Query 042941
Match_columns 481
No_of_seqs 528 out of 3223
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 19:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.9E-34 1.7E-38 282.3 40.3 428 14-458 102-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-34 4.3E-39 286.5 31.6 430 29-474 82-578 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.7E-32 1.6E-36 257.2 23.5 219 82-328 7-225 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.4E-31 4.7E-36 254.1 25.7 207 191-429 8-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-26 1.9E-30 212.0 39.0 353 42-408 12-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.9E-24 1.7E-28 198.8 41.5 366 14-395 17-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.7E-22 5.9E-27 192.3 37.4 314 63-417 24-364 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.9E-21 2E-25 181.7 32.6 360 83-475 10-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.6E-20 5.5E-25 181.8 35.8 396 42-452 19-489 (514)
10 2gw1_A Mitochondrial precursor 99.9 4E-20 1.4E-24 179.0 34.3 397 65-473 6-476 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 9.2E-19 3.1E-23 161.0 39.2 313 64-417 2-341 (359)
12 3fp2_A TPR repeat-containing p 99.9 7.7E-20 2.6E-24 178.1 29.5 388 42-446 38-496 (537)
13 3fp2_A TPR repeat-containing p 99.9 1.6E-18 5.4E-23 168.8 38.5 385 13-417 42-497 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 2.8E-17 9.4E-22 151.1 36.9 307 42-392 16-352 (359)
15 3hym_B Cell division cycle pro 99.8 3.3E-18 1.1E-22 155.4 30.1 286 63-390 20-314 (330)
16 3hym_B Cell division cycle pro 99.8 1.5E-17 5E-22 151.1 29.0 291 103-425 22-314 (330)
17 1fch_A Peroxisomal targeting s 99.8 8.8E-18 3E-22 155.2 25.9 298 43-370 39-355 (368)
18 1fch_A Peroxisomal targeting s 99.8 4.6E-18 1.6E-22 157.1 23.9 290 76-405 36-355 (368)
19 4eqf_A PEX5-related protein; a 99.8 2E-17 6.8E-22 152.7 22.3 278 64-370 64-352 (365)
20 4eqf_A PEX5-related protein; a 99.8 2.9E-17 1E-21 151.5 23.0 266 103-405 65-352 (365)
21 3spa_A Mtrpol, DNA-directed RN 99.8 4.5E-19 1.5E-23 173.3 11.0 118 208-325 127-248 (1134)
22 3cv0_A Peroxisome targeting si 99.8 2.1E-16 7.3E-21 143.2 25.9 278 66-406 22-312 (327)
23 3cv0_A Peroxisome targeting si 99.8 1.7E-16 5.8E-21 143.8 25.0 277 42-371 34-312 (327)
24 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.7E-20 146.2 31.6 388 62-474 48-458 (472)
25 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-18 1.9E-22 165.7 15.3 136 277-445 126-262 (1134)
26 3mkr_A Coatomer subunit epsilo 99.8 2.3E-15 7.8E-20 133.5 29.8 275 111-436 7-286 (291)
27 1b89_A Protein (clathrin heavy 99.8 4.4E-17 1.5E-21 147.7 18.4 292 30-368 5-305 (449)
28 2xm6_A Protein corresponding t 99.8 2.3E-13 7.9E-18 130.6 45.4 337 42-412 56-435 (490)
29 2xm6_A Protein corresponding t 99.7 3.8E-14 1.3E-18 136.0 39.4 376 48-460 26-454 (490)
30 1b89_A Protein (clathrin heavy 99.7 1.9E-16 6.4E-21 143.6 16.5 320 77-444 15-344 (449)
31 3mkr_A Coatomer subunit epsilo 99.7 2E-14 6.7E-19 127.4 28.7 247 42-308 12-265 (291)
32 1xi4_A Clathrin heavy chain; a 99.7 1.8E-13 6.3E-18 138.5 37.4 389 30-479 984-1386(1630)
33 2ooe_A Cleavage stimulation fa 99.7 7.4E-13 2.5E-17 128.4 40.7 402 30-445 12-496 (530)
34 2pl2_A Hypothetical conserved 99.7 8.8E-15 3E-19 123.9 20.0 210 62-304 2-211 (217)
35 2ooe_A Cleavage stimulation fa 99.7 5.4E-12 1.9E-16 122.3 41.7 384 14-409 30-492 (530)
36 4g1t_A Interferon-induced prot 99.7 1.5E-13 5.2E-18 131.3 30.4 269 38-310 60-366 (472)
37 1xi4_A Clathrin heavy chain; a 99.7 1.6E-11 5.4E-16 124.7 45.2 342 42-442 1034-1382(1630)
38 3uq3_A Heat shock protein STI1 99.7 2.9E-14 1E-18 124.2 22.6 226 65-307 5-236 (258)
39 2pl2_A Hypothetical conserved 99.6 3.2E-14 1.1E-18 120.4 19.7 196 136-337 3-209 (217)
40 3uq3_A Heat shock protein STI1 99.6 7E-14 2.4E-18 121.8 22.3 224 103-408 5-235 (258)
41 2ho1_A Type 4 fimbrial biogene 99.6 4.1E-13 1.4E-17 116.6 25.9 200 65-272 37-238 (252)
42 2vq2_A PILW, putative fimbrial 99.6 6.2E-13 2.1E-17 113.1 24.8 199 65-270 8-209 (225)
43 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 116.4 24.1 202 103-308 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.6 5.8E-13 2E-17 113.3 24.2 210 102-316 7-218 (225)
45 2q7f_A YRRB protein; TPR, prot 99.6 9.4E-14 3.2E-18 119.9 19.0 202 63-272 21-222 (243)
46 3u4t_A TPR repeat-containing p 99.6 3.9E-13 1.3E-17 118.2 23.3 234 67-307 5-250 (272)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.9E-18 121.8 19.6 225 77-307 17-244 (275)
48 3u4t_A TPR repeat-containing p 99.6 8.7E-13 3E-17 115.9 24.5 240 140-417 5-256 (272)
49 2h6f_A Protein farnesyltransfe 99.6 9.7E-13 3.3E-17 120.6 23.6 233 65-307 97-348 (382)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-13 5.4E-18 120.9 17.3 246 43-301 19-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.6 5.1E-13 1.7E-17 115.2 20.1 202 102-308 22-223 (243)
52 1ouv_A Conserved hypothetical 99.5 1.4E-11 4.8E-16 108.3 29.3 224 64-308 5-252 (273)
53 1ouv_A Conserved hypothetical 99.5 1.6E-11 5.5E-16 107.9 29.3 189 174-410 40-252 (273)
54 2h6f_A Protein farnesyltransfe 99.5 2E-12 6.9E-17 118.4 22.7 252 100-391 94-364 (382)
55 4a1s_A PINS, partner of inscut 99.5 1.1E-12 3.6E-17 122.9 18.3 209 172-409 126-372 (411)
56 2ond_A Cleavage stimulation fa 99.5 3.3E-11 1.1E-15 107.9 27.3 220 82-308 33-271 (308)
57 3e4b_A ALGK; tetratricopeptide 99.5 1.5E-11 5E-16 116.2 25.2 337 42-411 16-389 (452)
