22332 45566666666666666 4444422 33333333221 1 11 1
Q ss_pred -cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 042941 207 -DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IECD---RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 207 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (481)
|..-|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 22334555566666666665555544333211 1222 123344555555556666666666666655555666
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---------HH---------------HHHHH
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---------EV---------------FGLLE 334 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---------~~---------------~~~~~ 334 (481)
.+...++++.--.|.++-.-+++..++..|..-....-.-++..+++.. +. .....
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666666766666777666666666666553333322222222222210 00 11111
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 335 SMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN----GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
.+.+ ...+....+.+.-.+.|.|..++|.+++..+.+.+- .|......-++..-.+......|..+++-|...+
T Consensus 514 R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2222 233444556666667777777777777777754321 2333333355566666777777777777775554
Q ss_pred CCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCc
Q 042941 411 LLPEPKTDELLQDWSYNKQFVERQIASLKAHQP 443 (481)
Q Consensus 411 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (481)
...-...-+.+...+.-.+...+++..+....|
T Consensus 592 ~~~~E~La~RI~e~f~iNqeq~~~ls~l~~L~~ 624 (625)
T KOG4422|consen 592 LPICEGLAQRIMEDFAINQEQKEALSNLTALTS 624 (625)
T ss_pred chhhhHHHHHHHHhcCcCHHHHHHHhhhhhhcC
Confidence 332222333444444444555555555555443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=4.2e-15 Score=149.51 Aligned_cols=398 Identities=10% Similarity=0.015 Sum_probs=286.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+.....-.+.+....|+.++|+++|.+.... ++.....+..+...+...|++++|...|+...+.. +.+...+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45556666777888899999999999999763 23336779999999999999999999999998764 34567777
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+..++...|++++|...++++....|.+.. +..+...+. ..|+.++|+..++++....+. +...+..+..++...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 8889999999999999999998776777777 888888888 999999999999999987544 4555666778888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHc-----CCCh---HHHHHHHHHHHHc-CCCCChh-hHH----
Q 042941 223 NLHKVLRLFDQMKRMGIECDR------KVYNAVIHALAK-----GRLV---KDAISLMKSMEEK-GVAPNVV-TYN---- 282 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~---- 282 (481)
..+.|++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998876554 2221 112223333222 2234 7788888888754 2223322 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh---chhHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQRGIS-PTIRTYHAFLDIIR---TGEEVFGLLESMRKMGCQP---TNDTYIMLIKKF 355 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 355 (481)
..+.++...|++++|...|+.+.+.+.. |+.... .+...|. +.+++...++.+.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456779999999999999887632 433211 1233443 3455677777766543111 134566677788
Q ss_pred HhcCChhHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHH
Q 042941 356 SRWRQFGNVFKVWNEISENGN-----------GPD---RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDEL 420 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ 420 (481)
...|++++|...++.+..... .|+ ...+..+...+...|+.++|+++++++... .|+. ..+..
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~ 398 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRID 398 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 999999999999999987531 123 234566778899999999999999999875 4544 33444
Q ss_pred HHHHH---hhhhHHHHHHHHHhhcCccCCCCccccccccccchhhccCccccchhcc
Q 042941 421 LQDWS---YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRH 474 (481)
Q Consensus 421 l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~ 474 (481)
+...+ ++...+.+.++.+....|+++..+..++.++...|+|++|.++.+.+.+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444 4445555777788888899988899999999999999999988776654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.7e-13 Score=133.26 Aligned_cols=401 Identities=10% Similarity=0.053 Sum_probs=248.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 042941 34 VSEVLSWVRNDWEAAFTFFLWAGKQSGYAHST--REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIR 111 (481)
Q Consensus 34 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~ 111 (481)
...++..-.++.+.|+..|+.+.+.. |+. ..+ .++..+...|+.++|+..+++.. .|++........+..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 33344433578889999998886544 332 233 77888888899999999998887 334444555666677
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
.+...|++++|+++|+++.+... -++..+..++..+...++.++|++.++++....+ +...+..++..+. ..++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~-~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNR-ATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHH-hcchHHH
Confidence 88888999999999999988653 3466777778888999999999999988766543 4444433433333 3566656
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHH---------------------------------------
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFD--------------------------------------- 232 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------------------------------------- 232 (481)
|+..++++.+.... +...+..+..++.+.|-...|.++..
T Consensus 188 AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 89999888887432 45555555566665554444443333
Q ss_pred ---------HHHHc-CCCCCH-H----HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 233 ---------QMKRM-GIECDR-K----VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 233 ---------~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
.+... +-.|.. . ...-.+-++...|++.++.+.|+.+...+.+....+-.++..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 22221 111211 1 11234455666777777777787777776554555667777777777888888
Q ss_pred HHHHHHHHHCCC-----CCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHH
Q 042941 298 RQAFDEMLQRGI-----SPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGC-----------QPT--N-DTYIMLIKKF 355 (481)
Q Consensus 298 ~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~ 355 (481)
..+|+.+..... .++......|.-++...+ ++..+++.+.+... .|+ - ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888877755431 223333455555654443 44556666655210 122 1 1233455666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHH---HhhhhHH
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDE-LLQDW---SYNKQFV 431 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~---~~~~~~~ 431 (481)
...|++.+|++.++.+....+ -|......+...+...|++.+|.+.++.... ..|+..... ..... +.+-..+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHH
Confidence 777788888888877766533 3677777777777777888888877766554 345543322 22222 2333444
Q ss_pred HHHHHHHhhcCccCCCCc
Q 042941 432 ERQIASLKAHQPQSGQNT 449 (481)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (481)
+..++.+.+..|+++..-
T Consensus 504 ~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 504 ELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHhhCCCchhHH
Confidence 455666677777766433
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=6.8e-14 Score=138.34 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
.+.-.-+-...+.|+++.|++.|++..+. ++.+......++..+...|+.++|+..+++..... .........+.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~----~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKA----GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhh----CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 33344444566899999999999999987 44333333388888889999999999999988311 22333444446
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 225 (481)
..+...|++++|.++|+++....|.+...+..++..+. ..++.++|++.++.+... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 78899999999999999988877888888888888888 899999999999999877 455555544444454566676
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
+|++.++++.+.. +-+...+..++.++.+.|-...|.++..+
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 7999999999984 45677777888888888877777666554
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=3e-12 Score=129.48 Aligned_cols=407 Identities=14% Similarity=0.066 Sum_probs=223.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHH-HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh-cCCHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTM-IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-VHDVGR 121 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-~~~~~~ 121 (481)
..+.|.+.++ . +.....|...+.... ...|.+.|+++.|++++.++.+.+ +.+......+...|.. .++ +.
T Consensus 162 q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~----pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 162 QLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN----TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhhCH-HH
Confidence 3355555555 2 222223344444444 788888888888888888888873 2235556667677776 355 77
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCC--CchHhH--H---------------------
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP--FNTKSF--N--------------------- 176 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~--~--------------------- 176 (481)
+..+++. .++.++..+..+...|.+.|+.++|.+++.+++...+ |...++ +
T Consensus 235 a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 7777543 2335777788888999999999999999887643211 111110 0
Q ss_pred -------HHHHHHH--------------------------------------------------------------HhcC
Q 042941 177 -------IILNGWC--------------------------------------------------------------NIIG 187 (481)
Q Consensus 177 -------~l~~~~~--------------------------------------------------------------~~~~ 187 (481)
.++..+. .+.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 0011122 0223
Q ss_pred CHHHHHHHHHHHHhc-C-CcccHHhHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-C-
Q 042941 188 SSREAERVWMEMSQR-G-ICYDVVSFSCIISCYSKARN---LHKVLRL----------------------FDQMKRM-G- 238 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~-g-~~~~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~~~~~-~- 238 (481)
+.++|.++|+..... + ..++.....-++..|.+.+. ..++..+ ....... +
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 444444444433321 0 11122222234444444433 1222111 1111110 1
Q ss_pred CCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042941 239 IEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY 316 (481)
Q Consensus 239 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 316 (481)
.++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.... |+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHH
Confidence 123 55666767766665 67777887776666542 444333333444457788888888887765542 333333
Q ss_pred HHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042941 317 HAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 317 ~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (481)
..+...+.+. ..+...++...+.. +.+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 3333333333 34455555555543 223333333333444557777777777777764 35566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccccccccchhhccCcccc
Q 042941 394 GKLEEAHQYYMEMKEKQLLPEPKTDE-LLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETR 469 (481)
Q Consensus 394 g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r 469 (481)
|++++|+..+++.... .|+..... .+...+...|..+ ..++...+..|+++..+..++.++...|++++|.+..
T Consensus 623 G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777777763 45444332 2323333333333 4455666667777777777777777777777776544
Q ss_pred ch
Q 042941 470 RV 471 (481)
Q Consensus 470 ~~ 471 (481)
+.
T Consensus 701 ~~ 702 (987)
T PRK09782 701 RL 702 (987)
T ss_pred HH
Confidence 43
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=8.5e-13 Score=114.51 Aligned_cols=386 Identities=14% Similarity=0.194 Sum_probs=259.2
Q ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC--Chh-HHHHHHHHHhcCCC----------
Q 042941 31 SELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR--KFD-TAWALIDEMRGGET---------- 96 (481)
Q Consensus 31 ~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~-~a~~~~~~~~~~~~---------- 96 (481)
..+=+.++... .+...++.-+++.| ++.|...+...--.++..-+-.+ ++- --++.|-.|...|-
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 33444555544 35667788888888 66676667666666655433221 111 11222222222110
Q ss_pred ------CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhc-cCCCC
Q 042941 97 ------GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCN-KDVFP 169 (481)
Q Consensus 97 ------~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~ 169 (481)
..-+-|..++..+|.++|+-...+.|.++|++......+.+..+||.+|.+-.-..+ .+++.+| .....
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 001224789999999999999999999999999988888999999999976544333 5566554 44578
Q ss_pred CchHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHc--C--C-
Q 042941 170 FNTKSFNIILNGWCNIIGSSRE----AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHK-VLRLFDQMKRM--G--I- 239 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~--~- 239 (481)
||..|+|+++.+.. +.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ +..++.++... | +
T Consensus 271 Pnl~TfNalL~c~a-kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 271 PNLFTFNALLSCAA-KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CchHhHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 99999999999999 9998865 55677889999999999999999999998887644 55555555532 2 2
Q ss_pred ---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 240 ---ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG----VAPN---VVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 240 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
+.|...|...|..|....+.+.|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 3356778888999999999999998877665321 2222 23356677788888999999999999998888
Q ss_pred CCCHHHHHHHHHHHhchhHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C--------------------hhHHH
Q 042941 310 SPTIRTYHAFLDIIRTGEEV---FGLLESMRKMGCQPTNDTYIMLIKKFSRWR-Q--------------------FGNVF 365 (481)
Q Consensus 310 ~p~~~~~~~li~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------------------~~~a~ 365 (481)
-|+..+...++++....+.+ .++|..+...|...+...-.-++..+++.. + .+...
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888876554433 455555555553333333333333333332 1 11111
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHH
Q 042941 366 KVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK-QLLPEPKTDELLQDW 424 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~ 424 (481)
..-.++.+..+ .....+...-.+.+.|+.++|.+++..+..+ +-.|.....+.+...
T Consensus 510 ~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 510 SQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred hhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 22233444444 4556777777889999999999999998555 344555556655443
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.3e-12 Score=121.37 Aligned_cols=284 Identities=12% Similarity=0.040 Sum_probs=186.4
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH--HHHHHHHcCCChh
Q 042941 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ--GLLSALCRYKNVQ 155 (481)
Q Consensus 78 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~ 155 (481)
.|+++.|.+.+....+..-.| ...+.....+....|+++.|...+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 577777777776655531111 222333344446777788888877777653 34433222 3356677777777
Q ss_pred hHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH-------HhHHHHHHHHHhcCCHHHHH
Q 042941 156 DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV-------VSFSCIISCYSKARNLHKVL 228 (481)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~ 228 (481)
.|...++......|.+......+...|. +.|++++|..++..+.+.+..++. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~-~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYI-RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777766666667777777777777 777777777777777776544222 12223333333334445555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.. -.++.+.+..++.+++....+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 555554332 2446666677777777777777777777777664 23331 122333344577777777777666542
Q ss_pred CCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 309 ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIH 388 (481)
Q Consensus 309 ~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (481)
+-|...+..+...|.+.+++++|.+.|+...+. .|+...|..+..
T Consensus 325 ---------------------------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~ 369 (398)
T PRK10747 325 ---------------------------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLAD 369 (398)
T ss_pred ---------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 345667888999999999999999999999884 589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042941 389 ALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 389 ~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+.+.|+.++|.+++++-..
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998754
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2.4e-12 Score=120.26 Aligned_cols=292 Identities=10% Similarity=-0.015 Sum_probs=152.5
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
..|+++.|.+.+....+. .|+ ....+.....++...|+.+.|...+....+....+...........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 456666666666555443 122 1223333445555556666666666665543211111222223555555666666
Q ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH---HhcCCHHHHHHHHHH
Q 042941 157 AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY---SKARNLHKVLRLFDQ 233 (481)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~ 233 (481)
|...++.+....|.+......+...+. ..|++++|.+.+..+.+.+..++......-..++ ...+..++..+.+..
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~-~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYI-RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666555544555555555556665 5666666666666666554332211111111111 111122222223333
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH-HHHHHH--HHhcCCHHHHHHHHHHHHHC
Q 042941 234 MKRMG---IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY-NSLIKP--LCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 234 ~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~--~~~~g~~~~a~~~~~~m~~~ 307 (481)
+.+.. .+.+...+..+...+...|+.+.|.+++++..+..+ |.... ..++.. ....++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 32221 012445555555555566666666666655555422 22110 001111 11223333333333333322
Q ss_pred CCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 308 GISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTN--DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTA 385 (481)
Q Consensus 308 ~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (481)
.+-++ ....++...+.+.|++++|.+.|+........|+...+..
T Consensus 329 ---------------------------------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 329 ---------------------------------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred ---------------------------------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 12233 5677889999999999999999995444445688888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042941 386 LIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+...+.+.|+.++|.+++++...
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999998643
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=2.6e-11 Score=122.82 Aligned_cols=431 Identities=9% Similarity=0.004 Sum_probs=220.5
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh
Q 042941 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF 81 (481)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (481)
+++.+.+.+... ... .++ .+.|.......-.... .+..-++.+.+..+.++.+ -+.....-+.....+.|+.
T Consensus 319 ~~~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 319 TLPVLLKEGQYD-AAQ-KLL--ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP--ANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHhccHHH-HHH-HHh--cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcccH
Confidence 356666666422 111 222 3444444332222222 1233344444444544421 3667777777778899999
Q ss_pred hHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHH
Q 042941 82 DTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL 160 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 160 (481)
++|.++|+..... .++ ..+......++..|.+.+......++..-.. +++...-..+.. +.-....+...
T Consensus 393 ~~a~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~---~~~~~~~~~~~ 463 (987)
T PRK09782 393 REAADLLLQRYPF--QGDARLSQTLMARLASLLESHPYLATPAKVAILSK----PLPLAEQRQWQS---QLPGIADNCPA 463 (987)
T ss_pred HHHHHHHHHhcCC--CcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc----ccccchhHHHHh---hhhhhhhhHHH
Confidence 9999999998773 111 1124555577888888776333322221111 111111111111 11111112222
Q ss_pred HhhccCCCCC--chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 161 MFCNKDVFPF--NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 161 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
+.......|+ +...|..+..++. . ++.++|...+.+.... .|+......+...+...|++++|...|+.+...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~-~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYR-D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHH-h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 2222222233 4445555555554 3 5555565555544443 233322222333334556666666666554433
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
+|+...+..+...+.+.|++++|...+++..+.++. +...+..+.......|++++|...+++..+.. |+...+..
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~ 614 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVA 614 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 233333444455555566666666666655554311 22222222223333466666666666555443 34444444
Q ss_pred HHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 319 FLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 319 li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+...+.+.++ +...++...+.. +.+...+..+...+...|++++|+..+++..+... -+...+..+..++...|+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 4444433332 233333333332 44566788888899999999999999999988643 367788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhhhhHHHHHHHHHhhcCccCCC--Cccccccccccchhh
Q 042941 396 LEEAHQYYMEMKEKQLLPEPKTDEL-LQDWSYNKQFVERQIASLKAHQPQSGQ--NTRVISKKSDQDREF 462 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 462 (481)
+++|+..|++..+ ..|+..-... .-.........+++.+.+.....-++. +....+.++..++++
T Consensus 693 ~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 693 MAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhccccchHhhhcccc
Confidence 9999999999986 4566533332 222333444444444444443333332 333444444444443
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.4e-11 Score=117.64 Aligned_cols=408 Identities=10% Similarity=0.020 Sum_probs=291.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG--ETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
.+.|.+-|....++.+ +|.-.+---.......|++..|+.+|...... ...|| ....+..++.+.|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-----~rIgig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-----VRIGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-----ccchhhhHHHhccchhhH
Confidence 5789999998876663 56544333334445778999999999996553 33444 222334567788999999
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHH---cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALC---RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
+..|.+..+.+. -++.++..|...-. ....+..+..++...-...+.++...+.|...|. -.|++..+..+...+
T Consensus 219 ~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 219 LLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHH
Confidence 999999998653 24444443333222 2344666777777665556678899999999999 899999999999988
Q ss_pred HhcCCc--ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 200 SQRGIC--YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR--KVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 200 ~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
...... .-...|-.+.++|...|++++|...|.+..+.. ++. ..+--+...|.+.|+++.+...|+...+..+.
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 876322 123468889999999999999999999888764 343 44456889999999999999999999887443
Q ss_pred CChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH------HHHHHHHHHcCCCCCH
Q 042941 276 PNVVTYNSLIKPLCKAR----KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV------FGLLESMRKMGCQPTN 345 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~------~~~~~~~~~~~~~~~~ 345 (481)
+..+...+-..|+..+ ..+.|..++....+.- ..|...|..+-..+-..+.. ..+.+.+...+..+.+
T Consensus 375 -~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 -NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred -hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 6667777777777664 4567777777666553 23566666666665443222 4455556666667888
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISEN---GNGPDR------SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
...|.+...+...|++++|...|...... ...++. .+--.+...+-..++.+.|.+.|+..... .|+..
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 99999999999999999999999988664 122333 12223455566778999999999998875 46654
Q ss_pred HH-HHHHHHH---hhhhHHHHHHHHHhhcCccCCCCccccccccccchhhccCcc
Q 042941 417 TD-ELLQDWS---YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPE 467 (481)
Q Consensus 417 ~~-~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 467 (481)
.. .-+.... .+..++...++.+.+.+.++|.++..+|+.|....+|.-+.+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 43 2222222 344566677888888999999999999999988888887766
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=8.2e-12 Score=104.65 Aligned_cols=235 Identities=13% Similarity=0.002 Sum_probs=172.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHhHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---IEDFQGL 144 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 144 (481)
|-.=+..+. ..+.++|.++|-+|.+. |+.|..+..+|.+.|.+.|..+.|+.+...+.++.--+. ......|
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 333333333 45678888888888886 666677788888888888889999888888875321111 1234456
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH----HhHHHHHHHHHh
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV----VSFSCIISCYSK 220 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~ 220 (481)
..-|...|-++.|+.+|..+.+....-......++..|- ...+|++|+++-+++...+..+.. .-|..+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 677888888888888888876644445566777888888 888899999888888877554332 234555556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
..+.+.|..++....+.+ +.++..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778888888888888765 4455555667788888999999999999988886666667778888899999999999888
Q ss_pred HHHHHHCCC
Q 042941 301 FDEMLQRGI 309 (481)
Q Consensus 301 ~~~m~~~~~ 309 (481)
+..+.+...
T Consensus 272 L~~~~~~~~ 280 (389)
T COG2956 272 LRRAMETNT 280 (389)
T ss_pred HHHHHHccC
Confidence 888877643
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4.9e-11 Score=114.04 Aligned_cols=380 Identities=12% Similarity=0.045 Sum_probs=184.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLS 146 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 146 (481)
.|-.+.++|-..|++++|...|.+..+. .|+. ..-.+.-+...+.+.|+.+.+...|+...+.. +-+..+...|..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 3444444444555555555555444433 1111 02222334444455555555555555444322 122334444444
Q ss_pred HHHcCC----ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCcccHHhHHHHHHHH
Q 042941 147 ALCRYK----NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM----SQRGICYDVVSFSCIISCY 218 (481)
Q Consensus 147 ~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~ 218 (481)
.|...+ ..+.|..++.......+.|...|-.+...+- .++...++.+|... ...+-.+.+...|.+...+
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e--~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE--QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 444332 2333333443333333445555555554443 33333335544432 2334445666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc---CCCCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRM---GIECDRK------VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
...|+++.|...|...... ...+|.. +--.+..++-..++.+.|.+.|..+.+..+. =+..|-.+.....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHH
Confidence 7777777777777666543 1122221 1122334444555666666666666554221 1112222221222
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCC----------------------------------CHHHHHHHHHHHhch--------
Q 042941 290 KARKLDEARQAFDEMLQRG-ISP----------------------------------TIRTYHAFLDIIRTG-------- 326 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~-~~p----------------------------------~~~~~~~li~~~~~~-------- 326 (481)
..+...+|...++.....+ ..| |.++..+|=+.|...
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 2344555555555443221 112 222222222211110
Q ss_pred -------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042941 327 -------EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEA 399 (481)
Q Consensus 327 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (481)
..+.+++....+.. +.|...-|.+.-.++..|+++.|..+|.+..+... -...+|-.+..+|..+|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 11233333333332 34445555666667778888888888888877533 2445677788888888888888
Q ss_pred HHHHHHHHHC-CCCCCHhHHHHHHHHHhhhhHHHHHHH---HHhhcCccCCCCccccccc
Q 042941 400 HQYYMEMKEK-QLLPEPKTDELLQDWSYNKQFVERQIA---SLKAHQPQSGQNTRVISKK 455 (481)
Q Consensus 400 ~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ 455 (481)
+++|+..... .-.-++...+.|.+.+...+...++.+ ......|.++.....++-+
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 8888875554 434455666677776665555554444 4444555555544444433
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.3e-11 Score=103.48 Aligned_cols=286 Identities=13% Similarity=0.069 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHH
Q 042941 28 KVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLL 107 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 107 (481)
.++..-+..+=..+.+.++.|...|..+.+.. +.+..+.-++.+.|.+.|..+.|+++-+.+.++.--+..--..+..
T Consensus 34 ~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 34 RLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred hccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35555555555555788888888888886533 2466777788888888899999999988888762211111123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-CCC----chHhHHHHHHHH
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPF----NTKSFNIILNGW 182 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~~l~~~~ 182 (481)
.|.+-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...++++|+.+-+++... ..+ -...|.-+...+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 67778888888999999988888754 335566778888888888888888887764321 111 123466677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ...+.+.|..++.+..+.+.+ ....--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++.
T Consensus 191 ~-~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 191 L-ASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred h-hhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7 778888888888888776333 22233345677888889999999988888876555566777888889999999888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHH
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD-EMLQRGISPTIRTYHAFLDII 323 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~ 323 (481)
...+..+.+... ....-..+...-......+.|..++. ++.++ |+...+..+|+.-
T Consensus 269 ~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~---Pt~~gf~rl~~~~ 325 (389)
T COG2956 269 LNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRRK---PTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhhC---CcHHHHHHHHHhh
Confidence 888888877633 33333444444444444555555544 44443 8888888888864
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=9.2e-15 Score=129.79 Aligned_cols=227 Identities=14% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR 150 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 150 (481)
+...+.+.|++++|+++++........|+ +...|..+...+...++++.|...|+.+...+.. ++..+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~--~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPD--DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 34444455555555555543332211111 1233333333344444555555555554443311 33333334333 34
Q ss_pred CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CcccHHhHHHHHHHHHhcCCHHHHHH
Q 042941 151 YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRG-ICYDVVSFSCIISCYSKARNLHKVLR 229 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~ 229 (481)
.+++++|.+++...-.. .++...+..++..+. ..++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER-DGDPRYLLSALQLYY-RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HH-HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc-ccccchhhHHHHHHH-HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444332111 123333334444444 4444444444444433221 12233334444444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 230 LFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
.+++..+.. +.|......++..+...|+.+++..+++...+.. +.|...+..+..+|...|++++|+.+|++..
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 444444432 2223334444444444444444444444443332 1233333444444444444444444444433
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=5.7e-15 Score=131.11 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=113.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++++.|++++........-+.+...|..+.......++++.|.+.++.+... +..++..+..++.. ...+++++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~----~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS----DKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccc-cccccccc
Confidence 58889999999654333211245566666677777899999999999999887 33346677777777 78899999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
|..++...-+.. +++..+..++..+.+.++++++..+++.+.. ..+.+...|..+...+. +.|+.++|+..+++.
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKA 172 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 999998766543 5667788889999999999999999988543 24567888888889888 999999999999999
Q ss_pred HhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
.+..+. |....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+.... |..
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~ 249 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPL 249 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HH
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-ccc
Confidence 987433 56778889999999999999999999888764 556777889999999999999999999999886443 788
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
....+..++...|+.++|..+.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 888899999999999999999887654
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=1.1e-10 Score=110.93 Aligned_cols=357 Identities=11% Similarity=0.064 Sum_probs=230.1
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV 154 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 154 (481)
+.-.|++++|.+++.++.+. ++.....|.+|...|-..|+.+++...+-.+.-.+ +-|...|..+.....+.|.+
T Consensus 149 lfarg~~eeA~~i~~EvIkq----dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ----DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33449999999999998887 66668889999999999999999888776655443 34667888888888899999
Q ss_pred hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH----HHHHHHHHhcCCHHHHHHH
Q 042941 155 QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF----SCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~ll~~~~~~~~~~~a~~~ 230 (481)
++|.-+|.+..+..|++...+---+..|- +.|+...|..-|.++.....+.|..-+ ..+++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998876666777766666677777 889999999999888877443333222 3345566677777888888
Q ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---------------------------ChhhHH
Q 042941 231 FDQMKR-MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP---------------------------NVVTYN 282 (481)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~ 282 (481)
++.... .+-..+...++.++..|.+...++.|......+......+ +... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 877665 2234566677888888888888888888887776621111 2222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhchhHHHH---HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQRGISP--TIRTYHAFLDIIRTGEEVFG---LLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
.++-++...+..+....+...+.+.+..| ++..|.-+..++.+.+.... ++..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22333444445555555555555555332 34456666666666655533 33333333333345667777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHhHHHHHHHHHhhhh
Q 042941 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE--------KQLLPEPKTDELLQDWSYNKQ 429 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~~ 429 (481)
.|.++.|.+.++....... .+...-.+|-..+.+.|+.++|.+.+..+.. .+..|+..........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 7777777777777776421 2333444566667777777777777777532 122333333333334445555
Q ss_pred HHHHHHHHHh
Q 042941 430 FVERQIASLK 439 (481)
Q Consensus 430 ~~~~~~~~~~ 439 (481)
..++.+....
T Consensus 541 k~E~fi~t~~ 550 (895)
T KOG2076|consen 541 KREEFINTAS 550 (895)
T ss_pred hHHHHHHHHH
Confidence 5555444333
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=5.1e-11 Score=103.05 Aligned_cols=287 Identities=12% Similarity=0.055 Sum_probs=160.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-CCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 116 VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
.|++..|+....+..+.+-. ....|.....+....|+.+.+-+++.+..+. ..++....-....... ..|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-NRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-hCCCchhHHH
Confidence 35555555555554443311 2223334444555555555555555544332 1223333333444444 4555555555
Q ss_pred HHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHH
Q 042941 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR-------KVYNAVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 267 (481)
-++.+...+.. ++.......++|.+.|++..+..++..+.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555554333 3344555555555555555555555555555533222 344555555555555555444555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH---HHHHHH-HHHcCCCC
Q 042941 268 SMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV---FGLLES-MRKMGCQP 343 (481)
Q Consensus 268 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~---~~~~~~-~~~~~~~~ 343 (481)
..... .+-+...-.+++.-+.+.|+.++|.++.++..+++..|. ...++. +.+.++. .+..+. ....+.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~-- 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPE-- 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCC--
Confidence 44332 222444445555566666666666666666666554444 111111 1122222 222222 222333
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 344 TNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414 (481)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 414 (481)
++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+++++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3468888999999999999999999987774 58999999999999999999999999998765433343
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.2e-11 Score=114.89 Aligned_cols=283 Identities=10% Similarity=0.032 Sum_probs=192.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHH-HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 042941 31 SELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTM-IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109 (481)
Q Consensus 31 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l 109 (481)
..+...++....++++.|.+.+....... +++..+..+ ..+..+.|+++.|...+.++.+. .|+.. .......
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~-~~~~l~~ 159 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQ-LPVEITR 159 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcch-HHHHHHH
Confidence 34556666666688888887777653322 233333333 44447888999999999888765 33310 1122233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH--------hHHHHHHH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK--------SFNIILNG 181 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~l~~~ 181 (481)
...+...|+++.|...++.+.+.. +-++..+..+...|.+.|++++|..++..+......+.. .|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999888765 335677888888899999999999888876543222222 33344444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
.. ...+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.++
T Consensus 239 ~~-~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~ 312 (398)
T PRK10747 239 AM-ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQ 312 (398)
T ss_pred HH-HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHH
Confidence 44 455666677777766543 2346667778888888899999999988888774 4555222 3344445688888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV 329 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 329 (481)
+.+..+...+..+. |...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+...++.
T Consensus 313 al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 313 LEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 88888888877543 6666778888888889999999999888875 47777777777766655444
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.6e-10 Score=101.47 Aligned_cols=147 Identities=10% Similarity=0.065 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhc
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM--GCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 358 (481)
.-.+...|-...+..+|++++.+.... ++.|......|-..|-+.|+--+.|+..-+. -++-+..+..-|...|...
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 333344444444444444444333221 2334555566666666666554444443332 2345666777777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHH
Q 042941 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALF-LNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFV 431 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 431 (481)
.-+++++..|++..- +.|+..-|..++..|. +.|++.+|+++|+....+ ++-|..+...|++.++..|+.
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 778888888887654 5699999998887654 689999999999998764 677888888888877655443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=1.2e-10 Score=109.00 Aligned_cols=301 Identities=9% Similarity=-0.046 Sum_probs=211.5
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
...+...++....++++.|.+.+....+.. |+ ...+-....+..+.|+++.|.+.+.+..+. .|+.. ......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~-l~~~~~ 158 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDN-ILVEIA 158 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCc-hHHHHH
Confidence 345667777777899999999998775433 44 344445567788899999999999998765 23411 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH-HHHHH---HH
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI-ILNGW---CN 184 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~---~~ 184 (481)
....+...|+++.|...++.+.+.. +-++..+..+..++...|+++.|.+.+..+......+...+.. -..++ .
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l- 236 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL- 236 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-
Confidence 5778888999999999999999876 3366788899999999999999999998866543333333321 11111 2
Q ss_pred hcCCHHHHHHHHHHHHhcCCc---ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCC
Q 042941 185 IIGSSREAERVWMEMSQRGIC---YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV---YNAVIHALAKGRL 258 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 258 (481)
..+..+...+.+..+...... .+...+..+...+...|+.++|.+++++..+.. ||... ...........++
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCC
Confidence 223333333455544443221 367788888899999999999999999999863 34331 1222222344578
Q ss_pred hHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHH
Q 042941 259 VKDAISLMKSMEEKGVAPNV--VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 336 (481)
.+.+.+.++...+..+. |. ....++...+.+.|++++|.+.|+......
T Consensus 315 ~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---------------------------- 365 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---------------------------- 365 (409)
T ss_pred hHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh----------------------------
Confidence 88999999888776332 34 456688889999999999999999533221
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
..|+...+..+...+.+.|+.++|.+++++...
T Consensus 366 ----~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 366 ----EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 156666777888889999999999999987644
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=1.1e-09 Score=100.53 Aligned_cols=444 Identities=11% Similarity=0.036 Sum_probs=244.5
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH---
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDE--- 90 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--- 90 (481)
+|+.++..-.++ -|++-.+-..+..+ ..++.|..++....+. ++.+...|.+....=-..|+.+...++.++
T Consensus 394 darilL~rAvec--cp~s~dLwlAlarL-etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 394 DARILLERAVEC--CPQSMDLWLALARL-ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred HHHHHHHHHHHh--ccchHHHHHHHHHH-HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444444432 34444444444444 5566777777776433 335666776666666677777777776654
Q ss_pred -HhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHcCCChhhHHHHHhhccCC
Q 042941 91 -MRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV--GIEDFQGLLSALCRYKNVQDAEHLMFCNKDV 167 (481)
Q Consensus 91 -~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 167 (481)
+...|+..+ ...|..=...|-..|.+-.+..+.......|+.- --.||..-...|.+.+.++-|..+|......
T Consensus 469 ~L~~ngv~i~---rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 469 ELQANGVEIN---RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHhhcceeec---HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 344566666 6667666666666777777777777666665542 2346666666677777777777777665555
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN 247 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (481)
+|.+...|......-- ..|..++-..+|++....-.+ ....|-.....+-..|+...|..++....+.. +.+...|-
T Consensus 546 fp~k~slWlra~~~ek-~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwl 622 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEK-SHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWL 622 (913)
T ss_pred ccchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHH
Confidence 6666666666555544 566666666666666655222 33344444555566677777777776666653 33555666
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhch
Q 042941 248 AVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTG 326 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~ 326 (481)
+.++.-..+..++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+. -|+..-+-.++ +.+.+.
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 6666666677777777777666553 345555554444444456666676666665554 24443332222 223333
Q ss_pred hHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042941 327 EEVFGLLESMRKM--GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYM 404 (481)
Q Consensus 327 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (481)
++....-+..... .++-....|..+...=-+.|.+-.|+.++++.+-.+.. +...|-..|..=.+.|+.+.|..+..
T Consensus 699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 3332221111111 12223344555555555555566666666555544332 45555555555566666555555444
Q ss_pred HHHHC----C-------------------------CCCCHhHHHHHHHHHh---hhhHHHHHHHHHhhcCccCCCCcccc
Q 042941 405 EMKEK----Q-------------------------LLPEPKTDELLQDWSY---NKQFVERQIASLKAHQPQSGQNTRVI 452 (481)
Q Consensus 405 ~m~~~----~-------------------------~~p~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l 452 (481)
+..+. | +.-|+...-.+...+- +...+.+-+.......|++++.+..+
T Consensus 778 kALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 33221 0 1122222222222222 22333355556666777777777777
Q ss_pred ccccccchhhccCccccchhc
Q 042941 453 SKKSDQDREFLQQPETRRVVR 473 (481)
Q Consensus 453 ~~~~~~~~~~~~a~~~r~~~~ 473 (481)
...+.+.|.-++..++...-.
T Consensus 858 ykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 777777776666555555443
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=3.5e-10 Score=107.53 Aligned_cols=325 Identities=14% Similarity=0.128 Sum_probs=237.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
.....|+.++|..++.+..+.. +.....|-.|...|-..|+.+++...+-......|.|...|..+..... +.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHH
Confidence 3344599999999999999875 4467789999999999999999999887776667778899999999888 9999999
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCChHHHHHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRK----VYNAVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~ 267 (481)
|.-.|.+..+..+. +...+---+..|-+.|+...|...|.++.+...+.|.. ..-.+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988443 55555556678899999999999999999874322222 22345667777888899999998
Q ss_pred HHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------------------------HHHHHH
Q 042941 268 SMEEK-GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTI---------------------------RTYHAF 319 (481)
Q Consensus 268 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---------------------------~~~~~l 319 (481)
..... +-..+...++.++..|.+...++.|......+......+|. ..+..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 87662 22346677889999999999999999988887763222222 221111
Q ss_pred HHHHh--chhHH-HHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042941 320 LDIIR--TGEEV-FGLLESMRKMGC--QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 320 i~~~~--~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (481)
+ ++. +..+. ..+...+.+..+ .-+...|.-+..+|.+.|++.+|+.+|..+.......+...|-.+..+|...|
T Consensus 385 i-cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 I-CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred h-hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 1 111 11222 334444444443 33456788888888999999999999988888655556778888888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhhhhHHHHHHHHHhhcC
Q 042941 395 KLEEAHQYYMEMKEKQLLPEPKTD-ELLQDWSYNKQFVERQIASLKAHQ 442 (481)
Q Consensus 395 ~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~ 442 (481)
.+++|.+.|+.... ..|+..-. -.|...+...|..+++++.+.+..
T Consensus 464 e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999998888876 34544333 344455666777777777777643
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.2e-08 Score=93.92 Aligned_cols=413 Identities=11% Similarity=-0.021 Sum_probs=300.8
Q ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 29 VSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
|++.-+-...-.+ ..++.|.-++..+.+-. +.+.. |..+|++...++.|..++....+. ++.+ +..|.+
T Consensus 377 P~sv~LWKaAVel-E~~~darilL~rAvecc--p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd---~~IWit 445 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL-EEPEDARILLERAVECC--PQSMD----LWLALARLETYENAKKVLNKAREI-IPTD---REIWIT 445 (913)
T ss_pred CchHHHHHHHHhc-cChHHHHHHHHHHHHhc--cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCC---hhHHHH
Confidence 3444444433334 44455877787775433 23344 445666777789999999998875 4445 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----hhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC-C--CCCchHhHHHHHHH
Q 042941 109 LIRRYCAVHDVGRAINAFYAY----KRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD-V--FPFNTKSFNIILNG 181 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~l~~~ 181 (481)
....--.+|+.+.+..++.+- ...|+..+...|..=...|-..|.+--+..+...... + ...-..+|+.-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 888888899999999888765 4678889999998888888888988888888766322 1 12234678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+. +.+.++-|..+|....+.-. -+...|......--..|..++...+|++.... ++-....|-...+.+-..|+...
T Consensus 526 ~~-k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 526 CE-KRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HH-hcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHH
Confidence 88 89999999999998887632 35667777776667789999999999999887 35566777778888889999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhchhHHHHHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA---FLDIIRTGEEVFGLLESMRK 338 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---li~~~~~~~~~~~~~~~~~~ 338 (481)
|..++....+.... +...|-.-+..-..+..++.|..+|.+....+ |+...|.- +.......+++.+++++..+
T Consensus 603 ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 603 ARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999988665 77888889999999999999999999988754 55555443 33445566777777777666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 042941 339 MGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTD 418 (481)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 418 (481)
. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++..+..|-.|...=-+.|.+-.|..++++..-++ +-+...|
T Consensus 680 ~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw 756 (913)
T KOG0495|consen 680 S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW 756 (913)
T ss_pred h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence 4 2333457888889999999999999998776553 33345577777777788999999999999988764 2334445
Q ss_pred HHHHHH---HhhhhHHHHHHHHHhhcCccCCCCccccccccccchh
Q 042941 419 ELLQDW---SYNKQFVERQIASLKAHQPQSGQNTRVISKKSDQDRE 461 (481)
Q Consensus 419 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 461 (481)
-..+.. .++..+++..+....+.-|.+.-.+..-.++...-++
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 444443 3555666666666666666665555444444433333
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.2e-11 Score=113.69 Aligned_cols=284 Identities=11% Similarity=0.040 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC---CCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV---FPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
+..+|+..|..+... +.-+..+...+.++|...+++++|+++|+.++.. ...+..+|.+.+.-+- + +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq-~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ-D----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH-h----hHHHH
Confidence 345666666653332 2222344445556666666666666666554332 1234455555554332 1 11111
Q ss_pred HH-HHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 195 VW-MEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 195 ~~-~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
.+ +.+.+.. +-.+.+|.++.++|+-+++.+.|++.|+...+.+ +....+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 1222211 1134566666666666666666666666666543 2255666666666666666666666666655431
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHH
Q 042941 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY---HAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIM 350 (481)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (481)
.. +-..|--+...|.+.++++.|+-.|+...+-+.. +.+.. ..+...+.+.+.+..+++...... +.|+..--.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 11 2222333444566666666666666665554321 11111 111112222233333333333222 112222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
.+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-+.+...++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 334455567777777777777764 22244466667777777777777777777666544333
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.9e-11 Score=112.26 Aligned_cols=266 Identities=11% Similarity=0.037 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a 122 (481)
...+|+..|..+.... .-+..+..-+..+|...+++++|+++|+.+.+. .|- .....+|.+.+--+ .+.-+.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHL---q~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHL---QDEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHH---HhhHHH
Confidence 3466777777743222 123366666777777788888888888777664 111 11245555554322 111111
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
-.+-+.+.+.. +-.+.+|..+.++|.-.++.+.|++.|++.....+....+|+.+..-+. ...++|.|...|+.....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcC
Confidence 12222333322 3356677777777777777777777777655544446666777766666 677777777777666543
Q ss_pred CCcccHHhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 203 GICYDVVSFS---CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 203 g~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
|...|+ -+.-.|.+.++++.|+-.|+...+.+ +.+......+...+.+.|+.|+|++++++......+ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 333333 34556777777777777777776654 345555566666677777777777777777666544 443
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhch
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTG 326 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~ 326 (481)
.--.....+...+++++|+..++++++. .|+..+...++ ..|.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRL 604 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHH
Confidence 3334455556667777777777777664 35544433333 334443
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=2.8e-10 Score=110.64 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 81 FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA---------VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
+++|..+|++..+. ++.....|..+..++.. .+++++|...+++..+.+ +-+...+..+..++...
T Consensus 277 ~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 45666666666654 33334455444443321 223566666666666543 22445555555556666
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
|++++|...|++.....|.+...+..+...+. ..|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 66666666666654444445555555555566 666666666666666555332 1112222333344456666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+++.....+-+...+..+..++...|++++|...+.++..... .+....+.+...|+..| +.|...++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 6655432122333445555555666666666666665544311 12223333444444444 35555555443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.1e-09 Score=90.93 Aligned_cols=357 Identities=11% Similarity=0.041 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
.-|...+-.....+.+.|....|.+.|...... -|....+|..|...... .+.+. .... +.+.+...+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~---~e~~~----~l~~-~l~~~~h~M 228 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITD---IEILS----ILVV-GLPSDMHWM 228 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhch---HHHHH----HHHh-cCcccchHH
Confidence 345555555566677889999999999888765 33336666666544322 22222 2221 122222211
Q ss_pred H--HHHHHHHcCCChhhHHHHHhhccC-CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--ccHHhHHHHHH
Q 042941 142 Q--GLLSALCRYKNVQDAEHLMFCNKD-VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC--YDVVSFSCIIS 216 (481)
Q Consensus 142 ~--~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~ 216 (481)
. .+..++....+.+++.+-.+.+.+ +++.+...-+....+.. ...++++|+.+|+++.+..+- -|..+|+.++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y-~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY-NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1 244666677777887777766544 35444444444444444 789999999999999887321 25677777664
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (481)
+ +..+-.- --+-+...+.+ +--+.|..++.+-|+-.++.++|...|++..+.+++ ....|+.+-+-|....+...