58 3sf4_A G-protein-signaling mod 99.5 8.5E-13 2.9E-17 123.3 16.6 303 63-396 7-363 (406)
59 3sf4_A G-protein-signaling mod 99.5 3.2E-12 1.1E-16 119.3 19.5 277 103-409 9-336 (406)
60 2ond_A Cleavage stimulation fa 99.5 7.4E-11 2.5E-15 105.6 27.0 221 46-274 33-272 (308)
61 3ro2_A PINS homolog, G-protein 99.5 2.4E-12 8.3E-17 116.6 17.6 271 109-409 11-332 (338)
62 4a1s_A PINS, partner of inscut 99.5 1.8E-12 6E-17 121.4 16.9 279 65-374 48-372 (411)
63 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.5E-16 101.4 19.5 166 64-236 4-169 (184)
64 4abn_A Tetratricopeptide repea 99.4 6.6E-12 2.2E-16 119.4 19.4 214 81-304 84-318 (474)
65 3vtx_A MAMA; tetratricopeptide 99.4 2.9E-11 1E-15 99.2 20.7 166 103-272 5-170 (184)
66 3ro2_A PINS homolog, G-protein 99.4 2.4E-12 8.3E-17 116.6 15.1 278 66-374 6-332 (338)
67 3ulq_A Response regulator aspa 99.4 3.7E-11 1.3E-15 111.3 21.4 233 144-408 109-367 (383)
68 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-12 8.1E-17 115.5 12.8 241 64-306 26-306 (311)
69 4abn_A Tetratricopeptide repea 99.4 1.8E-11 6.1E-16 116.4 19.4 213 118-336 83-315 (474)
70 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-11 8.6E-16 108.7 16.9 239 168-408 23-306 (311)
71 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 9.8E-15 93.1 21.6 163 140-306 10-172 (186)
72 3ulq_A Response regulator aspa 99.3 1.4E-10 4.6E-15 107.5 21.1 309 30-373 8-367 (383)
73 1hz4_A MALT regulatory protein 99.3 9.2E-10 3.1E-14 101.4 26.1 267 112-408 23-321 (373)
74 3e4b_A ALGK; tetratricopeptide 99.3 5.3E-11 1.8E-15 112.4 17.0 312 71-411 9-353 (452)
75 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 8.8E-15 93.4 18.4 163 106-272 11-173 (186)
76 3q15_A PSP28, response regulat 99.3 9.3E-10 3.2E-14 101.6 23.9 313 62-408 7-364 (378)
77 1hz4_A MALT regulatory protein 99.3 3.9E-09 1.3E-13 97.2 26.2 305 68-409 17-349 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-10 1.1E-14 112.4 19.4 165 103-271 9-173 (723)
79 4e6h_A MRNA 3'-END-processing 99.2 1.8E-07 6.1E-12 91.7 38.0 417 17-446 54-575 (679)
80 4e6h_A MRNA 3'-END-processing 99.2 3E-07 1E-11 90.1 38.9 403 14-425 84-584 (679)
81 4gyw_A UDP-N-acetylglucosamine 99.2 4.7E-10 1.6E-14 111.1 19.0 166 137-306 8-173 (723)
82 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.3E-14 92.3 19.5 133 103-237 7-146 (228)
83 3edt_B KLC 2, kinesin light ch 99.2 3.5E-10 1.2E-14 99.6 14.6 229 77-307 13-281 (283)
84 4i17_A Hypothetical protein; T 99.2 4.6E-09 1.6E-13 89.3 19.6 196 63-273 5-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 8.1E-10 2.8E-14 97.2 15.4 158 114-272 12-198 (283)
86 3q15_A PSP28, response regulat 99.1 6.6E-09 2.2E-13 95.9 21.6 233 70-306 106-364 (378)
87 3mv2_B Coatomer subunit epsilo 99.1 5.4E-08 1.9E-12 84.6 24.0 250 110-417 20-288 (310)
88 2fo7_A Synthetic consensus TPR 99.1 2.3E-08 7.9E-13 76.7 18.0 130 174-307 3-132 (136)
89 3qky_A Outer membrane assembly 99.0 6.3E-09 2.1E-13 90.6 15.9 189 63-272 13-224 (261)
90 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6.2E-13 77.3 15.9 126 144-272 7-132 (136)
91 3urz_A Uncharacterized protein 99.0 1.6E-08 5.4E-13 84.5 15.9 112 66-182 5-132 (208)
92 3mv2_B Coatomer subunit epsilo 99.0 5.3E-07 1.8E-11 78.4 25.3 209 73-306 21-239 (310)
93 3urz_A Uncharacterized protein 99.0 5.8E-08 2E-12 81.1 18.4 133 249-419 60-194 (208)
94 3qky_A Outer membrane assembly 99.0 1.1E-07 3.6E-12 82.7 20.1 187 101-308 13-225 (261)
95 3dra_A Protein farnesyltransfe 99.0 4.6E-07 1.6E-11 79.6 24.0 222 78-307 46-287 (306)
96 1qqe_A Vesicular transport pro 98.9 2.8E-08 9.7E-13 87.9 16.5 193 112-305 46-267 (292)
97 4ga2_A E3 SUMO-protein ligase 98.9 1E-08 3.5E-13 80.6 11.6 140 148-291 7-147 (150)
98 2pzi_A Probable serine/threoni 98.9 6.3E-08 2.1E-12 96.3 20.1 172 185-395 403-583 (681)
99 1qqe_A Vesicular transport pro 98.9 2.1E-08 7.2E-13 88.8 15.0 209 44-271 32-268 (292)
100 2r5s_A Uncharacterized protein 98.9 1.2E-08 4E-13 82.9 11.1 160 108-270 11-171 (176)
101 2r5s_A Uncharacterized protein 98.9 5.3E-08 1.8E-12 78.9 14.9 158 143-304 11-170 (176)
102 2pzi_A Probable serine/threoni 98.9 1.1E-08 3.9E-13 101.6 13.0 171 114-290 402-580 (681)
103 3qou_A Protein YBBN; thioredox 98.9 1.8E-07 6E-12 82.5 19.4 164 103-270 117-282 (287)
104 2uy1_A Cleavage stimulation fa 98.9 4.6E-06 1.6E-10 79.2 30.2 100 29-132 13-118 (493)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.1E-07 1.1E-11 77.7 19.3 189 64-274 3-215 (225)
106 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.8E-07 9.5E-12 78.0 18.8 186 103-308 4-214 (225)
107 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4E-13 80.3 9.4 19 111-129 39-57 (150)
108 2vsy_A XCC0866; transferase, g 98.8 9.9E-08 3.4E-12 93.1 17.6 152 79-237 3-157 (568)
109 2vsy_A XCC0866; transferase, g 98.8 1.5E-07 5.1E-12 91.9 18.5 155 116-274 2-159 (568)
110 3qou_A Protein YBBN; thioredox 98.8 9.4E-08 3.2E-12 84.2 14.7 167 135-305 114-282 (287)
111 3rjv_A Putative SEL1 repeat pr 98.8 1.1E-06 3.6E-11 73.6 19.9 174 48-238 5-198 (212)
112 3dra_A Protein farnesyltransfe 98.8 4.9E-06 1.7E-10 73.1 24.6 216 156-408 51-286 (306)
113 3rjv_A Putative SEL1 repeat pr 98.8 7.1E-07 2.4E-11 74.6 18.1 176 83-273 4-198 (212)
114 3q7a_A Farnesyltransferase alp 98.7 7.6E-06 2.6E-10 72.7 24.2 231 69-307 58-331 (349)
115 3u3w_A Transcriptional activat 98.7 1.9E-06 6.4E-11 76.2 20.3 135 19-163 34-180 (293)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 9.8E-07 3.4E-11 78.6 18.6 197 43-270 5-222 (307)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 2.9E-06 9.9E-11 75.0 20.4 96 174-270 157-264 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2.1E-06 7E-11 71.8 18.2 123 179-307 13-150 (213)
119 3u3w_A Transcriptional activat 98.6 1E-05 3.4E-10 71.5 22.5 161 145-306 82-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.2E-06 7.6E-11 71.6 17.2 127 68-203 9-151 (213)
121 2ifu_A Gamma-SNAP; membrane fu 98.6 7E-07 2.4E-11 79.5 14.0 191 68-264 39-253 (307)
122 1a17_A Serine/threonine protei 98.6 3.1E-06 1.1E-10 67.3 16.5 129 173-305 14-144 (166)
123 4f3v_A ESX-1 secretion system 98.6 1.4E-06 4.6E-11 74.9 14.5 187 77-272 18-237 (282)
124 3gyz_A Chaperone protein IPGC; 98.6 1.8E-06 6.3E-11 67.4 14.1 101 169-272 33-133 (151)
125 4gco_A Protein STI-1; structur 98.6 1.9E-06 6.6E-11 65.1 13.6 92 177-271 18-109 (126)
126 2qfc_A PLCR protein; TPR, HTH, 98.6 1.1E-05 3.6E-10 71.3 20.5 127 178-305 121-264 (293)
127 1p5q_A FKBP52, FK506-binding p 98.6 3.2E-07 1.1E-11 82.8 10.5 152 152-306 127-293 (336)
128 1a17_A Serine/threonine protei 98.6 1.5E-06 5.1E-11 69.2 13.4 127 105-234 15-143 (166)
129 4gco_A Protein STI-1; structur 98.5 9.1E-07 3.1E-11 66.9 11.5 97 104-202 14-110 (126)
130 1na0_A Designed protein CTPR3; 98.5 4.9E-06 1.7E-10 62.3 15.6 96 174-272 11-106 (125)
131 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 72.1 13.3 156 150-306 4-175 (203)
132 2lni_A Stress-induced-phosphop 98.5 1.7E-06 5.9E-11 65.8 12.9 96 64-164 15-110 (133)
133 2c2l_A CHIP, carboxy terminus 98.5 5.7E-07 2E-11 78.9 11.3 194 207-409 3-199 (281)
134 2vyi_A SGTA protein; chaperone 98.5 3E-06 1E-10 64.2 14.1 119 171-293 11-129 (131)
135 2c2l_A CHIP, carboxy terminus 98.5 5.6E-07 1.9E-11 79.0 10.9 194 103-307 4-199 (281)
136 2lni_A Stress-induced-phosphop 98.5 3.3E-06 1.1E-10 64.2 13.6 100 101-202 14-113 (133)
137 2uy1_A Cleavage stimulation fa 98.5 0.00092 3.1E-08 63.4 35.5 343 65-432 15-401 (493)
138 2e2e_A Formate-dependent nitri 98.5 2.3E-06 7.8E-11 69.2 13.2 121 185-308 22-145 (177)
139 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.4E-11 71.8 12.4 99 172-271 66-175 (203)
140 1na0_A Designed protein CTPR3; 98.5 3.8E-06 1.3E-10 62.9 13.5 26 105-130 11-36 (125)
141 3gyz_A Chaperone protein IPGC; 98.5 8E-07 2.7E-11 69.4 9.7 102 99-202 32-133 (151)
142 2vgx_A Chaperone SYCD; alterna 98.5 2.1E-06 7.1E-11 67.0 11.8 99 171-272 20-118 (148)
143 2e2e_A Formate-dependent nitri 98.5 1.5E-06 5.2E-11 70.2 11.2 122 149-273 21-145 (177)
144 2fbn_A 70 kDa peptidylprolyl i 98.4 7.6E-07 2.6E-11 73.6 9.3 156 148-306 14-185 (198)
145 3q7a_A Farnesyltransferase alp 98.4 5.2E-05 1.8E-09 67.3 21.2 221 43-272 68-331 (349)
146 2vyi_A SGTA protein; chaperone 98.4 2.7E-06 9.1E-11 64.4 11.6 97 103-201 12-108 (131)
147 2vgx_A Chaperone SYCD; alterna 98.4 1.4E-06 4.7E-11 68.1 10.0 99 102-202 20-118 (148)
148 2xcb_A PCRH, regulatory protei 98.4 6.3E-06 2.1E-10 63.8 12.6 99 171-272 17-115 (142)
149 4f3v_A ESX-1 secretion system 98.4 5.3E-06 1.8E-10 71.2 13.1 190 112-308 16-238 (282)
150 3dss_A Geranylgeranyl transfer 98.4 0.00049 1.7E-08 60.8 25.7 220 77-307 41-304 (331)
151 1p5q_A FKBP52, FK506-binding p 98.4 6.8E-06 2.3E-10 74.0 13.9 164 79-269 127-291 (336)
152 2fbn_A 70 kDa peptidylprolyl i 98.4 6.3E-07 2.2E-11 74.0 6.6 166 72-263 11-176 (198)
153 3upv_A Heat shock protein STI1 98.3 1.2E-05 4.2E-10 60.6 13.2 97 209-307 5-101 (126)
154 3upv_A Heat shock protein STI1 98.3 1.8E-05 6E-10 59.7 14.1 98 172-272 4-101 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.3 1.4E-05 4.9E-10 59.0 12.8 97 65-166 4-100 (118)
156 1elw_A TPR1-domain of HOP; HOP 98.3 4.3E-05 1.5E-09 56.3 15.3 94 175-271 7-100 (118)
157 2kck_A TPR repeat; tetratricop 98.3 1.5E-05 5.2E-10 58.3 12.2 98 172-272 6-106 (112)
158 2xcb_A PCRH, regulatory protei 98.3 2.1E-05 7E-10 60.8 13.4 98 208-307 18-115 (142)
159 3dss_A Geranylgeranyl transfer 98.3 0.00039 1.3E-08 61.4 22.7 205 224-453 90-316 (331)
160 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4E-10 61.6 11.7 97 103-201 9-105 (137)
161 2kck_A TPR repeat; tetratricop 98.3 8.4E-06 2.9E-10 59.7 10.5 99 64-167 5-106 (112)
162 3q49_B STIP1 homology and U bo 98.2 3.5E-05 1.2E-09 58.9 14.0 98 207-306 8-105 (137)
163 3sz7_A HSC70 cochaperone (SGT) 98.2 3.7E-05 1.3E-09 61.0 13.9 95 210-306 13-107 (164)
164 4gcn_A Protein STI-1; structur 98.2 3.8E-05 1.3E-09 57.9 13.1 98 209-307 9-112 (127)
165 3sz7_A HSC70 cochaperone (SGT) 98.2 5.3E-05 1.8E-09 60.1 14.5 101 170-273 9-109 (164)
166 2dba_A Smooth muscle cell asso 98.2 8.9E-05 3E-09 57.3 14.9 99 170-272 26-128 (148)
167 4gcn_A Protein STI-1; structur 98.1 3.3E-05 1.1E-09 58.3 11.7 24 107-130 12-35 (127)
168 1elr_A TPR2A-domain of HOP; HO 98.1 6.1E-05 2.1E-09 56.7 13.3 97 210-307 6-108 (131)
169 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.8E-09 68.7 17.6 201 180-408 12-244 (434)
170 2dba_A Smooth muscle cell asso 98.1 0.00011 3.7E-09 56.8 14.8 63 173-237 66-128 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.1 3.5E-05 1.2E-09 58.1 11.5 98 173-272 5-108 (131)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 7.4E-06 2.5E-10 77.2 8.6 131 171-304 267-412 (457)
173 1hxi_A PEX5, peroxisome target 98.1 4E-05 1.4E-09 57.2 11.1 91 214-306 23-113 (121)