T Consensus 308 v--~~~~skL-s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 V--KNDKSKL-SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H--HhhhHHH-HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 3 3322211 11112222221 334577888888899999999999999999988665 67788888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHH-cCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042941 297 ARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRK-MGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374 (481)
Q Consensus 297 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (481)
|.+-++..++-+. -|...|-.+=++|.-.+...-.+-..++ ..+ +.|...|.+|..+|.+.++.++|+..|.+....
T Consensus 383 Ai~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 383 AIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999888653 3667777777777766555322222222 233 446789999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhHHH--HHHHHHhhhhHHHHHHHHH
Q 042941 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK----QLLPEPKTDE--LLQDWSYNKQFVERQIASL 438 (481)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~--~l~~~~~~~~~~~~~~~~~ 438 (481)
|-. +...+..|...|-+.++.++|..+|.+-.+. |...+..... .|...+.+.+..+++-...
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 543 5678999999999999999999998886652 4333322222 2334455555555554433
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=2.8e-09 Score=92.54 Aligned_cols=252 Identities=13% Similarity=0.101 Sum_probs=176.5
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.+.+-+.+..+.+..| .++...+-+........|+...|..-++.+.+.+ +..+.......++|.+.|++..+
T Consensus 132 gd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 132 GDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAARENVDQLLEMT----PRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred ccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC----cCChHHHHHHHHHHHHhccHHHH
Confidence 556667777777754433 3566677777777777788877777777777662 22367777777888888888888
Q ss_pred HHHHHHHhhcCCCCCH-------HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHH
Q 042941 123 INAFYAYKRFKFAVGI-------EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERV 195 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 195 (481)
..++..+.+.+.--+. .+|+.+++-....+..+.-...++........++..-..++.-+. ++|+.++|.++
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li-~l~~~~~A~~~ 285 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI-RLGDHDEAQEI 285 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH-HcCChHHHHHH
Confidence 8888888777755443 346666666666666666666666666666666667777777777 78888888888
Q ss_pred HHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
..+..+.+..|+..+ .-.+.+.++...-++..+.-.+.. +-++..+.+|...|.+.+.+.+|...|+...+. .
T Consensus 286 i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~ 358 (400)
T COG3071 286 IEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--R 358 (400)
T ss_pred HHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C
Confidence 888777766655221 223556677777777666655542 345577778888888888888888888866664 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 276 PNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
|+..+|+.+..++.+.|+...|.+++++....
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888888888888775543
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.6e-10 Score=96.93 Aligned_cols=263 Identities=13% Similarity=0.071 Sum_probs=146.1
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 042941 33 LVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRR 112 (481)
Q Consensus 33 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~ 112 (481)
.+..+.+.+. ..+++++-.+.. .+.|++-+...-+-...+.-...++++|+.+|+++.+. -+-...+..+|+.++-.
T Consensus 232 F~~~a~~el~-q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELH-QHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHH
Confidence 3444444443 445555555544 34555445444444444555667777777777777665 11122234555555432
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
++.+-.-+.-. ...... -+--+.|+..+.+-|.-.++-++|...|++.....|.....|+.+..-|. ...+...|
T Consensus 309 --~~~~skLs~LA-~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDKSKLSYLA-QNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAA 383 (559)
T ss_pred --HhhhHHHHHHH-HHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHH
Confidence 22111111100 111111 12334455556666666666666666666654444555566666666666 66666666
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+-|+...+.+.. |-..|-.+..+|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666666655333 55566666666666666666666666666553 445666666666666666666666666666655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 273 GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
|-. +...+..+...|-+.++..+|-..|.+..+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 433 445566666666666666666666665443
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=8.5e-10 Score=96.97 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=127.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLES 335 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 335 (481)
+|++++|...|++.....-.-....|| +--.+-..|++++|++.|-.+..- +.-+......+.+.|...++..+.++.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 466777777777766542221112222 222345567777777777665321 112444444455555554444444444
Q ss_pred HHHc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 336 MRKM-G-CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 336 ~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
+.+. . ++.|+.+..-|...|-+.|+-.+|.+.+-.--+. ++.+..+..-|..-|....-+++|+.+|++..- +.|
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 4333 2 4556778888999999999999998876554433 456778888888888888889999999998753 789
Q ss_pred CHhHHHHHHH-HHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 414 EPKTDELLQD-WSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 414 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
+..-|.+++. ++.+.|...++++..++.+...|+.+.+|-.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 9999987776 4567788888888888777776666665543
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=4.9e-10 Score=108.96 Aligned_cols=251 Identities=10% Similarity=-0.056 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh---------ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILG---------KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYC 114 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~ 114 (481)
+.+.|..+|+......+ .+...|..+..++. ..+++++|...+++..+. ++.+..++..+...+.
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence 35789999999875442 24556666655443 234588999999999887 5556888999989999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
..|++++|...|++..+.+ +.++..+..+..++...|++++|...+++.....|.+...+..++..+. ..|++++|..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~-~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY-YHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-hccCHHHHHH
Confidence 9999999999999999875 3356778888999999999999999999976654544444445555566 7899999999
Q ss_pred HHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-
Q 042941 195 VWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG- 273 (481)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 273 (481)
.+++......+-+...+..+..++...|++++|...+..+.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 99998765322245556777888899999999999999876652 223444555666777777 47888777766531
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
-.+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33445556777777666 7776653
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=6.6e-10 Score=96.16 Aligned_cols=198 Identities=12% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~- 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC- 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-
Confidence 33344444444444444444444444322 1123334444444444444444444444433323333344444445555
Q ss_pred hcCCHHHHHHHHHHHHhcCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|++++|.+.++........ .....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555443211 122344445555666666666666666655542 223445555666666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..+++..+. .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666554 222344444555555566666666666555443
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=6.8e-10 Score=105.30 Aligned_cols=255 Identities=12% Similarity=0.036 Sum_probs=132.8
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCH--HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWVRNDW--EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
....++..++..|..|+..+|.+++..++..+ +.|- +|..| +..+.+.+...++.++....+.++.+.+.
T Consensus 8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC------
Confidence 34567788888888888888888888887444 3444 77777 44555567778888888888888777665
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----hcCCC-CCHHh-------------HHHHHHHHHc
Q 042941 92 RGGETGPSLVTKQTLLILIRRYCAVHDVGR---AINAFYAYK----RFKFA-VGIED-------------FQGLLSALCR 150 (481)
Q Consensus 92 ~~~~~~p~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~~~~-~~~~~-------------~~~ll~~~~~ 150 (481)
.|. +.+|..|..+|...||+.. +.+.+.... ..|+. |.... -..++....-
T Consensus 80 -----ep~---aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 -----EPL---ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred -----CCc---hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 345 7788888888888888654 222111111 11110 00000 0112222233
Q ss_pred CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 151 YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
.|-++.+++++..++..-...+... +++-.. . .+...+++........-.|++.+|.+++++-..+|+.+.|..+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv-~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNV-V--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH--HHHHhc-c--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 3334444444433222111111111 122222 1 1111222222221111135555666666655566666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 231 FDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
+.+|.+.|++.+.+-|-.++-+ .++...+..++.-|...|+.|+..|+.--+-.+..+|
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 6666666655555555555443 4555555555555666666666666555444444433
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1e-07 Score=84.64 Aligned_cols=392 Identities=12% Similarity=0.045 Sum_probs=243.0
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHH
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINA 125 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~ 125 (481)
..|..+|+.+..-. ..+...|-..+..=.+...+..|..+++..... -|- -...|-.-+..=-..|++..|.++
T Consensus 90 ~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPR--VdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 90 QRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPR--VDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cch--HHHHHHHHHHHHHHhcccHHHHHH
Confidence 45777777775322 356677778888888888889999999887764 222 123444444444556899999999
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC
Q 042941 126 FYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GI 204 (481)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~ 204 (481)
|++..+ ..|+..+|++.++.=.+.+.++.|..++++..- +.|+..+|-.....=. ++|....|.++|+...+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~-k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEE-KHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhhh
Confidence 988776 579999999999999999999999999988543 3488888888887777 888888888888876653 11
Q ss_pred c-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------C-----------------------CC
Q 042941 205 C-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRM--------------------G-----------------------IE 240 (481)
Q Consensus 205 ~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------~-----------------------~~ 240 (481)
. .+...+.+....-.++..++.|.-+|+-.... | -+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 1 12223344333333444455555555444332 0 12
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 042941 241 CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV-------VTYNSLIKPL---CKARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~ 310 (481)
-|-.+|-..++.-...|+.+...++|++.... ++|-. ..|-.+=.++ ....+.+.+.++|+...+ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 34445555666666667777777777777654 33311 1122111122 235677777777777666 233
Q ss_pred CCHHHHHHHHHHHhchh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042941 311 PTIRTYHAFLDIIRTGE-------EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSY 383 (481)
Q Consensus 311 p~~~~~~~li~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 383 (481)
....||..+--.|++.. .+.+++.. ..|..|...+|...|..-.+.+++|.+..++++..+.++. |..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~--AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGN--AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHH--HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHH
Confidence 34556655554444331 22233222 2366788888888888888888888888888888886543 66677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccc
Q 042941 384 TALIHALFLNGKLEEAHQYYMEMKEKQ-LLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVIS 453 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 453 (481)
......=...|+.+.|..+|.-.++.. +......+-..++--...|..+ ...+.+.+..+..+ .+.+.+
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 777777777888888888888877652 2222233334444333333333 34445555544443 344333
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=6.9e-10 Score=96.03 Aligned_cols=202 Identities=10% Similarity=-0.000 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.....+..+...+...|++++|.+.+++..+. ++.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 103 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLN 103 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 34677888899999999999999999998876 33347788889999999999999999999998765 34566778
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCC--CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDV--FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
.+...+...|++++|...+.+.... .+.....+..+...+. ..|++++|...+++....... +...+..+...+..
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 181 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 8889999999999999999885432 2334456677777888 899999999999998876433 45678888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.|++++|...+++..+. .+.+...+..+...+...|+.+.|..+.+.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999998887 3556777778888899999999999998887653
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.8e-09 Score=94.67 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
+.+++|+.++.|.+... |+ +..|......|...|+|++..+.....++. .|+ -..++..-.+++-..|++++
T Consensus 129 kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~--Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPD--YVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred ccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcH--HHHHHHHHHHHHHhhccHHH
Confidence 45678888888886433 55 667777888888888888888877777765 233 23444444555666677776
Q ss_pred HHH
Q 042941 122 AIN 124 (481)
Q Consensus 122 a~~ 124 (481)
|+.
T Consensus 202 al~ 204 (606)
T KOG0547|consen 202 ALF 204 (606)
T ss_pred HHH
Confidence 654
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4e-12 Score=79.20 Aligned_cols=49 Identities=47% Similarity=0.781 Sum_probs=30.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 276 PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666554
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=1.9e-10 Score=108.90 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
.|+..+|..++.+-.-+|+.+.|..++.+|.+.|++.+..-|..|+-+ .|+..-++.+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 467777777777777777777777777777777776666656666554 66666777777777777777777776654
Q ss_pred HH
Q 042941 422 QD 423 (481)
Q Consensus 422 ~~ 423 (481)
+.
T Consensus 278 vi 279 (1088)
T KOG4318|consen 278 VI 279 (1088)
T ss_pred HH
Confidence 44
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5e-12 Score=78.77 Aligned_cols=48 Identities=42% Similarity=0.703 Sum_probs=21.4
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 206 YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=2.9e-08 Score=93.53 Aligned_cols=289 Identities=13% Similarity=0.085 Sum_probs=144.1
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-HHHHHHHHHcC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-FQGLLSALCRY 151 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~ 151 (481)
..+...|++++|++.++.-... + +| ...........+.+.|+.++|..+|..+.+.+ |+... |..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I-~D--k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-I-LD--KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-C-CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 4455666666666666654443 1 12 14445555666666666777777776666654 33333 33333333111
Q ss_pred -----CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHH
Q 042941 152 -----KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS-REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225 (481)
Q Consensus 152 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 225 (481)
.+.+....+++.+....| .......+.-.+. ....+ ..+...+..+...|+++ +|+.+-..|....+..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCc-cccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 134455555555544432 2222222222222 11222 22334444555555442 3444444444444444
Q ss_pred HHHHHHHHHHHc----C----------CCCCHHHH--HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 226 KVLRLFDQMKRM----G----------IECDRKVY--NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 226 ~a~~~~~~~~~~----~----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
-...++..+... + -+|+...| ..+...|...|++++|+.++++..+..++ .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 444444444321 1 12333223 34455566677777777777766665332 3455556666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWN 369 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 369 (481)
..|++.+|.+.++..+..+. -|..+-+-.+..+.++|++++|.+++.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~---------------------------------~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL---------------------------------ADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh---------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777777777766665431 233344445555666666666666666
Q ss_pred HHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHH
Q 042941 370 EISENGNGPDRS------SY--TALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 370 ~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
...+.+..|... +| .-...+|.+.|++..|++.|...
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 665544322211 11 12345666666666666554443
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=2e-07 Score=86.17 Aligned_cols=397 Identities=13% Similarity=0.108 Sum_probs=203.5
Q ss_pred hcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccH
Q 042941 24 ECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTK 103 (481)
Q Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 103 (481)
..+-++.+-....+.-.+-++-++|........+.. .-+...|+.+.-.+....++++|++.|...... ++.+.
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~----~~dN~ 109 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI----EKDNL 109 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc----CCCcH
Confidence 344444444444444444455555655555443211 235556666666666666666666666666554 23335
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHhHHHHHHHHHcCCChhhHHHHHhhccCC--CCCchHhHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDV--FPFNTKSFNIILN 180 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~ 180 (481)
..+.-+.-.-++.++++........+.+.. |+ ...|..+..++.-.|+...|..+++..... ..|+...+.....
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 555555544555556655555555555432 22 234555555566666666666666553322 1244433332221
Q ss_pred H------HHHhcCCHHHHHHHHHHHHhcCCcccHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 042941 181 G------WCNIIGSSREAERVWMEMSQRGICYDVVSF-SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI-HA 252 (481)
Q Consensus 181 ~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~ 252 (481)
. .. +.|..++|.+.+..-... ..|...+ ..-...+.+.+++++|..++..+... .||...|...+ .+
T Consensus 188 ~Ly~n~i~~-E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 188 LLYQNQILI-EAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHH-HcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 1 22 445555555555433322 1122222 22334456666677777777766665 24444444333 33
Q ss_pred HHcCCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH--
Q 042941 253 LAKGRLVKDAI-SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV-- 329 (481)
Q Consensus 253 ~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-- 329 (481)
+.+..+.-+++ .+|....+.-.. ....-..=++......-.+..-.++..+.++|+++- +..+.+.|......
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHH
Confidence 33233333333 455544443111 111001001111112223344455666667776543 33333333332211
Q ss_pred -HHHHHHHHH----cC----------CCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 042941 330 -FGLLESMRK----MG----------CQPTNDTY--IMLIKKFSRWRQFGNVFKVWNEISENGNGPDRS-SYTALIHALF 391 (481)
Q Consensus 330 -~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 391 (481)
.++.-.+.. .| -+|+...| -.++..|-+.|+++.|...++...+. .|+.. .|..=.+.+.
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHH
Confidence 222222221 11 15665544 45678889999999999999998885 45544 5555667889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhh
Q 042941 392 LNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKA 440 (481)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~ 440 (481)
..|++++|..++++..+.+ .||...-+.-..+..+....+++.+.+..
T Consensus 417 H~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk 464 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK 464 (700)
T ss_pred hcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 9999999999999998865 35665555555666666555555554443
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.8e-08 Score=89.33 Aligned_cols=288 Identities=11% Similarity=0.037 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..........+-..+++.+...+.+...+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-.+.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 3444445555666777777777777777654 445555555566777777766655555556666777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. -.|...+|.+.|.+....... =...|-.+...|+-.|..++|+..+...-+. ++.....+--+.--|.+.+..+.|
T Consensus 323 l-~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 323 L-MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred H-HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 7 677788888877766543211 2345667777777777777777777666553 122222233344456677777778
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCC
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQ 342 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 342 (481)
.+.|.+.....+. |+...+-+--.....+.+.+|..+|+..... .+...... .
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~-------------------------ik~~~~e~-~ 452 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEV-------------------------IKSVLNEK-I 452 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHH-------------------------hhhccccc-c
Confidence 8877777665332 5555665555555667777777777765421 00001111 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 422 (481)
....+++.|..+|.+++.+++|+..+++...... -+..+|.++.-.|...|+++.|.+.|.+..- +.|+..+...++
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 2455788999999999999999999999987643 4888999999999999999999999999874 789987777666
Q ss_pred HH
Q 042941 423 DW 424 (481)
Q Consensus 423 ~~ 424 (481)
..
T Consensus 530 ~~ 531 (611)
T KOG1173|consen 530 KL 531 (611)
T ss_pred HH
Confidence 53
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.8e-09 Score=91.03 Aligned_cols=231 Identities=11% Similarity=0.040 Sum_probs=165.5
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH-HHHHHHHHh
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF-SCIISCYSK 220 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~ 220 (481)
+.+.++|.+.|.+.+|.+.|+..... .|-+.+|-.+-+.|. +.+++..|+.++.+-.+. -|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~-ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQ-RIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHH-HhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45677888888888888877663322 245667777777787 788888888888776654 3444443 345566777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.++.++|.++|+...+.. +.++.....+...|.-.++++.|+++|.++.+.|+. +...|+.+--+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 778888888888777764 456666666777777778888888888888888776 777777777777777888877777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
|.......-.|+. -..+|-.+.......|++..|.+.|+-....+. ...
T Consensus 381 f~RAlstat~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ 429 (478)
T KOG1129|consen 381 FQRALSTATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHG 429 (478)
T ss_pred HHHHHhhccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCc-chH
Confidence 7766544322221 123555566667788999999999988877643 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..+|.|...-.+.|++++|..+++...+.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 68888888888999999999999887763
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=8.2e-07 Score=79.15 Aligned_cols=351 Identities=10% Similarity=0.099 Sum_probs=235.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~ 123 (481)
....|.++|+.. ....|+..+|++.|..=.+...++.|..+|+...-. .|+ ..+|..-.+-=-++|+...+.
T Consensus 156 Ni~gaRqiferW---~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~---v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 156 NIAGARQIFERW---MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPK---VSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred ccHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--ccc---HHHHHHHHHHHHhcCcHHHHH
Confidence 334566666655 233578888888888888888888888888877654 466 677777777777778888888
Q ss_pred HHHHHHhhc-CCC-CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc--hHhHHHHHHHHHHhcCCHHHHHHH----
Q 042941 124 NAFYAYKRF-KFA-VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN--TKSFNIILNGWCNIIGSSREAERV---- 195 (481)
Q Consensus 124 ~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~a~~~---- 195 (481)
.+|+...+. |-. .+...+.+....=.++..++.|.-+|.-..+..|.+ ...|..+...=- +-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK-qfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK-QFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HhcchhhhHHHHhhh
Confidence 888776642 110 111223333333344556667777765544444433 344444444333 55665544443
Q ss_pred ----HHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHcCCChHH
Q 042941 196 ----WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR--KVYNAVI--------HALAKGRLVKD 261 (481)
Q Consensus 196 ----~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li--------~~~~~~g~~~~ 261 (481)
|+.+.+.+ +.|-.+|--.++.-...|+.+...++|+..... ++|-. ..|.-.| -.=....+++.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 23334332 336677888888888889999999999998876 45532 1222222 12235788999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HhchhHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPL----CKARKLDEARQAFDEMLQRGISPTIRTYHAFLDI---IRTGEEVFGLLE 334 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~~~~~~~~~~~~ 334 (481)
+.++|+...+. ++....||..+=-.| .+..++..|.+++...+ |..|-..+|...|.. +...+....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 444566665544444 45788999999998776 457888888888875 444566688888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 335 SMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG-NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
...+.+ +-+..+|.-....-...|+.+.|..+|.-..... +......|-+.|.-=...|.++.|..+|+++.+.
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 888876 5577788888888889999999999999988752 2223446666777667899999999999999875
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.2e-09 Score=90.51 Aligned_cols=229 Identities=15% Similarity=0.054 Sum_probs=172.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-HHHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-FQGLLSA 147 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~ 147 (481)
+-+...|.+.|.+.+|...|+.-.+. .|- +.+|..|-+.|.+..++..|+.+|.+-++. .|-..| .....+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 45667788888888888888887776 333 568888888888888888888888877653 344444 3446677
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKV 227 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a 227 (481)
+-..++.++|.++++......+-++.....+...|. -.++++.|+..|+++.+.|+. +...|+.+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 777788888888888765555566666666677777 788888888888888888877 677788888888888888888
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 228 LRLFDQMKRMGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+.-|+.....--.|+ ...|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 888887776533333 345666777777788888888888888776544 66778877777788888888888888766
Q ss_pred HC
Q 042941 306 QR 307 (481)
Q Consensus 306 ~~ 307 (481)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 54
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.6e-08 Score=87.80 Aligned_cols=289 Identities=11% Similarity=0.036 Sum_probs=225.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 60 GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
+...++.....-..-+-..+++.+..++++.+.+. +++....+..=|..+...|+..+...+=..+++.- +-.+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~ 313 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKAL 313 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCc
Confidence 44567777778888888999999999999999987 66657777777778888999888888888888753 44667
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
+|-++.--|.-.|...+|.+.|.+.....+.=...|-.+...|. -.++.++|+..|....+.=..... .+--+.--|.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgmey~ 391 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHL-PSLYLGMEYM 391 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcc-hHHHHHHHHH
Confidence 88888888888899999999998855443344557888888888 899999999999877654111111 1122334578
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCC----CChhhHHHHHHHHHhcCC
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK--GVA----PNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~~~~li~~~~~~g~ 293 (481)
+.+++..|.++|.+..... +.|+...+-+.-.....+.+.+|...|+..... .+. .-..+++.|-.+|.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8999999999999988874 668888888888888899999999999877621 111 134567888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
+++|+..+++..... +.+..++.++.-.|...|+++.|.+.|.+..-
T Consensus 471 ~~eAI~~~q~aL~l~---------------------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLS---------------------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHHcC---------------------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999887752 45777889999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 042941 374 NGNGPDRSSYTALIHALF 391 (481)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~ 391 (481)
+.|+-.+-..++..+.
T Consensus 518 --l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 518 --LKPDNIFISELLKLAI 533 (611)
T ss_pred --cCCccHHHHHHHHHHH
Confidence 5678777777766444
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=7.8e-07 Score=82.35 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=274.0
Q ss_pred HHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 042941 32 ELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILI 110 (481)
Q Consensus 32 ~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li 110 (481)
..+..++..+ .+++...+.+.+.+....+-+ ..+.....-.+...|+-++|.+....-.+. |+.|...|+.+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc--chhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHH
Confidence 3456666666 467777888888877644433 445556666677889999999988877665 666788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (481)
-.+....++++|+..|..+...+ +-|...+.-+--.-.+.|+++.....-..+-...+.....|..+..++. -.|+..
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~-L~g~y~ 160 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH-LLGEYK 160 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHH
Confidence 88999999999999999998865 3356677766666666677776665555544444556677888888877 899999
Q ss_pred HHHHHHHHHHhcCC-cccHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChHHH
Q 042941 191 EAERVWMEMSQRGI-CYDVVSFSCII------SCYSKARNLHKVLRLFDQMKRMGIECDRKVY-NAVIHALAKGRLVKDA 262 (481)
Q Consensus 191 ~a~~~~~~~~~~g~-~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a 262 (481)
.|..+++...+... .|+...+.... ......|.++.|.+.+..-... ..|...+ ..-...+.+.+++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999887642 45655554322 2345678888888877665543 2344433 3456678899999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHH-HHHhc-CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIK-PLCKA-RKLDEARQAFDEMLQRG---ISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~-~~~~~-g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
..++..+... .||..-|...+. ++.+. +..+....+|....+.- ..|-....+.+ ..-.-...+...+..+.
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-NGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-CcchhHHHHHHHHHHHh
Confidence 9999999987 456666655544 44333 33333336676665542 22222222222 22222233466777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CC----------CCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 042941 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE----NG----------NGPDRSSYT--ALIHALFLNGKLEEAHQ 401 (481)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~~--~l~~~~~~~g~~~~A~~ 401 (481)
+.|+++ ++..+...|-.-...+-..++.-.+.. .| -+|+...|. .++..|-+.|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 778765 344444444332222222222222211 11 145665554 46788999999999999
Q ss_pred HHHHHHHCCCCCCHhHHH-HHHHHHhhhhHHHHHHHHHhhcCccC-CCCccc--cccccccchhhccCccccchhcccc
Q 042941 402 YYMEMKEKQLLPEPKTDE-LLQDWSYNKQFVERQIASLKAHQPQS-GQNTRV--ISKKSDQDREFLQQPETRRVVRHQG 476 (481)
Q Consensus 402 ~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--l~~~~~~~~~~~~a~~~r~~~~~~~ 476 (481)
+++....+ .|+.+-.- .=.+.+.-.|+.+++...+.+.+.-| ++.+.. -++...+..+.++|.++-.+-.+-|
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99998864 56654433 33355666778888887777776633 333332 3556667777777777776666555
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=1.4e-07 Score=87.96 Aligned_cols=242 Identities=16% Similarity=0.100 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CC-CCCHH-hHHHHHHHHHcCCChhhHHHHHhhcc-------CC-
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRF-----KF-AVGIE-DFQGLLSALCRYKNVQDAEHLMFCNK-------DV- 167 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~- 167 (481)
..+...+...|...|++++|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++. ..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888899999999999998887754 21 23333 33446678888888888888886631 11
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCc-ccH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-----GIC-YDV-VSFSCIISCYSKARNLHKVLRLFDQMKRMG-- 238 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----g~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 238 (481)
.+.-..+++.|...|. +.|++++|...+++..+. |.. |.. ..++.+...|...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2223345666777788 888888888877765432 222 222 235566677788888888888887655421
Q ss_pred -CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 239 -IEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEKG-------VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 239 -~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+.+ -..+++.|...|...|++++|.++|+.+.+.. ..-....++.+...|.+.+++.+|..+|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 23577888888888888888888888776431 111234566777788888888888888776432
Q ss_pred CCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 307 RGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG--CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 307 ~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
- +...| .+-...+|..|...|.+.|+++.|.++.+....
T Consensus 438 i----------------------------~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 I----------------------------MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H----------------------------HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 11111 122345788888899999999999888877653
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.1e-08 Score=91.04 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=70.5
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
+++.-.|.+.|+..+.-..- +...|..+..+|....+.++.+..|....+. |+.++.+|..-.....-.+++++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHH
Confidence 34444444555444422211 1111444444555555555555555555443 33334444444444444455555
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|..=|++..+.+ +-+...|..+.-+.-+.+.++++...|++.+..+|.-+..|+.....+. ..++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt-DqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT-DQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh-hHHhHHHHHHHHHHHHh
Confidence 555555544432 1123333334444444445555555555554445555555555555555 55555555555554433
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=6.8e-07 Score=84.44 Aligned_cols=254 Identities=13% Similarity=0.060 Sum_probs=180.5
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc-----
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV----- 116 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~----- 116 (481)
.++.++|++.++... ..+.............+.+.|+.++|..+|..+.++ +|.+..-|..+..+..-.
T Consensus 17 ~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 17 AGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred CCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHhhhccccc
Confidence 588999999998653 223344667778889999999999999999999998 444566677777666333
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH-hh-ccCCCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM-FC-NKDVFPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
.+.+....+|+.+...- |.......+.-.+.....+.....-| .. +..|+| .+|+.+-..|. ......-..+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~-d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYK-DPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc-ChhHHHHHHH
Confidence 35788889999887643 44333333332233323343333222 22 445543 35555555555 5555555666
Q ss_pred HHHHHHhc----C----------CcccHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 195 VWMEMSQR----G----------ICYDVV--SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 195 ~~~~~~~~----g----------~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
++...... + -.|+.. ++..+...|...|++++|++.++..+++. +..+..|..-.+.+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 66655432 1 123332 44566778889999999999999999873 3347788999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
+.+|.+.++...+.... |...-+..+..+.++|+.++|..++....+.+.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999998765 888888899999999999999999999987764
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=7.5e-07 Score=82.46 Aligned_cols=196 Identities=12% Similarity=0.034 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHH
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PNV--VTYNSLIKPLC 289 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~ 289 (481)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++....... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666666553 334455555666666666666666666665543221 111 12334555566
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhchh------HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc
Q 042941 290 KARKLDEARQAFDEMLQRGI-SPTIRTY-H--AFLDIIRTGE------EVFGLLESMRKMG-CQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 358 (481)
..|++++|..++++...... .+..... + .++..+...+ ....+........ .............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 66666666666666543221 1111111 1 1111111111 1111111111110 011112223567778899
Q ss_pred CChhHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 359 RQFGNVFKVWNEISENGNG------P--DRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
|+.+.|..+++.+...... . ..........++...|++++|.+.+.+....
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999988763221 0 1112222334566899999999999887654
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=3.3e-07 Score=86.45 Aligned_cols=398 Identities=14% Similarity=0.092 Sum_probs=248.6
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-C
Q 042941 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV-G 137 (481)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 137 (481)
..+.-+...|..+.-++.+.|+++.+-+.|++...- .......|..+...+...|.-..|..+++........| +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 344568889999999999999999999999987654 22236788888888999999999999998876544234 3
Q ss_pred HHhHHHHHHHHH-cCCChhhHHHHHhhccC---C--CCCchHhHHHHHHHHHH----------hcCCHHHHHHHHHHHHh
Q 042941 138 IEDFQGLLSALC-RYKNVQDAEHLMFCNKD---V--FPFNTKSFNIILNGWCN----------IIGSSREAERVWMEMSQ 201 (481)
Q Consensus 138 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~l~~~~~~----------~~~~~~~a~~~~~~~~~ 201 (481)
+..+-..-..|. +.+.+++++..-.++.+ + .......|..+.-+|.. +.....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333333333343 44666666665544221 1 11122333333333321 11234567788888877
Q ss_pred cCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChh
Q 042941 202 RGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK-GVAPNVV 279 (481)
Q Consensus 202 ~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 279 (481)
.+.. |+..-| +.--|+-.++.+.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...+. |. |..
T Consensus 473 ~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~ 548 (799)
T KOG4162|consen 473 FDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHV 548 (799)
T ss_pred cCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhh
Confidence 6543 433333 23346778899999999999998755678899999999999999999999999876543 21 111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C--CCC-----CHHHHHHHHHHHhchhHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQR---------------------G--ISP-----TIRTYHAFLDIIRTGEEVFG 331 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------~--~~p-----~~~~~~~li~~~~~~~~~~~ 331 (481)
....-+..-...|+.++++.....+... | ..+ ...++..+..-.........
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1111122222356666665554443210 0 000 11122222111110000000
Q ss_pred HHHHHHHcCCC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 332 LLESMRKMGCQ--PT------NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 332 ~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
.-..+...... |+ ...|......+.+.+..++|...+.+..... +-....|......+...|.+++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00001111111 22 1235566777889999999998888887753 335667777778889999999999999
Q ss_pred HHHHHCCCCCCH-hHHHHHHHH---HhhhhHHHH--HHHHHhhcCccCCCCccccccccccchhhccCcc
Q 042941 404 MEMKEKQLLPEP-KTDELLQDW---SYNKQFVER--QIASLKAHQPQSGQNTRVISKKSDQDREFLQQPE 467 (481)
Q Consensus 404 ~~m~~~~~~p~~-~~~~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 467 (481)
..... +.|+. .+...+... .++.+.++. .++...+.+|.++++|..+|.++.++|+.++|.+
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 98876 45544 333344333 455666666 8899999999999999999999999999987754
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=9.1e-08 Score=89.17 Aligned_cols=243 Identities=14% Similarity=0.155 Sum_probs=139.8
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhccCC-------CCCchHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCc
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNKDV-------FPFNTKS-FNIILNGWCNIIGSSREAERVWMEMSQR-----GIC 205 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----g~~ 205 (481)
.++..+...|...|+++.|..++...... ..|...+ .+.+...|. ..+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555666777777777777666542111 1222222 223444555 666777777666665432 211
Q ss_pred -c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHc---C
Q 042941 206 -Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IECDR-KVYNAVIHALAKGRLVKDAISLMKSMEEK---G 273 (481)
Q Consensus 206 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 273 (481)
| -..+++.|...|.+.|++++|...++...+. | ..|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 1234555556666777766666555544321 1 11121 22344555566666677666666654322 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHH
Q 042941 274 VAPN----VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYI 349 (481)
Q Consensus 274 ~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (481)
+.++ ..+++.+...|...|++++|.+++++.+... ++.......-....++
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~-------------------------~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL-------------------------RELLGKKDYGVGKPLN 413 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-------------------------HhcccCcChhhhHHHH
Confidence 1111 2356666666666777777777766654421 0000111122345678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEISE----NGN-GPD-RSSYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
.+...|.+.++++.|.++|.+... .|. .|+ ..+|..|...|.+.|++++|+++.+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 889999999999999988876544 332 223 4478899999999999999999988765
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-06 Score=75.66 Aligned_cols=291 Identities=11% Similarity=0.064 Sum_probs=201.6
Q ss_pred HhcCCHHHHHHHHHHHhhcC-CCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 114 CAVHDVGRAINAFYAYKRFK-FAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
+-.++...+...+-.+.... ++-+......+.+++...|+.++|+..|+......|.+........-.+. +.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhH
Confidence 33455555555554444333 34456778889999999999999999999876644444433333333334 78888888
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+...+.... +.+...|-.-.......+++..|+.+-++..+.+ +.+...|..-...+...|++++|.-.|......
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 88888776542 1133334444455566788999999998888764 445556666667788899999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhc----hhHHHHHHHHHHHcCCCCC-HH
Q 042941 273 GVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAF-LDIIRT----GEEVFGLLESMRKMGCQPT-ND 346 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~----~~~~~~~~~~~~~~~~~~~-~~ 346 (481)
.+ .+...|.-|+.+|...|++.+|...-+...+. ...+..+.+.+ ...|.- .+.+.++++.-.. +.|+ ..
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 33 37889999999999999999998777665442 11233444333 122222 2334444444333 2343 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 415 (481)
..+.+...|...|..+.+..+++..... .||....+.|...+...+.+++|.+.|..... +.|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 5667788899999999999999988773 58999999999999999999999999998876 44544
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=3.5e-07 Score=81.57 Aligned_cols=221 Identities=13% Similarity=-0.017 Sum_probs=117.6
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE 158 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 158 (481)
+..+.++.-+.++....-..+......|..+...+...|+.+.|...|+...+.. +.++..|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455566666666543211111113445566666666677777777777666644 224566666777777777777777
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
..|++.....|.+...+..+...+. ..|++++|.+.|+...+... +..........+...+++++|...|.......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 7776655444445556666666666 66777777777776665532 21111111222334556777777775544321
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK---GV--A-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
.|+...+ .+. ....|+...+ ..++.+.+. .+ . .....|..+...+.+.|++++|...|+...+.+
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 122 2223444333 233333321 00 0 123456667777777777777777777776654
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.6e-07 Score=83.66 Aligned_cols=226 Identities=10% Similarity=-0.088 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHS--TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
..+.++.-+..+.......|+ ...|..+...+.+.|++++|...|+...+. ++.++.+|+.+...+...|+++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHH
Confidence 446677777777654444443 466888888999999999999999999886 44458899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|...|+...+... -+..++..+..++...|++++|.+.|+......|.+.. ......... ..+++++|...|.....
T Consensus 117 A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~-~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAE-SKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-ccCCHHHHHHHHHHHHh
Confidence 9999999998652 24677888889999999999999999886554443432 222222233 67889999999976554
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---GI---ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
.. .|+...+ .+ .....|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+.++.
T Consensus 194 ~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 KL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred hC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 32 2332222 22 22334554443 344444421 11 123457889999999999999999999999987543
Q ss_pred CChhhHH
Q 042941 276 PNVVTYN 282 (481)
Q Consensus 276 ~~~~~~~ 282 (481)
+..-+.
T Consensus 269 -~~~e~~ 274 (296)
T PRK11189 269 -NFVEHR 274 (296)
T ss_pred -hHHHHH
Confidence 444443
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-06 Score=74.90 Aligned_cols=263 Identities=9% Similarity=0.000 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH-HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI-EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
......+...+...|+.++|+..|+.....+ |+. .......-.+.+.|+++....+...+-.........|-.-...
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 6666777777777777777777777766533 322 2222233344566666666665555433322333344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
.. ..+++..|+.+-++..+.... +...|-.-...+...+++++|.-.|+...... +-+...|.-|+.+|...|++.+
T Consensus 310 l~-~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 310 LY-DEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hh-hhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 45 567777777777776665322 33344444456667777777777777776653 3466777778888887777777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHH-HH-HHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhchhHHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLI-KP-LCKARKLDEARQAFDEMLQRGISPTIR----TYHAFLDIIRTGEEVFGLLES 335 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li-~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~~~~~ 335 (481)
|.-+-+...+. +.-+..+.+.+- .. +.....-++|..+++.-.+. .|+.. ...-|...-.+.+++..+++.
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 76655544332 122444444431 11 12233356677777665443 24432 222222223344555666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042941 336 MRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 375 (481)
... ..||....+.|.+.+.-.+.+.+|.+.|......+
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 544 36888888899999999999999999998887754
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=1.3e-05 Score=74.53 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=133.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 50 TFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 129 (481)
..|+...+..++..-...|...+......|-++.+..+|++.++. + +..-.--|..++..+++++|-+.+...
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~---P~~~eeyie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----A---PEAREEYIEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----C---HHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 444444444444444455666666666777778888888887765 4 555666777778888888888877776
Q ss_pred hhcC------CCCCHHhHHHHHHHHHcCCChhh---HHHHHhhccCCCC-CchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 130 KRFK------FAVGIEDFQGLLSALCRYKNVQD---AEHLMFCNKDVFP-FNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 130 ~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
+... .+.+...|..+.+..++..+.-. ...++......++ .-...|.+|..-|. +.|.+++|.++|++.
T Consensus 196 ln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI-r~g~~ekarDvyeea 274 (835)
T KOG2047|consen 196 LNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI-RSGLFEKARDVYEEA 274 (835)
T ss_pred cCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Confidence 5321 12233445555555554433222 2233332222221 11235667777777 777777777777665
Q ss_pred HhcCCcccHHhHHHHHHHHHh-----------------------------------------------------------
Q 042941 200 SQRGICYDVVSFSCIISCYSK----------------------------------------------------------- 220 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~----------------------------------------------------------- 220 (481)
...-. +..-|..+.++|+.
T Consensus 275 i~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 275 IQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 44311 11111111111111
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hhhHHHH
Q 042941 221 -------ARNLHKVLRLFDQMKRMGIEC------DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN---VVTYNSL 284 (481)
Q Consensus 221 -------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 284 (481)
.|+..+....|.+..+. +.| -...|..+.+.|-.+|+++.|..+|++..+-..+-- ..+|..-
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~w 431 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAW 431 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 12333334444443332 111 123456777778888888888888888876533311 2344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 042941 285 IKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~ 305 (481)
...=.++.+++.|+++++...
T Consensus 432 aemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhh
Confidence 455556677788887777653
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=3.6e-07 Score=73.80 Aligned_cols=198 Identities=11% Similarity=-0.024 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
+...|.-.|...|+...|..-+++.++.+ +-+..+|..+...|.+.|+.+.|.+-|++.....|.+..+.|-....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC- 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC- 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-
Confidence 34445555666666666666666666543 1234455555566666666666666666554444555556666666666
Q ss_pred hcCCHHHHHHHHHHHHhcC-CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 185 IIGSSREAERVWMEMSQRG-ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6666666666666655431 11123455666666666666666666666666653 223445555666666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..++.....+. ++..+.-..|+.--..|+.+.+.++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666665544 5666666666666666666666665555544
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.3e-07 Score=79.09 Aligned_cols=325 Identities=15% Similarity=0.119 Sum_probs=160.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH-HHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG-LLS 146 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~ 146 (481)
+.+.+..+.+..++++|++++..-.++ ++.+....+.+..+|-...++..|-..|+.+-.. .|...-|.. -..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 344444455555555555555554444 2223444555555555555555555555555432 233322221 122
Q ss_pred HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG--WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
.+-+.+.+..|+++...+.+. ++...-..-+.+ .. ..+++..+..++++....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkY-se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKY-SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhc-ccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 333444455555555444332 111111111111 11 3455555555555554322 222222222333455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-------------C--------------
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-------------N-------------- 277 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~-------------- 277 (481)
+.|.+-|+...+.+---....|+..+. ..+.|+++.|++...++.+.|++- |
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 555555555554321222344443332 234455555555555555544321 1
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH--HHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 278 -VVTYNSLIKPLCKARKLDEARQAFDEMLQRG-ISPTIRTYHAF--LDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIK 353 (481)
Q Consensus 278 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (481)
+..+|.-...+.+.|+++.|.+.+-.|.-+. ...|++|...+ .++-++.++...-+..+.+.+ +....||..++-
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 1122333334567789999999888886442 34466665543 333344444455556666554 345678999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 042941 354 KFSRWRQFGNVFKVWNEISENGN-GPDRSSYTALIHALF-LNGKLEEAHQYYMEMK 407 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 407 (481)
.||+..-++.|-+++.+-..... -.+...|+. +.++. -.-..++|++=++.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999988765433211 123444543 34443 3445677766555543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.02 E-value=5.9e-07 Score=72.59 Aligned_cols=199 Identities=8% Similarity=-0.060 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
.+..-+.-.|.+.|++..|..-+++.++. |+.+..+|..+...|-+.|..+.|.+.|++..+.. +-+..+.|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh
Confidence 34556667788999999999999999987 66678899999999999999999999999998865 33667888889
Q ss_pred HHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 146 SALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
-.+|..|.+++|...|++... ..+.-..+|.-+.-+.. +.|+++.|...|++..+.... ...+.-.+.....+.|+
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhccc
Confidence 999999999999999988432 24445567777777777 899999999999998877433 33456677788889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+..|...++.....+. ++..+.-..|+.--..|+.+.+.+.=.++...
T Consensus 189 y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 189 YAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred chHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999888874 88888888888888899988888776666654
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=1.3e-05 Score=74.23 Aligned_cols=156 Identities=6% Similarity=-0.087 Sum_probs=72.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH---HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG---LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
.+...|++++|...++...+.. +.+...+.. ........+..+.+.+.+.......+........+...+. ..|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCC
Confidence 3444566666666666555432 112222221 1111112233333444433322222222233333344444 5666
Q ss_pred HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCChHHHHHH
Q 042941 189 SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-ECDR--KVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 189 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~ 265 (481)
+++|...+++..+.... +...+..+..++...|++++|...++....... .|+. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666554322 334455555566666666666666665554321 1121 2233455556666666666666
Q ss_pred HHHHH
Q 042941 266 MKSME 270 (481)
Q Consensus 266 ~~~~~ 270 (481)
+++..