174 4b4t_Q 26S proteasome regulato 98.1 0.00036 1.2E-08 65.2 20.2 198 72-270 11-243 (434)
175 1hxi_A PEX5, peroxisome target 98.1 2.3E-05 7.8E-10 58.6 9.1 93 68-165 20-112 (121)
176 3ro3_A PINS homolog, G-protein 98.0 6.8E-05 2.3E-09 58.9 11.0 133 173-306 10-157 (164)
177 1wao_1 Serine/threonine protei 98.0 3.9E-05 1.3E-09 72.6 10.8 118 181-302 15-134 (477)
178 2xev_A YBGF; tetratricopeptide 98.0 0.00043 1.5E-08 52.0 14.8 91 180-272 10-105 (129)
179 3ro3_A PINS homolog, G-protein 97.9 5.8E-05 2E-09 59.3 10.2 28 104-131 10-37 (164)
180 2xev_A YBGF; tetratricopeptide 97.9 0.00026 9E-09 53.2 12.9 63 174-237 41-105 (129)
181 2l6j_A TPR repeat-containing p 97.9 3.4E-05 1.2E-09 56.4 7.0 98 63-166 2-106 (111)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 0.00014 4.9E-09 68.4 12.8 130 103-234 268-412 (457)
183 3rkv_A Putative peptidylprolyl 97.9 0.00021 7.3E-09 56.4 12.1 63 244-307 64-126 (162)
184 1ihg_A Cyclophilin 40; ppiase 97.9 0.00011 3.8E-09 66.9 11.6 138 66-228 224-361 (370)
185 1wao_1 Serine/threonine protei 97.8 2.3E-05 8E-10 74.1 7.1 118 74-197 15-134 (477)
186 3k9i_A BH0479 protein; putativ 97.8 5.5E-05 1.9E-09 56.0 7.8 86 186-272 3-90 (117)
187 1ihg_A Cyclophilin 40; ppiase 97.8 0.00028 9.4E-09 64.3 13.8 121 174-297 225-360 (370)
188 3k9i_A BH0479 protein; putativ 97.8 2.2E-05 7.6E-10 58.2 5.0 52 79-131 4-55 (117)
189 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00011 3.8E-09 66.1 10.2 147 66-236 180-327 (338)
190 3rkv_A Putative peptidylprolyl 97.8 0.00061 2.1E-08 53.7 13.6 97 174-272 13-126 (162)
191 1dce_A Protein (RAB geranylger 97.7 0.0015 5.1E-08 63.1 17.6 169 82-258 46-241 (567)
192 2hr2_A Hypothetical protein; a 97.7 0.001 3.6E-08 51.4 12.3 95 211-306 14-130 (159)
193 3n71_A Histone lysine methyltr 97.6 0.00023 8E-09 67.0 10.4 133 252-409 318-464 (490)
194 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00017 5.7E-09 64.9 9.1 128 174-306 181-327 (338)
195 1dce_A Protein (RAB geranylger 97.6 0.0015 5.3E-08 62.9 16.1 175 117-296 43-244 (567)
196 3n71_A Histone lysine methyltr 97.6 0.00036 1.2E-08 65.7 11.2 123 185-307 321-464 (490)
197 2hr2_A Hypothetical protein; a 97.6 0.0014 4.8E-08 50.6 12.4 96 175-272 14-131 (159)
198 1klx_A Cysteine rich protein B 97.5 0.0047 1.6E-07 47.0 14.3 112 187-309 9-128 (138)
199 2l6j_A TPR repeat-containing p 97.5 0.0007 2.4E-08 49.1 8.9 65 207-272 3-67 (111)
200 1na3_A Designed protein CTPR2; 97.5 0.002 6.9E-08 44.5 11.0 62 210-272 11-72 (91)
201 1na3_A Designed protein CTPR2; 97.3 0.0014 5E-08 45.3 9.0 79 65-148 9-87 (91)
202 3ma5_A Tetratricopeptide repea 97.3 0.0015 5.1E-08 46.5 9.1 67 342-409 4-70 (100)
203 2kat_A Uncharacterized protein 97.3 0.0028 9.7E-08 46.3 10.7 78 227-306 4-81 (115)
204 1klx_A Cysteine rich protein B 97.3 0.0053 1.8E-07 46.7 12.4 111 117-238 9-127 (138)
205 2kat_A Uncharacterized protein 97.3 0.0023 7.7E-08 46.8 10.0 60 172-233 19-78 (115)
206 3ma5_A Tetratricopeptide repea 97.3 0.00088 3E-08 47.7 7.3 66 63-132 5-70 (100)
207 1zu2_A Mitochondrial import re 97.2 0.0016 5.5E-08 50.2 8.2 70 185-256 14-93 (158)
208 1zu2_A Mitochondrial import re 97.1 0.002 7E-08 49.6 7.8 105 220-328 14-139 (158)
209 3ly7_A Transcriptional activat 96.9 0.061 2.1E-06 47.8 16.9 78 342-423 274-351 (372)
210 2kc7_A BFR218_protein; tetratr 96.6 0.012 4.2E-07 41.3 8.6 59 351-410 6-65 (99)
211 1wy6_A Hypothetical protein ST 96.6 0.12 4E-06 38.0 13.1 140 254-412 18-157 (172)
212 3bee_A Putative YFRE protein; 96.5 0.052 1.8E-06 37.7 10.8 68 342-410 3-73 (93)
213 3ly7_A Transcriptional activat 96.5 0.14 4.9E-06 45.5 15.9 73 169-246 274-346 (372)
214 3qww_A SET and MYND domain-con 96.4 0.012 3.9E-07 54.5 9.2 86 186-271 311-410 (433)
215 2kc7_A BFR218_protein; tetratr 96.4 0.0046 1.6E-07 43.6 5.2 59 71-133 6-65 (99)
216 3bee_A Putative YFRE protein; 96.3 0.024 8.3E-07 39.4 8.4 67 63-133 4-73 (93)
217 3qwp_A SET and MYND domain-con 96.3 0.023 7.7E-07 52.6 10.2 85 220-304 299-397 (429)
218 3mkq_A Coatomer beta'-subunit; 96.2 0.19 6.5E-06 51.0 17.9 108 30-165 600-708 (814)
219 3qww_A SET and MYND domain-con 96.2 0.015 5E-07 53.8 8.3 87 220-306 310-410 (433)
220 1wy6_A Hypothetical protein ST 96.1 0.25 8.6E-06 36.3 13.7 63 211-274 94-156 (172)
221 3qwp_A SET and MYND domain-con 96.0 0.022 7.5E-07 52.7 8.7 93 179-272 294-400 (429)
222 2v5f_A Prolyl 4-hydroxylase su 95.8 0.14 4.8E-06 36.3 10.4 74 343-418 3-82 (104)
223 1pc2_A Mitochondria fission pr 95.6 0.13 4.3E-06 39.2 9.8 86 333-422 21-111 (152)
224 3mkq_B Coatomer subunit alpha; 95.3 0.58 2E-05 36.6 12.9 99 113-232 15-113 (177)
225 2v5f_A Prolyl 4-hydroxylase su 95.3 0.23 7.9E-06 35.1 10.1 63 210-272 7-75 (104)
226 3mkq_A Coatomer beta'-subunit; 95.3 0.29 1E-05 49.6 14.7 45 149-199 663-707 (814)
227 3mkq_B Coatomer subunit alpha; 94.6 1.2 4.2E-05 34.8 14.7 46 148-199 15-60 (177)
228 3u64_A Protein TP_0956; tetrat 94.6 1.9 6.5E-05 36.8 17.5 84 190-275 180-272 (301)
229 1pc2_A Mitochondria fission pr 94.3 0.35 1.2E-05 36.8 9.2 65 171-237 31-100 (152)
230 4h7y_A Dual specificity protei 94.3 0.46 1.6E-05 35.8 9.5 53 222-275 74-126 (161)
231 3u64_A Protein TP_0956; tetrat 94.1 0.62 2.1E-05 39.8 11.1 94 224-319 179-283 (301)
232 4gns_B Protein CSD3, chitin bi 93.6 0.63 2.1E-05 46.0 11.7 91 340-432 608-711 (754)
233 2ff4_A Probable regulatory pro 93.5 0.61 2.1E-05 42.4 11.1 79 347-426 173-256 (388)