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 66654
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=1.2e-07 Score=83.22 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=76.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cC
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK----AR 292 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 292 (481)
.+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+. . +..+...+..+++. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCch
Confidence 344455666665555431 23444555555666666666666666666543 1 22333333333332 22
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEIS 372 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 372 (481)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..
T Consensus 182 ~~~~A~y~f~El~~~---------------------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK---------------------------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCCHHHHHHHHHHCC---------------------------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhc---------------------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555555555432 23455566666666666677777776666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 042941 373 ENGNGPDRSSYTALIHALFLNGKL-EEAHQYYMEMKE 408 (481)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 408 (481)
..+. -++.+...++.+....|+. +.+.+++.++..
T Consensus 229 ~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 229 EKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred Hhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5432 2445555566666666665 455566666554
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=2.8e-05 Score=67.08 Aligned_cols=376 Identities=11% Similarity=0.056 Sum_probs=199.0
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++...|..+++... ..+-.-...+--.+...+.+.|++++|...|..+.+..-.| ...+..+.-.+.-.|.+.+
T Consensus 35 ~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIE 109 (557)
T ss_pred cccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHH
Confidence 367788888888774 22211222333445556678899999999999887753222 4555556666666788888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|..+-.... .++-.-..++....+.++-++-..+.+.+.+.. .---++..... ..-.+.+|+++|.....
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----EdqLSLAsvhY-mR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----EDQLSLASVHY-MRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----HHHHhHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 887765532 234444456666677777777666666655432 22223333333 45667788888888776
Q ss_pred cCCcccHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCh-------------------
Q 042941 202 RGICYDVVSFSCII-SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK--GRLV------------------- 259 (481)
Q Consensus 202 ~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~------------------- 259 (481)
. .|+-...|..+ -+|.+..-++-+.+++.-..+. ++.+....|.......+ +|+.
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 5 23444444333 3556666677777777666554 22233333332222222 1111
Q ss_pred --------------HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------
Q 042941 260 --------------KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR------------------ 307 (481)
Q Consensus 260 --------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------ 307 (481)
+.|++++-.+.+. -| ..--.++-.|.+.+++.+|..+.+++.-.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 1111111111111 01 11122333455666666666666554211
Q ss_pred --------------------C----CCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 042941 308 --------------------G----ISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGN 363 (481)
Q Consensus 308 --------------------~----~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 363 (481)
+ --|...+..+.+-.+.+.+++.-.+..+...-...|...| .+..+++-.|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHH
Confidence 0 1122222222222222223333333333322222333333 36778888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-HHhhhhH---HHHHHHHH
Q 042941 364 VFKVWNEISENGNGPDRSSYT-ALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD-WSYNKQF---VERQIASL 438 (481)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~---~~~~~~~~ 438 (481)
|.++|-++....++ |..+|- .|.++|.+.++++.|++++-++- ...+..+..-++. -|.+.++ +.+++..+
T Consensus 412 aEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 412 AEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999887765554 455555 45678899999999987765442 2233333333332 3333333 34666666
Q ss_pred hhcCcc
Q 042941 439 KAHQPQ 444 (481)
Q Consensus 439 ~~~~~~ 444 (481)
...+|.
T Consensus 488 E~lDP~ 493 (557)
T KOG3785|consen 488 EILDPT 493 (557)
T ss_pred HccCCC
Confidence 666653
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=5.7e-07 Score=75.30 Aligned_cols=289 Identities=12% Similarity=0.038 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH-HHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI-ILNGWC 183 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~ 183 (481)
-+.+.+..+++..++..|++++..-.+.. +.+......|..+|-...++..|-..++++....| ...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHH
Confidence 35566777788899999999998777654 22666778888999999999999999998766543 3333332 345556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCII--SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+.+.+..|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+.......+.|+++.
T Consensus 90 -~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 -KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred -HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 789999999999988764 2222111112 22345778888888888766433 45555556666678999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS-------------PTIR--------TYHAFL 320 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------p~~~--------~~~~li 320 (481)
|.+-|+...+-+---....|+..+..| +.|+++.|++...+++++|++ ||+. ..+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987764333567788766555 668999999999999988753 2321 223344
Q ss_pred HHHhc-------hhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042941 321 DIIRT-------GEEVFGLLESMRKM----GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHA 389 (481)
Q Consensus 321 ~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (481)
.++.- .++....-+.+... ....|+.|...+.-.= -.+++....+-+.-+..... ....|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 43321 11112222222221 1223555655443221 23456666666666666533 346688889999
Q ss_pred HHhcCCHHHHHHHHHH
Q 042941 390 LFLNGKLEEAHQYYME 405 (481)
Q Consensus 390 ~~~~g~~~~A~~~~~~ 405 (481)
||+..-++-|-.++-+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 9999999988887655
No 85
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=8.2e-09 Score=57.54 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 375 GNGPDRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.9e-05 Score=71.94 Aligned_cols=393 Identities=13% Similarity=0.058 Sum_probs=236.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|+..|.....-. ++|...|+.-..+|+..|++++|++=-.+-.+. .|+ =+..|+....++.-.|++++
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~--w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPD--WAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCc--hhhHHHHhHHHHHhcccHHH
Confidence 478899999999886555 358889999999999999999998766665554 444 26789999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh------ccCC----CCCchHhHHHHHHHHHH-------
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC------NKDV----FPFNTKSFNIILNGWCN------- 184 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~----~~~~~~~~~~l~~~~~~------- 184 (481)
|+..|.+-++.. +-+...++.+..++... . .+.+.|.. +... .......|..++..+-.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999988754 22455667777777211 1 11122211 1000 00011122223222210
Q ss_pred --hcCCHHHHHHHHHHH-----HhcC-------Ccc----------------------cHHhHHHHHHHHHhcCCHHHHH
Q 042941 185 --IIGSSREAERVWMEM-----SQRG-------ICY----------------------DVVSFSCIISCYSKARNLHKVL 228 (481)
Q Consensus 185 --~~~~~~~a~~~~~~~-----~~~g-------~~~----------------------~~~~~~~ll~~~~~~~~~~~a~ 228 (481)
.......+..++... ...| ..| -..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111222211110 0001 111 0112445677777888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCCHHHHHHHH
Q 042941 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS-------LIKPLCKARKLDEARQAF 301 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~ 301 (481)
+-+....... -+..-++....+|...|.+..+...-+...+.|-. ...-|+. +-.+|.+.++++.|...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9888888764 45666677778899999888887777776665432 2222333 233566678899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND-TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
.+.......|+.. +.+...+++.+..+...- +.|... -...-...+.+.|++..|...+.++.+.. +-|.
T Consensus 322 ~kaLte~Rt~~~l------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da 392 (539)
T KOG0548|consen 322 QKALTEHRTPDLL------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDA 392 (539)
T ss_pred HHHhhhhcCHHHH------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cchh
Confidence 9876655444432 222222222222221111 122221 11222556778899999999999988876 3477
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HH---HHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccccc
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT-DE---LLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKS 456 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 456 (481)
..|....-+|.+.|.+..|++-.+.-++. .|+... |. ..+....+...+.+++....+.+|.+.+....+...+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 78888888899999999888887777664 343322 11 2222333444555666777777777766666666555
Q ss_pred cc
Q 042941 457 DQ 458 (481)
Q Consensus 457 ~~ 458 (481)
..
T Consensus 471 ~a 472 (539)
T KOG0548|consen 471 EA 472 (539)
T ss_pred HH
Confidence 44
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.79 E-value=7.4e-05 Score=64.29 Aligned_cols=312 Identities=13% Similarity=0.103 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH-
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF- 141 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 141 (481)
.++.-.--+...+...|++..|+.-|....+- |+.+..++-.-...|...|+-..|+.-+.+.++ .+||-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH
Confidence 34555666777788888888888888888776 632333333334467777887778777777776 35654321
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..-...+.+.|.+++|..=|+.+....+ + .|...++.+-+.... ........+..+.-.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~-s--------------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEP-S--------------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGS 168 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCC-C--------------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcC
Confidence 1123456677777777777766433222 1 111111111111110 011122334445667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
|+...|+.....+.+.. +.|...|..-..+|...|++..|..=++...+..-. ++.++--+-..+...|+.+.++...
T Consensus 169 GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH
Confidence 78888888888877764 557777777788888888888777766666554322 5555556666677778888777777
Q ss_pred HHHHHCCCCCCHHH----HH---HHHHHHhchhHH---------HHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCC
Q 042941 302 DEMLQRGISPTIRT----YH---AFLDIIRTGEEV---------FGLLESMRKMGCQPT-----NDTYIMLIKKFSRWRQ 360 (481)
Q Consensus 302 ~~m~~~~~~p~~~~----~~---~li~~~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~ 360 (481)
++..+.+ ||... |. .+...+...+.. .+..+...+. .|. ...+..+-.++...|+
T Consensus 247 RECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 247 RECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCC
Confidence 7776653 44321 11 111112111111 1111122222 232 2234556667778899
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 361 FGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.+|++...+..+. .|+ ..++.--..+|.-...+++|+.-|+...+.
T Consensus 323 ~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999888874 344 778888888999999999999999888764
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=0.00016 Score=67.45 Aligned_cols=178 Identities=9% Similarity=0.063 Sum_probs=94.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLS 146 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 146 (481)
.|-..+..+.++|++......|+..+.. -|-......|...+.-....+-++.++.+|++.++. ++..-+..+.
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALra--LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHh--CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 4555555666666666666666665443 111111345555666666666677777777776653 3333455666
Q ss_pred HHHcCCChhhHHHHHhhccC-------CCCCchHhHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCccc--HHhHHHH
Q 042941 147 ALCRYKNVQDAEHLMFCNKD-------VFPFNTKSFNIILNGWCNIIGSSRE---AERVWMEMSQRGICYD--VVSFSCI 214 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~l 214 (481)
-+++.+++++|.+.+..+.. ..+.+...|..+..... +..+.-. ...+++.+... -+| ...|..|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis-~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS-QNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH-hCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 66777777777766655321 13344555555555544 3322221 22222222221 123 2456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
..-|.+.|.++.|..+|++..+. ..+..-|+.+.++|+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 77777777777777777766554 2344444444444443
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=3.4e-07 Score=80.44 Aligned_cols=228 Identities=15% Similarity=0.141 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE-CDRKVYNAVIHA 252 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 252 (481)
....+.+++. ..|+++.++ .++.... .|.......+...+....+-+.+..-+++....... .+..........
T Consensus 37 ~~~~~~Rs~i-Alg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYI-ALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHH-HTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 3444556666 666655433 3332222 455555544444443334445555444443333222 223333333456
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHH
Q 042941 253 LAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGL 332 (481)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~ 332 (481)
+...|++++|+++++.. .+.......++.|.+.++++.|.+.++.|.+.+ .|. +...
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~q-------------- 168 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQ-------------- 168 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHH--------------
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHH--------------
Confidence 67789999999888653 366777788999999999999999999998753 221 1111
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
...+.+..+...+.+.+|.-+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+..
T Consensus 169 --------------La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 169 --------------LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp --------------HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred --------------HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 1222333333445799999999998765 5678999999999999999999999999998765422
Q ss_pred CCHhHHHHHH--HHH-hhh-hHHHHHHHHHhhcCccC
Q 042941 413 PEPKTDELLQ--DWS-YNK-QFVERQIASLKAHQPQS 445 (481)
Q Consensus 413 p~~~~~~~l~--~~~-~~~-~~~~~~~~~~~~~~~~~ 445 (481)
++.|..-++ ..+ ++. +..++.+..++..+|+.
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 233333222 233 233 34677888888887764
No 90
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=1.4e-05 Score=71.32 Aligned_cols=215 Identities=7% Similarity=-0.048 Sum_probs=146.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
+++.+-..+...++.++|+.+++.+++. ++.+..+|+.--..+...| ++++++..++.+.+.+.+ +..+|+.-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHH
Confidence 3444445556677888999999998876 4444566766666666666 578999999988876533 555676555
Q ss_pred HHHHcCCCh--hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc--
Q 042941 146 SALCRYKNV--QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA-- 221 (481)
Q Consensus 146 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-- 221 (481)
-++.+.|.. +++..+++.+....+.+..+|+.....+. ..|+++++++.++++.+.++. +...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc
Confidence 445555542 56677777766666778888888888887 888899999999998887655 566676665555444
Q ss_pred -CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 222 -RN----LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG----RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 222 -~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
|. .++.+.....+.... +-|...|+-+...+... +...+|...+.+..+.++. +......|+..|+.
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 22 245666666666653 45677787777777663 3445677777777665443 66677777777775
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2e-08 Score=55.97 Aligned_cols=32 Identities=59% Similarity=0.977 Sum_probs=17.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 273 GVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00028 Score=65.27 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhh-cCHHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHH--hccCChhHHHHHHHHHh
Q 042941 18 MRNKIEECGIKVSSELVSEVLSWVR-NDWEAAFTFFLWAGKQSGYAHSTREYHTM--IAIL--GKVRKFDTAWALIDEMR 92 (481)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g~~~~a~~~~~~~~ 92 (481)
.-..+...+..+...+...|+.... ..+++|+.+.+.- .+ ..++++. =.+| -+.+..++|+..++...
T Consensus 34 ~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~----~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 34 TANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GA----LLVINSFFFEKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred HHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---ch----hhhcchhhHHHHHHHHHcccHHHHHHHHhccc
Confidence 3333444443444444555555442 4566776444322 11 1122222 3333 36777888888777332
Q ss_pred cCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 93 GGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 93 ~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
. + +..+...-...+-+.|++++|+.+|+.+.+.+
T Consensus 107 ~-----~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 107 R-----L--DDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred c-----c--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 2 2 24455555666777888888888888886654
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.69 E-value=0.00033 Score=73.67 Aligned_cols=333 Identities=12% Similarity=0.009 Sum_probs=198.6
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCCH--HhHHHHH
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF------AVGI--EDFQGLL 145 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~ll 145 (481)
.+...|+++.+...++.+.......+ +.........+...|+++++...+......-- .+.. .....+.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~---~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLEN---PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcC---cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34456777777777766532211112 22233444555678999999999887754211 1111 1222233
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCC-c----hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc-ccHHhHHHHH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPF-N----TKSFNIILNGWCNIIGSSREAERVWMEMSQR----GIC-YDVVSFSCII 215 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll 215 (481)
..+...|+++.|...++......+. + ....+.+...+. ..|++++|...+++.... |.. +...++..+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 5566889999999998774332211 1 123455555666 799999999999887643 111 1123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCC--ChhhHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRM----GIE--C-DRKVYNAVIHALAKGRLVKDAISLMKSMEEKG--VAP--NVVTYNSL 284 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l 284 (481)
..+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788999999999998876552 211 1 22334455666777899999999998875431 111 23334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH-----HHHHHh---chhHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 042941 285 IKPLCKARKLDEARQAFDEMLQRGIS-PTIRTYHA-----FLDIIR---TGEEVFGLLESMRKMGCQPT---NDTYIMLI 352 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~-----li~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ 352 (481)
...+...|+++.|...+......... .....+.. .+..+. ..+.+...+........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66777899999999999887542110 01111111 111112 22233333333222111111 11234567
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 353 KKFSRWRQFGNVFKVWNEISEN----GNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
.++...|++++|...+++.... |..++ ..++..+..++.+.|+.++|...+.+..+..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7788999999999999987652 33222 2356677788899999999999999988764
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=0.00043 Score=66.14 Aligned_cols=206 Identities=10% Similarity=-0.043 Sum_probs=137.8
Q ss_pred CCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHH
Q 042941 27 IKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ 104 (481)
Q Consensus 27 ~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (481)
+.-++.++..+--++ +++...+.+.|+... ++..-..+.|+.+...++..|.-..|..+.+.-....-.|+ +..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps--~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS--DIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC--cch
Confidence 333555555554444 577788888888774 34445778899999999999999999999988766543344 244
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHhhcC----CCCCHHhHHHHHHHHHcCC-----------ChhhHHHHHhhccCCC
Q 042941 105 TLLILIRRYCA-VHDVGRAINAFYAYKRFK----FAVGIEDFQGLLSALCRYK-----------NVQDAEHLMFCNKDVF 168 (481)
Q Consensus 105 ~~~~li~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~ 168 (481)
.+...-+.|.. .+..++++....+..... -...+..|..+.-+|...- .-.++++.+++.....
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444 366777777666665411 1223444555554443221 1234556666654433
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
+.|+.+...+.--|+ ..++.+.|.+..++....+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 475 ~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 444444444444556 78999999999999999877778999999999999999999999999877653
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00034 Score=64.77 Aligned_cols=212 Identities=8% Similarity=0.008 Sum_probs=116.7
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
+++++|......+... .+.+..++.+=+-++.+.+++++|+.+.+.-... ..+ ..-+.--..+.-+.+..++|
T Consensus 26 ~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~---~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVI---NSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhc---chhhHHHHHHHHHcccHHHH
Confidence 4567777777777432 2456777788888888888888888555443221 001 11111112233456788888
Q ss_pred HHHHHHHhhcCCCCC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 123 INAFYAYKRFKFAVG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
+..++ |..++ ..+...-...+-+.|++++|..+|..+.....++. ...+.+-+...+-...+. + +..
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~---d~~~r~nl~a~~a~l~~~-~---~q~ 166 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ---DEERRANLLAVAAALQVQ-L---LQS 166 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHhhhHH-H---HHh
Confidence 88877 22332 33555555667788888888888888644322222 122211110000001111 1 222
Q ss_pred cCCcccHHhHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHcCCChHHHHH
Q 042941 202 RGICYDVVSFSCII---SCYSKARNLHKVLRLFDQMKRMG-------IECDRK-------VYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 202 ~g~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~li~~~~~~g~~~~a~~ 264 (481)
....| ..+|..+. -.+...|++.+|+++++...+.+ -.-+.. .-.-+..++...|+-++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22222 33444333 34567899999999998884322 111111 11234455677899999999
Q ss_pred HHHHHHHcCC
Q 042941 265 LMKSMEEKGV 274 (481)
Q Consensus 265 ~~~~~~~~~~ 274 (481)
++....+...
T Consensus 246 iy~~~i~~~~ 255 (652)
T KOG2376|consen 246 IYVDIIKRNP 255 (652)
T ss_pred HHHHHHHhcC
Confidence 9999988754
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.5e-05 Score=78.86 Aligned_cols=223 Identities=9% Similarity=0.043 Sum_probs=151.2
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcc---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICY---DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
.|.+...|-..|.... ..++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.+.. -..
T Consensus 1454 sPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 4556667777777777 778888888888776553 1111 12356666666666677777778888777753 124
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDII 323 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 323 (481)
..|..|...|.+.+.+++|-++++.|.+. ..-....|...+..+.+.++-+.|..++.+..+.- |.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk----------- 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PK----------- 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--ch-----------
Confidence 55677778888888888888888887665 22356677777777777777777777777765541 11
Q ss_pred hchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 324 RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
.-......-.+..-.+.|+.+.++.+|+......++ -...|+.++..=.++|+.+.+..+|
T Consensus 1597 ------------------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1597 ------------------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred ------------------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHH
Confidence 011223344445556778888888888888775332 5668888888888889989999999
Q ss_pred HHHHHCCCCCCH--hHHHHHHHHHh
Q 042941 404 MEMKEKQLLPEP--KTDELLQDWSY 426 (481)
Q Consensus 404 ~~m~~~~~~p~~--~~~~~l~~~~~ 426 (481)
++..+.++.|.. ..|...+.+-.
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHH
Confidence 998888877765 33555555433
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=6.1e-05 Score=76.24 Aligned_cols=229 Identities=13% Similarity=0.103 Sum_probs=174.4
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC-----chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF-----NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF 211 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 211 (481)
+...|...|....+.++.+.|.+++++....+.+ -...|.++++.-. .-|.-+...++|++..+. .-....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn-~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN-AYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH-hhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 4456888888999999999999999885433211 2346777777766 778888999999999876 2234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PNVVTYNSLIKPLCK 290 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~ 290 (481)
..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.-++ -........++.-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 88999999999999999999999885 3357789999999999999999999999998876222 123344455556667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 291 ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
.|+.+.+..+|+...... +.....|+.+++.-.++|+.+.++.+|++
T Consensus 1613 ~GDaeRGRtlfEgll~ay---------------------------------PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY---------------------------------PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred cCCchhhHHHHHHHHhhC---------------------------------ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 899999999999877652 33456899999999999999999999999
Q ss_pred HHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHH
Q 042941 371 ISENGNGPDRS--SYTALIHALFLNGKLEEAHQY 402 (481)
Q Consensus 371 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 402 (481)
....++.|-.. .|...+..=-+.|+-+.+..+
T Consensus 1660 vi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99988766433 555566555566765544433
No 98
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=7.7e-05 Score=61.96 Aligned_cols=250 Identities=14% Similarity=0.102 Sum_probs=152.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
++-+.-.|++..++..-....... -++..-..+-++|...|.+..... .++.+-.|.......+..... .-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~~~~lqAvr~~a~~~~-~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGKATPLQAVRLLAEYLE-LESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccccCChHHHHHHHHHHhh-Ccchh
Confidence 445555677777776665544322 233444445667777776544332 233333333333333333332 33333
Q ss_pred HH-HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 190 RE-AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 190 ~~-a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
+. ..++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33445555555444443434444556888888888888776521 333444445556677788888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCC
Q 042941 269 MEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPT 344 (481)
Q Consensus 269 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 344 (481)
|.+. -+..|.+.|.+++++ .+.+..|.-+|++|.++ .+|+
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---------------------------------~~~T 206 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---------------------------------TPPT 206 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---------------------------------cCCC
Confidence 8774 366677777777665 34577777777777664 3788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEE-AHQYYMEMKE 408 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 408 (481)
..+.+....++...|++++|..+++........ ++.+...++.+-...|...+ ..+.+.++..
T Consensus 207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888899999999999999998886543 66676667766666666544 4456666654
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.0011 Score=65.35 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.|+..-+..+.+|...+-+.+-+++++.+.-.+-..+ .+....+.||-...+ -+...+.+..+++...+. |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs-e~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~----- 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS-ENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD----- 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc-cchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh-----
Confidence 4566666777777777777777777777654321111 113344444444333 344555555555544321 12
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCC----------------------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDV----------------------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
+...+...+-+++|..+|+..... -...+..|..+..+-. +.|...+|++-|-+..
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL-~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQL-QGGLVKDAIESYIKAD 1131 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHH-hcCchHHHHHHHHhcC
Confidence 222333444455555555432110 0012233444444444 4444444443332211
Q ss_pred hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh
Q 042941 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280 (481)
Q Consensus 201 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (481)
|+..|..+++...+.|.+++..+.+....+..-.|.. =+.++-+|++.++..+.++.+ ..|+...
T Consensus 1132 ------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~ 1196 (1666)
T KOG0985|consen 1132 ------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVAN 1196 (1666)
T ss_pred ------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchh
Confidence 3344444444444455554444444444433222222 223444444444443332221 1233333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 360 (481)
...+-.-|...|.++.|.-+|.. +..|..|...+...|+.....+..++. .+..+|..+-.+|...+.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA---NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhchhh
Confidence 33333444444444444333332 222333333333333333333333332 234455555555554444
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
+.-| +|....+-....-..-++.-|-..|-+++.+.+++.
T Consensus 1265 FrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1265 FRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4332 222222222333344556666666666666655554
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.55 E-value=0.00016 Score=70.83 Aligned_cols=183 Identities=10% Similarity=-0.027 Sum_probs=121.3
Q ss_pred cCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
++...|+..|-...+.. ++ ...|..+...|...-+...|...|+...+. |.....+.......|+...+++.
T Consensus 472 K~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHH
Confidence 33344555554443222 22 467888888888877888999999988876 65667788888899999999999
Q ss_pred HHHHHHHHhhcCCC-CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 122 AINAFYAYKRFKFA-VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 122 a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
|..+.-..-+.... .....|....-.|.+.++...+..-|+...+..|.|...|..+..+|. .+|.+..|.++|.+..
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~-~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP-ESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH-hcCceehHHHhhhhhH
Confidence 98884333222110 111223334556677778888888887766666778888888888888 8888888888887776
Q ss_pred hcCCcccHHhHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 042941 201 QRGICYDVVSFSCI--ISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 201 ~~g~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~ 236 (481)
.. .|+. +|... .-.-+..|.+.++...+.....
T Consensus 624 ~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 624 LL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 65 3322 22221 2234556777777777766543
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=0.00015 Score=72.53 Aligned_cols=237 Identities=10% Similarity=0.085 Sum_probs=164.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH-HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI-EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
....+..|+..+...+++++|.++.+...+.. |+. ..|-.+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 36788888888888899999999988766643 433 3333333466666665544333 2333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
... ...++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|+.. +++
T Consensus 92 ~~~-~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFS-QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcc-cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 333 4445545555555555542 244577888899999999999999999999987 66888999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc-
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM- 339 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~- 339 (481)
+|..++.+.... |...+++..+.++|.++...... +...+-.+ .+.+...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i-------------~~ki~~~~ 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI-------------ERKVLGHR 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH-------------HHHHHhhh
Confidence 999999888764 67778999999999999886422 22222222 2222222
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALF 391 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (481)
|..--..++-.+-..|-..++++++..++..+.+.... |.....-++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 33344556777788888899999999999999986543 5556666776665
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00044 Score=59.98 Aligned_cols=199 Identities=12% Similarity=0.123 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-----YSKARNLHKVLRLFDQMKRMGIECDRK-VYNAVIH 251 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~ 251 (481)
++--|. +.++..+|..+.+++.-. .|-......+..+ ........-|...|+..-..+..-|.. .-.++..
T Consensus 291 L~iYyL-~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYL-NQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeec-ccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 333455 677777777776655321 2222222222111 111122344555555444444332222 2234445
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhchhHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFL-DIIRTGEEVF 330 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~~ 330 (481)
++.-..++++.+-.++.+..-=..-|...+ .+.++++..|.+.+|+++|-.+....++ |..+|..++ ++|.+.+...
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 555556677777777766654333233333 3677777788888888888766554443 444554443 4556666666
Q ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 042941 331 GLLESMRKMGCQPTNDTYI-MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSY 383 (481)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 383 (481)
-.|+.|.+...+.+..+.. .+..-|.+++.+--|-+.|+.+...+ |++.-|
T Consensus 446 lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 6677776665444444433 33445667777777777777776643 444444
No 103
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=0.00013 Score=65.16 Aligned_cols=208 Identities=9% Similarity=-0.007 Sum_probs=148.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC-ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH-
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK-NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS- 189 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 189 (481)
.+...+..++|+..+..+.+.+. -+..+|+.--.++...| ++++++..++++....+.+..+|+.....+. +.+..
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchh
Confidence 34445778899999999887542 24456666666666666 5789999998877667778788887665555 56653
Q ss_pred -HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCh----HH
Q 042941 190 -REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG---RLV----KD 261 (481)
Q Consensus 190 -~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~ 261 (481)
+++..+++.+.+...+ +..+|+....++.+.|+++++++.++++.+.+ +.+...|+.....+.+. |.. +.
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 6788888888877554 77888888888889999999999999999986 45777887776666554 222 45
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKA----RKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
......++....+. |...|+.+...+... +...+|...+.+..+.++ .+...+..|++.|+.
T Consensus 202 el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 67777677766554 778888888777763 344567777777665432 255566666666654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=1.3e-05 Score=69.37 Aligned_cols=188 Identities=14% Similarity=-0.037 Sum_probs=123.3
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH---h
Q 042941 100 LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK---S 174 (481)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 174 (481)
..+...+..+...+...|+++.|...|+++...... |. ..++..+..++...|++++|...++.+....|.+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 344777888888888999999999999988765321 11 245667788888899999999999886554443333 3
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 175 FNIILNGWCNII--------GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 175 ~~~l~~~~~~~~--------~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
+..+...+. .. |++++|.+.|+.+...... +...+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNY-NQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHH-HhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 444555555 33 6677888888887766322 1222222111100 000 000 011
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVA--PNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..+...+.+.|++++|...++...+.... .....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556788899999999999998876321 23467888889999999999999998888765
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=2.5e-05 Score=67.56 Aligned_cols=190 Identities=12% Similarity=-0.011 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC-H
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG-I 138 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~ 138 (481)
......+-.....+...|+++.|...|+++... .|+ +....++..+...+...|++++|+..++.+.+.... |. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 346778888888999999999999999998875 222 122357778888999999999999999999875422 11 1
Q ss_pred HhHHHHHHHHHcC--------CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHh
Q 042941 139 EDFQGLLSALCRY--------KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVS 210 (481)
Q Consensus 139 ~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 210 (481)
.++..+..++... |+.+.|.+.|+.+....|.+...+..+..... ... .. . ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~-----~~~------~~-------~-~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY-----LRN------RL-------A-GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH-----HHH------HH-------H-HH
Confidence 2344455555544 67888888888865544444333332221111 000 00 0 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGI--ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
...+...+.+.|++.+|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678889999999999999887531 223567888999999999999999998888765
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=8e-06 Score=74.93 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=153.3
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
.-+.+.|++.+|.-.|+..... ||....+|..|....+..++-..|+..+++..+.+ +-+......|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 3456788888888888888877 66668888888888888888888888888888754 225566777777888888
Q ss_pred ChhhHHHHHhhc-cCCCC--------CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCcccHHhHHHHHHHHHhcC
Q 042941 153 NVQDAEHLMFCN-KDVFP--------FNTKSFNIILNGWCNIIGSSREAERVWMEMSQ-RGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 153 ~~~~a~~~~~~~-~~~~~--------~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.-..|+..++.- ....+ ++...-+. ..+. ....+....++|-++.. .+..+|......|.-.|.-.|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~-~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFL-DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCC-CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888888888652 21100 00000000 1122 22333444555554443 444467777777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
++++|...|+..+... +-|...||-|...++...+.++|+..|++.++..+. =++....|.-+|...|.+++|...|-
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 8999999998888764 456778888888888888889999999888886443 23344445667788888888888776
Q ss_pred HHH
Q 042941 303 EML 305 (481)
Q Consensus 303 ~m~ 305 (481)
..+
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 543
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=6.4e-05 Score=71.13 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=119.6
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..+...+...|-...|..+|+++ ..|.-++.+|+ ..|+..+|..+..+..+. +||+..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~-~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYL-LLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHH-HhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 34555666666666666666532 34555566666 666666666666555553 45666666666655555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+.- -..+|-..-.+..+.+++..|...|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 5566666665543322 1111111222356666666666655544321 3445555555555566666666555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 042941 302 DEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRS 381 (481)
Q Consensus 302 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 381 (481)
..-..- . +-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+..
T Consensus 543 ~rcvtL--~-------------------------------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~ 588 (777)
T KOG1128|consen 543 HRCVTL--E-------------------------------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQ 588 (777)
T ss_pred HHHhhc--C-------------------------------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCe
Confidence 554432 1 2234566667777777777777777777666655 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+|...+-....-|.+++|++.+.++.+
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHH
Confidence 566666666667777777777666554
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=3.5e-05 Score=63.92 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=73.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSAL 148 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 148 (481)
...-..+.-.|+-+....+....... ++.+....+..+...++.|++..|+..+++..... ++|..+|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA----YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc----CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHH
Confidence 33334444444444444444443222 11123344445555555555555555555555433 34555555555555
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVL 228 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 228 (481)
.+.|+++.|..-|.+.....+-+....|-+...+. -.|+.+.|..++......+.. |...-..+..+....|++++|.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~-L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL-LRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH-HcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHH
Confidence 55555555555554443333344444444444444 455555555555554444222 3333344444445555555555
Q ss_pred HHHH
Q 042941 229 RLFD 232 (481)
Q Consensus 229 ~~~~ 232 (481)
++..
T Consensus 223 ~i~~ 226 (257)
T COG5010 223 DIAV 226 (257)
T ss_pred hhcc
Confidence 5443
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.52 E-value=0.00049 Score=65.46 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
.+.+......|.+|+.+++.+.... .-..-|..+.+-|...|+++.|+++|.+ ...++..|.+|. +.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e--------~~~~~dai~my~-k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE--------ADLFKDAIDMYG-KAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh--------cchhHHHHHHHh-cccc
Confidence 3444555667777777777766532 2233466677888888888888888843 234667778888 8888
Q ss_pred HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 189 SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 189 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
|+.|.++-.+.. |....+..|-+-..-+-..|++.+|.++|-.+. .|+. .|.+|-+.|..+...++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888887765543 334455566665666667777777777664432 3332 45666666766666665554
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 269 MEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 269 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
-.-. .-..|...+..-|-..|+...|...|-+
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 3211 1122333444455555666666655543
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=2e-05 Score=72.37 Aligned_cols=245 Identities=10% Similarity=0.043 Sum_probs=175.8
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.-.|.-.|+..+.+.+ -+..+|-.|.......++-..|+..+++..+. |+.+..+...|.-.|...|.-..|
T Consensus 299 G~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred CCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777887775552 47899999999999999999999999999987 666788999999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHh--------HHHHHHHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 123 INAFYAYKRFKFAVGIED--------FQGLLSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
+..++.......+ -... +.. -..+.....+....++|-.+.. +...|+.+...|.-.|. -.|++++|
T Consensus 373 l~~L~~Wi~~~p~-y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-YVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc-chhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHH
Confidence 9999888654311 0000 000 0011112223344455544322 22367778888887787 89999999
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
.+.|+......+. |...||-|...++...+.++|+..|++.++. .|+ +.+.-.|.-+|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999887444 7789999999999999999999999999986 444 34555577789999999999999876653
Q ss_pred c---------CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 272 K---------GVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 272 ~---------~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
. +..++...|..|=.++.-.++.+.+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 2 111233456666555655666554433
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00033 Score=57.92 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHHHhh---cC-CCCCHHh-HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 117 HDVGRAINAFYAYKR---FK-FAVGIED-FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
.+.++..+++..+.. .| ..++..+ |..++-+....|+.+.|..+++.+...+|.+..+ ..+=..+....|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV-~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRV-GKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhH-HHHHHHHHHHhhchhh
Confidence 456777777666652 33 4556543 5667788888899999999998887777433333 2222233326799999
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
|+++|+.+.+..+. |..++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999887633 6666666666666678877888888888776 567999999999999999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 042941 272 KGVAPNVVTYNSLIKPLCKA---RKLDEARQAFDEMLQRG 308 (481)
Q Consensus 272 ~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 308 (481)
..+. +...+..+...+.-. .+.+-+.++|.+..+..
T Consensus 183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 5322 344444455444433 35677888888877753
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=0.00022 Score=67.71 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=87.2
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
+.+..|+.+++.+..+. .-..-|..+..-|+..|+++.|.++|-+. ..++..|..|.+.|+|+.|
T Consensus 746 kew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccccHHHH
Confidence 45666666666664332 22334666667777777777777777543 2344566677777777777
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
.++-++... .......|..-..-+-+.|++.+|++++-.+.. |+ ..|.+|- +.|..+..+++..+-...
T Consensus 811 ~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~---p~-----~aiqmyd-k~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE---PD-----KAIQMYD-KHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---ch-----HHHHHHH-hhCcchHHHHHHHHhChh
Confidence 776655432 233344455555555666777777666643321 22 2345555 666666666655443211
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
. -..|...+..-+-..|+...|..-|
T Consensus 880 ~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 880 H---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred h---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 1 1123333444445555555555444
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=0.00011 Score=61.09 Aligned_cols=159 Identities=12% Similarity=0.136 Sum_probs=109.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457777877776544422211 11 0122356677777778877776554 788888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--hhHHHHHHHHH
Q 042941 295 DEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKK-FSRWRQ--FGNVFKVWNEI 371 (481)
Q Consensus 295 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~ 371 (481)
++|...|++..+.. +.+...+..+..+ +...|+ .++|.+++++.
T Consensus 90 ~~A~~a~~~Al~l~---------------------------------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 90 DNALLAYRQALQLR---------------------------------GENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred HHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 99999988887753 2345566666665 356666 48899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 372 SENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
.+.+.. +...+..+...+.+.|++++|+..|+++.+. ..|+...+.++
T Consensus 137 l~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 137 LALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH
Confidence 886543 6677888888888999999999999988875 34555444443
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.0012 Score=69.49 Aligned_cols=325 Identities=11% Similarity=0.009 Sum_probs=180.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCC-------CCch--HhHHHHHHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF-------PFNT--KSFNIILNGW 182 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~--~~~~~l~~~~ 182 (481)
.....|+++.+..++..+.......++.........+...|+++++..++....... ++.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655321111222233344555667789999988887642211 1111 1122223344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMGI---ECD--RKVYNAVIHAL 253 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~ 253 (481)
. ..|++++|...++.....-...+ ....+.+...+...|++++|...+.+.....- .+. ..++..+...+
T Consensus 463 ~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 I-NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred H-hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5 78999999999998765311112 13445566677889999999999988764311 111 23445566778
Q ss_pred HcCCChHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCH--HHHHHHHHH
Q 042941 254 AKGRLVKDAISLMKSMEEK----GVA--P-NVVTYNSLIKPLCKARKLDEARQAFDEMLQRG--ISPTI--RTYHAFLDI 322 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~--~~~~~li~~ 322 (481)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+.. ..+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 221 1 12234445556677899999999998865431 11222 112222222
Q ss_pred Hhch---hHHHHHHHHHHHc----CCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 042941 323 IRTG---EEVFGLLESMRKM----GCQPTNDT--YIMLIKKFSRWRQFGNVFKVWNEISENGNGPD---RSSYTALIHAL 390 (481)
Q Consensus 323 ~~~~---~~~~~~~~~~~~~----~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 390 (481)
.... ..+...+...... +....... ....+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 2222 3334444444321 11111101 11122445568899999999877654221111 11234567788
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCCH-hHHHHHHHHHhhhhHHHHHHHH
Q 042941 391 FLNGKLEEAHQYYMEMKEK----QLLPEP-KTDELLQDWSYNKQFVERQIAS 437 (481)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~~~~~ 437 (481)
...|++++|...+.+.... |..++. .+...+...+...|..+++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~ 753 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV 753 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999987654 332222 2233333444555555444433
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=4.2e-05 Score=63.46 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..+-..+.-.|+-+....+........+.|....+..+.... +.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445566666777777777776655555566667777777777 8888888888888877653 34778888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
|++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|+++.|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888888877763 345667777888888888888888888888776544 5666666777777788888888776
Q ss_pred HHHH
Q 042941 302 DEML 305 (481)
Q Consensus 302 ~~m~ 305 (481)
.+-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=2.8e-05 Score=73.47 Aligned_cols=223 Identities=9% Similarity=-0.002 Sum_probs=171.8
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh
Q 042941 61 YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED 140 (481)
Q Consensus 61 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (481)
++|--..-..+...+...|-...|..+|+++. .|..+|..|+..|+.++|..+.....+ -+|++..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchh
Confidence 33333444556777888999999999998753 566788899999999999999888776 3688999
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
|..+.+.....--+++|.++++....+ .-..+..... ..++++++.+.|+.-...+. .-..+|-.+.-+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~-~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLIL-SNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccc-cchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHH
Confidence 999999888888889999988764332 1112222233 57899999999987666532 255678888888889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.+++..|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|-.-+....+.|.+++|.+.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 999999999998887753 445678999999999999999999999999988743 556666667777899999999999
Q ss_pred HHHHHHC
Q 042941 301 FDEMLQR 307 (481)
Q Consensus 301 ~~~m~~~ 307 (481)
+.++...
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 9987543
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=7.6e-05 Score=61.94 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=64.5
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH-HhcCC--HHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY-SKARN--LHKVL 228 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~--~~~a~ 228 (481)
++.+++...+.......|.+...|..+...|. ..|++++|...|+........ +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444433334555566666666666 566666666666665555332 444444444442 44444 36666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 229 RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+++++..+.+ +-+..++..+...+...|++++|...|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666553 335555555666666666666666666666554
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.0016 Score=59.79 Aligned_cols=363 Identities=13% Similarity=0.050 Sum_probs=184.8
Q ss_pred HHhcCCCC-CHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCC
Q 042941 22 IEECGIKV-SSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHS-TREYHTMIAILGKVRKFDTAWALIDEMRGGETG 97 (481)
Q Consensus 22 ~~~~~~~~-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 97 (481)
...-.+.| +...|..-..++ .+++++|++--..- ..+.|+ ...|+....++.-.|++++|+.-|.+=++.
T Consensus 26 t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~---~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--- 99 (539)
T KOG0548|consen 26 TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT---RRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--- 99 (539)
T ss_pred HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH---HhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc---
Confidence 33344444 334444433333 25566665544433 334465 678999999999999999999999987776
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHH---HHHHHHhhc---CCCCCHHhHHHHHHHHH----------cCCChhhHHHHH
Q 042941 98 PSLVTKQTLLILIRRYCAVHDVGRAI---NAFYAYKRF---KFAVGIEDFQGLLSALC----------RYKNVQDAEHLM 161 (481)
Q Consensus 98 p~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~ 161 (481)
++.+...+.-+..++.......... .++..+... .......+|..++..+- .-..+..+.-.+
T Consensus 100 -d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l 178 (539)
T KOG0548|consen 100 -DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL 178 (539)
T ss_pred -CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH
Confidence 6666777777777762221110000 011111100 00001112222322221 111111222111
Q ss_pred hhc-------------cCCCCC------------c----------hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 042941 162 FCN-------------KDVFPF------------N----------TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICY 206 (481)
Q Consensus 162 ~~~-------------~~~~~~------------~----------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~ 206 (481)
... .....| | ..-...+.++.. +..++..|++-+....... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay-kkk~f~~a~q~y~~a~el~--~ 255 (539)
T KOG0548|consen 179 KGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY-KKKDFETAIQHYAKALELA--T 255 (539)
T ss_pred hcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH-HhhhHHHHHHHHHHHHhHh--h
Confidence 100 001111 0 012345666666 7888999999998887764 3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNA-------VIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
++.-++....+|...|.+......-....+.|-. ...-|+. +..+|.+.++++.+...|.+.......|+..
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence 5555667777888999888888777776665521 2233333 3345666778899999998876654444322
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR--TYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKK 354 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (481)
+ +....+++........-.+ |... .... -..+.+. ..+...+.++++.. +-|...|....-+
T Consensus 335 s---------~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 335 S---------KLKEAEKALKEAERKAYIN--PEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred H---------HHHHHHHHHHHHHHHHhhC--hhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 2 1122233333322222111 1110 0000 0011111 22233344444333 4455666666667
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
|.+.|.+..|+.=.+...+... +....|.-=..++....++++|.+.|.+..+.
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777666666555421 12333444444455555666677666666553
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=2.9e-05 Score=74.30 Aligned_cols=283 Identities=10% Similarity=0.105 Sum_probs=157.3
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC---------C-CCC
Q 042941 103 KQTLLILIR--RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD---------V-FPF 170 (481)
Q Consensus 103 ~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~-~~~ 170 (481)
..|-..++. .|...|+.+.|.+-++-+. +...|..+.++|.+..+++-|.-.+-.|.. . ..+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 444445543 4566788888877776554 345678888888888887777666644321 0 111
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+ .. ..-...++...|-+++|+.+|++-++. ..|=+.|-..|.+++|.++-+.-.+..+ ..||-...
T Consensus 800 ~-e~-eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 800 E-ED-EAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred c-ch-hhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 1 11 111112222678888888888877653 3344456678888888887665333222 34566666
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhchhHH
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRT-YHAFLDIIRTGEEV 329 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~ 329 (481)
.-+-..++.+.|++.|++.... --..+..|. .++.....+.+.+.+ |.... |...+. ..|+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~d----~~L~~WWgqYlE---S~Gem 928 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKRD----ESLYSWWGQYLE---SVGEM 928 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhccc----hHHHHHHHHHHh---cccch
Confidence 6666777888888877754221 111111110 112222222222211 11111 111111 11222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 330 FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
...+..... ..-|-++++..|-+|+.++|-++-++-- |......+.+.|-..|++.+|..+|.+.+
T Consensus 929 daAl~~Y~~------A~D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-- 994 (1416)
T KOG3617|consen 929 DAALSFYSS------AKDYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ-- 994 (1416)
T ss_pred HHHHHHHHH------hhhhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH--
Confidence 111111111 1234567777888899999988866532 55555568889999999999999998875
Q ss_pred CCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCc
Q 042941 410 QLLPEPKTDELLQDWSYNKQFVERQIASLKAHQP 443 (481)
Q Consensus 410 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (481)
++...++.+...+..++......-..|
T Consensus 995 -------afsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 995 -------AFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred -------HHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 455566666666666666655554444
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.003 Score=62.42 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=129.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
+...|...|-+..+. |+.=...|..|...|+..-+...|...|+...+.+ .-+......+.+.|++..+++.|..
T Consensus 473 ~~~~al~ali~alrl----d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 473 NSALALHALIRALRL----DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 356666666665554 33336788888888888888999999999988765 3366778888999999999999988
Q ss_pred HHhhccCCCCCch--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 160 LMFCNKDVFPFNT--KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
+.-...+..+... ..|-...-.|. +.++...+..-|+...+..++ |...|..+..+|..+|.+..|.++|.+....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 8544322222122 22333344466 788888888888887776544 7778889999999999999999999888765
Q ss_pred CCCCCHHHHHH--HHHHHHcCCChHHHHHHHHHHHH
Q 042941 238 GIECDRKVYNA--VIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 238 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
.|+ .+|.. ....-+..|.+.+|+..+.....
T Consensus 626 --rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 343 23332 22335678889999888887654
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0018 Score=59.53 Aligned_cols=374 Identities=9% Similarity=0.069 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHhh-cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 28 KVSSELVSEVLSWVR-NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
+-+...+..++.... +..+++...++.+.... +-+...|..-|..-.+..+++..+.+|.+.+..-. + .+.|
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--n---lDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--N---LDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--h---HhHH
Confidence 347778888888884 45688888999886554 34678899999999999999999999999877522 2 5566
Q ss_pred HHHHHHHHhc-CCHH----HHHHHHHHHh-hcCCCC-CHHhHHHHHHHH---------HcCCChhhHHHHHhhccCC-CC
Q 042941 107 LILIRRYCAV-HDVG----RAINAFYAYK-RFKFAV-GIEDFQGLLSAL---------CRYKNVQDAEHLMFCNKDV-FP 169 (481)
Q Consensus 107 ~~li~~~~~~-~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~ll~~~---------~~~~~~~~a~~~~~~~~~~-~~ 169 (481)
..-+..-.+. |+.. .-.+.|+-.. +.|..+ +-..|+..+..+ ....+++...+++.++... +.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 6555433332 2222 2233344333 445443 234566555443 2333556667777764321 11
Q ss_pred CchHhHHHH------HHH-----H-HHhcCCHHHHHHHHHHHHhc--CCcccHHh---------------HHHHHHH---
Q 042941 170 FNTKSFNII------LNG-----W-CNIIGSSREAERVWMEMSQR--GICYDVVS---------------FSCIISC--- 217 (481)
Q Consensus 170 ~~~~~~~~l------~~~-----~-~~~~~~~~~a~~~~~~~~~~--g~~~~~~~---------------~~~ll~~--- 217 (481)
.-...|+.. |+- + ..+...+..|.++++++... |+.....+ |-.+|.-
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEks 249 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKS 249 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 111122211 110 0 11334556666766665432 22111111 2111111
Q ss_pred ----------------------------------------------HHhcCC-------HHHHHHHHHHHHHcCCCCCHH
Q 042941 218 ----------------------------------------------YSKARN-------LHKVLRLFDQMKRMGIECDRK 244 (481)
Q Consensus 218 ----------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 244 (481)
+...|+ -+++..+++.....-..-+..
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 122222222222211111222
Q ss_pred HHHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 042941 245 VYNAVIHALAKG---RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP-TIRTYHAFL 320 (481)
Q Consensus 245 ~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li 320 (481)
+|..+...--.. ...+....+++++...-..--.-+|...++.-.+...++.|..+|.+..+.+..+ ++...++++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 222222111111 1245555666666544222234567788888888889999999999999988777 788899999
Q ss_pred HHHhchhHH--HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCH
Q 042941 321 DIIRTGEEV--FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR--SSYTALIHALFLNGKL 396 (481)
Q Consensus 321 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 396 (481)
.-+|..+.. .++|+.=.+. ...++.--...+.-+...++-..+..+|++....++.|+. .+|..++.-=..-|+.
T Consensus 410 Ey~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 998887654 6777654332 1223334456777788889999999999999988666554 5899999988999999
Q ss_pred HHHHHHHHHHHHC
Q 042941 397 EEAHQYYMEMKEK 409 (481)
Q Consensus 397 ~~A~~~~~~m~~~ 409 (481)
..+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887654
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=3.1e-05 Score=60.72 Aligned_cols=91 Identities=10% Similarity=-0.081 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
....+...|++++|...|+...... +.+...+..+..++...|++++|...|.+.....|.+...+..+..++. ..|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~-~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK-MMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCC
Confidence 3344444444444444444444432 1233444444444444444444444444433333344444444444444 4444
Q ss_pred HHHHHHHHHHHHh
Q 042941 189 SREAERVWMEMSQ 201 (481)
Q Consensus 189 ~~~a~~~~~~~~~ 201 (481)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00067 Score=56.58 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG 326 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 326 (481)
..-...|+..|++++|++...... +......=+..+.+..+++-|...+++|.+-. +..|.+.|.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~----- 177 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQ----- 177 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHH-----
Confidence 333445667777777776665521 22333333445556666777777777766531 2222222221
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+.+......+++..|.-+|++|.+. ..|++.+.+....++...|++++|..++++.
T Consensus 178 -----------------------awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 178 -----------------------AWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred -----------------------HHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 2233334456789999999999874 5689999999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHhhhhH---HHHHHHHHhhcCccCC
Q 042941 407 KEKQLLPEPKTDELLQDWSYNKQF---VERQIASLKAHQPQSG 446 (481)
Q Consensus 407 ~~~~~~p~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~ 446 (481)
.++.......-.|.+...+..... .++.+..++..+|..+
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 987544333333444444433333 5577777777777654
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.34 E-value=5.1e-05 Score=59.46 Aligned_cols=95 Identities=9% Similarity=-0.068 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+......+. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445666677777777777777777664 446667777777777777777777777777776443 66667777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 042941 291 ARKLDEARQAFDEMLQR 307 (481)
Q Consensus 291 ~g~~~~a~~~~~~m~~~ 307 (481)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777664
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.0008 Score=61.14 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=77.3
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhcCCHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKARNLHK 226 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~ 226 (481)
+...|+++.|+..+..+....|.|+.........+. +.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 334456666666666655545555555555555555 666666666666666554 333 2233344556666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
|..+++...... +-|+..|..|..+|...|+..++..-..+ +|...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 666666655543 45566666666666666665555443332 23445666666666665554
Q ss_pred C
Q 042941 307 R 307 (481)
Q Consensus 307 ~ 307 (481)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00051 Score=68.01 Aligned_cols=146 Identities=9% Similarity=-0.005 Sum_probs=103.7
Q ss_pred CCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 134 FAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 134 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
...++..+-.|.....+.|.+++|..+++.+....|.+......+...+. +.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34457777777788888888888888887776666666666677777777 788888888888887776443 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS 283 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (481)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.- .|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 6777778888888888888887743 3456777777788888888888888888776652 233444443
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.6e-06 Score=49.17 Aligned_cols=33 Identities=36% Similarity=0.664 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE 414 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 414 (481)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.0056 Score=60.78 Aligned_cols=322 Identities=13% Similarity=0.098 Sum_probs=198.3
Q ss_pred HHHHhcCCChhHHHHHHHhcCC--CCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHhccCC
Q 042941 6 DILREFSHKRSEMRNKIEECGI--KVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSG-YAHSTREYHTMIAILGKVRK 80 (481)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 80 (481)
.+|.+...-.+++..+..+-++ .-+|+.++-...++ ..-+.+-+++++.+.-+.+ +.-+...-|.+|-.-.+..
T Consensus 957 ~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad- 1035 (1666)
T KOG0985|consen 957 KVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD- 1035 (1666)
T ss_pred HHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-
Confidence 5666666666777777765443 23566666666665 3566777888888874433 3334444444444333332
Q ss_pred hhHHHHHHHHHhcCCCCCCcc----c-----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 81 FDTAWALIDEMRGGETGPSLV----T-----------------KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~----~-----------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
.....+..+++..-. .|+.. + ..+...||.- -++.+.|.+.-++. -.+.
T Consensus 1036 ~trVm~YI~rLdnyD-a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~ 1105 (1666)
T KOG0985|consen 1036 RTRVMEYINRLDNYD-APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERC------NEPA 1105 (1666)
T ss_pred hHHHHHHHHHhccCC-chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhh------CChH
Confidence 233444444443220 11100 0 2222222221 13333333333221 2456
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
.|..+..+-.+.|.+.+|++-|-+. .|+..|.-++.... +.|.+++-.+.+....+..-.|... +.|+-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~-~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVAS-RTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence 7888888888999999888877543 36778999999988 9999999999998777776556554 56888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
+.++..+..+++. -|+......+.+-|...|.++.|.-+|.. +..|..|...++..|++..|.+
T Consensus 1178 kt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999887766653 47888888888999999999988877754 4457778888888888888876
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 300 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
.-++. .+..+|.-+--+|...++.. +.+|...++-....-..-++..|-..|.+++.+.+++.
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~EFr--lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEEFR--LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhhhh--HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 65543 35567777666666554431 11222222223334445555556666666655555543
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.0029 Score=61.29 Aligned_cols=321 Identities=10% Similarity=0.078 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHh----hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC---------C
Q 042941 30 SSELVSEVLSWV----RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE---------T 96 (481)
Q Consensus 30 ~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~ 96 (481)
++.+-..+|+.- -++.|.|++-.+.+ -+...|..+.+.|.+..+.+-|.-.+-.|.... -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 455555555542 37778887777766 256689999999999988888877776664421 0
Q ss_pred CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHH
Q 042941 97 GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFN 176 (481)
Q Consensus 97 ~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 176 (481)
.|+ ..=..+.-.....|.+++|+.+|.+-.+. ..|=..|...|.+++|.++-+.-.. +. =..+|.
T Consensus 798 ~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy 862 (1416)
T KOG3617|consen 798 NGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYY 862 (1416)
T ss_pred CCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHH
Confidence 111 11112222345678889999999887653 3455677888999999988765322 11 123444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------hcC---------CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 177 IILNGWCNIIGSSREAERVWMEMS----------QRG---------ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~----------~~g---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
....-+- ..++.+.|++.|++.. ... -..|...|..-...+-..|+.+.|+.+|.....
T Consensus 863 ~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 863 NYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 4444444 6778888888776431 110 011333344444444455666666666654432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042941 238 GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYH 317 (481)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 317 (481)
|-++++..|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|...|-.... |.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 334555666677777777665543 2556666788888888999999888876532 33
Q ss_pred HHHHHHhchh---------------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH--------HH-
Q 042941 318 AFLDIIRTGE---------------EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEI--------SE- 373 (481)
Q Consensus 318 ~li~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~- 373 (481)
..|+.|...+ +....-+...+.|.. +...+..|-++|.+.+|+++--+- ..
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 3444433332 222233333333321 223445678888888887653221 11
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042941 374 -NGNGPDRSSYTALIHALFLNGKLEEAHQY 402 (481)
Q Consensus 374 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (481)
.....|+...+.-..-|+...++++|..+
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22234555555555555555555555443
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.0005 Score=68.04 Aligned_cols=179 Identities=8% Similarity=0.096 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..++..|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|+..+++.....|.+....+.+..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999999864 224567778899999999999999999998877777888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. +.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.. .+....|+.++. +...-
T Consensus 165 ~-~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~ 235 (694)
T PRK15179 165 D-EIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNAD 235 (694)
T ss_pred H-HhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHH
Confidence 8 999999999999999985432 57788899999999999999999999998763 455566665553 23334
Q ss_pred HHHHHHHHHc----CCCCChhhHHHHHHHHHhc
Q 042941 263 ISLMKSMEEK----GVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 263 ~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 291 (481)
...++++.-. |..........+|..|.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 236 LAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4555555433 2333444556666666554
No 131
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=0.0025 Score=55.28 Aligned_cols=192 Identities=11% Similarity=0.069 Sum_probs=135.8
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
++...+|+.-|.....-. +.+-.++-.-...|...|+..-|+.=+..+++. +||... +-..-...+.++|.++.
T Consensus 51 ~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~--ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA--ARIQRGVVLLKQGELEQ 124 (504)
T ss_pred hhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH--HHHHhchhhhhcccHHH
Confidence 356667777777665322 233445555667888899999999999998876 677322 22233446788999999
Q ss_pred HHHHHHHHhhcCCCCC--HHh------------HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 122 AINAFYAYKRFKFAVG--IED------------FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~--~~~------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
|..-|+..+....... ... ....+..+...|+...|+.....+.+..+.|...+..-..+|. ..|
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~ 203 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEG 203 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcC
Confidence 9999999987643111 111 1223445666788888888888888888888888888889998 889
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
++..|+.=++...+..-. ++.++-.+-..+...|+.+.++...++..+. .||.
T Consensus 204 e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdH 256 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDH 256 (504)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccch
Confidence 999888877776665433 4555556667788888888888888888875 3554
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=2.5e-06 Score=47.95 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0012 Score=54.79 Aligned_cols=189 Identities=11% Similarity=-0.048 Sum_probs=107.7
Q ss_pred CChhHHHHHHHHHhcC---C-CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh
Q 042941 79 RKFDTAWALIDEMRGG---E-TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV 154 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~---~-~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 154 (481)
.+.++..+++.++... | ..|+. ...|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~--w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEI--WTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3445555555555331 2 23331 3345555556666677777777776665432 22222222222233445667
Q ss_pred hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 155 QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQM 234 (481)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 234 (481)
++|+++++.+....|.|..++-.-+...- ..|+..+|++-+....+. +..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777765555666666666555555 566666676666665554 3347777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcC
Q 042941 235 KRMGIECDRKVYNAVIHALAKGR---LVKDAISLMKSMEEKG 273 (481)
Q Consensus 235 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~ 273 (481)
.-.. |.++..+..+...+.-.| +.+.+.++|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 6653 334444444444433332 4556777777777653
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=6.8e-05 Score=58.37 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
..+...+...|++++|...++.....+ +.+...+..+..++...|++++|...++......+.+...+..+...+. ..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL-AL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-Hc
Confidence 333344444444444444444444332 1233334444444444444444444444433323333344444444444 44
Q ss_pred CCHHHHHHHHHHHHh
Q 042941 187 GSSREAERVWMEMSQ 201 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~ 201 (481)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=4.1e-06 Score=47.44 Aligned_cols=33 Identities=58% Similarity=0.992 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPT 312 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (481)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=5.4e-05 Score=69.00 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=78.5
Q ss_pred CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH
Q 042941 98 PSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177 (481)
Q Consensus 98 p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (481)
|+..+......+++.+...++++.|+.+++++.+.. |+. ...+++.+...++-.+|.+++++.....|.+......
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~ 239 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNL 239 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344445555556666666666666666666666543 332 2345555555666666666666544444455555665
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
....+. ..++++.|+.+.+++... .|+ -.+|..|..+|...|+++.|+..++.+.
T Consensus 240 Qa~fLl-~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 QAEFLL-SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666 666677777777666665 333 3466667777777777777776666654
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=0.00017 Score=56.14 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
.+...+. ..|++++|...++.+...+.. +...+..+...+.+.|++++|...++...+.+ +.+...+..+..++...
T Consensus 22 ~~a~~~~-~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 22 ALAYNLY-QQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHH-HcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 3333344 444444444444444443211 33344444444444444444444444444432 22334444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 042941 257 RLVKDAISLMKSMEE 271 (481)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (481)
|+++.|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444444
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=5e-06 Score=46.70 Aligned_cols=33 Identities=45% Similarity=0.700 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 311 (481)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555544
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.00069 Score=67.98 Aligned_cols=215 Identities=10% Similarity=-0.027 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHH------------------
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINA------------------ 125 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~------------------ 125 (481)
+...+..++..+...+++++|.++.+...+. .|+. ...|-.+...+.+.++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~--i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKS--ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcc--eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHH
Confidence 4666777777777777777777777755554 3332 22232222244444444444333
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc
Q 042941 126 FYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC 205 (481)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~ 205 (481)
+..+... .-+...+-.+..+|-+.|+.+++..+++++..-.+.|..+.|-+...|. .. ++++|.+++.+....-+
T Consensus 106 ~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a-e~-dL~KA~~m~~KAV~~~i- 180 (906)
T PRK14720 106 CDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE-EE-DKEKAITYLKKAIYRFI- 180 (906)
T ss_pred HHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHHHH-
Confidence 2222221 1122456667777778888888888888865555777888888888888 66 88888888777665411
Q ss_pred ccHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 206 YDVVSFSCIISC-----YSKARNLHKVLRLFDQMKRM-GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 206 ~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
+..-|+.+... .....+.+.-..+.+.+... |..--..++-.+-..|-..++++++..+++.+.+...+ |..
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~ 258 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNK 258 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chh
Confidence 11111211111 11222334444444444432 32333455566667788888999999999999887655 666
Q ss_pred hHHHHHHHHH
Q 042941 280 TYNSLIKPLC 289 (481)
Q Consensus 280 ~~~~li~~~~ 289 (481)
...-++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 6777777776
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00013 Score=66.62 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=102.1
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIIS 216 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 216 (481)
+......|+..+...++++.|..+|+++.... |+ ....++..+. ..++-.+|.+++.+...... .+...+..-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~-pe--v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD-PE--VAVLLARVYL-LMNEEVEAIRLLNEALKENP-QDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC-Cc--HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34445567778888889999999999977653 33 4556777777 78888899999998886533 26667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+.+.++++.|+++.+++.+.. +-+-.+|..|..+|...|+++.|+..++.+.-.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8899999999999999998873 445568999999999999999999999888643
No 141
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.06 E-value=9.5e-05 Score=52.86 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGI-ECDRKVYNAVIHALAKGR--------LVKDAISLMKSMEEKGVAPNVVTYNSLI 285 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 285 (481)
|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444566666666666666665 556666666665555432 2234455666666666666666666666
Q ss_pred HHHH
Q 042941 286 KPLC 289 (481)
Q Consensus 286 ~~~~ 289 (481)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5554
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.05 E-value=0.0042 Score=56.62 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=114.9
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII 215 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 215 (481)
|+...+...+.+......-..+..++..... -.-...-|..-+..| ..|+++.|+..++.+...-. -|..-+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~aa~YG~A~~~~--~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK-RGGLAAQYGRALQTY--LAGQYDEALKLLQPLIAAQP-DNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC-ccchHHHHHHHHHHH--HhcccchHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4555555555555444444444444333222 112333455555544 58999999999999887622 2455556667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
..+...++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|..+++........ |...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 8889999999999999998886 455 555667788899999999999999988877544 888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 042941 295 DEARQAFDEMLQ 306 (481)
Q Consensus 295 ~~a~~~~~~m~~ 306 (481)
.++..-..+...
T Consensus 425 ~~a~~A~AE~~~ 436 (484)
T COG4783 425 AEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHHH
Confidence 888887777644
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.04 E-value=0.016 Score=56.84 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=84.4
Q ss_pred HHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--hccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 042941 34 VSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL--GKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILI 110 (481)
Q Consensus 34 ~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li 110 (481)
+.-+...+ ++....|++....+.++++ |.. |..++.++ .+.|+.++|..+++.....+.. | ..+...+-
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~P---n~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D---~~tLq~l~ 84 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHP---NAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-D---DLTLQFLQ 84 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCC---CcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-c---hHHHHHHH
Confidence 33344444 3566777777777777663 322 33333333 4677777888777777655333 3 66777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
..|...++.++|..+|++.... .|+..-...+..+|.+.+++.+-.+.--++...+|.+...+=.+++.+.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 7777778888888888777653 3566666667777777776665443333333334445555555555444
No 144
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.012 Score=54.40 Aligned_cols=363 Identities=10% Similarity=0.085 Sum_probs=205.5
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
+-|..+|+.+|.-+..+ .++++.+.++++... -+.++..|..-|+.-.+.++++.++.+|.+.+..-+ +...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHH
Confidence 45899999999998777 899999999999875 455688999999999999999999999999886543 45555
Q ss_pred HHHHHHHH-cCCChhhHH----HHHhhccC--C-CCCchHhHHHHHHHH---------HHhcCCHHHHHHHHHHHHhcCC
Q 042941 142 QGLLSALC-RYKNVQDAE----HLMFCNKD--V-FPFNTKSFNIILNGW---------CNIIGSSREAERVWMEMSQRGI 204 (481)
Q Consensus 142 ~~ll~~~~-~~~~~~~a~----~~~~~~~~--~-~~~~~~~~~~l~~~~---------~~~~~~~~~a~~~~~~~~~~g~ 204 (481)
...+.--. ..++...+. +.|+-... + ...+...|+..+..+ . ...+.+...++|.++...-+
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e-e~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE-ENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH-HHHHHHHHHHHHHHHhcCcc
Confidence 55544222 223333322 22322111 2 223444566555432 2 33456667777777776422
Q ss_pred cccH-HhHH------HHHHH-------HHhcCCHHHHHHHHHHHHH--cCCCCCHH---------------HHHHHHHH-
Q 042941 205 CYDV-VSFS------CIISC-------YSKARNLHKVLRLFDQMKR--MGIECDRK---------------VYNAVIHA- 252 (481)
Q Consensus 205 ~~~~-~~~~------~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~li~~- 252 (481)
. +. ..|+ .=|+. --+...+..|..+++++.. .|+..... .|..+|..
T Consensus 169 ~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 169 H-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 2 21 1221 11111 1123345566666666543 22211111 12111111
Q ss_pred ------------------------------------------------HHcCCC-------hHHHHHHHHHHHHcCCCCC
Q 042941 253 ------------------------------------------------LAKGRL-------VKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 253 ------------------------------------------------~~~~g~-------~~~a~~~~~~~~~~~~~~~ 277 (481)
+...|+ -+++..+++.....-...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111111 2223333333322211112
Q ss_pred hhhHHHHHHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCC-CHHHHH
Q 042941 278 VVTYNSLIKPLC---KARKLDEARQAFDEMLQR-GISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQP-TNDTYI 349 (481)
Q Consensus 278 ~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 349 (481)
..+|..+...-- .-++.+.....++++... .+.|+ .+|..+++...+.+ .+..+|....+.+..+ .+.+++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 222222211110 111244555555555443 22333 34555555555443 4478888888887666 777888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhh
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP--KTDELLQDWSYN 427 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~ 427 (481)
+++.-+|. ++..-|.++|+--.+. +..++.--...+.-+...|+-..|..+|++....++.|+. ..|..++..-.+
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 88887775 7889999999875543 2223444456777778889989999999999888666554 668888887666
Q ss_pred hhHHHHHHH
Q 042941 428 KQFVERQIA 436 (481)
Q Consensus 428 ~~~~~~~~~ 436 (481)
-|....+++
T Consensus 485 vGdL~si~~ 493 (656)
T KOG1914|consen 485 VGDLNSILK 493 (656)
T ss_pred cccHHHHHH
Confidence 666664443
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00068 Score=53.33 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH--HhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI--EDFQGL 144 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 144 (481)
.|..++..+. .++...+...++.+.+.... ++....+...+...+...|++++|...|+........|.. .....+
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3444444443 56666666666666654111 1111233333445566666666666666666654422221 122334
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWME 198 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 198 (481)
...+...|++++|+..++.... .+.....+......+. ..|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~-~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYL-AQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 5555666666666666654322 1223334444555555 56666666665553
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.021 Score=56.12 Aligned_cols=381 Identities=11% Similarity=0.119 Sum_probs=209.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCC
Q 042941 19 RNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGP 98 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 98 (481)
-+.|++.+-.+...++..+...-.+.+++|..+++......+ .|..+...+-..|.+.|+.++|..+|+..... -|
T Consensus 33 ~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P 108 (932)
T KOG2053|consen 33 GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YP 108 (932)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CC
Confidence 334455554444444444444445888999988887743332 38899999999999999999999999999876 34
Q ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC-ChhhHH---------HHHhhc-cCC
Q 042941 99 SLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK-NVQDAE---------HLMFCN-KDV 167 (481)
Q Consensus 99 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~---------~~~~~~-~~~ 167 (481)
+ ..-...+..+|++.+++.+-.++--++-+ ..+-++..|=++++.+...- ..+.+. +.++.+ ..+
T Consensus 109 ~---eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 109 S---EELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 4 67777788889998877654444333333 22334444444555444332 222222 222222 111
Q ss_pred CCCc----hHhHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 042941 168 FPFN----TKSFNIILNGWCNIIGSSREAERVWM-EMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242 (481)
Q Consensus 168 ~~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 242 (481)
.+-. ...|-.++ - ..|.+++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|. |
T Consensus 185 gk~~s~aE~~Lyl~iL---~-~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--D 258 (932)
T KOG2053|consen 185 GKIESEAEIILYLLIL---E-LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--D 258 (932)
T ss_pred CccchHHHHHHHHHHH---H-hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--c
Confidence 0111 12233332 2 6788999999994 343333333455556677888899999999999999998862 3
Q ss_pred HHHHHHHHHHHHc----C------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHH
Q 042941 243 RKVYNAVIHALAK----G------------RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC---KARKLDEARQAFDE 303 (481)
Q Consensus 243 ~~~~~~li~~~~~----~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~ 303 (481)
. |...+..+.+ . +..+...+..++.... -....|-+-+.++. .-|+.+++...|-+
T Consensus 259 d--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 259 D--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred c--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 2 4443332221 1 1112222222222211 02233444444444 44788876655543
Q ss_pred HHHCCCCC-------------CHHHHHHHHHHHhc--------------------------------hhHHHHHHHHHH-
Q 042941 304 MLQRGISP-------------TIRTYHAFLDIIRT--------------------------------GEEVFGLLESMR- 337 (481)
Q Consensus 304 m~~~~~~p-------------~~~~~~~li~~~~~--------------------------------~~~~~~~~~~~~- 337 (481)
-. |..| +..-...++..+.. .+.....+..+.
T Consensus 334 kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 334 KF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred Hh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 21 1111 11111122221110 111222222221
Q ss_pred --HcC------CCCCHH---------HHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042941 338 --KMG------CQPTND---------TYIMLIKKFSRWRQFGN---VFKVWNEISENGNGPDRSSYTALIHALFLNGKLE 397 (481)
Q Consensus 338 --~~~------~~~~~~---------~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (481)
+.| +-|+.. +-+.++..|-+.++... |+-+++.-.... +.|..+=-.+|..|.-.|-+.
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p 490 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFP 490 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCCh
Confidence 222 223322 23567788888888664 444444433322 234555557888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 398 EAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
.|.++|+.+--+.+.-|..-|.++
T Consensus 491 ~a~~~y~tLdIK~IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 491 DAYELYKTLDIKNIQTDTLGHLIF 514 (932)
T ss_pred hHHHHHHhcchHHhhhccchHHHH
Confidence 999999988766676666555443
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00046 Score=54.33 Aligned_cols=20 Identities=5% Similarity=-0.140 Sum_probs=8.6
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 042941 248 AVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~ 267 (481)
.....|.+.|+.++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33344444444444444443
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.00016 Score=66.33 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=87.3
Q ss_pred CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 166 DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR--GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
...+-+......++.... ...+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~-~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVE-SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcC-CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 334455666666666666 666677777777777654 22222334567888888888888888888887778888888
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 291 (481)
.+++.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888777666655666666666665554
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.96 E-value=0.00018 Score=66.01 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=105.6
Q ss_pred cCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC---CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 042941 132 FKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV---FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV 208 (481)
Q Consensus 132 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 208 (481)
.+.+.+......+++.+....+++.+..++.+.+.. ...-..+..++++.|. +.|..+.++.++..=...|+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l-~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCL-ELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHH-hcCCHHHHHHHHhChhhcccCCCh
Confidence 344567778888999999999999999998876543 2233445679999999 999999999999999999999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
.++|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999998887777888888777777666
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.1e-05 Score=44.16 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQL 411 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 411 (481)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.94 E-value=0.00022 Score=50.99 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhHHH
Q 042941 349 IMLIKKFSRWRQFGNVFKVWNEISENGN-GPDRSSYTALIHALFLNG--------KLEEAHQYYMEMKEKQLLPEPKTDE 419 (481)
Q Consensus 349 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~ 419 (481)
...|..|...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666667999999999999999999 899999999999887653 2446788999999999999999999
Q ss_pred HHHHHHhh
Q 042941 420 LLQDWSYN 427 (481)
Q Consensus 420 ~l~~~~~~ 427 (481)
+++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987754
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2.9e-05 Score=42.36 Aligned_cols=29 Identities=55% Similarity=0.896 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.77 E-value=0.00082 Score=54.64 Aligned_cols=106 Identities=17% Similarity=0.308 Sum_probs=66.7
Q ss_pred ccHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh
Q 042941 206 YDVVSFSCIISCYSKA-----RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT 280 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (481)
.|..+|..++..|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------- 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------- 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-------------
Confidence 4667777777776643 5566666677777777777777777777776654 2221 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHH
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVF 330 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 330 (481)
++...| -.+-+-|++++++|...|+.||..++..+++.+++.+.+.
T Consensus 110 --~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 110 --AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred --HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 111111 1345667788888888888888888888888877776663
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.00093 Score=58.97 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRR-YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
.+|..++...-+.+..+.|..+|.+..+. ...+...|...... +...++.+.|..+|+...+. ...+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 35666666666666677777777776643 11123344433333 22245555677777666653 33455566666
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCch---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNT---KSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
++.+...++.+.|..+|++.....+++. ..|...+..=. +.|+.+.+.++.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~-~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES-KYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH-HHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 6666666666667666666554443333 35666666555 666666666666665553
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00073 Score=51.07 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=43.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHhHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA--VGIEDFQGL 144 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 144 (481)
+......+.+.|++++|.+.|+.+.+.. |+ +....++..+...+...|+++.|...|+.+...... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444445555555555555555554431 11 111234444555555555555555555555432211 012233344
Q ss_pred HHHHHcCCChhhHHHHHhhccC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~ 166 (481)
..++.+.|+.++|...++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 4444445555555555544433
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00084 Score=48.04 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
+...+...|++++|...++...+.. +.+...+..+..++...+++++|.+.++...+.... +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 3444445555555555555554432 223344444555555555555555555555544322 23344455555555555
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
++.|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.00056 Score=55.58 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH
Q 042941 397 EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE 432 (481)
Q Consensus 397 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 432 (481)
+-|++++++|...|+.||..|+.+++..+++.+..-
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 456666666766666777777666666666555444
No 158
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.038 Score=49.49 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
..+.+..|.-+...|+...|.++-++.. .|+...|...+.+++..+++.++.+.... +-++.-|..++.+|.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 4455666777788888888887766652 37888888889999988888777766554 2344678889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
.|+..+|..++..+ + +..-+..|.+.|++.+|.+...+
T Consensus 250 ~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998887762 1 24567788899999998876544
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0017 Score=49.01 Aligned_cols=60 Identities=7% Similarity=-0.034 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGI--ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+..++.+.|+++.|...|+.+..... +.....+..+..++.+.|+.++|...++++.+.
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 344444444444444444444443210 001223333444444444444444444444443
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.62 E-value=0.035 Score=47.80 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
+...+-.....+.+.|++++|.+.|+.+......+ +....+.-.+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33334344555566788888888888887762211 1112223456677788888888888888887653
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.61 E-value=0.00094 Score=47.77 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=6.9
Q ss_pred HHhccCChhHHHHHHHHH
Q 042941 74 ILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~ 91 (481)
.+...|++++|...++..
T Consensus 9 ~~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 9 LYYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHHhcHHHHHHHHHHH
Confidence 333333333333333333
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00019 Score=50.25 Aligned_cols=80 Identities=11% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHhcCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 187 GSSREAERVWMEMSQRGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+ +.+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554321 1233333355555556666666555555 2221 11222222335555555555555555
Q ss_pred HHH
Q 042941 266 MKS 268 (481)
Q Consensus 266 ~~~ 268 (481)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.0031 Score=51.25 Aligned_cols=85 Identities=8% Similarity=-0.083 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG--IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
..+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.....+.+...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3444444444555555555555555443321111 23344444555555555555555544333333334444444444
Q ss_pred HHHhcCCH
Q 042941 182 WCNIIGSS 189 (481)
Q Consensus 182 ~~~~~~~~ 189 (481)
+. ..|+.
T Consensus 116 ~~-~~g~~ 122 (172)
T PRK02603 116 YH-KRGEK 122 (172)
T ss_pred HH-HcCCh
Confidence 44 44443
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.018 Score=49.60 Aligned_cols=183 Identities=11% Similarity=0.043 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH---HHHHHHHHcCCChhhHHHHHhhccCCCCCchH-hHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF---QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK-SFNII 178 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l 178 (481)
+..+-.....+...|++++|...|+.+...-..+ ...- -.+..++.+.+++++|...+++.....|.+.. -+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4444445555566788888888888887643221 2222 34567778888888888888775443332222 22222
Q ss_pred HHHHHH-hcC---------------CH---HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 179 LNGWCN-IIG---------------SS---REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 179 ~~~~~~-~~~---------------~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
+.+.+. ..+ +. ..|.. ++..+++-|=.+.-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~---------------~~~~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR---------------DFSKLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH---------------HHHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 232220 010 11 11222 2333344344444445555444444321
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG--VAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
.- ..--.+.+.|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+.
T Consensus 174 -la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 111245667888888888888888888752 22234455677788888899888888776654
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0048 Score=47.91 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+...+...|++++|..+|+.+...+ +-+..-|-.|.-++-..|++++|...|.......+. |...+-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34444556677777777776666654 334455555666666667777777777766666543 5666666666666777
Q ss_pred CHHHHHHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQ 306 (481)
Q Consensus 293 ~~~~a~~~~~~m~~ 306 (481)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777766665544
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0021 Score=56.82 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA-LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +.-.++.+.|..+|+.....++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56667777777777777777777776432 2233344433333 333455666777777755556667777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCccc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 184 NIIGSSREAERVWMEMSQRGICYD---VVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
..++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+.+.+.
T Consensus 82 -~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 -KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777655 2222 236666777666777777777777666654
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.51 E-value=0.0039 Score=57.22 Aligned_cols=91 Identities=9% Similarity=-0.058 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 042941 180 NGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (481)
..+. ..|++++|+..|++....... +...|..+..+|.+.|++++|+..++.+.... +.+...|..+..+|...|++
T Consensus 10 ~~a~-~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAF-VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 3344 567777777777777765433 45566666677777777777777777777654 34566677777777777777
Q ss_pred HHHHHHHHHHHHcC
Q 042941 260 KDAISLMKSMEEKG 273 (481)
Q Consensus 260 ~~a~~~~~~~~~~~ 273 (481)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.45 E-value=0.00031 Score=49.22 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=7.9
Q ss_pred HHHHHHcCCChhhHHHHHh
Q 042941 144 LLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~ 162 (481)
+..++.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444443
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.018 Score=45.58 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CCHHh
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VGIED 140 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 140 (481)
-|++..--.+..++.+.|+..+|...|++...--...| ......+.++....+++..|...++++-+.+.. .++.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 38888888999999999999999999999887444445 888888999999999999999999998875421 23444
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
...+.+.+...|...+|+.-|+...+- -|+...-......+. +.|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar~~Y~e~La-~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY-YPGPQARIYYAEMLA-KQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHHHHHHHHHH-HhcchhHHHHHHHHHH
Confidence 556778899999999999999875542 345544434444445 7777766665444443
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.012 Score=47.77 Aligned_cols=84 Identities=12% Similarity=-0.041 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
.+..+...+. ..|++++|...|++....+..++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 37 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3444444455 55666666666665554432221 2345555566666666666666666665542 223444445555
Q ss_pred HHHcCCCh
Q 042941 252 ALAKGRLV 259 (481)
Q Consensus 252 ~~~~~g~~ 259 (481)
++...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 55555543
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0067 Score=47.12 Aligned_cols=99 Identities=8% Similarity=0.006 Sum_probs=74.0
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+......+...+. ..|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|......+ +-|+..+-.+.
T Consensus 34 ~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 3344444555556 788888888888888776433 44556667777888888888888888888876 45778888888
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.++...|+.+.|.+.|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.0088 Score=44.66 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=22.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVG--IEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+-..|+.++|+.+|+.....|+... ...+..+...+...|++++|..+++.
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344555555555555554443322 12233344444444555555555444
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.022 Score=54.81 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
+.+...|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++... +.|...||...
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~ 492 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWI 492 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 4455677777666777899999999999999864 6888999999999999999999999999876 56776665443
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.32 E-value=0.0048 Score=56.60 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=37.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHH
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAER 194 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 194 (481)
..|+++.|+..|+++.+.+ +-+...|..+..+|...|++++|+..+++.....+.+...|..+..++. ..|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHH
Confidence 3444444444444444332 1133334444444444444444444444433333334444444444444 4455555555
Q ss_pred HHHHHHh
Q 042941 195 VWMEMSQ 201 (481)
Q Consensus 195 ~~~~~~~ 201 (481)
.|+....
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444444
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.046 Score=48.51 Aligned_cols=148 Identities=9% Similarity=0.084 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCc-ccHHhHHHHH
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII-GSSREAERVWMEMSQR----GIC-YDVVSFSCII 215 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll 215 (481)
...+..|...|++..|-+++.. +...|- .. |+++.|.+.|++..+. |-. .-...+..+.
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~--------------lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE--------------LAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH--------------HHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH--------------HHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 3344556666666666554433 333444 44 6777777777765432 211 1123455667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--C--hhhHHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIE-----CDRK-VYNAVIHALAKGRLVKDAISLMKSMEEKGVAP--N--VVTYNSLI 285 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~li 285 (481)
..+.+.|++++|.++|++....... .+.. .+-..+-++...||+..|.+.+++.....+.. + ......||
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 7788888888888888887764322 1221 22233445666788888888888876543211 1 22334455
Q ss_pred HHHHh--cCCHHHHHHHHHHH
Q 042941 286 KPLCK--ARKLDEARQAFDEM 304 (481)
Q Consensus 286 ~~~~~--~g~~~~a~~~~~~m 304 (481)
.+|-. ...+..+..-|+.+
T Consensus 243 ~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 243 EAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHhCCHHHHHHHHHHHccc
Confidence 55432 12344444444444
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.015 Score=47.04 Aligned_cols=79 Identities=13% Similarity=-0.082 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
.+..+...+. ..|++++|+..|+........+ ...++..+...+...|++++|...++...... +....++..+..
T Consensus 37 ~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3444444444 5566666666666655442221 12355555666666666666666666665542 223334444444
Q ss_pred HHH
Q 042941 252 ALA 254 (481)
Q Consensus 252 ~~~ 254 (481)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.038 Score=46.38 Aligned_cols=131 Identities=14% Similarity=-0.002 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH--
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL-- 145 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-- 145 (481)
-++++..+.-.|.+.-..+++.++.+....-+ +.....+.+...+.||.+.|...|++..+..-+.+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34444555555555556666666555432222 4455555555555566666666665554333233333333222
Q ss_pred ---HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 146 ---SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 146 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
..|.-.+++-.|...+.++....+.++..-|.-.-+.. -.|+...|++.++.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll-Ylg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL-YLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 22333444444555554444333334433333222222 335555555555555544
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.0017 Score=43.18 Aligned_cols=64 Identities=9% Similarity=0.195 Sum_probs=51.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 422 (481)
...|++++|.++|+++...... +...+..+..+|.+.|++++|..+++++... .|+...+..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4679999999999999886433 7778888999999999999999999998874 57765555444
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.0011 Score=44.22 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=27.6
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
+.|++++|+++|+.+... ++.+..++..+..++.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666666655554 222355555555566666666666666655554
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0022 Score=42.25 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=49.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+...+...|++++|.+.|+++.+... -+...+..+..++.+.|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678899999999999999998753 36778889999999999999999999998763
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.18 E-value=0.0027 Score=41.80 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
+...+.+.|++++|.+.|+.+.+. ++.+...+..+...+...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677888899999999988887 3445788888888888889999999888888764
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.031 Score=49.64 Aligned_cols=168 Identities=11% Similarity=0.131 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHcC-CChHHHHHHHHHHHHc----CCCC--ChhhHHHHHHHHH
Q 042941 223 NLHKVLRLFDQMKR----MGIECD--RKVYNAVIHALAKG-RLVKDAISLMKSMEEK----GVAP--NVVTYNSLIKPLC 289 (481)
Q Consensus 223 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~ 289 (481)
++++|...++.... .| .|+ ...+..+...|... |+++.|.+.|++..+. + .+ -...+..+...+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 55555555555432 22 222 22445566667777 8999999999887543 2 11 1334566778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND-TYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
+.|++++|.++|++........+.. +.+.. .|...+-++...|++..|.+.+
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~---------------------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLL---------------------------KYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTT---------------------------GHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhccccc---------------------------chhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987754321110 11111 2223333556678999999999
Q ss_pred HHHHHC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042941 369 NEISEN--GNGPD--RSSYTALIHALFL--NGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423 (481)
Q Consensus 369 ~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 423 (481)
++.... ++..+ ......|+.+|-. ...+++|+.-|+.+. +.|++--.+|+.