234 4b4t_P 26S proteasome regulato 93.4 4.9 0.00017 37.2 19.0 188 43-235 30-245 (445)
235 4h7y_A Dual specificity protei 93.3 0.92 3.1E-05 34.2 9.4 104 207-312 12-128 (161)
236 1v54_E Cytochrome C oxidase po 93.0 0.37 1.3E-05 33.2 6.4 61 120-180 27-87 (109)
237 1nzn_A CGI-135 protein, fissio 92.7 1.5 5E-05 32.1 9.8 78 342-421 32-113 (126)
238 4ady_A RPN2, 26S proteasome re 92.7 9.5 0.00033 38.7 19.2 118 185-307 502-623 (963)
239 3lvg_A Clathrin heavy chain 1; 91.9 2.4E-05 8.1E-10 70.8 -19.5 223 65-326 54-276 (624)
240 2ff4_A Probable regulatory pro 91.8 0.62 2.1E-05 42.3 8.6 57 106-163 174-230 (388)
241 4gns_B Protein CSD3, chitin bi 91.0 1.8 6.2E-05 42.7 11.4 120 185-305 260-398 (754)
242 2y69_E Cytochrome C oxidase su 90.4 0.91 3.1E-05 33.2 6.4 59 122-180 72-130 (152)
243 1nzn_A CGI-135 protein, fissio 90.2 1.4 4.9E-05 32.1 7.5 20 252-271 83-102 (126)
244 4fhn_B Nucleoporin NUP120; pro 89.5 12 0.00042 39.4 17.0 81 211-293 902-986 (1139)
245 1v54_E Cytochrome C oxidase po 89.0 4.3 0.00015 28.1 10.1 64 360-424 25-88 (109)
246 2y69_E Cytochrome C oxidase su 88.6 5.8 0.0002 29.1 10.1 64 360-424 68-131 (152)
247 4fhn_B Nucleoporin NUP120; pro 88.2 4.9 0.00017 42.4 12.9 129 174-305 901-1048(1139)
248 1y8m_A FIS1; mitochondria, unk 87.4 7.4 0.00025 29.0 13.2 82 340-423 34-118 (144)
249 3o48_A Mitochondria fission 1 84.9 9.7 0.00033 28.0 12.1 83 340-424 35-120 (134)
250 1zbp_A Hypothetical protein VP 83.0 15 0.0005 30.9 10.6 120 73-202 5-129 (273)
251 3lvg_A Clathrin heavy chain 1; 79.9 0.11 3.8E-06 47.7 -3.2 216 63-298 81-324 (624)
252 1wdy_A 2-5A-dependent ribonucl 77.3 10 0.00035 32.0 8.6 22 256-277 192-213 (285)
253 3ffl_A Anaphase-promoting comp 75.6 22 0.00074 27.3 8.7 131 59-202 12-151 (167)
254 3esl_A Checkpoint serine/threo 74.4 21 0.00072 28.5 8.6 57 359-415 93-150 (202)
255 3eiq_C Programmed cell death p 74.4 46 0.0016 29.5 14.7 60 105-166 56-117 (358)
256 1zbp_A Hypothetical protein VP 74.0 34 0.0012 28.7 10.2 32 342-373 28-59 (273)
257 1k1a_A B-cell lymphoma 3-encod 73.8 25 0.00085 28.6 9.9 51 112-162 15-67 (241)
258 3kea_A K1L; tropism, ANK repea 73.5 32 0.0011 29.2 10.7 143 112-268 37-183 (285)
259 2uwj_G Type III export protein 73.2 20 0.00068 24.7 8.8 78 116-203 19-98 (115)
260 4b4t_R RPN7, 26S proteasome re 72.7 55 0.0019 29.9 12.6 97 174-271 133-236 (429)
261 2p58_C Putative type III secre 72.4 21 0.00072 24.6 9.4 78 116-203 20-99 (116)
262 2zu6_B Programmed cell death p 71.3 50 0.0017 28.5 14.2 26 105-130 5-30 (307)
263 4g8k_A 2-5A-dependent ribonucl 71.2 44 0.0015 29.1 11.4 53 70-126 27-79 (337)
264 4b4t_R RPN7, 26S proteasome re 70.6 43 0.0015 30.7 11.3 98 210-307 133-237 (429)
265 3esl_A Checkpoint serine/threo 69.7 41 0.0014 26.8 10.0 59 78-138 92-150 (202)
266 4a1g_A Mitotic checkpoint seri 68.0 15 0.00051 27.8 6.2 55 362-416 82-137 (152)
267 4b4t_P 26S proteasome regulato 66.5 80 0.0027 29.0 21.7 191 79-271 30-246 (445)
268 3o48_A Mitochondria fission 1 66.3 36 0.0012 25.0 10.1 20 252-271 87-106 (134)
269 2keb_A DNA polymerase subunit 66.3 17 0.00058 24.8 5.5 60 13-72 26-89 (101)
270 2wvi_A Mitotic checkpoint seri 66.0 18 0.0006 27.8 6.4 57 362-418 77-134 (164)
271 2uwj_G Type III export protein 66.0 30 0.001 23.9 7.2 85 43-142 20-106 (115)
272 2wpv_A GET4, UPF0363 protein Y 64.9 69 0.0024 27.7 19.7 110 68-196 36-157 (312)
273 1k1a_A B-cell lymphoma 3-encod 64.9 29 0.00099 28.2 8.4 87 72-163 13-101 (241)
274 3lpz_A GET4 (YOR164C homolog); 64.9 72 0.0025 27.9 19.8 68 67-152 37-108 (336)
275 2p58_C Putative type III secre 64.6 32 0.0011 23.8 8.2 85 43-142 21-107 (116)
276 3e3v_A Regulatory protein RECX 63.8 50 0.0017 25.7 10.9 78 4-99 24-101 (177)
277 1y8m_A FIS1; mitochondria, unk 63.8 43 0.0015 24.9 11.1 22 251-272 85-106 (144)
278 2ion_A PDCD4, programmed cell 60.3 53 0.0018 24.8 8.2 22 248-269 14-35 (152)
279 3d5l_A Regulatory protein RECX 59.5 70 0.0024 26.0 11.0 78 4-99 67-144 (221)
280 3ffl_A Anaphase-promoting comp 59.4 58 0.002 25.0 10.2 62 174-236 22-91 (167)
281 1qsa_A Protein (soluble lytic 58.7 1.3E+02 0.0046 29.0 28.1 87 59-154 66-152 (618)
282 3lpz_A GET4 (YOR164C homolog); 58.3 95 0.0032 27.1 18.6 22 387-408 194-215 (336)
283 2r9g_A AAA ATPase, central reg 58.0 69 0.0023 25.4 9.7 39 284-323 17-58 (204)
284 3txn_A 26S proteasome regulato 57.1 1.1E+02 0.0038 27.5 20.8 167 66-234 20-207 (394)
285 2nsz_A Programmed cell death p 56.7 55 0.0019 23.9 9.6 22 248-269 12-33 (129)
286 4a1g_A Mitotic checkpoint seri 56.3 62 0.0021 24.4 13.6 55 82-138 82-136 (152)
287 4aez_C MAD3, mitotic spindle c 55.6 25 0.00085 28.6 5.8 54 362-415 131-185 (223)
288 3hra_A Ankyrin repeat family p 55.4 29 0.001 27.2 6.6 12 77-88 14-25 (201)
289 2wpv_A GET4, UPF0363 protein Y 54.9 1E+02 0.0036 26.6 16.6 66 343-408 132-216 (312)
290 3c1d_A Protein ORAA, regulator 54.6 68 0.0023 24.4 12.4 127 3-152 10-144 (159)
291 3bge_A Predicted ATPase; struc 54.5 71 0.0024 25.3 7.9 34 290-323 19-52 (201)
292 3eu9_A Huntingtin-interacting 53.6 22 0.00076 28.8 5.7 16 287-302 216-231 (240)
293 3ctd_A Putative ATPase, AAA fa 53.4 85 0.0029 25.1 9.3 43 283-325 37-82 (213)
294 4ady_A RPN2, 26S proteasome re 53.0 2E+02 0.007 29.4 24.0 330 28-373 304-657 (963)
295 1wdy_A 2-5A-dependent ribonucl 52.5 70 0.0024 26.5 9.0 22 290-311 191-212 (285)
296 3eiq_C Programmed cell death p 52.3 1.3E+02 0.0043 26.7 11.3 76 347-423 219-296 (358)