T Consensus 220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~~ 276 (282)
T PF14938_consen 220 ERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLLK 276 (282)
T ss_dssp HHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHHH
Confidence 988764 33323 3356667777654 345677777776653 456666555554
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.13 E-value=0.055 Score=40.45 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=52.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCC
Q 042941 185 IIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD----RKVYNAVIHALAKGRL 258 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~ 258 (481)
..|+.++|+.+|++....|+..+ ...+-.+...+...|++++|..+++...... |+ ......+.-++...|+
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCC
Confidence 56667777777776666665533 2234445556666677777777776665541 22 1122222334556666
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
.++|...+-..... +...|..-|..|.
T Consensus 91 ~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 91 PKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 66666666554432 3334444444443
No 184
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.12 E-value=0.0065 Score=47.87 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDELL 421 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 421 (481)
....++..+...|+++.|..+.+.+....+ .+...|..+|.+|...|+..+|.++|+++.. .|+.|++.+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 556677888899999999999999998643 4788999999999999999999999998744 3999999886554
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.032 Score=46.73 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
.-.....+...|++.+|...|+.+..... .++....+...++.++-+.|+++.|...++...+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344455567777777777777766421 13334556666777777777777777777776653
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0024 Score=42.62 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKR 131 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 131 (481)
+...|..+...+...|++++|+..|++..+. ++.++..|..+..++...| ++++|+..++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556777777777777777777777777765 4444667777777777777 57777777776665
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.06 E-value=0.014 Score=47.30 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=25.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
.|..+...+...|++++|+..|+........|. ....++..+...+...|++++|+..++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444433211110 012234444444444444444444444444
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.055 Score=52.17 Aligned_cols=138 Identities=10% Similarity=0.060 Sum_probs=89.0
Q ss_pred CCCCCchHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhc--------CCHHHHHHHH
Q 042941 166 DVFPFNTKSFNIILNGWCNII-----GSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKA--------RNLHKVLRLF 231 (481)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~~-----~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~--------~~~~~a~~~~ 231 (481)
...+.+...|...+++.. .. ++...|..+|++..+. .|+ ...|..+..++... .+...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~-~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHH-YLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345567777777777644 22 2366788888888776 333 33444333332221 1233444444
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 232 DQMKRM-GIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 232 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
...... ..+.+...|.++.-.....|++++|...+++....+ |+...|..+...+...|++++|.+.+++..+.+
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 443332 234455677777666667788999999999888864 577788888888888999999999988877654
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.07 Score=45.91 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (481)
+.+++.+|+..|.+.+....+ |.+-|..-..+|++.|.++.|++-.+.....+ +-...+|..|..+|...|++++|.+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 456666666666666655322 44455555566666666666666655555543 2334566666666666666666666
Q ss_pred HHHHHHHcCCCCChhhH
Q 042941 265 LMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ 281 (481)
.|++..+. .|+-.+|
T Consensus 171 aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 171 AYKKALEL--DPDNESY 185 (304)
T ss_pred HHHhhhcc--CCCcHHH
Confidence 66666553 3444444
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.01 Score=50.74 Aligned_cols=84 Identities=10% Similarity=-0.057 Sum_probs=39.2
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
+.+++++|+..|.+.++. ++.++..|..-..+|.+.|..+.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HhhhHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 444555555555555443 33334444444455555555555555444444432 1123344455555555555555
Q ss_pred HHHHHhhcc
Q 042941 157 AEHLMFCNK 165 (481)
Q Consensus 157 a~~~~~~~~ 165 (481)
|++.|++..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 555544433
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.3 Score=44.68 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=90.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCC----CCChhhHHHHHHHHHhc--------CC-------HHHHHHHHHHHHHC
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGV----APNVVTYNSLIKPLCKA--------RK-------LDEARQAFDEMLQR 307 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~--------g~-------~~~a~~~~~~m~~~ 307 (481)
+..+.++...|++.++..+++++...=. ..++.+|+.++-.+.++ .. ++.+.-+.++|...
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4455666667777777766666654322 24666666544333321 11 23333333333222
Q ss_pred ------CCCCCHHHHHHHHHHHhchh-----HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042941 308 ------GISPTIRTYHAFLDIIRTGE-----EVFGLLESMRKMGCQPTND-TYIMLIKKFSRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 308 ------~~~p~~~~~~~li~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 375 (481)
.+.|....+..++....-.. -..++++.....-+.|+-. +...++..+.. +.+++..+.+.+....
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~ 289 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK 289 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh
Confidence 23344444555554433221 1255555555555666543 34455555555 6666666666555432
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 376 NGP----DRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 376 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+.+ -..++..++....+.++..+|-..+.-+.- +.|+..
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~s 332 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRIS 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcch
Confidence 211 244678888888999999999998887765 345544
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.95 E-value=0.0057 Score=40.80 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR-LVKDAISLMKSMEE 271 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 271 (481)
+|..+...+...|++++|+..|.+..+.+ +.+...|..+..++...| ++++|.+.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444444444444555544444444442 223444444444444444 34444444444433
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.85 E-value=0.0061 Score=48.01 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hcCCCCCHHh
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK-----RFKFAVGIED 140 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 140 (481)
+...++..+...|+++.|..+++.+... +|.+...|..+|+++...|+...|+..|+.+. +.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444455555667777777777777665 55556777777777777777777777776654 2466666554
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.052 Score=46.81 Aligned_cols=103 Identities=9% Similarity=-0.032 Sum_probs=70.0
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCcccHHhHH
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG--SSREAERVWMEMSQRGICYDVVSFS 212 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~ 212 (481)
+-|...|-.|...|...|+++.|..-|.+.....+++...+..+..++....| ...++..+|+++...... |+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 34677777788888888888888877777655556666666666665552222 335677777777766333 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.|...+...|++.+|...++.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66677777888888888888887763
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.81 E-value=0.19 Score=40.09 Aligned_cols=131 Identities=10% Similarity=-0.010 Sum_probs=91.4
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-ccHHhHH
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YDVVSFS 212 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~ 212 (481)
-|++..--.|..++.+.|+..+|...|++...+ +..|....-.+.++.. ..+++..|...++.+.+.+.. -+..+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 466666667888888889999999888875444 5667777777888888 788888888888888765321 1222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
.+.+.+...|.+.+|..-|+..... -|+...-......+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5667788888888888888888775 45555554455566677766655443333
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.026 Score=42.60 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEIS---------------ENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..++..++.++++.|+++....+++..= .....|+..+..+++.+|+..|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4567778888888888888777776541 1234688999999999999999999999999998876
Q ss_pred -CCCCCHhHHHHHHHHH
Q 042941 410 -QLLPEPKTDELLQDWS 425 (481)
Q Consensus 410 -~~~p~~~~~~~l~~~~ 425 (481)
++..+..+|..|+.+.
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 7777888888888864
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.64 Score=45.02 Aligned_cols=120 Identities=10% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISE-NGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
.|-.+..-....|.++.|+..--.+.+ .++-|....|..+.-+-+....+.-.-+.|-++....--|+.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a---------- 1092 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA---------- 1092 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH----------
Confidence 344444555666777777766555544 345566667776666555555555555555554433211221
Q ss_pred hhhhHHHHHHHHHhhcCccCCCCcccccccccc------------chhhccCccccchhcccc
Q 042941 426 YNKQFVERQIASLKAHQPQSGQNTRVISKKSDQ------------DREFLQQPETRRVVRHQG 476 (481)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~r~~~~~~~ 476 (481)
.+.+..+-+++.+.+..|.++.....=...... ++++......-+-+.+.-
T Consensus 1093 ~kq~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~ 1155 (1189)
T KOG2041|consen 1093 EKQEYENLAFRIFSKNPPVDPNSAKVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNI 1155 (1189)
T ss_pred HHHHHHHHHHHHhccCCCCCCCccceeeeecCCcCCccCCCChhhcCcCceeeccCCccccce
Confidence 123334466777777777776655543333333 566666666666555543
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.016 Score=39.03 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 353 KKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 353 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
..|.+.+++++|.+.++.+...+.. +...|......+.+.|++++|.+.|++..+. .|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 5688999999999999999997543 6778888899999999999999999999874 4666554433
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.14 Score=44.26 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=52.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCChhhHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG---RLVKDAISLMKSMEEKGVAPNVVTYNS 283 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (481)
|...|-.|...|...|+++.|..-|....+.. .++...+..+..++... .+-.++..+|+++...... |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 55556666666666666666666665555542 23444444443333221 2234555666666554333 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666554
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.55 E-value=0.082 Score=45.97 Aligned_cols=98 Identities=6% Similarity=-0.104 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMG--IECDRKVYNAV 249 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 249 (481)
.|...+..+. +.|++++|...|+.+....+... ...+-.+...|...|++++|...|+.+.+.. -+.....+-.+
T Consensus 145 ~Y~~A~~l~~-~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQ-DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444 56777777777777766532211 2355566667777777777777777776542 01122333334
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc
Q 042941 250 IHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..++...|+.+.|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566667777777777766655
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.4 Score=40.55 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH-----
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVF-PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII----- 215 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll----- 215 (481)
+.++.++...+.+.-....+.++.... +.++.....+++.-. +.|+.+.|...|++..+..-..|..+.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344455555555555555555533322 334445555555555 5566666666665554433223333333222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..|.-++++..|...+.++...+ +.|+...|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12333445555555555555443 223333333333333445555555555555554
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.54 E-value=0.042 Score=47.76 Aligned_cols=88 Identities=13% Similarity=-0.018 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC---chHhHHHHHHHHHHhcCC
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAV--GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF---NTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 188 (481)
.+.|++++|+..|+.+.+.-... .+..+-.+..+|...|++++|...|..+....|. ....+..+...+. ..|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCC
Confidence 33444555555555444322110 0123334444445555555555555443322222 1222222333344 4555
Q ss_pred HHHHHHHHHHHHhc
Q 042941 189 SREAERVWMEMSQR 202 (481)
Q Consensus 189 ~~~a~~~~~~~~~~ 202 (481)
.++|...|+.+.+.
T Consensus 233 ~~~A~~~~~~vi~~ 246 (263)
T PRK10803 233 TAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 203
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.46 E-value=0.012 Score=40.35 Aligned_cols=64 Identities=19% Similarity=0.416 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GN-GPD-RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+|+.+...|...|++++|+..+++..+. |. .|+ ..++..+...|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357888999999999999999999988652 21 122 45788889999999999999999998654
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=96.41 E-value=0.34 Score=38.13 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
.--+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|...-..+.. |...+-..-.+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 344567899999999999888765 345666777888888889999999999887666543 666667778888999999
Q ss_pred HHHHHHHHHHHHC
Q 042941 295 DEARQAFDEMLQR 307 (481)
Q Consensus 295 ~~a~~~~~~m~~~ 307 (481)
+.|...|....++
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888774
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.39 E-value=0.26 Score=36.77 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=76.5
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhchhHHH
Q 042941 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIR---TYHAFLDIIRTGEEVF 330 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~ 330 (481)
.-.|..++..++..+.... .+..-+|++|.-....-+-+-..++++.+-+- -|.. ....++.++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~---- 82 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKR---- 82 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHT----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHh----
Confidence 3456677777777776654 35555666665555544444444444443221 1111 011222222221
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
..+.......+.....+|+-++..++.+.+.+. -.+++...-.+..||.+.|+..++-+++++.-++|
T Consensus 83 -----------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 83 -----------NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -----------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -----------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 233445666778888889999988888888753 34677888888899999999999999999988887
Q ss_pred CC
Q 042941 411 LL 412 (481)
Q Consensus 411 ~~ 412 (481)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 53
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.39 E-value=0.023 Score=38.27 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=42.7
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
..+.+.++++.|.+.++.+... +|.++..+......+...|++++|...++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567778888888888888776 44456777777778888888888888888877654
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.39 E-value=0.7 Score=41.56 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
+.-+. ..|+...|.++-.+.. -||..-|...+.+++..++|++..++... +-++..|..++.+|.+.|.
T Consensus 184 i~~li-~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLI-EMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHH-HCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 33344 4555555555444332 13555555555555555555555443221 1123555555555555555
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
..+|..++..+ .+..-+..|.+.|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 55555555441 113344555555555555444
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.26 E-value=0.89 Score=41.46 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+-..+.+++.++.-.|++++|.+..++|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 44555677888888888888888888888764
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=1.3 Score=43.10 Aligned_cols=206 Identities=10% Similarity=0.019 Sum_probs=119.2
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcC-CCCCC-----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGG-ETGPS-----LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (481)
|-+..|..+...-...-.++.|+..|-+...- |++.- ..+......=+. +--|.+++|.++|-++.+.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh---
Confidence 67788888887776666777777766655431 22110 000111111122 22488999999987776543
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCC--CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF--PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCI 214 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 214 (481)
..+..+.+.|++-.+.+++..-.... ..-...|+.+...++ ....|++|.+.|..-... ...
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa-~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFA-EMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccch---------HhH
Confidence 35677788888888877776532221 122356777888887 778888888887654321 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKL 294 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 294 (481)
+.++.+..++++.+.+...+ +-+....-.+..++...|.-++|.+.|-+.-. | ...+.+|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 56666666666655554443 33444455566666666766666665543321 1 1344556666666
Q ss_pred HHHHHHHHH
Q 042941 295 DEARQAFDE 303 (481)
Q Consensus 295 ~~a~~~~~~ 303 (481)
.+|.++-+.
T Consensus 895 ~~avelaq~ 903 (1189)
T KOG2041|consen 895 GEAVELAQR 903 (1189)
T ss_pred HHHHHHHHh
Confidence 666655543
No 210
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.21 E-value=0.066 Score=45.49 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhch-----hHH---HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042941 312 TIRTYHAFLDIIRTG-----EEV---FGLLESMRKMGCQPTNDTYIMLIKKFSR 357 (481)
Q Consensus 312 ~~~~~~~li~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 357 (481)
|-.+|...+..+... +.+ ...++.|.+.|+.-|..+|+.|+..+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 455555555554322 122 5666677777777777777777776644
No 211
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.19 E-value=0.11 Score=39.25 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=28.7
Q ss_pred CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 042941 204 ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR-MGIECDRKVYNAVIHAL 253 (481)
Q Consensus 204 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 253 (481)
..|+..++.+++.+|+..+++..|+++++.+.+ .+++.+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345666666666666666666666666665544 34555555565555543
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.18 E-value=0.98 Score=41.19 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
+.+...++-.|....+++.-+++.+.+.
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~ 168 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLE 168 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 3344444444444444444444444444
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.18 E-value=0.63 Score=38.95 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=25.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGI--ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+...|++.+|.+.|+.+..... +--....-.++.++.+.|+++.|...+++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455555555555555554310 111223334445555555555555555555444
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=1 Score=40.90 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=94.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCChhhHHH----------
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH--ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS---------- 283 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 283 (481)
.++...|++++|...--...+.+ . ...+..+++ ++--.++.+.|...|++.+..+ |+-..-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 45566788888877777766653 2 223333333 3445677788888888777653 22222111
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042941 284 ---LIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ 360 (481)
Q Consensus 284 ---li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 360 (481)
--.-..+.|++..|.+.|.+.+... |+ +..|+...|........+.|+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~id--P~---------------------------n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNID--PS---------------------------NKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCC--cc---------------------------ccchhHHHHHHhHhhhcccCC
Confidence 1122346677777777777766532 33 236666777777777788888
Q ss_pred hhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 361 FGNVFKVWNEISENGNGPDRS---SYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
.++|+.-.+..... |.. .|..-..++.-.++|++|.+-|++..+.
T Consensus 303 l~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 303 LREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred chhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888877777663 322 2222233455667788888888776654
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=1.5 Score=42.93 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042941 275 APNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKK 354 (481)
Q Consensus 275 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 354 (481)
.....+.+--+.-+...|+-.+|.++-.+.+ -||-..|..=+.+++..++..++.+...+.. ++.-|..++.+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 3445555666666777777777777766553 2677777777777777777777776665543 24457777788
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
|.+.|+.++|...+.+.... . -...+|.+.|++.+|.++-
T Consensus 754 c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 88888888888777654321 1 4567777788877777653
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.11 E-value=0.38 Score=46.09 Aligned_cols=165 Identities=8% Similarity=0.006 Sum_probs=85.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCC-CCCC--cccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHHh
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGE-TGPS--LVTKQTLLILIRRYCA----VHDVGRAINAFYAYKRFKFAVGIED 140 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (481)
...++..+.=.|+-+..++++....+.+ +.-. ....-.|...+..++. ..+.+.|.+++..+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3345555555555555555555443321 1110 0012345555544443 34566777777777653 355444
Q ss_pred HHH-HHHHHHcCCChhhHHHHHhhccC---C-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH
Q 042941 141 FQG-LLSALCRYKNVQDAEHLMFCNKD---V-FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII 215 (481)
Q Consensus 141 ~~~-ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 215 (481)
|.. -.+.+...|++++|++.|+.... . .+.....+--+.-.+. -..+|++|...|..+.+.+-- +...|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 433 33555666777777777765221 1 1122333444555566 678888888888887765322 233333222
Q ss_pred -HHHHhcCCH-------HHHHHHHHHHHH
Q 042941 216 -SCYSKARNL-------HKVLRLFDQMKR 236 (481)
Q Consensus 216 -~~~~~~~~~-------~~a~~~~~~~~~ 236 (481)
.++...++. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 233445555 777777777654
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.10 E-value=0.091 Score=47.20 Aligned_cols=137 Identities=12% Similarity=-0.015 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSME----EKGVA-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
..|..|.+.|.-.|+++.|+...+.-. +.|-+ .....+..+-.+++-.|+++.|.+.|+.-....+.....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---- 271 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---- 271 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch----
Confidence 456666666777788888887655432 22221 123456677788888899999988887643211100000
Q ss_pred HHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhc
Q 042941 319 FLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE----N-GNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 319 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~ 393 (481)
.....+.-+|...|.-..++++|+..+++-.. . +..-....|.+|..+|...
T Consensus 272 -----------------------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 272 -----------------------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred -----------------------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 00111222334444444455555555443221 0 1112345667777777777
Q ss_pred CCHHHHHHHHHHHH
Q 042941 394 GKLEEAHQYYMEMK 407 (481)
Q Consensus 394 g~~~~A~~~~~~m~ 407 (481)
|..++|+.+...-.
T Consensus 329 g~h~kAl~fae~hl 342 (639)
T KOG1130|consen 329 GEHRKALYFAELHL 342 (639)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777665543
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.95 E-value=0.36 Score=45.60 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHH
Q 042941 28 KVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLL 107 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 107 (481)
.++...+..=..-++++.+.+.+....-.--+.+ +....+.++..+-+.|..+.|+.+...-.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------- 322 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD--------------- 322 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH---------------
Confidence 3444445444455566777765555422111111 24557777777777777777776654321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.-.....+.|+++.|.++.+. ..+...|..|.+...+.|+++-|++.|.+..+ +..++-.|. -.|
T Consensus 323 ~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~-~~g 387 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYS-STG 387 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHH-HCT
T ss_pred HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHH-HhC
Confidence 122334556777777766532 23566777777777777777777777765542 444555555 567
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 233 (481)
+.+...++.+.....|- ++....++.-.|+.++..+++..
T Consensus 388 ~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 388 DREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 76666666655554431 34444445555666666655543
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.82 E-value=0.54 Score=35.19 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
....+.....+|+-+...++++.+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555555555555555555432 44555555555555555555555555555555544
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.80 E-value=0.11 Score=47.90 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=66.2
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR----KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYN 282 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (481)
+...++.+..+|.+.|++++|+..|+...+.. |+. .+|..+..+|...|+.++|...+++..+.+ ...|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHH
Confidence 46678888889999999999999999988763 443 358888899999999999999999988752 11222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHHCCC
Q 042941 283 SLIK--PLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 283 ~li~--~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
.+.. .+....+.++..++++.+.+-|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122333456666666666554
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.042 Score=37.61 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRM----GI-ECD-RKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444455555555555555444321 10 011 233444444445555555555554443
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.67 E-value=0.25 Score=37.85 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=55.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC 149 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 149 (481)
.-.....+.|++++|.+.|+.+..+ .+..+.+..+...++.+|.+.++++.|...+++..+.........|...+.+++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344445778888888888888776 333455577778888888888888888888888887654322334555555554
Q ss_pred cC
Q 042941 150 RY 151 (481)
Q Consensus 150 ~~ 151 (481)
..
T Consensus 94 ~~ 95 (142)
T PF13512_consen 94 YY 95 (142)
T ss_pred HH
Confidence 43
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.57 E-value=0.86 Score=43.70 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC--CCC-----chHhHHHHHHHHHHh---cCCHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV--FPF-----NTKSFNIILNGWCNI---IGSSR 190 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~---~~~~~ 190 (481)
-..-+|.-+... ++| .+..++...+-.|+-+.+++.+...... +.. -...|+..+..++.. ....+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555542 233 3456888888888999998888764322 111 113466666666522 45778
Q ss_pred HHHHHHHHHHhcCCcccHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 191 EAERVWMEMSQRGICYDVVSFSCI-ISCYSKARNLHKVLRLFDQMKRMG---IECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 191 ~a~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
.|.++++.+... -|+...|... .+.+...|++++|++.|+...... -+.....+--+.-++.-..++++|...|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 899999999886 4666655433 356778899999999999755321 1223344555677788899999999999
Q ss_pred HHHHHcCCCCChhhHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 042941 267 KSMEEKGVAPNVVTYNSLIK-PLCKARKL-------DEARQAFDEMLQ 306 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~li~-~~~~~g~~-------~~a~~~~~~m~~ 306 (481)
..+.+..- .+..+|..+.. ++...|+. ++|.++|.+...
T Consensus 329 ~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99987632 24445554444 34456777 899999998754
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.50 E-value=0.2 Score=42.75 Aligned_cols=104 Identities=15% Similarity=0.299 Sum_probs=59.8
Q ss_pred cccHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 205 CYDVVSFSCIISCYSK-----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 205 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
+-|..+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..-.. ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP-----------------~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP-----------------QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-----------------HH
Confidence 4467777777666543 3556777777788888888888888888888765533211 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 327 (481)
.+..+.-.|-+ +-+-++.++++|...|+.||-.+-..+++++++.+
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 11111111211 22345555556666666666555555555555544
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.39 E-value=0.14 Score=47.16 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR----SSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.+...++.+..+|...|++++|+..|++..+.. |+. ..|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467788999999999999999999999988854 553 35889999999999999999999999875
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.38 E-value=1.5 Score=42.27 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.7
Q ss_pred hCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 57 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
++.|-.|+.. .+...++-.|++.+|-++|.+-
T Consensus 627 k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 627 KKRGETPNDL---LLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHc
Confidence 4566556654 3445566677888888777664
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=95.36 E-value=0.81 Score=36.06 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=62.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (481)
..|++++|..+|.-+.-.+.. +..-|..|..++-..+++++|...|......+ .-|+..+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 578888888888877665433 44445566667777888888888887766654 3455556667778888888888888
Q ss_pred HHHHHHHc
Q 042941 265 LMKSMEEK 272 (481)
Q Consensus 265 ~~~~~~~~ 272 (481)
.|+...+.
T Consensus 127 ~f~~a~~~ 134 (165)
T PRK15331 127 CFELVNER 134 (165)
T ss_pred HHHHHHhC
Confidence 88887763
No 228
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.36 E-value=0.25 Score=42.85 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHH
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDEL 420 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 420 (481)
.++..++..+..+|+++.+.+.++++..... -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4677889999999999999999999998754 4888999999999999999999999998866 489999988777
Q ss_pred HHHHH
Q 042941 421 LQDWS 425 (481)
Q Consensus 421 l~~~~ 425 (481)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66653
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=1.3 Score=38.51 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=79.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH-hHHHHHHHHHHhcCCH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK-SFNIILNGWCNIIGSS 189 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 189 (481)
......|++.+|...|......... +...-..+..+|...|+.+.|..++..+......+.. ....-+..+. +....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~-qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE-QAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH-HHhcC
Confidence 3455667777777777777654322 3444556777777777777777777776543221111 1112233333 33333
Q ss_pred HHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChH
Q 042941 190 REAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 260 (481)
.+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 3333333333332 3 44444556667777777777777666655432 1234556666777766666333
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=1.7 Score=36.59 Aligned_cols=208 Identities=8% Similarity=0.026 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...|.....+|....++++|...+.+..+- ..-+ ...|+. ....+.|.-+.+++.+. .--+..|+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnn---rslfhA-------AKayEqaamLake~~kl--sEvvdl~eKA 97 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN---RSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc---ccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 556777777888888999888877766531 0001 222221 12345555555555542 1223446667
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CcccHHhHHHHHHHHH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR---G--ICYDVVSFSCIISCYS 219 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---g--~~~~~~~~~~ll~~~~ 219 (481)
...|..+|..+.|-..+++... .. +..++++|+++|.+.... + ...-...+..+-+.+.
T Consensus 98 s~lY~E~GspdtAAmaleKAak---------------~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK---------------AL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH---------------Hh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 7788888888777666655221 12 455666666666653321 1 0112233455566677
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhc
Q 042941 220 KARNLHKVLRLFDQMKRM----GIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEKG---VAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~ 291 (481)
+...+++|-..+..-... .--++ -..|...|-.+.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 777777776655443211 11122 2345556666677778889999988754432 223566777788776 45
Q ss_pred CCHHHHHHHHH
Q 042941 292 RKLDEARQAFD 302 (481)
Q Consensus 292 g~~~~a~~~~~ 302 (481)
|+.+++..+..
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 77777766654
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=95.13 E-value=1.6 Score=40.71 Aligned_cols=162 Identities=10% Similarity=-0.024 Sum_probs=94.7
Q ss_pred HHH--HHHHHHHhcc--C---ChhHHHHHHHHHhc-CCCCCCcccHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 042941 66 REY--HTMIAILGKV--R---KFDTAWALIDEMRG-GETGPSLVTKQTLLILIRRYCA---------VHDVGRAINAFYA 128 (481)
Q Consensus 66 ~~~--~~li~~~~~~--g---~~~~a~~~~~~~~~-~~~~p~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~ 128 (481)
..| ..++.+.... + ..+.|..+|.+... ..+.|+ -...|..+..++.. ..+..+|.+..+.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~--~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL--KTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc--cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 556 5566655442 2 34578888888872 223444 24455544433322 2334566677777
Q ss_pred HhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc
Q 042941 129 YKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YD 207 (481)
Q Consensus 129 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~ 207 (481)
..+.+ +-|+.+...+..+..-.++++.|..+|++.....|....+|........ -.|+.++|.+.+++..+..+. .-
T Consensus 330 Aveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 330 VSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchhhH
Confidence 77665 3467777777776777777888888888765544444555554444444 568888888888876554221 22
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFD 232 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~ 232 (481)
.......+..|+..+ .+++.++|-
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 233344444565554 566666654
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=1.5 Score=41.49 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
...+.+++-+-+.|.++.|+++.. |+. .-.....+.|+++.|.++...+. +...|..|.....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHH
Confidence 345556666666666666666542 221 23344556666666666554332 4556666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|+++-|+..|.+..+ |..|+-.|.-.|+.+...++.+.....|. ++....++.-.|+.++..
T Consensus 359 -~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 359 -RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp -HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred -HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 66666666666655432 34444555666666666666655555441 333334444445555555
Q ss_pred HHHH
Q 042941 264 SLMK 267 (481)
Q Consensus 264 ~~~~ 267 (481)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.06 E-value=1.9 Score=36.71 Aligned_cols=83 Identities=14% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...|+..+ .-.+.|++++|.+.|+.+..+ .+-++.+..+...++.++-+.++.+.|+..+++..+.-.......|..-
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 33444444 445789999999999999865 3334555777778888888999999999999888865333222344455
Q ss_pred HHHHH
Q 042941 145 LSALC 149 (481)
Q Consensus 145 l~~~~ 149 (481)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55544
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=1.8 Score=43.15 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=39.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+.|++++|...|-+-... +.|. .+|.-|....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34455555555555443322 1221 2344444444555555555555555554 444445555566666555555
Q ss_pred HHHHHHH
Q 042941 298 RQAFDEM 304 (481)
Q Consensus 298 ~~~~~~m 304 (481)
.++.+..
T Consensus 451 ~efI~~~ 457 (933)
T KOG2114|consen 451 TEFISKC 457 (933)
T ss_pred HHHHhcC
Confidence 5544443
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=4.1 Score=40.22 Aligned_cols=126 Identities=10% Similarity=-0.028 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC---hhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN---VQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+|..+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+-+..+-+++.... ....+|..+..-..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay- 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY- 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH-
Confidence 35666777788889998888776432222 4566666666665532 222333334444433 34455666665555
Q ss_pred hcCCHHHHHHHHHHHHhcCCc----ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGIC----YDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
..|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+.+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 689999998888654333211 1222344555666777777777766666654
No 236
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.00 E-value=1.2 Score=36.27 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-HHhHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG-IEDFQG 143 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 143 (481)
...+..+...|.+.|+.+.|.+.|.++.+....|... ...+..+|+...-.+++..+...+.+....--.+. ...-+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678889999999999999999999998875555422 56778889999999999999988887764322222 211111
Q ss_pred --H--HHHHHcCCChhhHHHHHhhc
Q 042941 144 --L--LSALCRYKNVQDAEHLMFCN 164 (481)
Q Consensus 144 --l--l~~~~~~~~~~~a~~~~~~~ 164 (481)
. .-.+...+++..|-+.|-..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHcc
Confidence 1 11234457788877777554
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.90 E-value=3.1 Score=38.39 Aligned_cols=144 Identities=17% Similarity=0.268 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhchhHH--HHHHHHHHHcCCCCCHHHH-HHHHH
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRG-ISPTIRTYHAFLDIIRTGEEV--FGLLESMRKMGCQPTNDTY-IMLIK 353 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~ 353 (481)
...|+..+.+..+...++.|..+|-++.+.+ +.+++..+++++..++..+.+ ..+++.=... -||...| .-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3456777888888888999999999999988 678889999999998887655 5666543332 3444444 44566
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 042941 354 KFSRWRQFGNVFKVWNEISENGNGPD--RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSY 426 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 426 (481)
-+.+.++-+.|..+|+..... +..+ ...|..+|.-=..-|+...+..+=++|.+ +.|...+.......++
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 677889999999999955442 1112 45899999988899999999998888887 5677777666665543
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.66 E-value=0.72 Score=35.41 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=45.5
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCch---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNT---KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
....+.|++++|.+.|+.+....|.+. ..--.++.+|. +.+++++|...+++..+..+...-.-|...+.+++...
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334455667777766666655544333 33445666677 77777777777777777655434445555555555443
No 239
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.57 E-value=1.9 Score=34.36 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-hhHHHHHHHHHHHc-CC
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT-GEEVFGLLESMRKM-GC 341 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~~~~~~~~~-~~ 341 (481)
+++..+.+.+++|+...+..++..+.+.|++.. +.++...++-||.......+-.+.. ...+.++--.|.+. +
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 444555566666677777777777777666443 3344444555555544444333322 22222222222221 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..+..+++.+...|++-+|.++.+..... +......++.+..+.++...=..+|+-..++
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 14556777788888888888887765332 1122345677777777766655555555443
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.88 Score=38.98 Aligned_cols=102 Identities=16% Similarity=0.042 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC-HHhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF-AVG-IEDFQGL 144 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l 144 (481)
.|+.-+..+ +.|++..|...|....+... -+..++.++-.|...+...|+++.|..+|..+.+.-. .|. +..+-.|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 455555544 44556667766666665422 2334455666666666666666666666666654221 111 2445555
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPF 170 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~ 170 (481)
..+..+.|+.++|...|+++...+|-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 55666666666666666665544443
No 241
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.48 E-value=0.5 Score=41.10 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCCHHhH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR-----FKFAVGIEDF 141 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 141 (481)
++..++..+...|+++.+.+.++++... ++.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4455555666666666666666666665 555566666666666666666666666665543 4555555554
Q ss_pred HHHHHH
Q 042941 142 QGLLSA 147 (481)
Q Consensus 142 ~~ll~~ 147 (481)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444333
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.47 E-value=2.7 Score=35.79 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHhcC
Q 042941 28 KVSSELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAH-STREYHTMIAILGKVRKFDTAWALIDEMRGG 94 (481)
Q Consensus 28 ~~~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 94 (481)
.|-...|+..+..+ .+++++|...|+.+..+++..| ...+--.++.++-+.++++.|+...++..+.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 46677899999998 5899999999999986665444 6777778888889999999999999998775
No 243
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.46 E-value=2 Score=34.09 Aligned_cols=139 Identities=13% Similarity=0.045 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH-hHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE-DFQ 142 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 142 (481)
+...|...+. +++.+..++|+.-|..+.+.|...-+ .-............|+-..|...|++.-.....|-+. ...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 4455555554 45677889999999999888765442 3344555666778899999999999988655445443 222
Q ss_pred H--HHHHHHcCCChhhHHHHHhhccC-CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc
Q 042941 143 G--LLSALCRYKNVQDAEHLMFCNKD-VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICY 206 (481)
Q Consensus 143 ~--ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~ 206 (481)
. ...++...|.+++.....+.+.. +.+.....-..|.-+-. +.|++..|.+.|..+......|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~-kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY-KAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH-hccchHHHHHHHHHHHccccCc
Confidence 2 23456788999998888877643 33444445556666666 8999999999999887753333
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.41 E-value=1.8 Score=33.54 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=22.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV 116 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~ 116 (481)
.++..+...+.+.....+++.+...+. .++..++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~----~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS----ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc----cchhHHHHHHHHHHHH
Confidence 445555555555555555555555431 2244555555555543
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.37 E-value=3.5 Score=36.56 Aligned_cols=225 Identities=12% Similarity=0.049 Sum_probs=119.6
Q ss_pred hccCChhHHHHHHHHHhcCCCCCCcccH-----HHHHHHHHHHHhcC-CHHHHHHHHHHHhhc--------CCCCCH---
Q 042941 76 GKVRKFDTAWALIDEMRGGETGPSLVTK-----QTLLILIRRYCAVH-DVGRAINAFYAYKRF--------KFAVGI--- 138 (481)
Q Consensus 76 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----~~~~~li~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 138 (481)
.+.|+++.|..++.+........++... ..|+. .......+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 4678888888888887664211121111 11222 22233445 777777666655432 122332
Q ss_pred --HhHHHHHHHHHcCCChhh---HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 139 --EDFQGLLSALCRYKNVQD---AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 139 --~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
.++..++.+|...+..+. |..+++.+....+..+.++-.-+..+. +.++.+.+.+.+.+|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~-~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILL-KSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHh-ccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 346667788888776554 445555555555555666767777777 688899999999999876221 2334444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HH-HHHHHH---HHcCCC------hHHHHHHHHHHHHc-CCCCCh
Q 042941 214 IISCY---SKARNLHKVLRLFDQMKRMGIECDRK-VY-NAVIHA---LAKGRL------VKDAISLMKSMEEK-GVAPNV 278 (481)
Q Consensus 214 ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~li~~---~~~~g~------~~~a~~~~~~~~~~-~~~~~~ 278 (481)
++..+ .... ...+...+..+....+.|... .. ..++.. ..+.++ .+....+++.+.+. +.+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44443 3333 345555555555444454443 11 111111 112111 44444555543322 222233
Q ss_pred hhHHHH-------HHHHHhcCCHHHHHHHHHHH
Q 042941 279 VTYNSL-------IKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 279 ~~~~~l-------i~~~~~~g~~~~a~~~~~~m 304 (481)
.+-.++ ...+.+.++++.|.+.|+-.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 332222 22345678999999988753
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.35 E-value=0.005 Score=34.10 Aligned_cols=33 Identities=3% Similarity=0.033 Sum_probs=29.2
Q ss_pred HHHHhhcCccCCCCccccccccccchhhccCcc
Q 042941 435 IASLKAHQPQSGQNTRVISKKSDQDREFLQQPE 467 (481)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 467 (481)
.+...+.+|+++..+..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 456788899999999999999999999999864
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=2.1 Score=42.65 Aligned_cols=176 Identities=11% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH----HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL----SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
...-+..+++...++.|+.+.+.- + .+..+...++ +-+.+.|++++|...|-+......|. .++.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHH
Confidence 334455555566666666655431 2 2333333333 33446677777777765533333322 23444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
|. ...+...-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fL-daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FL-DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hc-CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 45 556666666677777777766 44455667777777777777666655443 2211 1123344555555555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
|..+-..... +......+ +-..+++++|++++..+
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 5544433322 22222222 23346666666666554
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=1.3 Score=37.90 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=82.0
Q ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 31 SELVSEVLSWV-RNDWEAAFTFFLWAGKQS-GYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 31 ~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
...|...+..+ .+++..|..-|....+.. +-.-...++-.|...+...|++++|..+|..+.+.. +-++-.+.++..
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCCChHHHHH
Confidence 44789888887 578899998888887554 333456788899999999999999999999987752 223334688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
|.....+.|+.++|..+|+.+.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.29 E-value=1.3 Score=45.94 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHhh
Q 042941 30 SSELVSEVLSWVRNDWEAAFTFFLWAG 56 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~~~~~~~ 56 (481)
+-.....|....+.++.+=+-+++.+.
T Consensus 852 Dl~Lal~VAq~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 852 DLDLALLVAQKSQKDPKEYLPFLNELK 878 (1265)
T ss_pred chHHHHHHHHHhccChHHHHHHHHHHh
Confidence 445555555556677777666666664
No 250
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.27 E-value=4.5 Score=37.48 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHhch------hHHHHHHHHHHHcCCCCCHH----HHHHHHHH--HHh
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFL----DIIRTG------EEVFGLLESMRKMGCQPTND----TYIMLIKK--FSR 357 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~ 357 (481)
-++|+++++...+-.. -|...-+.+. .+|.+. .+...+-+.+.+.|++|-.. .-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6667777776665421 1222222222 233322 22355555666777766432 33334332 456
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042941 358 WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420 (481)
Q Consensus 358 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 420 (481)
+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.. ++|+..+++.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 7888888766666655 568888888888888888888899888876 4566666653
No 251
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.25 E-value=3.8 Score=36.52 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhch-----
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCK--A----RKLDEARQAFDEMLQRGI---SPTIRTYHAFLDIIRTG----- 326 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~----- 326 (481)
+...+++.|.+.|.+-+..+|-+....... . .....|..+|+.|++... .++...+..++..-...
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~ 159 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELA 159 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHH
Confidence 344555666666666555444432222211 1 124456666666666532 24445555555442111
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HH
Q 042941 327 EEVFGLLESMRKMGCQPTND--TYIMLIKKFSRWRQ--FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL----EE 398 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~ 398 (481)
+.+..+++.+.+.|+..+-. ....++..+..... ...+.++++.+.+.|+++....|..+.-...-.+.. +.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~ 239 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEE 239 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHH
Confidence 23355666666666554332 23333333222222 457788888888888888887777665443333333 33
Q ss_pred HHHHHHHHHHC
Q 042941 399 AHQYYMEMKEK 409 (481)
Q Consensus 399 A~~~~~~m~~~ 409 (481)
..++.+.+.+.
T Consensus 240 i~ev~~~L~~~ 250 (297)
T PF13170_consen 240 IKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHhhC
Confidence 34444444443
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=2 Score=39.01 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=46.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCcc---------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 181 GWCNIIGSSREAERVWMEMSQR-----GICY---------DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~-----g~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
.|. +.|++..|..-|++.... +..+ -..++..+.-++.+.+++..|++.-+..+..+ ++|+...
T Consensus 217 ~~f-K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 217 VLF-KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred HHH-hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 455 677777777777664432 1110 11233444445555555555555555555543 3444444
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
---..+|...|+++.|...|+.+.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44455555555555555555555553
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.20 E-value=0.14 Score=30.29 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
++..+...|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555543
No 254
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.89 E-value=6.8 Score=38.10 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC--------cccHHHHHHHHHHHHhcCCH--HHHHHHHHHHhh
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS--------LVTKQTLLILIRRYCAVHDV--GRAINAFYAYKR 131 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--------~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~ 131 (481)
.+....+.+-+..|...|.+++|..+-- .|+..+ ....--++..=.+|.+..+. -+.+.-++++.+
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555666666776666644311 011000 00011222233344444332 233333455666
Q ss_pred cCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 132 FKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 132 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
.|-.|+... +...++-.|++.+|-++|.+
T Consensus 629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 629 RGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred cCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 665566543 34455666777777777753
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=4.3 Score=35.38 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHH
Q 042941 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHK 226 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 226 (481)
.....|++.+|..+|.......+.+...--.+..+|. ..|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556677777777776654444445566666777777 777777777777776654222222222223333444444333
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcC
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK--GVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g 292 (481)
...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 33333333321 235555556666777777777777666555443 222 4444455555555544
No 256
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=5.6 Score=36.41 Aligned_cols=252 Identities=12% Similarity=0.008 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 042941 45 WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAIN 124 (481)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~ 124 (481)
+..|+..+....... +.+..-|..-...+...|++++|.-=.+.-.+. +|.. ...+...-+.+...++..+|..
T Consensus 65 Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~--~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGF--SKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCc--cccccchhhhhhhhHHHHHHHH
Confidence 345555555554322 234555666666666666666666555443332 2221 2233333333333344444433
Q ss_pred HHHH------------H---hhcCC-CCCHHhHHHH-HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 125 AFYA------------Y---KRFKF-AVGIEDFQGL-LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 125 ~~~~------------~---~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.++. . ..... +|.-.++..+ ..++.-.++.++|.++--.+....+.+......--.++. -.+
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~ 217 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YND 217 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-ccc
Confidence 3321 1 11111 1222333322 245667778887777665433322222222222222333 467
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhH-------------HHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSF-------------SCIISCYSKARNLHKVLRLFDQMKRMG---IECDRKVYNAVIH 251 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~-------------~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~ 251 (481)
+.+.+...|++-...+ |+...- ..=.+-..+.|++..|.+.|.+.+..+ ..|+...|.....
T Consensus 218 ~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 218 NADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred chHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 7888888888777653 333221 111233567889999999999888653 4566777877888
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL--IKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+..+.|+.++|+.--+...+.. +......+ ..++...++|++|.+-|++..+..
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999998888887651 22222222 234555688888888888876653
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.40 E-value=6 Score=35.96 Aligned_cols=294 Identities=14% Similarity=0.100 Sum_probs=164.6
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH--HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 105 TLLILIRRYCA--VHDVGRAINAFYAYKRFKFAVGIEDFQGLLS--ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 105 ~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
-|..|-.+++. .|+-..|.++-.+..+. +.-|...+..++. +-.-.|+++.|.+-|+.|.........-..-|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 34444444433 45666666665554321 2234444444443 3345688888888888776521111111122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECDRK--VYNAVIHALA--- 254 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~--- 254 (481)
..- +.|..+.|.++-+.....-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 163 eAq-r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 163 EAQ-RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHH-hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 222 677888777777766554222 23456677788888888888888887765532 333332 1122332211
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH-HHH
Q 042941 255 KGRLVKDAISLMKSMEEKGVAPNVVTYN-SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV-FGL 332 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~~ 332 (481)
-..+...|...-.+..+ +.||...-. .-..++.+.|+..++-.+++.+.+....|+. .... .+.+.++. ..-
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gdta~dR 314 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGDTALDR 314 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCCcHHHH
Confidence 12344555555444444 344443322 2345777888888888888888887655543 2222 22233322 222
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 042941 333 LESMRKM-GCQP-TNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALF-LNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 333 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 409 (481)
++...+. .++| +......+..+-...|++..|..--+.... ..|....|..|...-. ..|+-+++...+-+....
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2222211 1233 455666778888889999998887777665 3577778877766543 459999999888887665
No 258
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.37 E-value=0.88 Score=32.30 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
+..+.++.+...++.|++....+.+++|-+.+++..|.++|+.++..+.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455556666666677777777777777777777777777777665544433335555444
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.35 E-value=0.24 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998854
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.33 E-value=0.27 Score=29.05 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l 109 (481)
.++..+...|.+.|++++|.++|++..+. ++.++..+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~----~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL----DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCCHHHHHHh
Confidence 35666777777788888888888877776 33345555544
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=1.4 Score=40.07 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
++.+.-++.+.+++..|++.-+......++|......-..++. ..|+++.|...|+.+.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHh
Confidence 3445555555555555555555544444455555555555555 566666666666665554
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.03 E-value=3.8 Score=32.59 Aligned_cols=137 Identities=10% Similarity=-0.074 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-HHHHHHHHHcCCChhhHHHHHhhccCC-CCCchH---hHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-FQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTK---SFNI 177 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~ 177 (481)
...|...+. +++.+..++|+..|..+.+.|...-+.. ...........|+...|...|+++... ..|-.. .--.
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 556666665 4567889999999999998876544432 223445677889999999999886432 112211 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 241 (481)
-.-.+. ..|.++....-++-+...+-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 138 aa~lLv-D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLV-DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHh-ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 122344 789999999988888777666666677788888899999999999999887643333
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=3.9 Score=36.27 Aligned_cols=152 Identities=8% Similarity=-0.074 Sum_probs=95.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhH----HHHHHHHHHhcCCH
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSF----NIILNGWCNIIGSS 189 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 189 (481)
...|++.+|-..++++++. .+.|.-.++..-++|.-.|+.+.-...++++.....+|...| .++.-++. ..|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-Hhccc
Confidence 3457777777777777753 345666777777788888887777777777554433444222 23333444 77888
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---GIECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
++|++.-++..+.+.. |.-.-.++...+-..|++.++.++..+-... +--.-.+-|-...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777766433 5556667777777788888888776654321 11111233333444566668888888888
Q ss_pred HH
Q 042941 267 KS 268 (481)
Q Consensus 267 ~~ 268 (481)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
No 264
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.96 E-value=3.4 Score=37.70 Aligned_cols=228 Identities=12% Similarity=0.022 Sum_probs=121.7
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh--h--cCCC-CCHHhHHHHHHHH
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK--R--FKFA-VGIEDFQGLLSAL 148 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~ll~~~ 148 (481)
-+++.|+...-..+|+...+.|...-..-..+|..|..+|.-.+++++|++....=. . .|-+ -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467888888888888888777643211123456677777777788888877643211 0 1100 0111222233334
Q ss_pred HcCCChhhHHHHHhh-------ccCCCCCchHhHHHHHHHHHHhcC--------------------CHHHHHHHHHHHH-
Q 042941 149 CRYKNVQDAEHLMFC-------NKDVFPFNTKSFNIILNGWCNIIG--------------------SSREAERVWMEMS- 200 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~~a~~~~~~~~- 200 (481)
--.|.+++|.-+-.+ +...+. ....+.-+...|. ..| .++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYh-akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYH-AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhh-hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 444555555433211 111111 1112222223332 111 1233444443211
Q ss_pred ---hcCCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 201 ---QRGIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMK----RMGIE-CDRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 201 ---~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
+.|-. .-...|..|.+.|.-.|+++.|+...+.-. +.|.+ .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11110 112345666666777789999987765432 23322 2345678888999999999999999886542
Q ss_pred ----cCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 272 ----KGV-APNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 272 ----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
.|- .....+.-+|-.+|.-..++.+|+.++..
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 221 22344566677777777788888887764
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=92.95 E-value=8.1 Score=36.24 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=76.8
Q ss_pred hhhHHHHHhhcc---CCCCCchHhHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 154 VQDAEHLMFCNK---DVFPFNTKSFNIILNGWCNI--------IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 154 ~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+.|..+|.+.. ...|.....|..+..++... .....+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 456777777754 32222344444443333311 22334555555555555433 6666666666666677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN-VVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
+++.+..+|++....+ +-...+|....-.+.-.|+.++|.+.+++..+..+..- .......+..|+.. ..+.|..+|
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7777777777777653 22334444444455567777777777777655432111 11222233345443 345555554
Q ss_pred H
Q 042941 302 D 302 (481)
Q Consensus 302 ~ 302 (481)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=6.5 Score=34.93 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=109.8
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHhH--HHHHHHHHhcCCHH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSF--SCIISCYSKARNLH 225 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~--~~ll~~~~~~~~~~ 225 (481)
-..|+..+|....+++...+|.|...++-.=.++. -.|+.......++++... +....-.+| ..+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34577777777788877778889888888888888 889999988888887654 222222233 34445667889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK---GVAPNVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+|++.-++..+.+ +.|.-.-.+....+...|++.++.+...+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988875 567777788888899999999999887654432 100011223333344567799999999998
Q ss_pred H
Q 042941 303 E 303 (481)
Q Consensus 303 ~ 303 (481)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.53 E-value=4 Score=31.62 Aligned_cols=42 Identities=10% Similarity=-0.064 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
++..+. ..+.......+++.+...+. .+....+.++..|++.
T Consensus 13 vv~~~~-~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFE-KRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHH-hCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 334443 44445555555555444432 3444444555555443
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.47 E-value=3.6 Score=30.93 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHHhcCC
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL---IKPLCKARK 293 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~ 293 (481)
+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+..-..+.....+. -..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566778888888887776652 456677888888888888888888777777654221122222222 224455677
Q ss_pred HHHHHHHHHHHHHCC
Q 042941 294 LDEARQAFDEMLQRG 308 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~ 308 (481)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.46 E-value=7.6 Score=34.65 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
++.+.+++.+.+.|..-+..+|-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHH
Confidence 445566777777776666655544
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.29 E-value=3.8 Score=30.81 Aligned_cols=91 Identities=15% Similarity=0.041 Sum_probs=51.4
Q ss_pred HHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH---hHHHHHHHHHhcCC
Q 042941 147 ALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVV---SFSCIISCYSKARN 223 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~~~ 223 (481)
++...|+.+.|++.|.+.....|.....||.-..++- -.|+.++|++=+++..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556666666666666655445556666666666666 6666666666666555432111222 22222234555666
Q ss_pred HHHHHHHHHHHHHcC
Q 042941 224 LHKVLRLFDQMKRMG 238 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~ 238 (481)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665555
No 271
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.08 E-value=2 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 119 VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
.=++.+.++.+...++.|++....+.+++|-+.+++..|.++|+.++..+..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 33455555566666666777777777777777777777777776655433333334444433
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.99 E-value=6.7 Score=33.03 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH-H
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRF-KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN-G 181 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~ 181 (481)
..+......+...+++..+...+...... ........+......+...+++..+...+.......+.+......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444445555555555555555554431 112233344444445555555555555555433321111112222222 4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC--cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 042941 182 WCNIIGSSREAERVWMEMSQRGI--CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC-DRKVYNAVIHALAKGRL 258 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 258 (481)
+. ..|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 140 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LY-ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 55 66777777777776644211 0122233333334556677777777777776653 22 35666667777777777
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777665222 1233333334444556677777777666554
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.84 E-value=4 Score=33.18 Aligned_cols=101 Identities=6% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HH--H
Q 042941 346 DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR--SSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT-DE--L 420 (481)
Q Consensus 346 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~--~ 420 (481)
..+..+...|++.|+.+.|.+.+.++.+....+.. .++-.+|......|++..+...+.+....--.++... -+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788999999999999999999999986555443 3677889999999999999999888766533333222 22 1
Q ss_pred HHH--HHhhhhHHHHHHHHHhhcCccCC
Q 042941 421 LQD--WSYNKQFVERQIASLKAHQPQSG 446 (481)
Q Consensus 421 l~~--~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
+.. .+...+....+.+.+.+..+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 222 12355777788888888887654
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.74 E-value=8.9 Score=34.51 Aligned_cols=234 Identities=9% Similarity=-0.007 Sum_probs=132.0
Q ss_pred HHHHHHHHh-hcCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHH----HhcCCCCCCcccHHHH
Q 042941 33 LVSEVLSWV-RNDWEAAFTFFLWAGKQSG-YAHSTREYHTMIAILGKVRKFDTAWALIDE----MRGGETGPSLVTKQTL 106 (481)
Q Consensus 33 ~~~~~l~~~-~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~~~~~ 106 (481)
....-+..+ .++.+.|+..+.....+.. ...-..+|..+..+.++.|.+++++..--. ..+. .....--.+|
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~ 86 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAY 86 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333333434 3556666666555543321 112356788888889999988876553222 1111 0011113455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC---CHHhHHHHHHHHHcCCChhhHHHHHhhccC------CCCCchHhHH
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRF-KFAV---GIEDFQGLLSALCRYKNVQDAEHLMFCNKD------VFPFNTKSFN 176 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~ 176 (481)
..+.+++-+..++.+++.+-+.-... |..| .-....++..++...+.++++++.|+.... .......++-
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 56666666666677777666654432 1112 112344566788888888888888876311 1122345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----cCCcccHH-hHH-----HHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQ----RGICYDVV-SFS-----CIISCYSKARNLHKVLRLFDQMKR----MGIEC- 241 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~-~~~-----~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~- 241 (481)
.+-..|. +..++++|.-+.....+ .++. |.. -|. .+.-++...|...+|.+.-++..+ .|..+
T Consensus 167 ~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 167 SLGSLFA-QLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 8888888 88888888766554332 2332 221 122 233355667777777666665543 34222
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 242 DRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
.......+.+.|-..|+.+.|..-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233456677888899888887777653
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.65 E-value=9.2 Score=33.89 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 245 VYNAVIHALAKGRLVK---DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD 321 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 321 (481)
+...++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+.+.+++..|...-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4556666666666544 444555555443222 2334444455555577777777777777765221 2233333333
Q ss_pred HHh---c--hhHHHHHHHHHHHcCCCCCHH-HHH-HHHH---HHHhcCC------hhHHHHHHHHHHH-CCCCCCHHHHH
Q 042941 322 IIR---T--GEEVFGLLESMRKMGCQPTND-TYI-MLIK---KFSRWRQ------FGNVFKVWNEISE-NGNGPDRSSYT 384 (481)
Q Consensus 322 ~~~---~--~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~---~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~~ 384 (481)
.+. . .+.+...+..+....+.|... ... .++. ...+.++ ++...++++.+.+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 331 1 123344444444333344432 111 1111 1122111 4444455554333 22223333322
Q ss_pred ---HH----HHHHHhcCCHHHHHHHHHHHH
Q 042941 385 ---AL----IHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 385 ---~l----~~~~~~~g~~~~A~~~~~~m~ 407 (481)
++ ...+.+.+++++|.+.|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 234667899999999988543
No 276
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=2.9 Score=36.60 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=64.4
Q ss_pred CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCC----CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 042941 133 KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF----PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV 208 (481)
Q Consensus 133 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 208 (481)
|.+....+...++.......+++.++..+-.++... .|+. +-..+++.+. .-++++++.++..=.+.|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll--ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL--KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH--ccChHHHHHHHhCcchhccccch
Confidence 444455555556666666667777777776655431 1221 1222333332 45566777777777777888888
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
++++.+|+.+.+.+++.+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888777777666554
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.29 E-value=0.67 Score=25.30 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777888888877777765
No 278
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.15 E-value=9.8 Score=33.27 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=65.3
Q ss_pred hcCCHHHHHHHHHHHHh-cCCcccHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChH
Q 042941 185 IIGSSREAERVWMEMSQ-RGICYDVVSFSCIISCYSK-AR-NLHKVLRLFDQMKR-MGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
+.....+|+++|+.... ..+--|......+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34445566666653221 1223355555555544433 11 22233333333333 233566666777777777777777
Q ss_pred HHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 261 DAISLMKSMEEK-GVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 261 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
+-.++++..... +..-|...|..+|......|+..-...+..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777777666544 4555777777777777777777666665553
No 279
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.91 E-value=10 Score=33.12 Aligned_cols=115 Identities=12% Similarity=0.235 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHhch-----hHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHH
Q 042941 311 PTIRTYHAFLDIIRTG-----EEVFGLLESMRKM-GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN-GNGPDRSSY 383 (481)
Q Consensus 311 p~~~~~~~li~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 383 (481)
-|......+++..... ....++.+.+... +-.++..+...++..++..+++.+-.++|+..... +..-|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 3455555555544331 1124445544433 45778888999999999999999999999988765 666788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHhHHHHHHHHH
Q 042941 384 TALIHALFLNGKLEEAHQYYME-----MKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~l~~~~ 425 (481)
..+|......|+..-..++.++ +...++..++..-..+-+.+
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 9999999999999888877765 23345666665555544444
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.71 E-value=0.5 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.223 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 042941 106 LLILIRRYCAVHDVGRAINAFYA 128 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~ 128 (481)
|..|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555544
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.67 E-value=14 Score=34.35 Aligned_cols=129 Identities=12% Similarity=0.138 Sum_probs=69.1
Q ss_pred HHhHHHHHHHHHcCCChhhHHHHHhhccC-C-CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH-HHH
Q 042941 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKD-V-FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF-SCI 214 (481)
Q Consensus 138 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l 214 (481)
..+|...++...+...++.|..+|-+++. + ..+++..++++|..++ .|+...|..+|+.-... -||...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~--~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA--TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh--cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34455566666666666666666655432 2 3455666666666655 46666666666543322 1233322 334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
+..+...++-..|..+|+..... +..+ ...|..+|.--..-|+...+..+=+.+..
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 45555666666666666643332 1112 34566666666666666666655555554
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.40 E-value=7.5 Score=30.66 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=10.1
Q ss_pred hccCChhHHHHHHHHHhcC
Q 042941 76 GKVRKFDTAWALIDEMRGG 94 (481)
Q Consensus 76 ~~~g~~~~a~~~~~~~~~~ 94 (481)
.+.|++.+|..+|+++.+.
T Consensus 55 i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHhCCHHHHHHHHHHHhcc
Confidence 3455555555555555443
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=11 Score=32.04 Aligned_cols=176 Identities=10% Similarity=0.055 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
..|.....+|...+++++|...+.+..+ +...+...|. ....++.|.-+.+++.. .+.-...|+.....|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~k-lsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSK-LSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 3455555667777777777776666542 1122222111 11233444444443332 2223445666666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHcCCC
Q 042941 184 NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---G--IECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~ 258 (481)
.+|.++.|-..+++.-+. ....++++|+++|++.... + ..--...+...-..+.+...
T Consensus 103 -E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 -ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred -HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 777777766666654332 2334455666666554321 1 01112234445556667777
Q ss_pred hHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 259 VKDAISLMKSMEEK----GVAPNV-VTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 259 ~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+++|-..|.+-... .--++. ..|-..|-.|.-..++..|...++.--
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 77666555443211 011111 224444455556678888888887643
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.87 E-value=1 Score=24.38 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.|..+...+.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777777777777777777665
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.83 E-value=16 Score=33.60 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP---DRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
....++..+...+.+.|.++.|...+.++...+..+ .+.....-...+...|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678889999999999999999999988754211 344455567778889999999999988877
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.75 E-value=9 Score=30.61 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 127 YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 127 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
+.+.+.+++|+...+..+++.+.+.|++....+++
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445556666666666666666666655555444
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.71 E-value=44 Score=38.44 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------Hh
Q 042941 345 NDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE--------PK 416 (481)
Q Consensus 345 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~~ 416 (481)
..+|....+..-.+|+++.|...+-...+.+ -+..+--...-....|+...|+.++++-.+.. .|+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~-~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN-FPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh-cccccCCccccch
Confidence 4567777777788999999988877776654 23345566777889999999999999887652 222 22
Q ss_pred HHHHHH---------HHHh-----hhhHHHHHHHHHhhcCccCCCCccccccccccc
Q 042941 417 TDELLQ---------DWSY-----NKQFVERQIASLKAHQPQSGQNTRVISKKSDQD 459 (481)
Q Consensus 417 ~~~~l~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 459 (481)
.-+..+ .+.. ...+..+....+.+..|...+.+..++..|.+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 222221 1111 224444677788888888888888888665443
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.31 E-value=3.2 Score=29.27 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
++.+-++.+...++.|++....+.+++|-+.+++..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555554
No 289
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.25 E-value=5.9 Score=35.57 Aligned_cols=122 Identities=13% Similarity=0.149 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHhcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HcC-CCCCHHHHHHHHHHHHcCC
Q 042941 185 IIGSSREAERVWMEMSQRG--ICYDVVSFSCIISCYSKARNLHKVLRLFDQMK----RMG-IECDRKVYNAVIHALAKGR 257 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~g 257 (481)
...+.++|+..+......- ...--.+|..+..+.++.|.+++++..--.-. +.. -..-...|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666555443320 00112345556667777777776655322111 110 0011234444555555555
Q ss_pred ChHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 258 LVKDAISLMKSMEEK-GVAP---NVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 258 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
++.+++.+-..-... |..| ......++-.+..-.+.++++++.|+...+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 555555555443322 2222 112233455666667778888888877654
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.95 E-value=12 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=56.2
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCCHHhHHHHHHHHHcC
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF---KFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~ 151 (481)
+++.|+ +.|...|-.+...+.--+ +.....+...|. ..+.++++.++....+. +-.+|+..+.+|...+.+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t---~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELET---AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCC---HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 344454 678888888877654433 666666666665 56788888888877642 3357788888899999888
Q ss_pred CChhhHH
Q 042941 152 KNVQDAE 158 (481)
Q Consensus 152 ~~~~~a~ 158 (481)
++++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 8888774
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.93 E-value=21 Score=33.84 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNG-PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
+-..+..++-+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+--+- ..|...+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAt 331 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSAT 331 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHH
Confidence 3345666777899999999999999764322 24447778999999999999999999886432 2344443
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.81 E-value=10 Score=29.95 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q 042941 185 IIGSSREAERVWMEMSQ 201 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~ 201 (481)
..|+|.+|.++|+.+..
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 44444444444444433
No 293
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.59 E-value=13 Score=30.94 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI-SPTIRTYHAFLD 321 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~ 321 (481)
+.+||-+.--+...|+++.|.+.|+...+..+.-+-...|.-|. +.-.|++..|.+-+-+.-+.+. .|=...|-.++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34566666666666777777777776666543322222222222 2234666666655555444332 222233333333
Q ss_pred HHhchhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcC
Q 042941 322 IIRTGEEV-FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG------PDRSSYTALIHALFLNG 394 (481)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 394 (481)
.-.+..++ ..+.++..+ .+..-|...|-.|. .|++. ...+++++....-. .-..+|-.+.+-+...|
T Consensus 178 ~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 32222222 222222221 22233332222221 11211 11222222221000 11347778888889999
Q ss_pred CHHHHHHHHHHHHHCC
Q 042941 395 KLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 395 ~~~~A~~~~~~m~~~~ 410 (481)
+.++|..+|+-.+...
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999876543
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.56 E-value=1.9 Score=37.74 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC---CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 042941 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE---TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA 135 (481)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (481)
.|.+.+..+-...+..-....+++.++..+-.+.... ..|+ -+..+ .++.+ -.-++++++.++..=...|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~---~irll-lky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHT---WIRLL-LKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHH---HHHHH-HccChHHHHHHHhCcchhccc
Confidence 4556666777777777777788888888887776531 1111 01122 22222 234566777777777777888
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
||..+++.+|+.+.+.+++.+|.++...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888888888888888887777776654
No 295
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.50 E-value=23 Score=33.65 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHcCCChhhHHHHHhhccC
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 166 (481)
..+...+.+.|+.++|++.++++.+..... .......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345556667788888888888877543221 233555677888888888888888777544
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.38 E-value=1.5 Score=25.07 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 380 RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888888654
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.92 E-value=0.61 Score=25.66 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a 122 (481)
+.+|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444444
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.31 E-value=19 Score=31.46 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
+++...+.|..+|.+.+|..+.+.....+ +.+...+-.++..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34555677888888888888888887765 6677778888888888888777777666664
No 299
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.63 E-value=26 Score=32.16 Aligned_cols=310 Identities=13% Similarity=0.081 Sum_probs=150.9
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh--ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHH--HHHhcCC
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILG--KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIR--RYCAVHD 118 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~--~~~~~~~ 118 (481)
..+..+-+.|..-.++.| |.++-.++. -.|+-..|.++-.+-.+. +.-| ......++. +..-.|+
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssD---qepLIhlLeAQaal~eG~ 135 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSD---QEPLIHLLEAQAALLEGD 135 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhcc---chHHHHHHHHHHHHhcCc
Confidence 455566666665543333 444444443 345666666655543221 1112 233333333 2334577
Q ss_pred HHHHHHHHHHHhhcCCCCCHHh--HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 119 VGRAINAFYAYKRFKFAVGIED--FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
.+.|.+-|+.|.. .|.... +..|.-...+.|+.+.|.+.-+.....-+.-...+...+...| ..|+|+.|++++
T Consensus 136 ~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLv 211 (531)
T COG3898 136 YEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLV 211 (531)
T ss_pred hHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHH
Confidence 7777777777764 122221 2233334455666666666666554444445566667777777 777777777777
Q ss_pred HHHHhcC-CcccHH--hHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHH
Q 042941 197 MEMSQRG-ICYDVV--SFSCIISCYS---KARNLHKVLRLFDQMKRMGIECDRKV-YNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 197 ~~~~~~g-~~~~~~--~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
+.-.... +.++.. .-..|+.+-. -.-+...|...-.+..+. .||... -..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 6554432 223322 1122222111 112344555554444443 344322 222345677777777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHhchhHHHHHHHHHHH-cCCCCCHH
Q 042941 270 EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR-GISPT-IRTYHAFLDIIRTGEEVFGLLESMRK-MGCQPTND 346 (481)
Q Consensus 270 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~-~~~~~~~~ 346 (481)
-+..+.|+.. .+..+.+.|+ .+..=++...+. .++|| ..+...+..+--..++....-..... ....|...
T Consensus 290 WK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 290 WKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred HhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence 7765554432 2222333443 333333332211 12233 22223333332222222111111110 12367777
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHHCC
Q 042941 347 TYIMLIKKF-SRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 347 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~ 375 (481)
.|..|.+.- ...|+-+++...+.+..+..
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 777776655 34588888888888887753
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.51 E-value=41 Score=34.45 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=97.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHcCCChHHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRMGIECDR-------KVYNAVIH-ALAKGRLVKDAISLMKSMEEK----GVAPNVVTYNSLIK 286 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 286 (481)
....++++|..++.++...=..|+. ..++.+-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3466788888888777654212221 12333221 234567888888877766543 22334555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---H--HhchhHH-----HHHHHHHHHc---CC---CCCHHHHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD---I--IRTGEEV-----FGLLESMRKM---GC---QPTNDTYIM 350 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~---~--~~~~~~~-----~~~~~~~~~~---~~---~~~~~~~~~ 350 (481)
+..-.|++++|..+..+..+..-.-+...+..... + +...|++ ...+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778899999888887655433334433332222 1 1122221 1111111111 11 122344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEIS----ENGNGPDRSSY--TALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
++.++.+ ++.+..-...-. .....|-...+ ..|+......|+.++|...++++....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6666655 333332222221 22222222222 256778888999999999888877653
No 301
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=86.16 E-value=20 Score=30.36 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CC-----------CCCCHHHHHHHHHHHHhcCCHH
Q 042941 330 FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-NG-----------NGPDRSSYTALIHALFLNGKLE 397 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-----------~~~~~~~~~~l~~~~~~~g~~~ 397 (481)
.++.+-....+++.+.....+++ +...|+..+|+..++.-.. .| -.|.+.....++..|. .++++
T Consensus 179 ~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~ 255 (333)
T KOG0991|consen 179 KRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNID 255 (333)
T ss_pred HHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHH
Confidence 34444444556666666666665 6677888888887775543 11 1467777777776655 45899
Q ss_pred HHHHHHHHHHHCCCCCCHhHH
Q 042941 398 EAHQYYMEMKEKQLLPEPKTD 418 (481)
Q Consensus 398 ~A~~~~~~m~~~~~~p~~~~~ 418 (481)
+|.+.+.++.+.|+.|....-
T Consensus 256 ~A~~il~~lw~lgysp~Dii~ 276 (333)
T KOG0991|consen 256 EALKILAELWKLGYSPEDIIT 276 (333)
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999988866543
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.01 E-value=41 Score=33.88 Aligned_cols=221 Identities=12% Similarity=0.085 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHh---
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV-APNVVTYNSLIKPLCK--- 290 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~--- 290 (481)
...+.-.|+++.|.+.+-. ..+...|..++.+.+.-|.-.+-.+... ..+..... .|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455668899999888876 2223456666665555443322222211 22221110 1112557788888876
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhchhHHHHHHHHHHHcC---------------CC-CCHHH---HHH
Q 042941 291 ARKLDEARQAFDEMLQRGISPTIRTYHAFLDI-IRTGEEVFGLLESMRKMG---------------CQ-PTNDT---YIM 350 (481)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~~~~~~~~~~---------------~~-~~~~~---~~~ 350 (481)
..++..|.++|--+....-+.....+...+.- ....++...++..+...| +. +.... ...
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 46788888888877665332222223332222 122233333332221111 12 12222 233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC-----------HHHHHHHHHHHHHCCC-----CC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALF-LNGK-----------LEEAHQYYMEMKEKQL-----LP 413 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-----------~~~A~~~~~~m~~~~~-----~p 413 (481)
...-+...|++++|..+|.-..+.+ .-....|.++.-.. .... ...|..+.+.....+. .+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 4445677888999988888765421 11223444443332 2222 3455555555544321 11
Q ss_pred -CHhHHHHHHHH-----HhhhhHHHHHHHHHhhcC
Q 042941 414 -EPKTDELLQDW-----SYNKQFVERQIASLKAHQ 442 (481)
Q Consensus 414 -~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~ 442 (481)
...|+..|+.. +...|..+.+++.+.+..
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 23455555553 346677778887776654
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.94 E-value=33 Score=32.74 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.|....-+++..|+..-.+.-.+.+..+|..-|- + -..|..++..|..+ ..+.-..+++++.+..+. |+..-.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~---kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--S---KMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--h---HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 5777888999999999999999999999988642 3 67888999999888 667888899988887643 444334
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCC------chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHhHHHHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPF------NTKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSFSCII 215 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll 215 (481)
.|..-|-+ ++.+.+...|..+...+-| -...|..+... -..+.+....+...+... |...-...+.-+-
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 45555544 7777777777664332222 22345555543 246667777766666543 4444455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 216 SCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 216 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
.-|....++.+|++++..+.+.+ ..|.-+-..++.-+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 77888899999999999888775 33444444444443
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.88 E-value=15 Score=30.30 Aligned_cols=80 Identities=10% Similarity=0.002 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhc----cCCCCCchHhHHHHHHHHHHhcC
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCN----KDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.+.....-+.|...|-.+...+.--++.....|...|. ..+.+++++++.+. ..+..+|+..+..|...+. +.+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~-~~~ 192 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ-KLK 192 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-Hhc
Confidence 34445456788888888887765556666666666666 67889999988763 2334778999999999999 999
Q ss_pred CHHHHH
Q 042941 188 SSREAE 193 (481)
Q Consensus 188 ~~~~a~ 193 (481)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 998874
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.65 E-value=10 Score=36.67 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=22.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+.|+.+.|.++..+.. +..-|..|.++....+++..|.+.|.+
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 3455555555544321 334455556666666666666555543
No 306
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.84 E-value=22 Score=29.74 Aligned_cols=203 Identities=12% Similarity=0.048 Sum_probs=104.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQR-GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
...+......+. ..+.+..+...+...... ........+......+...+++..+...+.........+ ........
T Consensus 59 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALL-KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHH-HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 344444555555 566666666666555431 112233444455555555666666666666665543222 12222222
Q ss_pred H-HHHcCCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh
Q 042941 251 H-ALAKGRLVKDAISLMKSMEEKGV--APNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE 327 (481)
Q Consensus 251 ~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 327 (481)
. .+...|+++.|...+........ ......+......+...++.+.+...+..........
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 200 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---------------- 200 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc----------------
Confidence 2 56666667777666666644211 0122222223333445566666666666655542110
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 328 EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
....+..+...+...++++.|...+......... ....+..+...+...|..+++...+.+..
T Consensus 201 ----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 201 ----------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred ----------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345555556666666777777777776664211 13334444444446666777777777766
Q ss_pred HC
Q 042941 408 EK 409 (481)
Q Consensus 408 ~~ 409 (481)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 53
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.81 E-value=2.7 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
..+++.+...|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3456666666666666666666666654
No 308
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.74 E-value=4.5 Score=30.09 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI 177 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (481)
..+.++.+...++.|++......+++|-+.+|+..|.++|+.++..+.+....|-.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34445555566667777777777777777777777777777766554444443433
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.51 E-value=17 Score=28.26 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 042941 185 IIGSSREAERVWMEMSQR 202 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~ 202 (481)
..|+|++|.++|+++.+.
T Consensus 56 ~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 56 ARGNYDEAARILRELLSS 73 (153)
T ss_pred HcCCHHHHHHHHHhhhcc
Confidence 444555555555444443
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.39 E-value=0.91 Score=35.39 Aligned_cols=107 Identities=7% Similarity=0.058 Sum_probs=69.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhH
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQF 430 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 430 (481)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..+.+.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5667777888888888888888766556788888999999998877888877761 222333456667777777
Q ss_pred HHHHHHHHhhcCccCCCCccccccccccchhhccCcccc
Q 042941 431 VERQIASLKAHQPQSGQNTRVISKKSDQDREFLQQPETR 469 (481)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r 469 (481)
.+++.-......... .+.. ++...+.+.+|.+.-
T Consensus 86 ~~~a~~Ly~~~~~~~-~al~----i~~~~~~~~~a~e~~ 119 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD-EALE----ILHKLKDYEEAIEYA 119 (143)
T ss_dssp HHHHHHHHHCCTTHT-TCSS----TSSSTHCSCCCTTTG
T ss_pred HHHHHHHHHHcccHH-HHHH----HHHHHccHHHHHHHH
Confidence 777666555533322 1111 245566666666433
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.97 E-value=3.9 Score=22.03 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 381 SSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567778888889999999988888765
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.77 E-value=14 Score=26.55 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042941 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQD 423 (481)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 423 (481)
+..+-++.+...++.|++.+..+.+.+|.|.+++..|.++|+-.+.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666666666777788888888888888888888888888777665 2233335555544
No 313
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.39 E-value=25 Score=30.64 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHH-HHHHHcCCChHHHHHHHHHHHHc----CCCCChhhHH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQ----MKRMGIECDRKVYNAV-IHALAKGRLVKDAISLMKSMEEK----GVAPNVVTYN 282 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 282 (481)
..++..+.+.|.+.+|+.+.+. +.+.+.+|+..+...+ -.+|-...++.++..-+...+.. -.+|-...--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3467788999999999887654 4455556655444332 23444445555554444433321 1222222222
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHHHH
Q 042941 283 SLIKPL--CKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 283 ~li~~~--~~~g~~~~a~~~~~~m~~ 306 (481)
-++++. |.-.++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 233322 234456666666665544
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.08 E-value=4.2 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
+|..+...+...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666655554
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.76 E-value=44 Score=31.61 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=71.5
Q ss_pred HHhcCCHHHHHHHH-HHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 113 YCAVHDVGRAINAF-YAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 113 ~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
....|+...|-+-+ ..+....-.|+... ..-..+...|+++.+.+.+............+...+++... +.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~-~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLH-GLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhh-chhhHHH
Confidence 33446655554333 33333222233322 22334556788888887776655444556667777787777 7888888
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
|...-..|....+. +...........-..|-++++...++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888877776655 33333322233344566777777777776554
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.77 E-value=9.2 Score=31.82 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
..++.+.+.+...+++.+.+.-.+. .+.+...-..++..+|-.|++++|..-++-.-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444555555555555555554443 22223444455555555666666555554443
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.29 E-value=0.59 Score=36.47 Aligned_cols=84 Identities=11% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3444555556666666666666554444566666666666666665555555551 112223345555555555
Q ss_pred HHHHHHHHHHH
Q 042941 294 LDEARQAFDEM 304 (481)
Q Consensus 294 ~~~a~~~~~~m 304 (481)
++++.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555543
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.83 E-value=1.2e+02 Score=35.33 Aligned_cols=152 Identities=11% Similarity=0.007 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFA--VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
.+..+-.+.+.+..|...++.-.....+ .....+-.+...|..-+++|....+..... .+...++.++. .. .
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~sl~~qil~-~e-~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADPSLYQQILE-HE-A 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCccHHHHHHH-HH-h
Confidence 4445556677788888888774211111 112234445558888888888777665311 12333443333 23 5
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcCCChHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNA-VIHALAKGRLVKDAIS 264 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~ 264 (481)
.|++..|...|+.+.+.+.+ ...+++-++..-...|.++.+....+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 78888888888888876322 35567767776667777777777665555432 233333332 2334456666666655
Q ss_pred HHH
Q 042941 265 LMK 267 (481)
Q Consensus 265 ~~~ 267 (481)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.63 E-value=49 Score=32.37 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
.+.+...+-+.|..++|+.+- +|..-. ..... +.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s--------~D~d~r---Felal-~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS--------TDPDQR---FELAL-KLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC--------CChhhh---hhhhh-hcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 345666666777777776543 222211 12223 6778888777765543 55668888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 8888888877765443 345666677777766655555555555432 3344456677888888877
Q ss_pred HHHH
Q 042941 301 FDEM 304 (481)
Q Consensus 301 ~~~m 304 (481)
+..-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7543
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.54 E-value=5.8 Score=21.24 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.+..+...+...|++++|+..|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444555556666666666666665554
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.53 E-value=40 Score=29.66 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHhHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK-----QLLPEPKTD 418 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~ 418 (481)
+++...+.|..+|.+.+|.++.++....+ +.+...|-.|+..+...|+--+|.+-++++.+. |+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 56677888999999999999999998864 347778889999999999988888887776442 666655543
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.30 E-value=3 Score=21.14 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 042941 385 ALIHALFLNGKLEEAHQYYM 404 (481)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~ 404 (481)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555566666666665543
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.22 E-value=13 Score=31.07 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=24.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
.+..+.+.+...+++...+.-++.. +-|..+-..+++.+|-.|++++|..-+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHH
Confidence 3344444555555555555444432 123334444555555555555554444
No 324
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.05 E-value=67 Score=31.38 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=30.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 355 FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHAL-FLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
....|+.+-|..++....+--.+-.+. ...+-..+ -..|+++.|..+++...+.- |+.+
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v 400 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVKKTPI-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLV 400 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cchh
Confidence 334466666666666555532222222 12222222 24567777877777777653 5443
No 325
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.85 E-value=37 Score=29.65 Aligned_cols=87 Identities=14% Similarity=0.016 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK--- 255 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 255 (481)
|.+++ ..++|.++....-+--+.--+.........|-.|++.+.+..+.++-....+.--.-+...|.++...|..
T Consensus 90 IQALA-EmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALA-EMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHH-HHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 45555 55555555554443333222223333444444455666665555555554442111122224444443332
Q ss_pred --CCChHHHHHHH
Q 042941 256 --GRLVKDAISLM 266 (481)
Q Consensus 256 --~g~~~~a~~~~ 266 (481)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 45555555544
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.83 E-value=8.4 Score=26.08 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=32.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 357 RWRQFGNVFKVWNEISENGNGPD--RSSYTALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 403 (481)
...+.++|+..|....+.-..|. ..+...++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888776433322 225667788888888888877654
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.74 E-value=4.7 Score=23.80 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042941 386 LIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555555555555555553
No 328
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.47 E-value=35 Score=32.32 Aligned_cols=181 Identities=13% Similarity=0.052 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHH--hHHHHHHHHHcCCChhhHHHHHhhccCC-CCCchHhHHHHHHHHHHhc
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIE--DFQGLLSALCRYKNVQDAEHLMFCNKDV-FPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 186 (481)
+...+..|+.+-+.-+ .+.|..|+.. .....+...+..|+.+.+..+++.-... ...+....+.+ ...+ ..
T Consensus 39 L~~A~~~~~~~~v~~L----l~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~-~~ 112 (413)
T PHA02875 39 IKLAMKFRDSEAIKLL----MKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL-HLAT-IL 112 (413)
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH-HHHH-Hh
Confidence 3344455665543333 3344433321 1122344555667777766666542211 00111112222 2233 45
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCChHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVS--FSCIISCYSKARNLHKVLRLFDQMKRMGIECD---RKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 261 (481)
|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+ .+.|..++ ....+.+. ..+..|+.+
T Consensus 113 ~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~TpL~-~A~~~g~~e- 182 (413)
T PHA02875 113 KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCTPLI-IAMAKGDIA- 182 (413)
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCCHHH-HHHHcCCHH-
Confidence 6654 3344445555544321 12234444566665544333 33443222 22222332 334445544
Q ss_pred HHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 262 AISLMKSMEEKGVAPNVVT---YNSLIKPLCKARKLDEARQAFDEMLQRGISPTI 313 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 313 (481)
+.+.+.+.|..++... ..+.+...+..|+.+ +.+.+.+.|..++.
T Consensus 183 ---iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 183 ---ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred ---HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 4444556666554432 123444344556654 34444555655543
No 329
>PRK14135 recX recombination regulator RecX; Provisional
Probab=78.43 E-value=46 Score=29.19 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=10.7
Q ss_pred Cccccchhccccccc
Q 042941 465 QPETRRVVRHQGFSF 479 (481)
Q Consensus 465 a~~~r~~~~~~~~~~ 479 (481)
-.++.+.+..+||||
T Consensus 235 k~K~~~~L~rrGF~~ 249 (263)
T PRK14135 235 KQKLKQALYRKGFSY 249 (263)
T ss_pred HHHHHHHHHHCCCCH
Confidence 346666777888886
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.71 E-value=85 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~ 119 (481)
...+..+|..+.-.|++++|-...-.|... + ...|..-+..+...++.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~---~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGN----N---AAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcc----h---HHHHHHHHHHhcccccc
Confidence 445556666666666666666666666554 3 44555555555444443
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.59 E-value=79 Score=31.43 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCChHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSK-ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA--KGRLVKDAIS 264 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~ 264 (481)
+.+.|..++....+.|.+ +...+-..+..... ..+...|.++|...-+.|.. +..-+.+++.... -..+...|..
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 445566666655555433 32222222211111 23456666666666666631 1111111111111 2235666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 265 LMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
.+.+.-+.| .|....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 666666665 2222222222333333 666666666666655543
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.38 E-value=6.6 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666554
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.34 E-value=5.7 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 384 TALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
-.+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777888888888888888764
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.72 E-value=9.7 Score=20.40 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 246 YNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=74.46 E-value=1.3e+02 Score=32.34 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=79.4
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN---IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
-.++.--+.|-+.+|+.++ .|+...+.....+|+. ....+++|.-.|+..-+ ....+.+|-
T Consensus 913 e~~n~I~kh~Ly~~aL~ly-------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~ 976 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY-------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYK 976 (1265)
T ss_pred HHHHHHHhcccchhhhhee-------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHH
Confidence 3344444455555555443 4566555555544431 45666666666654432 133566777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKV--YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
..|++.+|+.+..++... -+... -..|+.-+...+++-+|-++..+.... ..-.+..|++...+++|
T Consensus 977 ~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEA 1045 (1265)
T ss_pred HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHH
Confidence 888888888887766532 12222 245777777888888888777776543 12344556666677777
Q ss_pred HHHHHHHH
Q 042941 298 RQAFDEML 305 (481)
Q Consensus 298 ~~~~~~m~ 305 (481)
.++-..-.
T Consensus 1046 lrva~~~~ 1053 (1265)
T KOG1920|consen 1046 LRVASKAK 1053 (1265)
T ss_pred HHHHHhcc
Confidence 77665443
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=74.45 E-value=15 Score=32.92 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=24.5
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
|.+.|.+++|+.+|.......|.+.+++.--..+|. +...+..|+.-.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhH
Confidence 555555555555555544434445555555555555 555555444333
No 337
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.31 E-value=8.5 Score=24.77 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.++...++++.++.. .-|..-.-.+|.+|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555442 13555566778899999999999998888764
No 338
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.08 E-value=17 Score=21.93 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=16.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 042941 391 FLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ 422 (481)
Q Consensus 391 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 422 (481)
.+.|-.+++..++++|.+.|+..++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444555555555555555555555444443
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.86 E-value=1.1e+02 Score=30.88 Aligned_cols=51 Identities=6% Similarity=-0.026 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA--VHDVGRAINAFYAY 129 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~ 129 (481)
+++..|.+.++.+...-..+......++..++.+... .+..+++++..+.+
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 5666666666665443211111113333334443332 34445555555444
No 340
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.69 E-value=53 Score=27.15 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECD-----RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 291 (481)
-+.+.|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.--....+.++. .....-.-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3566788888888887777652 222 234455556677778888887777777765433 222222334467777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 042941 292 RKLDEARQAFDEMLQRG 308 (481)
Q Consensus 292 g~~~~a~~~~~~m~~~~ 308 (481)
..++.|+.=|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888887764
No 341
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.56 E-value=78 Score=29.00 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=47.7
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC---DRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
...+|..+.+.+.+.|.++.|...+..+...+... ++...-.-.+..-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888888889999999998888887754211 344455556677778888888888887776
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.20 E-value=55 Score=27.08 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=52.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 042941 185 IIGSSREAERVWMEMSQRGICYD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
+.|++++|..-|......-.... ...|..-..++.+.+.++.|++--....+.+ +........-..+|.+..+++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHH
Confidence 67777777777776665522211 1233333445666777777777666666554 223333334455677777788
Q ss_pred HHHHHHHHHHHc
Q 042941 261 DAISLMKSMEEK 272 (481)
Q Consensus 261 ~a~~~~~~~~~~ 272 (481)
.|+.=|..+.+.