297 3utm_A Tankyrase-1; tankyrase, 52.1 58 0.002 28.2 8.6 16 112-127 30-45 (351)
298 3b7b_A Euchromatic histone-lys 51.9 27 0.00092 28.4 6.0 212 72-306 15-235 (237)
299 3hra_A Ankyrin repeat family p 49.9 64 0.0022 25.1 7.8 81 113-196 12-92 (201)
300 3dfg_A Xcrecx, regulatory prot 49.7 84 0.0029 24.0 11.8 36 4-41 23-58 (162)
301 2ion_A PDCD4, programmed cell 48.5 85 0.0029 23.7 8.3 23 143-165 14-36 (152)
302 4aez_C MAD3, mitotic spindle c 48.0 41 0.0014 27.3 6.0 43 121-163 132-175 (223)
303 3pvs_A Replication-associated 47.4 1.7E+02 0.0058 26.8 13.8 122 188-325 166-302 (447)
304 2wvi_A Mitotic checkpoint seri 47.3 94 0.0032 23.8 10.2 56 82-139 77-132 (164)
305 3syn_E ATP-binding protein YLX 46.7 1.6 5.5E-05 19.5 -1.3 19 458-476 2-20 (23)
306 3r8s_N 50S ribosomal protein L 46.5 70 0.0024 22.9 6.2 80 382-461 20-106 (120)
307 1ug3_A EIF4GI, eukaryotic prot 46.3 1.3E+02 0.0046 26.3 9.7 13 381-393 273-285 (339)
308 1wgl_A TOLL-interacting protei 46.1 49 0.0017 20.2 5.6 48 16-64 10-57 (59)
309 4b4t_S RPN3, 26S proteasome re 45.8 1.4E+02 0.0047 28.0 9.8 189 103-309 231-431 (523)
310 3txn_A 26S proteasome regulato 45.7 1.7E+02 0.0058 26.3 24.6 283 5-308 26-344 (394)
311 2rfa_A Transient receptor pote 45.4 90 0.0031 25.0 8.2 55 249-304 157-220 (232)
312 3jxi_A Vanilloid receptor-rela 45.4 15 0.0005 30.7 3.3 52 112-163 11-71 (260)
313 3kea_A K1L; tropism, ANK repea 44.9 46 0.0016 28.1 6.5 156 110-280 66-225 (285)
314 3ctd_A Putative ATPase, AAA fa 42.4 1.3E+02 0.0045 24.1 10.3 56 185-240 47-107 (213)
315 2nsz_A Programmed cell death p 42.1 97 0.0033 22.5 9.5 23 143-165 12-34 (129)
316 2o03_A Probable zinc uptake re 41.7 38 0.0013 24.7 4.7 40 3-42 15-56 (131)
317 3eu9_A Huntingtin-interacting 41.5 38 0.0013 27.4 5.3 13 114-126 17-29 (240)
318 1bpo_A Protein (clathrin); cla 41.2 1.7E+02 0.0058 27.0 9.3 112 43-163 343-454 (494)
319 3eyy_A Putative iron uptake re 41.0 1E+02 0.0035 22.9 7.1 33 361-393 33-65 (145)
320 3kae_A CDC27, possible protein 40.7 1.3E+02 0.0043 23.4 7.5 53 354-406 71-140 (242)
321 1bd8_A P19INK4D CDK4/6 inhibit 39.4 49 0.0017 24.5 5.3 13 77-89 11-23 (156)
322 2d2s_A Exocyst complex compone 38.5 1.6E+02 0.0056 24.1 9.1 88 215-305 25-118 (235)
323 2fe3_A Peroxide operon regulat 38.5 1.2E+02 0.0041 22.5 8.5 39 392-430 33-71 (145)
324 3mwm_A ZUR, putative metal upt 38.1 41 0.0014 24.9 4.4 40 3-42 18-59 (139)
325 4e2i_2 DNA polymerase alpha su 37.2 36 0.0012 22.1 3.2 57 13-69 3-63 (78)
326 2fe3_A Peroxide operon regulat 37.0 1.3E+02 0.0043 22.3 7.0 60 90-153 12-71 (145)
327 4ets_A Ferric uptake regulatio 36.9 70 0.0024 24.4 5.6 42 52-94 20-61 (162)
328 2zu6_B Programmed cell death p 36.4 2.1E+02 0.0071 24.7 11.1 71 348-419 169-241 (307)
329 2w57_A Ferric uptake regulatio 36.2 1.3E+02 0.0046 22.4 7.8 60 335-395 7-67 (150)
330 4g8k_A 2-5A-dependent ribonucl 36.1 1.1E+02 0.0038 26.4 7.7 13 149-161 176-188 (337)
331 2zjr_K 50S ribosomal protein L 35.9 80 0.0027 22.5 5.2 80 382-461 20-106 (116)
332 4ets_A Ferric uptake regulatio 35.8 1.4E+02 0.0049 22.6 7.3 61 334-395 22-84 (162)
333 1bpo_A Protein (clathrin); cla 35.8 2E+02 0.0069 26.5 8.9 110 117-231 343-452 (494)
334 2xig_A Ferric uptake regulatio 35.5 1.4E+02 0.0047 22.3 7.7 40 354-393 35-74 (150)
335 1mzb_A Ferric uptake regulatio 35.4 1.3E+02 0.0044 22.0 7.7 22 360-381 33-54 (136)
336 3ltm_A Alpha-REP4; protein eng 34.5 1.7E+02 0.0057 23.0 18.6 19 136-154 93-111 (211)
337 1mzb_A Ferric uptake regulatio 34.5 1.3E+02 0.0046 21.9 6.8 22 259-280 34-55 (136)
338 3eyy_A Putative iron uptake re 33.9 1.3E+02 0.0046 22.2 6.7 37 57-95 11-47 (145)
339 1bd8_A P19INK4D CDK4/6 inhibit 33.0 80 0.0027 23.2 5.5 19 110-128 6-24 (156)
340 2ijq_A Hypothetical protein; s 31.1 1.8E+02 0.006 22.2 7.8 60 246-306 36-103 (161)
341 2f8y_A Notch homolog 1, transl 30.9 32 0.0011 27.5 3.1 17 147-163 64-80 (223)
342 1gd8_A 50S ribosomal protein L 30.6 94 0.0032 22.2 4.8 80 382-461 20-107 (118)
343 2w57_A Ferric uptake regulatio 30.2 1.4E+02 0.0047 22.3 6.3 32 259-290 33-64 (150)
344 2fu4_A Ferric uptake regulatio 30.0 1.1E+02 0.0038 19.7 7.6 33 361-393 33-65 (83)
345 3t8k_A Uncharacterized protein 30.0 1.9E+02 0.0065 22.3 8.6 58 185-242 47-108 (186)
346 2xig_A Ferric uptake regulatio 29.6 1.8E+02 0.006 21.7 6.9 22 217-238 35-56 (150)
347 2b7e_A PRE-mRNA processing pro 29.2 69 0.0024 19.5 3.4 29 260-288 3-31 (59)
348 3aji_A 26S proteasome non-ATPa 29.0 2.1E+02 0.0073 22.6 8.8 19 110-128 10-28 (231)
349 1ug3_A EIF4GI, eukaryotic prot 28.7 99 0.0034 27.1 6.0 62 211-273 14-76 (339)
350 2qx5_A Nucleoporin NIC96; mRNA 28.6 4.2E+02 0.014 25.8 14.0 80 214-304 300-382 (661)
351 1b4a_A Arginine repressor; hel 28.4 1.1E+02 0.0037 23.0 5.2 39 3-41 9-48 (149)
352 2hyv_A Annexin A2; calcium-bin 28.3 2.9E+02 0.0098 23.8 14.4 129 14-153 7-148 (308)
353 1hm6_A Annexin 1; phospholipid 27.9 3.1E+02 0.011 24.1 14.4 26 14-41 47-72 (346)
354 2d2s_A Exocyst complex compone 27.1 2.6E+02 0.0088 22.9 9.6 30 241-270 89-118 (235)
355 2keb_A DNA polymerase subunit 26.9 1.5E+02 0.0053 20.2 6.7 58 363-422 27-89 (101)
356 3bu8_A Telomeric repeat-bindin 26.6 2.5E+02 0.0086 22.6 7.3 22 250-271 121-142 (235)
357 3ltj_A Alpharep-4; protein eng 25.3 2.4E+02 0.0081 21.8 19.1 78 103-188 59-136 (201)
358 3t8k_A Uncharacterized protein 23.8 2.5E+02 0.0086 21.6 8.1 21 115-135 47-67 (186)
359 3ljn_A Hypothetical protein; a 23.8 3E+02 0.01 23.8 8.5 13 114-126 28-40 (364)
360 3twr_A Tankyrase-2; ankyrin re 23.6 1.5E+02 0.0053 21.9 5.7 12 150-161 17-28 (165)
361 2ijq_A Hypothetical protein; s 23.4 2.5E+02 0.0085 21.4 8.5 64 66-131 34-103 (161)
362 2crb_A Nuclear receptor bindin 23.2 1.8E+02 0.0061 19.7 4.8 25 382-406 17-41 (97)
363 2o03_A Probable zinc uptake re 22.4 1.9E+02 0.0063 20.9 5.6 43 352-394 17-59 (131)
364 3mwm_A ZUR, putative metal upt 22.3 1.7E+02 0.0059 21.4 5.4 45 350-394 18-62 (139)
365 2r9g_A AAA ATPase, central reg 22.1 3E+02 0.01 21.9 11.5 55 185-240 26-85 (204)
366 3bge_A Predicted ATPase; struc 22.1 3E+02 0.01 21.8 9.9 54 185-238 19-77 (201)
367 2rfa_A Transient receptor pote 21.6 3E+02 0.01 21.7 9.3 55 252-310 127-183 (232)
368 3b5o_A CADD-like protein of un 21.6 3.4E+02 0.012 22.3 9.6 63 97-162 115-177 (244)
369 2p5k_A Arginine repressor; DNA 21.4 1.4E+02 0.0048 17.8 4.9 37 4-40 10-47 (64)
370 3ljn_A Hypothetical protein; a 21.3 92 0.0031 27.3 4.5 99 170-278 16-116 (364)
371 2pnn_A Transient receptor pote 21.3 77 0.0026 26.4 3.8 16 287-302 239-254 (273)
372 3jxi_A Vanilloid receptor-rela 21.1 38 0.0013 28.0 1.7 28 72-99 9-36 (260)
373 3cz6_A DNA-binding protein RAP 20.8 2.8E+02 0.0096 21.0 7.5 84 3-88 49-137 (168)
374 2es9_A Putative cytoplasmic pr 20.8 1.2E+02 0.0042 20.2 3.6 17 83-99 37-53 (115)
375 1n11_A Ankyrin; clathrin, BAND 20.7 1.9E+02 0.0066 26.0 6.7 305 69-415 48-372 (437)
376 3bu8_A Telomeric repeat-bindin 20.6 3.4E+02 0.012 21.9 10.6 48 119-166 88-142 (235)
377 1dm5_A Annexin XII E105K mutan 20.5 4.1E+02 0.014 22.8 16.4 79 14-95 17-101 (315)
378 3ygs_P Procaspase 9; apoptosis 20.4 1.6E+02 0.0056 19.9 4.5 12 82-93 54-65 (97)
379 3bbo_P Ribosomal protein L17; 20.3 88 0.003 24.6 3.3 80 382-461 109-195 (205)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-34 Score=282.30 Aligned_cols=428 Identities=9% Similarity=-0.026 Sum_probs=296.0
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEM 91 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (481)
.|..++..+.. ..|+..++..+...+ .++.+.|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++
T Consensus 102 ~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 102 CAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred HHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 55566666653 344556666665555 36677788877766422 467778888888888888888888888743
Q ss_pred hcC---------------CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH------------
Q 042941 92 RGG---------------ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL------------ 144 (481)
Q Consensus 92 ~~~---------------~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------ 144 (481)
... +.. .+..+|+.++.+|.+.|++++|+..|+++.+.+.. +...+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~ 252 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIK---LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEW 252 (597)
T ss_dssp CTTC----------CCCSSCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHH
T ss_pred CCccccccccccccccccccc---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHH
Confidence 221 111 12677888888888888888888888887765421 23332222
Q ss_pred --------------------------HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 145 --------------------------LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWME 198 (481)
Q Consensus 145 --------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 198 (481)
+..|.+.|++++|.++|+++... +++..+++.++..+. +.|++++|..+|++
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLF-VRSRFIDVLAITTK 330 (597)
T ss_dssp HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 44555677777888888776554 567778888888888 78888888888888
Q ss_pred HHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 042941 199 MSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 199 ~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (481)
+.+.+.. +..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.... +.
T Consensus 331 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 407 (597)
T 2xpi_A 331 ILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FG 407 (597)
T ss_dssp HHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CH
Confidence 7766533 56677778888888888888888888877653 556777788888888888888888888887765432 56
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKF 355 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (481)
.+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..+..+|.+.+ ++.+.++.+.+.. +.+..+|+.++..|
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 6788888888888888888888888776542 35667777777766554 4466666666553 44677788888888
Q ss_pred HhcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhh
Q 042941 356 SRWRQFGNVFKVWNEISEN----GNGPD--RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQ 429 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 429 (481)
.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..++..+...+...|
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 8888888888888877664 55666 6778888888888888888888888877654 335666776666665554
Q ss_pred HHH---HHHHHHhhcCccCCCCcccccccccc
Q 042941 430 FVE---RQIASLKAHQPQSGQNTRVISKKSDQ 458 (481)
Q Consensus 430 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~ 458 (481)
..+ +.++.+.+..|+++..+..++++|..