T Consensus 186 ealeDyKki~E~ 197 (271)
T KOG4234|consen 186 EALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHh
Confidence 888888877775
No 343
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.88 E-value=38 Score=24.65 Aligned_cols=80 Identities=13% Similarity=-0.037 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
...++|..+.+.+...+.. ...+--.-+..+.+.|++++| +..-.....||...|-.+-.. +.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~---klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCAW---KLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHHH---HCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHHH---hhccHHHHHHHH
Confidence 4567777777777765421 111222233456677788777 222233345677777766654 677777777777
Q ss_pred HHHHhcC
Q 042941 197 MEMSQRG 203 (481)
Q Consensus 197 ~~~~~~g 203 (481)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7776554
No 344
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.56 E-value=98 Score=29.29 Aligned_cols=213 Identities=10% Similarity=-0.019 Sum_probs=100.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHh--HHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIED--FQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS 188 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (481)
...+..|+.+.+..++ +.|..|+... -.+.+...+..|+.+-+.-+++.-......+....+. +...+ ..|+
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~-L~~A~-~~g~ 80 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE-LHDAV-EEGD 80 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH-HHHHH-HCCC
Confidence 3345567766655555 4455554322 2234555667788876665554321110111122233 33445 6888
Q ss_pred HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCChHHHHHHH
Q 042941 189 SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV--YNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 189 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~ 266 (481)
.+.+..+++.-....-..+..- .+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~-- 153 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL-- 153 (413)
T ss_pred HHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH--
Confidence 8776665543211100001111 12334445566654 4455556665554321 1234445556777665444
Q ss_pred HHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHH-HHhchhHHHHHHHHHHHc
Q 042941 267 KSMEEKGVAPN---VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY---HAFLD-IIRTGEEVFGLLESMRKM 339 (481)
Q Consensus 267 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li~-~~~~~~~~~~~~~~~~~~ 339 (481)
+.+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..|+...- .+.+. +.. ..-.++.+.+.+.
T Consensus 154 --Ll~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~--~~~~~iv~~Ll~~ 224 (413)
T PHA02875 154 --LIDHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIE--NNKIDIVRLFIKR 224 (413)
T ss_pred --HHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHH--cCCHHHHHHHHHC
Confidence 444554333 22333333 344556654 44555666766554321 12222 221 1224566677777
Q ss_pred CCCCCH
Q 042941 340 GCQPTN 345 (481)
Q Consensus 340 ~~~~~~ 345 (481)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 776664
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.79 E-value=45 Score=25.10 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 364 VFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+-++.+...++.|++.....-+.+|.+-+++..|.++|+-.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555444
No 346
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=69.26 E-value=60 Score=26.29 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=54.7
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHH
Q 042941 5 VDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTA 84 (481)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 84 (481)
+.+|+....+..+|...|.+.+. ++..+..||..|. ..|+..|..--.+.+..-.+.| ..-
T Consensus 27 l~~Ls~R~rse~ELr~kL~k~~~--~~~~Ie~Vi~~l~---------------~~~~ldD~~fAe~~i~~r~~~g--~G~ 87 (174)
T COG2137 27 LRLLSRRDRSEKELRRKLAKKEF--SEEIIEEVIDRLA---------------EEGYLDDTRFAEAYIRSRSRKG--KGP 87 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHH---------------HcCcccHHHHHHHHHHHHHhcc--cCh
Confidence 44555555555666666665554 3333444444431 1222223333333333333333 334
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCCHHhHHHHHHHHHcCC
Q 042941 85 WALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK-FAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~ 152 (481)
..+..++.+.|+. ..+-...+..+......+.|..++..-.... ..|+..-...+.+.+...|
T Consensus 88 ~rl~qeL~qkGi~-----~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 88 ARLKQELKQKGID-----DEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred HHHHHHHHHcCCC-----HHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcC
Confidence 4555566666643 3333444443444444455555544433322 2344333344444444443
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.03 E-value=80 Score=27.70 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=62.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK--- 290 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 290 (481)
=|.+++..+++.+++...-+.-+.--+........-|-.|.+.+.+..+.++-..-.+.--.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36788999999999887665544222233455566667789999999999888877665333345558777776654
Q ss_pred --cCCHHHHHHHH
Q 042941 291 --ARKLDEARQAF 301 (481)
Q Consensus 291 --~g~~~~a~~~~ 301 (481)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 69999999887
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.63 E-value=54 Score=25.54 Aligned_cols=23 Identities=17% Similarity=0.585 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQM 234 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~ 234 (481)
+.++.-....+++.....+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 33333334444444444444443
No 349
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.37 E-value=1e+02 Score=28.78 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--cCCChHHHHHHHHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRMGIECDRK--VYNAVIHALA--KGRLVKDAISLMKSMEE 271 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~~~~ 271 (481)
.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555566666666655554 333332 2233333332 23344455555554443
No 350
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.66 E-value=78 Score=27.02 Aligned_cols=111 Identities=15% Similarity=0.059 Sum_probs=63.0
Q ss_pred hCCCCCCCHHHHHHHHHHHh--ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 042941 57 KQSGYAHSTREYHTMIAILG--KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF 134 (481)
Q Consensus 57 ~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 134 (481)
...++++. |...+.+|. .++++++|.+.+-.- .+.|+ -...++.++...|+.+.|+.+++...-..
T Consensus 71 ~~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~-----~~~~Il~~L~~~~~~~lAL~y~~~~~p~l- 138 (226)
T PF13934_consen 71 RAFGIPPK---YIKFIQGFWLLDHGDFEEALELLSHP---SLIPW-----FPDKILQALLRRGDPKLALRYLRAVGPPL- 138 (226)
T ss_pred HHhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcc-----cHHHHHHHHHHCCChhHHHHHHHhcCCCC-
Confidence 33554333 445555543 457778887777222 22222 22347777777899999998888754221
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
.+......++.+ ..++.+.+|..+-+...... ....+..++..+.
T Consensus 139 -~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 139 -SSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCL 183 (226)
T ss_pred -CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHH
Confidence 223333334444 66688888888776544321 1345666666555
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.37 E-value=27 Score=21.62 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 385 ALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
.+.-++.+.|++++|.++.+.+.+ +.|+..-...|...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 345567788888888888887776 56776655554443
No 352
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.69 E-value=26 Score=21.12 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=28.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 354 KFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIH 388 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 388 (481)
...+.|-++++..++++|.+.|+.-+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567888889999999988998888888877765
No 353
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.34 E-value=1.1e+02 Score=30.87 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
......++.++.. |+...++.+++++...|..+.
T Consensus 251 ~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 251 RSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 3444455555444 778888888888887775543
No 354
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=1e+02 Score=27.87 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=58.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhH-H
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEISEN---GNGPDRSSYT--ALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKT-D 418 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~-~ 418 (481)
.++...-+.++.++|+++++++.+. .-.|+.+.|. .....+...|+.+++.+.+.+..+ -++.|+..+ |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 4445556667889999998888662 2345666554 345567788999999988888776 467775544 3
Q ss_pred HHH-HHHHhhhhHHHHHHHHHh
Q 042941 419 ELL-QDWSYNKQFVERQIASLK 439 (481)
Q Consensus 419 ~~l-~~~~~~~~~~~~~~~~~~ 439 (481)
..+ ..++...+......+...
T Consensus 160 Y~lssqYyk~~~d~a~yYr~~L 181 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYRHAL 181 (380)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 333 345566666665555443
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.23 E-value=23 Score=31.78 Aligned_cols=53 Identities=11% Similarity=-0.101 Sum_probs=28.5
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
-|.++|.+++|++.|..-... ++.++.++..-..+|.+...+..|..-.....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 345566666666666554443 33335555555556666665555554444443
No 356
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.66 E-value=15 Score=32.32 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
+..-|+..|+...+.||+++|+.++++..+.|+.--..+|
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667888999999999999999999999988865434444
No 357
>PLN03025 replication factor C subunit; Provisional
Probab=65.11 E-value=1.1e+02 Score=27.80 Aligned_cols=34 Identities=6% Similarity=0.065 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
......++... ..++++.|...+.++...|..|.
T Consensus 225 ~~~i~~~i~~~-~~~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 225 PLHVKNIVRNC-LKGKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34444444443 34677777777777776665554
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.99 E-value=1.4e+02 Score=28.89 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=55.1
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
|....-+++..++..-...-+..+-.+|...| -+...|-.++.+|..+ ..+.-..+++++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455556666666666666666666666654 3556666677777666 445566666666665443 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~ 306 (481)
-|- .++...+..+|.....
T Consensus 141 ~yE-kik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-HhchhhHHHHHHHHHH
Confidence 333 3666666666666544
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.93 E-value=42 Score=27.72 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=37.0
Q ss_pred hcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 357 RWRQFGNVFKVWNEISE-NGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLP 413 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 413 (481)
..++.+......+.+.+ ....|++.+|..++.++...|+.++|.+...++.. ..|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 44444444443333332 22468888888889999999999999888888875 445
No 360
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=64.32 E-value=87 Score=26.38 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=82.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CChhhHHHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PNVVTYNSLIK 286 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 286 (481)
+..||-+.--+...|+++.|.+.|+...+.+.. ...+...-.-++.-.|++..|.+-|...-+.... |-...|-.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 345677766777788888888888877776421 1222211122233457777777766666554332 1122222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-chhHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHhcC
Q 042941 287 PLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR-TGEEVFGLLESMRKMGCQ------PTNDTYIMLIKKFSRWR 359 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 359 (481)
-..-++.+|..-+.+--+. .|..-|...|-.+- ..-....+++.+....-. .-..||--+.+-+...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233455555433332211 23333333333221 111112233333222110 11346777888899999
Q ss_pred ChhHHHHHHHHHHHCC
Q 042941 360 QFGNVFKVWNEISENG 375 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~ 375 (481)
+.++|..+|.-.....
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999887753
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.30 E-value=15 Score=18.52 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.|..+...+...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 566777888888999999998888765
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.43 E-value=1.7e+02 Score=29.53 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=41.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCC-CCC-----HHHHHHHH--HHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhHH
Q 042941 355 FSRWRQFGNVFKVWNEISENGN-GPD-----RSSYTALI--HALFLNGKLEEAHQYYM--------EMKEKQLLPEPKTD 418 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~--~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~ 418 (481)
.+-.+++..|...+..+.+..- .|+ ...+..++ -.+...|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 4456889999999998876311 111 22233333 33446799999999997 44455555566665
Q ss_pred HHHH
Q 042941 419 ELLQ 422 (481)
Q Consensus 419 ~~l~ 422 (481)
..+-
T Consensus 451 a~LN 454 (608)
T PF10345_consen 451 AALN 454 (608)
T ss_pred HHHH
Confidence 5443
No 363
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.24 E-value=44 Score=31.08 Aligned_cols=59 Identities=12% Similarity=-0.117 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhc
Q 042941 105 TLLILIRRYCAVHDV---GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCN 164 (481)
Q Consensus 105 ~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 164 (481)
+-..++..+...++. -+|..+++...... +.+...--.+++.|...|-...|...|..+
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 344455555444443 34555555555443 234444445667777777777777777664
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.01 E-value=1.4e+02 Score=28.43 Aligned_cols=113 Identities=10% Similarity=0.037 Sum_probs=80.2
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC
Q 042941 15 RSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG 94 (481)
Q Consensus 15 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 94 (481)
..+++..++.....|....+-.++..--++++.+++.+.......+ ....+..++++..-+.|+++.|..+-+-|...
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG--TTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc--CCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3566777777777777777766666656888888888877643333 45677888999999999999999999988876
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 95 ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 95 ~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
.+.. +.......-..-..|-++++...|++....+
T Consensus 387 eie~----~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 387 EIED----EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ccCC----hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 5432 4444333333445577888988888887654
No 365
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.51 E-value=91 Score=30.57 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCC-CCC---------cccHHHHHHHHHHHHh
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGET-GPS---------LVTKQTLLILIRRYCA 115 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~---------~~~~~~~~~li~~~~~ 115 (481)
++....+..+....|+..+......++... .|+...|..+++.+...|- ..+ ..+......++.+. .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 444445555556667777777766665553 5888888888877655431 001 01122223333333 3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC
Q 042941 116 VHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
.|+.+.++.+++.+...|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4677777777777777765543
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.48 E-value=53 Score=23.24 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHhcCChhHHHHHHHHHHH----CCCCCC--HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 042941 355 FSRWRQFGNVFKVWNEISE----NGNGPD--RSSYT--ALIHALFLNGKLEEAHQYYMEMKEK-QLLPEPKTDELLQDWS 425 (481)
Q Consensus 355 ~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~ 425 (481)
..+.|++..|.+.+.+..+ .+..+. ...+. .+.......|++++|...+++.+.. .-.-|..+....+.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4577888888666665544 222221 22222 2344566789999999999997764 2234555555544443
No 367
>PHA03100 ankyrin repeat protein; Provisional
Probab=62.32 E-value=1.5e+02 Score=28.81 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=31.0
Q ss_pred cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCcccHHh--HHHHHHHHHhcCCHH
Q 042941 150 RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG--SSREAERVWMEMSQRGICYDVVS--FSCIISCYSKARNLH 225 (481)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~ 225 (481)
..|+.+-+..+++.-......+....+.+ ...+ ..| +.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L-~~A~-~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSYSIVEYLLDNGANVNIKNSDGENLL-HLYL-ESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChHHHHHHHHHcCCCCCccCCCCCcHH-HHHH-HcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence 66666666666554222112222233333 3334 455 333 3344445555443221 122344455566544
Q ss_pred HH
Q 042941 226 KV 227 (481)
Q Consensus 226 ~a 227 (481)
-+
T Consensus 191 iv 192 (480)
T PHA03100 191 VI 192 (480)
T ss_pred HH
Confidence 33
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.11 E-value=44 Score=32.52 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=46.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 298 (481)
.-.|+...|.+.+.........-.-.....|.....+.|....|..++.+...... ...-++-.+-++|....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHH
Confidence 34566666666555544321111112233344455555566666666665554431 23344555566666667777777
Q ss_pred HHHHHHHHC
Q 042941 299 QAFDEMLQR 307 (481)
Q Consensus 299 ~~~~~m~~~ 307 (481)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 777766554
No 369
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=61.84 E-value=1e+02 Score=32.87 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCC--ChHHHHHHHHHHHHc
Q 042941 244 KVYNAVIHALAKGR--LVKDAISLMKSMEEK 272 (481)
Q Consensus 244 ~~~~~li~~~~~~g--~~~~a~~~~~~~~~~ 272 (481)
.-...++.+|.+.+ +++.|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44556777888777 788888888888765
No 370
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=61.56 E-value=72 Score=32.38 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCC-CC---------cccHHHHHHHHHHHHh
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETG-PS---------LVTKQTLLILIRRYCA 115 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~---------~~~~~~~~~li~~~~~ 115 (481)
++....+..+....|+..+..+...++... .|+...++.+++.+...|-. .+ ..+......++.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 455566666666677777777777776655 58888888888776543210 01 001223334444433
Q ss_pred cCCHHHHHHHHHHHhhcCCCC
Q 042941 116 VHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~ 136 (481)
.++...++.+++.+...|..+
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 477888888888888777543
No 371
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.03 E-value=79 Score=24.77 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=9.4
Q ss_pred HcCCChHHHHHHHHHHHHc
Q 042941 254 AKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~ 272 (481)
...|++++|.++|+.+.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 4445555555555555443
No 372
>PRK09687 putative lyase; Provisional
Probab=60.99 E-value=1.2e+02 Score=26.92 Aligned_cols=234 Identities=10% Similarity=0.008 Sum_probs=134.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH----HHHHHHHHHHhhcCCCCCH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV----GRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 138 (481)
+|.......+..+...|.. .+...+..+... ++ +..-...+.+++..|+. .++...+..+... .++.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d---~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KN---PIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CC---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 4666677777777777753 344444444332 24 55556666777777763 4567777666432 3566
Q ss_pred HhHHHHHHHHHcCCCh-----hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 139 EDFQGLLSALCRYKNV-----QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
.+-...+.++...+.- ..+...+.... ..++..+-...+.++. +.++. .+...+-.+... +|...-..
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~--~D~~~~VR~~a~~aLg-~~~~~-~ai~~L~~~L~d---~~~~VR~~ 178 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITA--FDKSTNVRFAVAFALS-VINDE-AAIPLLINLLKD---PNGDVRNW 178 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHh--hCCCHHHHHHHHHHHh-ccCCH-HHHHHHHHHhcC---CCHHHHHH
Confidence 6655666666655421 12223232211 1235556666677777 66764 455555555542 34455555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 214 IISCYSKAR-NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 214 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 556666543 23456666655553 45777777888888888874 4555555555542 2 2346777888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
+. +|...+..+.+.. ||...-...+.+|.
T Consensus 250 ~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 250 DK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred CH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 85 6777777777642 46665555555543
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.32 E-value=74 Score=25.87 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
+++|...|+..... .|+..+|+.-+.... +|-.+..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 34444444444443 566666666665542 3455555555443
No 374
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.26 E-value=81 Score=24.65 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (481)
+.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|--.-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445555666666554 33455666666666777777777777665555444333344454444
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.10 E-value=62 Score=23.28 Aligned_cols=79 Identities=13% Similarity=-0.128 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHH
Q 042941 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWM 197 (481)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 197 (481)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.. ..||...|-.+-.. +.|..+....-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~---~~pdlepw~ALce~---rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL---CYPDLEPWLALCEW---RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC---CCchHHHHHHHHHH---hhccHHHHHHHHH
Confidence 356666666665543311 1111111223456677777777766554 35677777666654 5666666666666
Q ss_pred HHHhcC
Q 042941 198 EMSQRG 203 (481)
Q Consensus 198 ~~~~~g 203 (481)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666554
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.76 E-value=33 Score=22.04 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=5.1
Q ss_pred HHHcCCChHHHHHHH
Q 042941 252 ALAKGRLVKDAISLM 266 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~ 266 (481)
+|...|++++|.+++
T Consensus 32 gllqlg~~~~a~eYi 46 (62)
T PF14689_consen 32 GLLQLGKYEEAKEYI 46 (62)
T ss_dssp HHHHTT-HHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 333333333333333
No 377
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=59.52 E-value=60 Score=32.36 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=43.8
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
+...|..-+..+...++.. ...++.+..+-.-.+.....-++..|.+.|-.+.|..+.+.+-..-. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3344555555444444322 44445554443334556667778888888888888888887654422 2345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 042941 287 PLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
.+.++|+...+..+-..+.+..
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~~ 468 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEEY 468 (566)
T ss_dssp HHH-------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 7888888887777777666443
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.31 E-value=87 Score=25.54 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=20.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 250 IHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
+-.|.+.|.+++|.+++++.... |+......-+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 44566666666666666666553 344444444433333
No 379
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=59.13 E-value=91 Score=30.48 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (481)
......++.+... |+...|+.+++++...|..|..
T Consensus 258 ~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 258 SSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 4455556665544 8899999999999988866543
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.09 E-value=1e+02 Score=25.47 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNS-----LIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA 318 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 318 (481)
..|..++.... .+.. +.....+.+.... ...+|.. +...++..|++++|...++..... |....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 44555555443 2222 4444555555542 2233322 345677889999999888876654 22222222
Q ss_pred HHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042941 319 FLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEE 398 (481)
Q Consensus 319 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (481)
++ -..|.+.....|.+|+|+.+++...+.++ .......-.+.+...|+-++
T Consensus 127 l~---------------------------~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 127 LA---------------------------ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HH---------------------------HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHH
Confidence 21 12355667788999999999988776543 22334455678889999999
Q ss_pred HHHHHHHHHHCC
Q 042941 399 AHQYYMEMKEKQ 410 (481)
Q Consensus 399 A~~~~~~m~~~~ 410 (481)
|..-|++..+.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 999999988875
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.61 E-value=26 Score=28.99 Aligned_cols=29 Identities=10% Similarity=-0.041 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
+.+|..++..+...|+.++|.+...++..
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666666554
No 382
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.59 E-value=2.1e+02 Score=28.95 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=23.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
+|-.|.+.|+.++|.++....... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 455566777777777777444332 233444556666666654
No 383
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.55 E-value=1.4e+02 Score=27.75 Aligned_cols=28 Identities=14% Similarity=0.040 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (481)
.++.+. ..|+...+...++.+...|..|
T Consensus 240 ~l~~ai-~~~~~~~a~~~~~~l~~~~~~~ 267 (367)
T PRK14970 240 NVTDLI-LENKIPELLLAFNEILRKGFDG 267 (367)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCH
Confidence 355544 4478888888888887777555
No 384
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.16 E-value=59 Score=23.21 Aligned_cols=47 Identities=15% Similarity=-0.062 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCC
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP 169 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 169 (481)
.+.+++....+....+.....|.-.|.+.|+.+.|.+-|+.-+..+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFP 103 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFP 103 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCc
Confidence 33444444333332233333455566777777777777766555444
No 385
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.95 E-value=2.2e+02 Score=28.98 Aligned_cols=80 Identities=5% Similarity=0.004 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042941 328 EVFGLLESMRKM-GCQPTN--DTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYM 404 (481)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (481)
.+..++...... ++.+.. .+...+.......+...+|...++...... .+......-+....+.++++.+...+.
T Consensus 259 ~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 259 NARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 345555554333 222222 223344333344332555666555543321 244445555666668999999999999
Q ss_pred HHHHC
Q 042941 405 EMKEK 409 (481)
Q Consensus 405 ~m~~~ 409 (481)
.|...
T Consensus 337 ~L~~~ 341 (644)
T PRK11619 337 RLPME 341 (644)
T ss_pred hcCHh
Confidence 88654
No 386
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.82 E-value=1.9e+02 Score=28.09 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
...+..++......+....|+.++..+.+.|..|.
T Consensus 248 ~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 248 IEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 44444555554444445567777777776665444
No 387
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.57 E-value=1.4e+02 Score=27.76 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
......++.+. ..++...++.+++.+.+.|..|.
T Consensus 246 ~~~i~~l~~ai-~~~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 246 EKQSFLLTDAL-LKKDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 44555566554 44788999999999888775443
No 388
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.40 E-value=1.3e+02 Score=26.21 Aligned_cols=59 Identities=7% Similarity=0.086 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAP-----------NVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+-+...|...+.+.+..+++.++.+..-.. -...|..-|+.|....+-..-..+|++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 345556666666666666666665431110 13345566666766666666666666543
No 389
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.21 E-value=2.3e+02 Score=28.86 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=21.1
Q ss_pred hcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHh
Q 042941 24 ECGIKVSSELVSEVLSWVRNDWEAAFTFFLWA 55 (481)
Q Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 55 (481)
+.|+..+...+..+.....++...|+.+++..
T Consensus 198 ~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQa 229 (700)
T PRK12323 198 EEGIAHEVNALRLLAQAAQGSMRDALSLTDQA 229 (700)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45666666666666666667777777776653
No 390
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=56.99 E-value=1.6e+02 Score=29.56 Aligned_cols=30 Identities=20% Similarity=0.041 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
..++.+ ...|+...|+..+..+...|..|.
T Consensus 263 f~L~~a-i~~gd~~~Al~~l~~l~~~G~~p~ 292 (598)
T PRK09111 263 IDLFEA-LMRGDVAAALAEFRAQYDAGADPV 292 (598)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHcCCCHH
Confidence 345553 344788888888888887775554
No 391
>PRK09687 putative lyase; Provisional
Probab=56.92 E-value=1.4e+02 Score=26.47 Aligned_cols=198 Identities=10% Similarity=-0.003 Sum_probs=99.2
Q ss_pred cHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHcCCCCC
Q 042941 207 DVVSFSCIISCYSKARNL----HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV-----KDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 277 (481)
|...-...+.+++..|+. .++...+..+... .++..+-...+.++...+.. ..+...+...... ++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CC
Confidence 333333444445555542 3455555544332 34444444444444443321 1223333222222 24
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch----hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG----EEVFGLLESMRKMGCQPTNDTYIMLIK 353 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (481)
..+-...+.++.+.++ ..+...+..+.+. ++...-...+.++++. ..+...+..+. ..++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHH
Confidence 4444455666666655 3455555555443 3444444444444432 23333333333 2456667777888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 354 KFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||.......+..+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 88888874 4555554444432 2 234677888888885 688888887763 35666655555444
No 392
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.85 E-value=2.4e+02 Score=28.94 Aligned_cols=79 Identities=11% Similarity=0.014 Sum_probs=56.2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCC-C-CC----------CCHHHHHHHHHHHhccCChhHHHHH
Q 042941 20 NKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQS-G-YA----------HSTREYHTMIAILGKVRKFDTAWAL 87 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~-~-~~----------~~~~~~~~li~~~~~~g~~~~a~~~ 87 (481)
..+...|+..+...+..+.....++...++.+++.+.... + +. .+......++.++.. ++...++.+
T Consensus 189 ~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~ 267 (709)
T PRK08691 189 HVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAK 267 (709)
T ss_pred HHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 3345778999999999999988899999999998765311 1 11 123334445555554 788999999
Q ss_pred HHHHhcCCCCCC
Q 042941 88 IDEMRGGETGPS 99 (481)
Q Consensus 88 ~~~~~~~~~~p~ 99 (481)
++++...|+.+.
T Consensus 268 l~~L~~~G~d~~ 279 (709)
T PRK08691 268 AQEMAACAVGFD 279 (709)
T ss_pred HHHHHHhCCCHH
Confidence 999998877554
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.26 E-value=33 Score=23.31 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=9.3
Q ss_pred HHHHHHHHHhccCChhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWA 86 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~ 86 (481)
++..++.+++..|+++++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444433
No 394
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=56.18 E-value=1.8e+02 Score=27.40 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=59.0
Q ss_pred hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHcCCChHHHHHHHHHHHHc
Q 042941 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHA--------LAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 201 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~ 272 (481)
...+.||..+.|.+...++..-..+-...+++-..+.+. |-...+-+++-. -.+...-+++.++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 346789999999988888888888888888888888763 333333222211 12344567888888887644
Q ss_pred CCCCChhhHHHHHHHHHh
Q 042941 273 GVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 273 ~~~~~~~~~~~li~~~~~ 290 (481)
=---|+.-+..|.+.|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 222367777778777764
No 395
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.93 E-value=59 Score=33.35 Aligned_cols=88 Identities=8% Similarity=0.003 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCC-CCC---------cccHHHHHHHHHHHHh
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGET-GPS---------LVTKQTLLILIRRYCA 115 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~---------~~~~~~~~~li~~~~~ 115 (481)
++..+.++.+....++..+......+.... .|+...|+.++++....+- ..+ ..+...+..++.. +.
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-LA 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-HH
Confidence 455566666655566666666655555443 6788888888776543321 001 0112333344443 34
Q ss_pred cCCHHHHHHHHHHHhhcCCCC
Q 042941 116 VHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~ 136 (481)
.++..+++..++++...|..+
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 477888888888887766543
No 396
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.63 E-value=91 Score=25.44 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 361 FGNVFKVWNEISENGNGPD--RSSY-----TALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
++.|+.+|+.+.+....|. .... ...+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4556666666655422221 1111 1234467788888888888888765
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.58 E-value=16 Score=27.78 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 042941 292 RKLDEARQAFDEMLQRGISPT 312 (481)
Q Consensus 292 g~~~~a~~~~~~m~~~~~~p~ 312 (481)
|.-..|..+|+.|.+.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 445555566666666655554
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.43 E-value=12 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHhcCCCCCC
Q 042941 79 RKFDTAWALIDEMRGGETGPS 99 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~ 99 (481)
|.-.+|-.+|..|++.|-.||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333445555555555554444
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.96 E-value=1.8e+02 Score=27.13 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---------CCC
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF---------KFA 135 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~ 135 (481)
...+.-+...|..+|+++.|++.|.+...-- .-.......|..+|..-.-.|+|..+.....+..+. .++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 3556677777888888888888888754321 001112556677777777778888777777766543 122
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
+...++..+...+.+ ++..|.+.|
T Consensus 229 ~kl~C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHH
Confidence 233344444443333 555555555
No 400
>PRK10941 hypothetical protein; Provisional
Probab=54.86 E-value=1.5e+02 Score=26.12 Aligned_cols=78 Identities=9% Similarity=-0.097 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCC--CCchHhHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF--PFNTKSFNIILNGW 182 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~ 182 (481)
..+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...... .|+.......+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34456667888999999999999998765 3355566666777888999888887666543222 34555555555544
Q ss_pred H
Q 042941 183 C 183 (481)
Q Consensus 183 ~ 183 (481)
-
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 401
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=54.34 E-value=2.7e+02 Score=28.92 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=59.6
Q ss_pred HHHHhcCC------ChhHHHHH----HHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCC--C----------CC
Q 042941 6 DILREFSH------KRSEMRNK----IEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSG--Y----------AH 63 (481)
Q Consensus 6 ~~~~~~~~------~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~--~----------~~ 63 (481)
.++++|-. +..++... +...|+..+...+..+.....++...|+.+++......+ + ..
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGAL 244 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCC
Confidence 55555542 33444433 345688889999999999888999999999876542211 1 12
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCC
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGP 98 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 98 (481)
+......++..+. .|++..++.+++++...|+.+
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 3333444444443 478888888888888876644
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.33 E-value=85 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=12.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
++..+...++.-.|.++++.+.+.++.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 334444444444445555555444433
No 403
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.97 E-value=1.7e+02 Score=26.45 Aligned_cols=63 Identities=6% Similarity=-0.145 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.++..-..++....+.|+.+....+++..... ++ ......++.+++...+.+....+++....
T Consensus 167 i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~---~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 167 IPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS---PEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp S-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST---HHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC---HHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 34444455555555555544444444444332 12 44555555555555555555555555554
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.71 E-value=77 Score=24.03 Aligned_cols=45 Identities=4% Similarity=-0.119 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 83 TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 129 (481)
.+.++|..|...|+... .+..|..-...+...|++++|..+|...
T Consensus 81 ~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 89999999999888665 3788999999999999999999999763
No 405
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=52.89 E-value=1.9e+02 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLS 146 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 146 (481)
....++.+.. .|+...|..+++.+.+.|..| ...+..+..
T Consensus 246 ~i~~l~~ai~-~~~~~~a~~~~~~l~~~~~~~-~~il~~l~~ 285 (355)
T TIGR02397 246 KLIELLEAIL-NKDTAEALKILDEILESGVDP-EKFLEDLIE 285 (355)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 3344555554 488999999999988877554 333333433
No 406
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.81 E-value=2.1e+02 Score=27.18 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISC 217 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 217 (481)
..+.+.|+..+..|.+.|..|....-..+..+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35666666666666666665554443333333
No 407
>PF01196 Ribosomal_L17: Ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3F1F_R 1VSP_L 3PYV_N 3PYR_N 3PYO_N 1VSA_L 3MS1_N 3F1H_R 3D5B_R 3MRZ_N ....
Probab=52.52 E-value=40 Score=24.10 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccccc
Q 042941 384 TALIHALFLNGK-------LEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISKKS 456 (481)
Q Consensus 384 ~~l~~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 456 (481)
..++..+.+.|+ ..++..+.++++..+..-+..+...+..++.+.....+.++.+.....+.+..|.-+..+-
T Consensus 3 rnlvt~Li~herI~TT~~KAke~r~~aErlIt~ak~~~~~~~r~~~~~l~~~~~v~KLf~~l~pRy~~r~GgYTRi~kl~ 82 (97)
T PF01196_consen 3 RNLVTSLIRHERIETTLAKAKELRPYAERLITLAKKGDLHARRQALSWLRDKELVKKLFKELAPRYADRNGGYTRIIKLG 82 (97)
T ss_dssp HHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHCSSSHHHHHHHHTTHHHHTTTSSS-SEEEEEEE
T ss_pred HHHHHHHHhCCeEEecHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHHHccCCCCeEEEEeCC
Confidence 345566666665 3566777888888877778888888888888888888999999999999999999888877
Q ss_pred ccchh
Q 042941 457 DQDRE 461 (481)
Q Consensus 457 ~~~~~ 461 (481)
.+.|+
T Consensus 83 ~R~gD 87 (97)
T PF01196_consen 83 PRRGD 87 (97)
T ss_dssp ECSSS
T ss_pred CCCCC
Confidence 66663
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.47 E-value=1.1e+02 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
.|.++.-.. ..+.+....++++.+
T Consensus 42 iN~iL~hl~-~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLA-SYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHH-HccchHHHHHHHHHH
Confidence 344444434 444455555554444
No 409
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.12 E-value=1.4e+02 Score=24.69 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=71.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC--IISCYSKARNLHKVLRLFDQMKRMGIECDRKVY---- 246 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---- 246 (481)
..|..++.... .+.+ +.....+.+...+....-.++.+ +...+...+++++|..-++..... +.| ..+
T Consensus 55 ~~Y~~~i~~~~--ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ--AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKD-ENLKALA 128 (207)
T ss_pred HHHHHHHHHHh--cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chh-HHHHHHH
Confidence 34555555432 3333 44445555555422211112222 235567778888888877766643 112 222
Q ss_pred -HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 247 -NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 247 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
-.|.+.....|.+|+|+..++.....+.. ......--..+...|+-++|..-|.+..+.+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23445566778888888888777654321 2222333456777888888888888777764
No 410
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=50.88 E-value=37 Score=25.11 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=32.0
Q ss_pred hHHHHHHhcC--CChhHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 042941 3 TLVDILREFS--HKRSEMRNKIEECGIKVSSELVSEVLSWVR 42 (481)
Q Consensus 3 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 42 (481)
.|++++.+.+ -+|.+|.+.+++.+..++..++-..|..+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~ 46 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLE 46 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4667777654 379999999998888889988888888874
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=50.87 E-value=92 Score=31.00 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=10.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEIS 372 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~ 372 (481)
+|..+|...|++-.+.++++.+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 34444444444444444444443
No 412
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.66 E-value=2e+02 Score=26.22 Aligned_cols=63 Identities=8% Similarity=-0.124 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
+.-+.+++++++.+ +.+...+...|..+.+..+.+...+.++.+....+.+...|...+....
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 44556666666553 2344455556666666666666666666554444445666666655543
No 413
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.79 E-value=1.9e+02 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCChHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~ 263 (481)
..+|..|+.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345777888888888776544
No 414
>PRK05629 hypothetical protein; Validated
Probab=49.55 E-value=1.8e+02 Score=26.35 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCH
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (481)
...|+...|..+++.+...|..|-.
T Consensus 204 v~~g~~~~Al~~l~~l~~~g~~pi~ 228 (318)
T PRK05629 204 ACAGQVSKAVASTRRALQLGVSPVA 228 (318)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4468899999999998888876643
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.54 E-value=1.1e+02 Score=23.12 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 363 NVFKVWNEISENGNGP-DRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 363 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
.+.++|..|...|+.. -...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777766543 344666777777777888888777765
No 416
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.39 E-value=2.7e+02 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
....++.++ ..++.+.|+.++.++...|..|.
T Consensus 244 ~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 244 RLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 344555555 55888999999999888875443
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.10 E-value=40 Score=29.83 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRT 315 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 315 (481)
|+..|...++.||+++|+.++++..+.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34556666666666666666666666665433333
No 418
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.83 E-value=2.7e+02 Score=27.35 Aligned_cols=79 Identities=6% Similarity=-0.003 Sum_probs=53.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCC------------CCHHHHHHHHHHHhccCChhHHHHH
Q 042941 20 NKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYA------------HSTREYHTMIAILGKVRKFDTAWAL 87 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~a~~~ 87 (481)
..+.+.|+..++..+..+.....++...|+.+++.+....+-. ++....-.++.++. .|+.+.+..+
T Consensus 189 ~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~ 267 (509)
T PRK14958 189 HLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGC 267 (509)
T ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3456778999999998888888899999999997764221111 22233333444443 3777888888
Q ss_pred HHHHhcCCCCCC
Q 042941 88 IDEMRGGETGPS 99 (481)
Q Consensus 88 ~~~~~~~~~~p~ 99 (481)
++.+...|..|.
T Consensus 268 ~~~l~~~g~~~~ 279 (509)
T PRK14958 268 VTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHcCCCHH
Confidence 888888776654
No 419
>PRK05591 rplQ 50S ribosomal protein L17; Validated
Probab=48.78 E-value=1.1e+02 Score=22.69 Aligned_cols=80 Identities=9% Similarity=0.030 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 382 SYTALIHALFLNGKL-------EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
.+..++..+.+.|++ .++..+.++|+..+-..+......+...+.+.....+.+..+.....+.+..|.-+.+
T Consensus 17 llrnl~tsLi~herI~TT~~KAKelr~~aEklIt~aK~~~~~~rR~~~~~L~~~~~v~KLf~~lapry~~R~GGYTRI~k 96 (113)
T PRK05591 17 MLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHARRQAFARLRDKEAVHKLFDEIAPRYADRNGGYTRILK 96 (113)
T ss_pred HHHHHHHHHHHcCeEEecHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCcCCCCeEEEEE
Confidence 455566666777653 4566677888877777787777888888888888888899999998999999998887
Q ss_pred ccccchh
Q 042941 455 KSDQDRE 461 (481)
Q Consensus 455 ~~~~~~~ 461 (481)
+-.+.|+
T Consensus 97 ~~~R~gD 103 (113)
T PRK05591 97 LGFRRGD 103 (113)
T ss_pred CCCCCCC
Confidence 7766664
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.66 E-value=72 Score=22.53 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=29.4
Q ss_pred hccCChhHHHHHHHHH----hcCCCCCCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 76 GKVRKFDTAWALIDEM----RGGETGPSL-VTKQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 76 ~~~g~~~~a~~~~~~~----~~~~~~p~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.+.|++..|.+-+... ...+..+.. .-..+...+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567777775544443 332221100 0012223344556667888888888887764
No 421
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.63 E-value=2.7e+02 Score=27.12 Aligned_cols=26 Identities=12% Similarity=-0.144 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCCHHh
Q 042941 115 AVHDVGRAINAFYAYKRFKFAVGIED 140 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (481)
+.++++.|+.++..+...|..|....
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 44677777777777776665554433
No 422
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.31 E-value=1.5e+02 Score=29.12 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
.++..+.+++. ...+.+.|++.|++..+
T Consensus 677 l~~~~~g~~~l-~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 677 LTFLSLGNAYL-ALKNISGALEAFRQALK 704 (886)
T ss_pred hHHHhcchhHH-HHhhhHHHHHHHHHHHh
Confidence 34444444444 44444444444444443
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.90 E-value=3.6e+02 Score=28.48 Aligned_cols=248 Identities=9% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH--HHHHHHHHHHhhcCCCCCHHhHHH--
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV--GRAINAFYAYKRFKFAVGIEDFQG-- 143 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 143 (481)
|..++..|...|+.++|+++|.+....--.-|......+..+++.+-..+.. +-.++.-++....+..-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHcCCChhhHHHHHhh-ccCCCCCchHhHHHHHHHHHHhcCC-----------------HHHHHHH
Q 042941 144 ----------LLSALCRYKNVQDAEHLMFC-NKDVFPFNTKSFNIILNGWCNIIGS-----------------SREAERV 195 (481)
Q Consensus 144 ----------ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~a~~~ 195 (481)
-+--|......+-+...++. +...-.++....+.++..|+ +.=+ .+.....
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~-e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL-EKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH-HHHhhccCchhccccchhhhHHHHHHHH
Q ss_pred HHHHHhcCCc------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 196 WMEMSQRGIC------YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 196 ~~~~~~~g~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
++.-....+. +...-|....-.+.+.|+.++|+.++-... ++++.|..+....
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L---------------------~d~~~A~~Yc~~~ 724 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL---------------------DDIDAAESYCLPQ 724 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh---------------------cchhHHHHHHHHh
Q ss_pred HHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHH
Q 042941 270 EEKGVAPNVVTYNSLIKPLCKA--RKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRK 338 (481)
Q Consensus 270 ~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~ 338 (481)
-+ ...++...|..++..|... +--.....+.+-+.+++-+.|..-+.-++-.....+.....+..+.+
T Consensus 725 y~-~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr 794 (877)
T KOG2063|consen 725 YE-SDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLLPDDISLKDLCSFLSKLLR 794 (877)
T ss_pred cc-CCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhCCccCcHhHHHHHHHHHHH
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.44 E-value=96 Score=21.67 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (481)
.|+.+.|.+++..+. .| +..|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 344455555554444 32 12344444444444443
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.44 E-value=2.2e+02 Score=25.88 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHcCCChHHHHHHHHHHHH-----cCCCCChhh
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRM---GIECDRKVY--NAVIHALAKGRLVKDAISLMKSMEE-----KGVAPNVVT 280 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 280 (481)
+...-+.++.++|+++++++... .-.|+...| .....++...|+...+.+.+++..+ .+++|++.+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 33344445666666666666542 123454444 3344555566777777777776665 456654443
No 426
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=47.10 E-value=35 Score=25.50 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=27.4
Q ss_pred hHHHHHHhcCC--ChhHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 042941 3 TLVDILREFSH--KRSEMRNKIEECGIKVSSELVSEVLSWVR 42 (481)
Q Consensus 3 ~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 42 (481)
.|++++.+.+. +|.+|+..|++.+..++..++-..|..+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 53 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLE 53 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHH
Confidence 45666666653 78888888888888888777777777663
No 427
>PRK12798 chemotaxis protein; Reviewed
Probab=46.94 E-value=2.5e+02 Score=26.41 Aligned_cols=203 Identities=9% Similarity=-0.074 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHh---hcCHHHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHhccC
Q 042941 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWV---RNDWEAAFTFFLWAG-KQSGYAHSTREYHTMIAILGKVR 79 (481)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g 79 (481)
+...++-.+..+...+..+.....++.-.-+..++... ..++..|+.+|++.. ..+|--...-+.-.-+......|
T Consensus 120 ~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g 199 (421)
T PRK12798 120 ALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLG 199 (421)
T ss_pred HHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcC
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 80 KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
+.+++..+-.....+ +.-++.-...+..+.....+..+-..-..+...+......--...|..+.+.-.-.|+.+.|.-
T Consensus 200 ~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~ 278 (421)
T PRK12798 200 DADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARF 278 (421)
T ss_pred cHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHH
Q ss_pred HHhh---ccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc
Q 042941 160 LMFC---NKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD 207 (481)
Q Consensus 160 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 207 (481)
.-.+ +......+....+..-.+...-..+++++.+.+..+....+.+.
T Consensus 279 As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 279 ASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
No 428
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.93 E-value=74 Score=30.99 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH-----------HHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL-----------IRR 112 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l-----------i~~ 112 (481)
+.+.-...+..+..+.++..+..++..+.+. ..|...+++.+++++...|- ..++......+ +-.
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~ 254 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLE 254 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777777888888887777666554 46888899999999887642 11112222211 112
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (481)
....++...++..++.+.+.|..|..
T Consensus 255 ~i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 255 AILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HHHccCHHHHHHHHHHHHHhCcCHHH
Confidence 23457888888888888887765544
No 429
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.30 E-value=2.1e+02 Score=29.13 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=56.7
Q ss_pred HHHHHHHHHhh------cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCC-CC-----
Q 042941 32 ELVSEVLSWVR------NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETG-PS----- 99 (481)
Q Consensus 32 ~~~~~~l~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----- 99 (481)
.+.-+++++|. -..+...+.+..+..+.|+..+......++.. ..|.+..|+.+++.....+.. .+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~--A~Gs~RdALsLLdQaia~~~~~It~~~V~ 243 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA--AQGSMRDALSLTDQAIAYSAGNVSEEAVR 243 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHH
Confidence 33445666662 12344555555554556666666655544433 578899999998875432211 11
Q ss_pred ----cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 042941 100 ----LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA 135 (481)
Q Consensus 100 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (481)
..+...+..++..+. .++...++.+.+.+.+.|..
T Consensus 244 ~~LG~~d~~~i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 244 GMLGAIDQSYLVRLLDALA-AEDGAALLAIADEMAGRSLS 282 (700)
T ss_pred HHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 001234444555444 57777778877777766644
No 430
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=46.11 E-value=70 Score=21.25 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=29.2
Q ss_pred hHHHHHHhcC-CChhHHHHHHHhcCCCCCHHHHHHHHHHh
Q 042941 3 TLVDILREFS-HKRSEMRNKIEECGIKVSSELVSEVLSWV 41 (481)
Q Consensus 3 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 41 (481)
.|.+++.+.. .+=.++...+.+.|+..+-.+++.-|..+
T Consensus 9 ~I~~li~~~~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 9 LIKELISEHEISSQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp HHHHHHHHS---SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHCCcCCHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 5667888777 57789999999999999999999988877
No 431
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.03 E-value=2.7e+02 Score=26.47 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=51.7
Q ss_pred cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 205 CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 205 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
..+......++..+ .|+...+..+++.+...+...+ .+....++...... ...+...+..+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~-~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAAR-YDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhc-cCCCccHHHHH
Confidence 44555555554432 6788888877777654321111 22222222222111 11122233445
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042941 285 IKPLCK---ARKLDEARQAFDEMLQRGISPTIRTYHAFLDI 322 (481)
Q Consensus 285 i~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 322 (481)
++++.+ .++++.|+.++..|.+.|..|....-..++.+
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555544 47899999999999998877664443333333
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.92 E-value=1.4e+02 Score=23.06 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 342 QPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENG-NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
.++..+--.+..++.+..+ +.+.+.+++.+.+.. ..........|.-++.+.++++++.++++.+.+. .||..-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcHH
Confidence 4455555556666666554 556777888887622 2222333445666788999999999999888863 565544
Q ss_pred HH
Q 042941 418 DE 419 (481)
Q Consensus 418 ~~ 419 (481)
-.
T Consensus 107 a~ 108 (149)
T KOG3364|consen 107 AL 108 (149)
T ss_pred HH
Confidence 33
No 433
>PRK07914 hypothetical protein; Reviewed
Probab=45.82 E-value=2.3e+02 Score=25.69 Aligned_cols=24 Identities=17% Similarity=-0.137 Sum_probs=18.2
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
+-.|+..+|..+++.+...|.+|-
T Consensus 206 i~~g~~~~A~~~l~~L~~~ge~p~ 229 (320)
T PRK07914 206 AVAGDVAGAAEALRWAMMRGEPHV 229 (320)
T ss_pred HHCCCHHHHHHHHHHHHHCCCchH
Confidence 446888888888888888776653
No 434
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=45.64 E-value=1.6e+02 Score=23.84 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 330 FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
..++..+.+.|.--|...-...+..-.+.| ..-..+.+++...|+ +..+....+..+......+.|...+.+-...
T Consensus 55 e~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~ 130 (174)
T COG2137 55 EEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKR 130 (174)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCc
Confidence 445555555555444444444444444444 334455555666664 3444445555455555555555554443333
Q ss_pred -CCCCCHhHHHHHHHHHhhhhHHH
Q 042941 410 -QLLPEPKTDELLQDWSYNKQFVE 432 (481)
Q Consensus 410 -~~~p~~~~~~~l~~~~~~~~~~~ 432 (481)
+..|+..-..-+...+...|-.-
T Consensus 131 ~~~~~~~~~k~Ki~r~L~~rGFs~ 154 (174)
T COG2137 131 ENKPPDKKEKAKIQRFLLRRGFSY 154 (174)
T ss_pred cccCcchhHHHHHHHHHHHcCCCH
Confidence 23344343444444444444333
No 435
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=45.61 E-value=1.1e+02 Score=22.02 Aligned_cols=55 Identities=7% Similarity=0.056 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
..|++++|..+.+.+ ..||...|-++-. .+.|..+.+..-+..|...| .|....|
T Consensus 51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 567777776665544 2566666655533 45666666666666666655 3443333
No 436
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=45.31 E-value=53 Score=21.45 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=31.5
Q ss_pred hHHHHHHhcCC--ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCH
Q 042941 3 TLVDILREFSH--KRSEMRNKIEECGIKVSSELVSEVLSWVRNDW 45 (481)
Q Consensus 3 ~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 45 (481)
.|+++|.+++. .+..+.+.+...|...+..++...|..+..++
T Consensus 2 ~IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 2 FILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 46677766664 66778888887888888888888888775444
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.28 E-value=2.4e+02 Score=25.58 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIEC-------------DRKVYNAVIHALAKGRLVKDAISLMKSMEEK-GVAPNVVTYNSLIKP 287 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 287 (481)
++.+....++..+...++.| |...++.+.. .+..++++-.+..++..+. |-.--...+......
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~--~neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKK--ANEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhchhHH----HHHHHHHHHcCCCCCHH----HHHHHHHHH
Q 042941 288 LCKARKLDEARQAFDEMLQR----GISPTIRTYHAFLDIIRTGEEV----FGLLESMRKMGCQPTND----TYIMLIKKF 355 (481)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~l~~~~ 355 (481)
||+.|+.+.|++.++...++ |.+.|+..+..-+..+-...+. .+..+.+.+.|-.++.. +|..+- |
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~ 191 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--C 191 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--H
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (481)
....++.+|-.+|-+....--.-...+|..++.--.-.|
T Consensus 192 msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 192 MSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
No 438
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=45.16 E-value=58 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 385 ALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
.++--+.-.|+++.|+.+.+.+++.|..
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444456677777777777777776643
No 439
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=44.88 E-value=1.8e+02 Score=27.98 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHhcC-CHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY----NSLIKPLCKAR-KLD 295 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g-~~~ 295 (481)
..++++|++..++..+.+-+.+. |-...|.++|.++.+.|+.||..|= .-.+.+|+-.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 35678888888888777633222 3344567788888888888876552 23344566655 456
Q ss_pred HHHHHHH
Q 042941 296 EARQAFD 302 (481)
Q Consensus 296 ~a~~~~~ 302 (481)
++.++..
T Consensus 274 e~~~lr~ 280 (545)
T TIGR01228 274 DADKLRQ 280 (545)
T ss_pred HHHHHHH
Confidence 6555443
No 440
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.82 E-value=2.5e+02 Score=25.82 Aligned_cols=128 Identities=7% Similarity=-0.149 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---- 137 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 137 (481)
.|++.+.-.++.-|....+-+...-.-... ....+.+..++.+.+.+...+.+.......- .|.
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f-----------~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~-~~~~~ql 139 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIF-----------FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKM-QPSNGQL 139 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHH-----------HHHHHHHHHHHHhcCCccccchHHHHHHHHh-ccCccch
Confidence 456666666666665554422221111111 3344555566666666555444444443211 111
Q ss_pred HHhHHHHHHHHHcCCChhhHHHHHhh-c----cC--CCCCchHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 138 IEDFQGLLSALCRYKNVQDAEHLMFC-N----KD--VFPFNTKS-FNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 138 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~----~~--~~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
......++..+.+.+++..+...++. + .. ..+|.... |.......+...++++.|.-+|....-
T Consensus 140 T~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 140 TSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred hhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 22334466677777776666555432 1 11 12222221 111111111146788888888887664
No 441
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.79 E-value=1.4e+02 Score=28.31 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 176 ~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
..|+.-|. ..|+..+|.+.++++.-.-+ .....+.+++.+.-+.|+-...+.+++..-+.|. .|.+.+-++|.+
T Consensus 513 ~~LLeEY~-~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYE-LSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHH-hccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 44555666 56666666666555422111 1234455566666666665556666665555542 333444444443
No 442
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.10 E-value=3.5e+02 Score=27.19 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=17.2
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC
Q 042941 114 CAVHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~ 136 (481)
...++...++.+++.+...|..|
T Consensus 256 l~~~d~~~al~~l~~l~~~G~~~ 278 (576)
T PRK14965 256 VFGRDTRALLEIVERVDEFGYNM 278 (576)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 34578888888888888877553
No 443
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.80 E-value=1.7e+02 Score=26.21 Aligned_cols=70 Identities=11% Similarity=0.207 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 042941 330 FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----------NGKLEEA 399 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 399 (481)
.++++.+.+.++.|.-..+.-+.-.+...=.+..++.+|+.+.. |+.-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 67888888889999988887777778888888999999999886 33346666666553 3666666
Q ss_pred HHHHH
Q 042941 400 HQYYM 404 (481)
Q Consensus 400 ~~~~~ 404 (481)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 65554
No 444
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.58 E-value=2.1e+02 Score=24.59 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=27.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCChHHHHHHHHHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK-GRLVKDAISLMKSME 270 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~ 270 (481)
+.+.+-..++++++...++.+...+...+..--+.+..+|-. .|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 344455556666666666666665555555555555544422 233334444444443
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.28 E-value=1.8e+02 Score=23.51 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=36.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042941 334 ESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL 396 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (481)
+.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|-.--+..+.+.|-.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555666665433 34444444556667778888877776666666544555666666543
No 446
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.18 E-value=2.5e+02 Score=25.20 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=31.5
Q ss_pred hhHHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHh
Q 042941 2 KTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWV 41 (481)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 41 (481)
..+++++...+.+-+.|-+.+...|-.++-.-|..++...
T Consensus 33 da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdi 72 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDI 72 (412)
T ss_pred HHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3577888888888888888898888888877777666553
No 447
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=42.62 E-value=3.5e+02 Score=26.77 Aligned_cols=339 Identities=11% Similarity=0.037 Sum_probs=158.5
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh-ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILG-KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAIN 124 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~ 124 (481)
+.+..+|+... .+++.++..|......+. ..|+.+...+.|+..... +.-+..+...|...|.--..++++.....
T Consensus 96 ~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~-vG~dF~S~~lWdkyie~en~qks~k~v~~ 172 (577)
T KOG1258|consen 96 ENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSY-VGLDFLSDPLWDKYIEFENGQKSWKRVAN 172 (577)
T ss_pred HHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-cccchhccHHHHHHHHHHhccccHHHHHH
Confidence 45667777665 344567777777766654 456777777777777653 33355566777777777777788888888
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHc-----CCChhhHHHHHhhccC-----CCCCchHhHHHHHHHHHH----------
Q 042941 125 AFYAYKRFKFAVGIEDFQGLLSALCR-----YKNVQDAEHLMFCNKD-----VFPFNTKSFNIILNGWCN---------- 184 (481)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~---------- 184 (481)
+|++.++.....-...|.......-. ....+++.++-..... ...+.......-+.....
T Consensus 173 iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~ 252 (577)
T KOG1258|consen 173 IYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT 252 (577)
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH
Confidence 88887763221111112111111111 1122222222111000 000001111111110000
Q ss_pred --------------hcCCHHHHHHHHHHHHhc---CC----cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 042941 185 --------------IIGSSREAERVWMEMSQR---GI----CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR 243 (481)
Q Consensus 185 --------------~~~~~~~a~~~~~~~~~~---g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 243 (481)
......+....++.-... .+ .++..+|...+..-...|+++.+.-+|+...-. +..-.
T Consensus 253 ~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~ 331 (577)
T KOG1258|consen 253 ILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYD 331 (577)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhH
Confidence 111122222222222221 01 123456777777777777777777777766532 11223
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHH----HH
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK-ARKLDEARQAFDEMLQRGISPTIRTY----HA 318 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~----~~ 318 (481)
..|--.+.-....|+.+-|..++....+-..+ +......+-..+.. .|++..|..+++.+...- |+..-. ..
T Consensus 332 efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~ 408 (577)
T KOG1258|consen 332 EFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKIN 408 (577)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHh
Confidence 34444455555557777777777666554332 22222222223332 467888888888776653 443211 11
Q ss_pred HHHHHhchhHHH---HHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042941 319 FLDIIRTGEEVF---GLLESMRKMGCQPTNDTYIMLIKK-----FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHAL 390 (481)
Q Consensus 319 li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (481)
+...-+...... .++....... -+..+...+.-- +.-.++.+.|..++.++.+. .+++...|..++.-.
T Consensus 409 ~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 409 WERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 111111111111 1111111111 111122222222 22346677777777777665 345566666666655
Q ss_pred HhcC
Q 042941 391 FLNG 394 (481)
Q Consensus 391 ~~~g 394 (481)
...+
T Consensus 486 ~~~~ 489 (577)
T KOG1258|consen 486 LIQP 489 (577)
T ss_pred HhCC
Confidence 5443
No 448
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=42.53 E-value=4.6e+02 Score=28.15 Aligned_cols=294 Identities=11% Similarity=0.038 Sum_probs=140.8
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH-------HHHhcC---CHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG-------WCNIIG---SSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
+=+++...+.+++|...+.++...+|.....|.++.++ .. ..| .+++|+.-|+.+...--.|= -|--
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-EQGDPRDFTQALSEFSYLHGGVGAPL--EYLG 557 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-hcCChHHHHHHHHHHHHhcCCCCCch--HHHh
Confidence 34677788889999999998888777766666555443 22 334 35667777766654321221 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCC--------------------HHHHHHHHHHHH---cCCChHHHHHHHHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRM-GIECD--------------------RKVYNAVIHALA---KGRLVKDAISLMKSM 269 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------------------~~~~~~li~~~~---~~g~~~~a~~~~~~~ 269 (481)
-.-+|-+.|++++-.+-+.-..++ .-.|- ..+|.-++-+.. ..-...+-.++|+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 223456666666655555444332 11121 111111111111 111112223334333
Q ss_pred HHcC-------C-----------------------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 270 EEKG-------V-----------------------------------APNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 270 ~~~~-------~-----------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..+- + -++..+..-++...+..|.++-+.+....+.+.
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (932)
T PRK13184 638 YHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILAEV 717 (932)
T ss_pred HhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3220 0 012233333344446677777776666665532
Q ss_pred C----CCCCH--------HHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 308 G----ISPTI--------RTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND--TYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 308 ~----~~p~~--------~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
- ..-+. ..|-.-+.+....+...++++.... .+|... .+..++.-+...++.+.-..+.+.+..
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (932)
T PRK13184 718 SDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN--TDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYD 795 (932)
T ss_pred hhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh--CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 1 00011 1122223444555555666553332 233333 233344444445566666666666555
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHhhhhHHHHHHHHHhhcC
Q 042941 374 NGNGPD--RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQ-DWSYNKQFVERQIASLKAHQ 442 (481)
Q Consensus 374 ~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 442 (481)
.-.+.. ......-|.+|.-..++++|-++++.....-..-+....-.+. .++.-.+..+.+...+....
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 796 YVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred ccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 322211 1233455788999999999999997765443333332222222 23444444444444444444
No 449
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.35 E-value=1.6e+02 Score=29.90 Aligned_cols=141 Identities=9% Similarity=0.005 Sum_probs=0.0
Q ss_pred ChhHHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCC
Q 042941 1 AKTLVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRK 80 (481)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (481)
++.|+..+++.+....-++..-......++...-...+..-.-..++....+..+....|+..+..+...++.. ..|+
T Consensus 135 ~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~Gd 212 (702)
T PRK14960 135 FNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES--AQGS 212 (702)
T ss_pred HHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCC
Q ss_pred hhHHHHHHHHHhcCC-------------CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 81 FDTAWALIDEMRGGE-------------TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~-------------~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
...|..+++.+...| -..+ ......++.+..+ ++...++.+++.+...|..++ ..+..|+..
T Consensus 213 LRdALnLLDQaIayg~g~IT~edV~~lLG~~d---~e~IfdLldAI~k-~d~~~al~~L~el~~~g~d~~-~~l~~Ll~~ 287 (702)
T PRK14960 213 LRDALSLTDQAIAYGQGAVHHQDVKEMLGLID---RTIIYDLILAVHQ-NQREKVSQLLLQFRYQALDVS-LVLDQLIST 287 (702)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHhccCC---HHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Q ss_pred H
Q 042941 148 L 148 (481)
Q Consensus 148 ~ 148 (481)
+
T Consensus 288 l 288 (702)
T PRK14960 288 L 288 (702)
T ss_pred H
No 450
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.03 E-value=90 Score=20.09 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=7.0
Q ss_pred cCCChHHHHHHHHHHH
Q 042941 255 KGRLVKDAISLMKSME 270 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~ 270 (481)
..|++=+|.++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3444444444444443
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.96 E-value=2.1e+02 Score=28.76 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=56.3
Q ss_pred HHHHHHHcCCChhhHHHHHhhccC---CCCCchHhHHHHHHHHHHhcCCHHH------HHHHHHHHHhcCCcccHHhHHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKD---VFPFNTKSFNIILNGWCNIIGSSRE------AERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~------a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
+|+.+|...|++-.+.++++.... +...-...+|..++.+. +.|.++- |...++.. -+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~-q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREII-QRGSFELTDVLSNAKELLQQA---RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHh---hcCCcchHHHH
Confidence 789999999999999999887533 22333456788888888 7887642 33333332 34557788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
++.+....-.-.-..-++.++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 87765543333333334444443
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.81 E-value=3.7e+02 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 392 LNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
+.|++.+|.+.+-.+...+..|...-...+...
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 457788888877777777777777666666554
No 453
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.40 E-value=2.4e+02 Score=25.27 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
..|+..|..+..+|.-.|+...+.+-+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 567788999999998888776655433
No 454
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=41.38 E-value=2.8e+02 Score=25.24 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
.|. ++.+. ..|+...|..+++.+...|..|-
T Consensus 203 if~-l~dai-~~~~~~~A~~~l~~L~~~g~~p~ 233 (326)
T PRK07452 203 SLQ-LADAL-LQGNTGKALALLDDLLDANEPAL 233 (326)
T ss_pred HHH-HHHHH-HCCCHHHHHHHHHHHHHCCCcHH
Confidence 444 44443 34788888888888887775543
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.92 E-value=1.4e+02 Score=21.77 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK-ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
..++..|...|+.++|...+.++... -.........+-.++-+ ...-+.+..++..+.+.+..+....-.++-..+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~ 84 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLES 84 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q ss_pred hhHH-----------HHHHHHHHHcCCCC
Q 042941 326 GEEV-----------FGLLESMRKMGCQP 343 (481)
Q Consensus 326 ~~~~-----------~~~~~~~~~~~~~~ 343 (481)
.++. -+++..+...|+-|
T Consensus 85 l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 85 LEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred hhhccccchHHHHHHHHHHHHHHHcCCcC
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.85 E-value=1.9e+02 Score=23.28 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=27.3
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 235 KRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 235 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
.+.|++++..=. .++..+...++.-.|.++++.+.+.+..++..|-...+..+.+.|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 344544433222 3333333344444566666666665555555554444444444443
No 457
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=40.82 E-value=3.9e+02 Score=26.76 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCC-CC---------cccHHHHHHHHHHHHh
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETG-PS---------LVTKQTLLILIRRYCA 115 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~---------~~~~~~~~~li~~~~~ 115 (481)
++....+.+.....|+..+..+...++... .|+...|+.+++.....+-. .+ .........++.+. .
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~s--~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~~~~~i~~l~~al-~ 257 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARAA--EGGMRDALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAI-V 257 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 344444444445556666666655555432 46777777777655432100 00 01123444555554 4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCC
Q 042941 116 VHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
.|+...++.+++.+...|..|.
T Consensus 258 ~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 258 EGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred ccCHHHHHHHHHHHHHcCCCHH
Confidence 5788899999998888775553
No 458
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.47 E-value=2.4e+02 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=16.9
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042941 206 YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 241 (481)
|.+.....++..|. .+++++|.+++.++-+.|..|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 34444444444332 334555555555555555443
No 459
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.39 E-value=4e+02 Score=26.84 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
...++.+. ..|+...++.+++.+.+.|..|.
T Consensus 250 vf~Lidal-~~~d~~~al~~l~~L~~~g~~~~ 280 (585)
T PRK14950 250 VKALAEAL-LAKDLKAALRTLNAVAADGADLR 280 (585)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33455544 45788888888888887775443
No 460
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.20 E-value=4.4e+02 Score=27.21 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=69.5
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
|.-+.+.+.+++|+++.+..... .|...........|..+...|+.++|-...-.|... +..-|..-+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45567788899999888776543 333233567778888888899999998888887652 555666666667776
Q ss_pred CChhhHHHHHhhccCCCC-CchHhHHHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFP-FNTKSFNIILNGWC 183 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~ 183 (481)
++....-.+ ++.+.+ .+...|..++..+.
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L 466 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFL 466 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHH
Confidence 665443332 233322 46677888888777
No 461
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.76 E-value=4.3e+02 Score=27.01 Aligned_cols=121 Identities=8% Similarity=-0.123 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
....|......+ .++...+.++...+ ....+ ..-..|..+...+. ...+++....+++-... +.....-..
T Consensus 33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~-----P~~~~Lr~~ 104 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTL-----PPARSLQSR 104 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCC-----chHHHHHHH
Confidence 345666666666 35666655555544 22221 11222222222211 22445555555444332 222333334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
.+..+.+.+++...+..+.. .+.+...-.....+....|+.++|......
T Consensus 105 ~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555566666666653211 123444444556666666766655544444
No 462
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=38.89 E-value=3.1e+02 Score=25.12 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=20.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHh
Q 042941 20 NKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWA 55 (481)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 55 (481)
....+.|..++......++..+.++...+..-++.+
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL 186 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKL 186 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 334456666666666666666655554444444444
No 463
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.78 E-value=1.9e+02 Score=22.60 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 335 SMRKMGCQPTNDTYIMLIKKFSRW-RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|-.--+..+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555666555432 333444433 4566777777777776655555554445555665554
No 464
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=38.58 E-value=3.7e+02 Score=25.95 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (481)
.++. +...++.+.|+.+++.+...|..|
T Consensus 253 ~L~~-ai~~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 253 TLDE-AITTQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHHcCcCH
Confidence 4554 446688889999888888777554
No 465
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.47 E-value=3.8e+02 Score=26.92 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
.++. ....++...++.+++.+...|..|.
T Consensus 251 ~lv~-al~~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 251 DAVD-ALAADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 3444 3455788888888888887765443
No 466
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.94 E-value=3.5e+02 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG 137 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (481)
..+..++.+. ..++...|+.+++.+...|..|.
T Consensus 249 ~~iF~L~dai-~~~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 249 DYYFRLTDAL-LAGKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 3344444444 44678888888888887775543
No 467
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=37.83 E-value=5.2e+02 Score=27.39 Aligned_cols=33 Identities=3% Similarity=-0.145 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV 136 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (481)
......++.+.. .++...++.+++++.+.|..+
T Consensus 248 ~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 248 SALIDEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 344445555554 467778888888888776543
No 468
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.80 E-value=36 Score=17.54 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 042941 191 EAERVWMEM 199 (481)
Q Consensus 191 ~a~~~~~~~ 199 (481)
.|..+|+.+
T Consensus 5 ~~r~i~e~~ 13 (33)
T smart00386 5 RARKIYERA 13 (33)
T ss_pred HHHHHHHHH
Confidence 333333333
No 469
>PHA03100 ankyrin repeat protein; Provisional
Probab=37.76 E-value=3.9e+02 Score=25.89 Aligned_cols=156 Identities=9% Similarity=0.058 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh--HHHHHHH-----HHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED--FQGLLSA-----LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
+.+...+..|+.+-+..++ +.|..|+... ....+.. .+..+..+-+.-+++.-.....++....+.+..
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~ 112 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence 3444455666655444444 4454444322 1223344 455555555555544322222333334445554
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcC
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVS--FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY--NAVIHALAKG 256 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~ 256 (481)
+.....|+.+ +++.+.+.|..++... -...+..++..|. .-.++++.+.+.|..++.... .+.+...+..
T Consensus 113 A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 113 AISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred HHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 4310234433 3333444554443221 1233444455551 112334444455544432211 1234444455
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 042941 257 RLVKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~~ 277 (481)
|+.+ +.+.+.+.|..++
T Consensus 187 ~~~~----iv~~Ll~~ga~~~ 203 (480)
T PHA03100 187 GNID----VIKFLLDNGADIN 203 (480)
T ss_pred CCHH----HHHHHHHcCCCcc
Confidence 5443 3444445555444
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.40 E-value=2.5e+02 Score=25.19 Aligned_cols=71 Identities=13% Similarity=0.022 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH----------cCCCh
Q 042941 85 WALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC----------RYKNV 154 (481)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~ 154 (481)
.++|+.+.+.++.|. ..++.-+.-.+.+.=.+..++.+|+.+..... -|..|+..|| -.|++
T Consensus 263 ~EL~~~L~~~~i~Pq---fyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF 334 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQ---FYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDF 334 (370)
T ss_pred HHHHHHHHhcCCCcc---chhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcch
Confidence 567777777788887 66666666566666677888888888776321 2445555444 35778
Q ss_pred hhHHHHHhh
Q 042941 155 QDAEHLMFC 163 (481)
Q Consensus 155 ~~a~~~~~~ 163 (481)
..-.++++.
T Consensus 335 ~~nmkLLQ~ 343 (370)
T KOG4567|consen 335 TVNMKLLQN 343 (370)
T ss_pred HHHHHHHhc
Confidence 877777764
No 471
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.39 E-value=1.4e+02 Score=20.83 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 298 (481)
+.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| ...|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 4455666666663 233333333333335677778888887777 53 346677777777766655543
No 472
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.20 E-value=1.5e+02 Score=21.12 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC
Q 042941 17 EMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE 95 (481)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 95 (481)
.....+++.| ++...+..+-...+++.+...+.+.....+.|- ..+++.|+.++...|.-..|..+-+.+...|
T Consensus 21 ~Wk~laR~LG--Lse~~I~~i~~~~~~~~eq~~qmL~~W~~~~G~---~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 21 SWNRLMRQLG--LSENEIDVAKANERVTREQLYQMLLTWVNKTGR---KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHCCCCHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 4445556666 466666666665555555566666655555552 4457778888877777777777766665543
No 473
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.08 E-value=2.6e+02 Score=23.77 Aligned_cols=55 Identities=9% Similarity=-0.041 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH----HHHHhcCCHHHHHHHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII----SCYSKARNLHKVLRLFDQ 233 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~ 233 (481)
-|.... ..|+.++|++....+...-+..|...+-.+. --..+.|..++|+++.+.
T Consensus 70 ~Ir~~I-~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAI-EEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHH-HhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344445 5666666666666554332222322221111 113445555555555543
No 474
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.02 E-value=4.4e+02 Score=26.32 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHh-------cCCcccHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 186 IGSSREAERVWMEMSQ-------RGICYDVVSFSCIISCYSKAR-----NLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
..+.+.|...|..... .| ......-+..+|.+.. +...|..++...-+.| .|+....-..+...
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 4455555555555544 44 2234455555665532 6778999998888887 44554443333333
Q ss_pred Hc-CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCC
Q 042941 254 AK-GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC--KARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 254 ~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~ 309 (481)
.. ..+...|.++|...-+.|.. ....+..++.... ...+.+.|..++++.-++|.
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 33 24678999999999888754 2222222222111 23478889999999888873
No 475
>PRK09857 putative transposase; Provisional
Probab=36.88 E-value=3.1e+02 Score=24.56 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=14.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRMGIEC 241 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~~~~~ 241 (481)
..-+...|.-+++.++...|...|+.+
T Consensus 247 AEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 247 AERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 333344444455566666666666543
No 476
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=36.73 E-value=4.1e+02 Score=25.84 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh-cCCHHHHHHHH
Q 042941 48 AFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-VHDVGRAINAF 126 (481)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-~~~~~~a~~~~ 126 (481)
...+++....+ ++.|+..|...+..+-+.+.+.+...+|..|... .|+ ++..|.....-... +-+++.|..+|
T Consensus 90 Iv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--Hp~--~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 90 IVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--HPN--NPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CCC--CchhHHhhhhhHHhhccchHHHHHHH
Confidence 44555555433 3459999999999999999999999999999886 333 35555544433333 33488899998
Q ss_pred HHHhhcC
Q 042941 127 YAYKRFK 133 (481)
Q Consensus 127 ~~~~~~~ 133 (481)
...++.+
T Consensus 164 lrgLR~n 170 (568)
T KOG2396|consen 164 LRGLRFN 170 (568)
T ss_pred HHHhhcC
Confidence 8877654
No 477
>TIGR00059 L17 ribosomal protein L17. Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model.
Probab=36.70 E-value=1.7e+02 Score=21.60 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 382 SYTALIHALFLNGKL-------EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
.+..++..+.+.|++ .++..+.++|+..+-..+......+...+.......+.+..+-....+.+..|.-+.+
T Consensus 15 llrnl~tsLi~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rR~~~~~l~~~~~v~KLf~~lapry~~R~GGYTRI~k 94 (112)
T TIGR00059 15 LLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREAKAYIRNKEIVHKLFSEIAPRYAQRPGGYTRILK 94 (112)
T ss_pred HHHHHHHHHHHCCeEEECHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 455566667777653 4666678888887777888888888888888888888888888888899999988877
Q ss_pred ccccchh
Q 042941 455 KSDQDRE 461 (481)
Q Consensus 455 ~~~~~~~ 461 (481)
+-.+.|+
T Consensus 95 l~~R~gD 101 (112)
T TIGR00059 95 LGPRRGD 101 (112)
T ss_pred CCCCCCC
Confidence 7666664
No 478
>PRK13456 DNA protection protein DPS; Provisional
Probab=36.57 E-value=2.4e+02 Score=23.14 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCcc
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQ 444 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
....++....... ..|+..|+++.+.--.-|+.|+.++...+.....++.-++.+....|.
T Consensus 107 dv~~mL~~~L~AE--r~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~~ 167 (186)
T PRK13456 107 DPKEILKVLLEAE--RCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFSELLGGGPS 167 (186)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555555543 468888888877633569999999999999999999989888887775
No 479
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.20 E-value=3.8e+02 Score=25.30 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQR--GICYD-VVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
.--|++... -.|+.....+.++.|+.. |..|. .+| --+.-+|.-.|++.+|.+.|-....
T Consensus 238 L~GLlR~H~-lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHI-LLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHH-HhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555 567777777777766553 22232 223 3355677777888888888766543
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.84 E-value=1.9e+02 Score=25.03 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=31.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHc----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 248 AVIHALAKGRLVKDAISLMKSMEEK----G-VAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
.+...|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+--+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556667777777777777766321 1 1223334445555666666666665554443
No 481
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.64 E-value=2.9e+02 Score=23.80 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=29.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHH---HHHcCCChHHHHHHHHHHHHcC
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNA---VIH---ALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~---~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
-+..+++.+|+++|++.-...+..+..-|.. ++. ++.-..+.-.+...++...+..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 4456778888888888776654433332321 111 1122244445555556555543
No 482
>PRK14136 recX recombination regulator RecX; Provisional
Probab=35.28 E-value=3.3e+02 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=8.7
Q ss_pred HHHHhcCCChhHHHHHHHhcC
Q 042941 6 DILREFSHKRSEMRNKIEECG 26 (481)
Q Consensus 6 ~~~~~~~~~a~~~~~~~~~~~ 26 (481)
.+|.....+..+|...|++.|
T Consensus 170 ~lLSrReRSe~ELr~KL~kkG 190 (309)
T PRK14136 170 GYLSRREYSRAELARKLAPYA 190 (309)
T ss_pred HHhhcccccHHHHHHHHHHcC
Confidence 333444444444444444433
No 483
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.05 E-value=3.9e+02 Score=25.10 Aligned_cols=56 Identities=14% Similarity=0.018 Sum_probs=33.5
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhc
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYC--AVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 132 (481)
+.+.+++..|.++|+.+..+ +.++.. ...+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34677788888888877776 444421 234444444443 345677777777766543
No 484
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.96 E-value=41 Score=30.29 Aligned_cols=90 Identities=10% Similarity=-0.018 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI 123 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~ 123 (481)
..+.|++.|...+... +++...|..-.+++.+.+++..|++=++...+. ++.+..-|-.--.+....|+|++|-
T Consensus 129 ~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI----NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred chhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc----CcccccccchhhHHHHHhhchHHHH
Confidence 3444555554443222 244455555555666666666666555555544 2222333333334444456666666
Q ss_pred HHHHHHhhcCCCCCHH
Q 042941 124 NAFYAYKRFKFAVGIE 139 (481)
Q Consensus 124 ~~~~~~~~~~~~~~~~ 139 (481)
..+....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 6666665555444443
No 485
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.81 E-value=3.3e+02 Score=24.24 Aligned_cols=72 Identities=8% Similarity=0.061 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhc----CCCCCCcccHHHHHHHHH---HHHhcCCHHHHHHHHHHHh
Q 042941 58 QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRG----GETGPSLVTKQTLLILIR---RYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 58 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~~~ 130 (481)
..|-.--..++..+...|++.++.+.+.+...+..+ .|.+.| .+...|+ .|....-+++.++..+.+.
T Consensus 108 dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiD-----v~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 108 DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKID-----VFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchh-----hHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 344444566777777777777777776666655433 333333 3333332 2223333455556666666
Q ss_pred hcCC
Q 042941 131 RFKF 134 (481)
Q Consensus 131 ~~~~ 134 (481)
+.|.
T Consensus 183 EkGg 186 (412)
T COG5187 183 EKGG 186 (412)
T ss_pred HhCC
Confidence 5553
No 486
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.74 E-value=2.1e+02 Score=26.98 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--C----C-cccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQR--G----I-CYDVVSFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
...+++..+ -.|++..|+++++.+.-. + + .-...++--+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~-LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHC-LLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHH-hccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666 667777777776644221 1 1 1123345556666777777777777776654
No 487
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=34.53 E-value=5e+02 Score=26.22 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=12.1
Q ss_pred hcCCHHHHHHHHHHHhhcCCC
Q 042941 115 AVHDVGRAINAFYAYKRFKFA 135 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~ 135 (481)
..++...++.++..+...|..
T Consensus 257 ~~kd~~~al~~l~~Ll~~ge~ 277 (605)
T PRK05896 257 QKNDIEELRNLINELESKGIN 277 (605)
T ss_pred HCCCHHHHHHHHHHHHHcCCC
Confidence 345666666666666655543
No 488
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.48 E-value=1.9e+02 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.|..|+.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.41 E-value=2.4e+02 Score=24.46 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRM----G-IECDRKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
.-.+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667788899999999999887532 2 2334455666777788888888777665544
No 490
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.95 E-value=2.6e+02 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
+++|...|++..+. .|+..+|+.-+... .+|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 34444444444443 46666666665554 23444555554443
No 491
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.88 E-value=5.4e+02 Score=26.46 Aligned_cols=250 Identities=9% Similarity=0.040 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhH-HHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcC---------
Q 042941 188 SSREAERVWMEMSQRGICYDVVSF-SCIISCYSKARNLHKVLRLFDQMK-RMGIECDRKVYNAVIHALAKG--------- 256 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~--------- 256 (481)
+..+.+...+.+.+..-.|+..+- -.+-+.|...|++++|+++--... ...+.++...+.+++.-|...
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Q ss_pred CChH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH
Q 042941 257 RLVK-------DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV 329 (481)
Q Consensus 257 g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 329 (481)
+..+ +-..++++|..... +..-|..+|.......+++...+. .|......-+....-.+........+.
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl--~d~e~~~aiGia~E~~rld~ie~A--il~~d~~~~~~~yll~l~~s~v~~~ef 193 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCL--DDNEYKQAIGIAFETRRLDIIEEA--ILKSDSVIGNLTYLLELLISLVNNREF 193 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhh--hhhHHHHHHhHHhhhhhHHHHHHH--hccccccchHHHHHHHHHHHHHhhHHH
Q ss_pred -HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 330 -FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 330 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.++++.+.+.=.+-...-|..+.++|.-..+.+.+.++++++.+ +.+...-..+..-+..+-..+=-..+.+.|..
T Consensus 194 R~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~---e~~~llayQIAFDL~esasQefL~~v~~~l~~ 270 (929)
T KOG2062|consen 194 RNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK---EDDLLLAYQIAFDLYESASQEFLDSVLDRLPA 270 (929)
T ss_pred HHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh---cchhhhHHHHHHHHhhccCHHHHHHHHHHccc
Q ss_pred CCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccC
Q 042941 409 KQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQS 445 (481)
Q Consensus 409 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 445 (481)
. -.-+......+++.+....-.+-..+-+.+++-.+
T Consensus 271 d-~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD 306 (929)
T KOG2062|consen 271 D-DARDEKPMEKIISILSGEETIKLYLQFLLRHNNTD 306 (929)
T ss_pred c-cccccChHHHHHHHhcCchHHHHHHHHHHHcCCch
No 492
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.76 E-value=1.3e+02 Score=20.06 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=12.9
Q ss_pred hhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 155 QDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
+.|..++..++.....++..||++...+
T Consensus 14 EmA~~mL~DLr~dekRsPQLYnAI~k~L 41 (82)
T PF11123_consen 14 EMAQQMLADLRDDEKRSPQLYNAIGKLL 41 (82)
T ss_pred HHHHHHHHHhcchhhcChHHHHHHHHHH
Confidence 3444444444444444455555544443
No 493
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.44 E-value=2.3e+02 Score=22.09 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 291 (481)
.-.|.++++.+.+.+...+..|--..+..+...
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~ 65 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 444555555555444433433333333333333
No 494
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.34 E-value=4.3e+02 Score=25.59 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=70.2
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhh--hCCCCCCCH-----HHHHHHHHHHhccCChhHHHHHH
Q 042941 16 SEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAG--KQSGYAHST-----REYHTMIAILGKVRKFDTAWALI 88 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~--~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~ 88 (481)
+++...|...+-.+..-.+.+-+....++...|..++.... +..|...+. ..||.+.-++.+.|.+.-+..+|
T Consensus 227 revK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F 306 (696)
T KOG2471|consen 227 REVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLF 306 (696)
T ss_pred HhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHH
Confidence 34444455445444444444445545677777776665543 333433332 22355555666666666665555
Q ss_pred HHHh-------cCCCCCCccc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 042941 89 DEMR-------GGETGPSLVT--------KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC 149 (481)
Q Consensus 89 ~~~~-------~~~~~p~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 149 (481)
.... ..|++|.+.- ..+|| ..-.|...|++-.|.+.|.+.... ...++..|..+..+|.
T Consensus 307 ~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 307 LKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 5544 3455554220 11222 223456667777777777766643 3456677777777665
No 495
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=6.8e+02 Score=27.43 Aligned_cols=181 Identities=10% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh-----HHHH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED-----FQGL 144 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l 144 (481)
.+..+|...|...+|+..|.+.... ...++.|-+.-...+- ..--...|-.|++.- |...
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg--------~ge~~aL~~lv~~~~p-------~~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG--------FGEGNALRKLVYFLLP-------KRFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc--------cccHHHHHHHHHHhcC-------CCCchhcCCCCCchHHHHHHHHHH
Q ss_pred HHHHHcCCChhhHHHHH----hhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh
Q 042941 145 LSALCRYKNVQDAEHLM----FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK 220 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 220 (481)
++.+-+.+..+.+.++- +.+....|.-..+++.+.+... ..|.+.+|...+-.-.+. ..-......++..+..
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhl-dlgh~~qAy~ai~~npds--errrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHL-DLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhh-chhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHh
Q ss_pred cCCH------------HHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 221 ARNL------------HKVLR-LFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 221 ~~~~------------~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
.|.+ ++... +++..-+.........|..|-..+...+++.+|-.+.-+
T Consensus 1067 cg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1067 CGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred ccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
No 496
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=33.28 E-value=4.8e+02 Score=25.67 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=59.8
Q ss_pred HHHHHhcCC------ChhHHHHH----HHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 042941 5 VDILREFSH------KRSEMRNK----IEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAI 74 (481)
Q Consensus 5 ~~~~~~~~~------~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 74 (481)
.+++++|-. +..++... +.+.|+..+...+.-+.....+...+++.+++.+....+ +..++..+-..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~---~~It~~~v~~~ 240 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE---GEITLESVRDM 240 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC---CcccHHHHHHH
Confidence 356666653 33344443 457889999999999988888899999999999974432 11122222211
Q ss_pred H--------------hccCChhHHHHHHHHHhcCCCCCC
Q 042941 75 L--------------GKVRKFDTAWALIDEMRGGETGPS 99 (481)
Q Consensus 75 ~--------------~~~g~~~~a~~~~~~~~~~~~~p~ 99 (481)
+ .-.++...+...++++.+.|..|.
T Consensus 241 lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~ 279 (515)
T COG2812 241 LGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPE 279 (515)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHH
Confidence 1 235677788888888887776554
No 497
>PRK10941 hypothetical protein; Provisional
Probab=33.25 E-value=3.4e+02 Score=23.95 Aligned_cols=61 Identities=8% Similarity=-0.142 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 348 YIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
.+.+-.+|.+.++++.|++..+.+..... .++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45667788999999999999999988543 25555666677789999999999988888765
No 498
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.23 E-value=6.3e+02 Score=27.03 Aligned_cols=30 Identities=7% Similarity=-0.009 Sum_probs=16.5
Q ss_pred cCCCCCHHHHHHHHHHhhcCHHHHHHHHHH
Q 042941 25 CGIKVSSELVSEVLSWVRNDWEAAFTFFLW 54 (481)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 54 (481)
.|+..+...+..+.....++...|+.+++.
T Consensus 194 EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 194 EQLPFEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 355555555555555555555555555543
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.26 E-value=1.5e+02 Score=19.39 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHH
Q 042941 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFV 431 (481)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 431 (481)
|....++.++..+++..-.++++.++.++.+.|. .+..+|.--.+.+++....
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~ 58 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFL 58 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777777777764 4455555444455444433
No 500
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.05 E-value=4.5e+02 Score=24.91 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISEN------GNGP-DRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+...|++.++-.|++..|+++++.+.-. .+++ ...+|-.+.-+|.-.+++.+|++.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777655321 1111 2335556666777777777777777654
Done!