T Consensus 565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 444 44455666677777777777766653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=286.52 Aligned_cols=430 Identities=10% Similarity=-0.028 Sum_probs=357.3
Q ss_pred CCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 29 VSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 29 ~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
++...+..++..+ .+++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... .++ ..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~ 153 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS---SACR 153 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC---HHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc---hhHH
Confidence 4666777777776 4788999999999863 3478889999999999999999999999988643 345 8899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc---------------CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCc
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRF---------------KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFN 171 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 171 (481)
+.++..|.+.|++++|+.+|+++... +.+++..+|+.++.+|.+.|++++|.++|+++....+.+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999853321 223457889999999999999999999998865443334
Q ss_pred hHhHHHH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH
Q 042941 172 TKSFNII--------------------------------------LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC 213 (481)
Q Consensus 172 ~~~~~~l--------------------------------------~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 213 (481)
...+..+ +..|. +.|++++|.++|+++.+. +++..+++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS-HEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT-THHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc-CcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 4433332 45566 788999999999988776 578999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.+... .+..+|+.++..|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876 45788999999999999999999999999987643 478899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
+++|.++|+++.+.. +.+..++..++..+.+.+ ++.++++.+.+.+ +.+..++..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998754 236778999999887765 4577777777654 55788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHhhhhHHHHHHH---HHhhc
Q 042941 371 ISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK----QLLPE--PKTDELLQDWSYNKQFVERQIA---SLKAH 441 (481)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~ 441 (481)
+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..+...+...|..+++.+ .+.+.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 988643 47899999999999999999999999999876 67888 6788888888877777665554 55667
Q ss_pred CccCCCCccccccccccchhhccCccccchhcc
Q 042941 442 QPQSGQNTRVISKKSDQDREFLQQPETRRVVRH 474 (481)
Q Consensus 442 ~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~ 474 (481)
.|+++..+..++.+|...|++++|.+..+.+-+
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 788889999999999999999999887665543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.7e-32 Score=257.21 Aligned_cols=219 Identities=12% Similarity=0.109 Sum_probs=185.8
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLM 161 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 161 (481)
..+..+.+.+.++++.+.+ ...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+....+
T Consensus 7 s~~e~L~~~~~~k~~~~sp--e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSP--EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---- 80 (501)
T ss_dssp -----------------CH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----
T ss_pred chHHHHHHHHHHhcccCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----
Confidence 3466677778777776652 3468889999999999999999999999999999999999999999887754321
Q ss_pred hhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 042941 162 FCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC 241 (481)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 241 (481)
. +.+.++.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 81 ---------------------~-~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P 138 (501)
T 4g26_A 81 ---------------------S-PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138 (501)
T ss_dssp ---------------------S-CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------h-hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 2 456678999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042941 242 DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLD 321 (481)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 321 (481)
|..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++.
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhH
Q 042941 322 IIRTGEE 328 (481)
Q Consensus 322 ~~~~~~~ 328 (481)
.++..+.
T Consensus 219 ~F~s~~a 225 (501)
T 4g26_A 219 WFKSEVA 225 (501)
T ss_dssp HHHSHHH
T ss_pred HHhcCcc
Confidence 9887543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-31 Score=254.07 Aligned_cols=207 Identities=16% Similarity=0.239 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhcCCcccH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---------hH
Q 042941 191 EAERVWMEMSQRGICYDV-VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL---------VK 260 (481)
Q Consensus 191 ~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 260 (481)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445555666666655433 45778889999999999999999999998999999999999998887654 67
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcC
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG 340 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 340 (481)
.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------------- 136 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------------- 136 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------------------
Confidence 8899999999999999999999999999999999999999988887764
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042941 341 CQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420 (481)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 420 (481)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.
T Consensus 137 -~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 137 -QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred -CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 5667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 042941 421 LQDWSYNKQ 429 (481)
Q Consensus 421 l~~~~~~~~ 429 (481)
+..++...+
T Consensus 216 l~~~F~s~~ 224 (501)
T 4g26_A 216 IEEWFKSEV 224 (501)
T ss_dssp HHHHHHSHH
T ss_pred HHHHHhcCc
Confidence 999887653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.6e-26 Score=212.01 Aligned_cols=353 Identities=14% Similarity=0.095 Sum_probs=271.8
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|.+.+..+.... +.+...+..+...+...|++++|...++...+. ++.+..+|..+...+...|++++
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCCHHH
Confidence 578899999998886544 245677888888889999999999999988775 34448899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|+..|+++.+.. +.+..+|..+..++...|++++|...|.+.....|.+...+..+...+. ..|++++|...|+++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHH
Confidence 999999998754 3356678899999999999999999998865555556667777888888 89999999999999887
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.... +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+..+. +..++
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 240 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHH
Confidence 6433 56788889999999999999999999998875 456778888999999999999999999998876543 67888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRW 358 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 358 (481)
..+...|...|++++|...|+++.+.+.. +..++..+...+.+. .++...++.+.+.. +.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 88999999999999999999999886421 344555555554443 33345555554442 45566666777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 359 RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777766542 23455666777777777777777777777665
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=4.9e-24 Score=198.85 Aligned_cols=366 Identities=11% Similarity=0.029 Sum_probs=299.1
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh---hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV---RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDE 90 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (481)
.|...+..+.+. .|+......++..+ .++.+.|..+++...... +.+..+|..+...+.+.|++++|...|++
T Consensus 17 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 17 AAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555433 23333333333332 588899999999887544 36789999999999999999999999999
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC
Q 042941 91 MRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF 170 (481)
Q Consensus 91 ~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 170 (481)
+.+. ++....+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|+++....|.
T Consensus 93 al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 93 ALRL----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHH----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHc----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9876 33347789999999999999999999999999865 224566778889999999999999999987665667
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+..+|+.+...+. ..|++++|...|+++...+.. +...+..+...+...|++++|...+++..... +.+..++..+.
T Consensus 168 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 168 FAVAWSNLGCVFN-AQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp CHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 7889999999999 999999999999999887543 56788899999999999999999999998874 44688999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHH-
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEV- 329 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~- 329 (481)
.++...|++++|...|+++.+.++. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...++.
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999987543 67789999999999999999999999998864 35778888888888776555
Q ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 330 --FGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 330 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
...++.+.+.. +.+..++..+...+.+.|++++|...++++.+... .+...|..+...+...|+
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHccC
Confidence 55555555542 45678999999999999999999999999988532 356678888777776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.7e-22 Score=192.27 Aligned_cols=314 Identities=11% Similarity=0.058 Sum_probs=249.8
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+...+..+...+.+.|++++|..+|+.+.+. ++.+..++..+...+...|++++|+..|+.+.+.+ +.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 46788999999999999999999999998875 33348889999999999999999999999998865 34677888
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCch---HhHHHHHH------------HHHHhcCCHHHHHHHHHHHHhcCCccc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNT---KSFNIILN------------GWCNIIGSSREAERVWMEMSQRGICYD 207 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~------------~~~~~~~~~~~a~~~~~~~~~~g~~~~ 207 (481)
.+..+|...|++++|...|+++....+.+. ..+..+.. .+. ..|++++|...|+.+...... +
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIAFLDKILEVCVW-D 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-C
Confidence 899999999999999999998766555555 66665543 377 788999999999888776433 6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH---
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL--- 284 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 284 (481)
..++..+..+|.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 6778888888889999999999998888764 557788888888899999999999999888876432 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 285 ---------IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKF 355 (481)
Q Consensus 285 ---------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (481)
...+...|++++|...|+++.+.. |+...+ ....+..+...+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~---------------------------~~~~~~~l~~~~ 305 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEY---------------------------TVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHH---------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHH---------------------------HHHHHHHHHHHH
Confidence 677888888888888888877642 221100 024677888999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 356 SRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 356 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...|+++.+ +.|+...
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 99999999999999988753 23688999999999999999999999999987 4565543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.9e-21 Score=181.69 Aligned_cols=360 Identities=11% Similarity=0.015 Sum_probs=275.6
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHh
Q 042941 83 TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (481)
.+...+.++... ++.+...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...|+
T Consensus 10 ~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLYFQ----SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccc----cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444443 55568899999999999999999999999998764 4478899999999999999999999999
Q ss_pred hccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccH---HhHHHH------------HHHHHhcCCHHHH
Q 042941 163 CNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDV---VSFSCI------------ISCYSKARNLHKV 227 (481)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------l~~~~~~~~~~~a 227 (481)
++....|.+...+..+...+. ..|++++|...|+.+...... +. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 876656677889999999999 999999999999999886432 33 455444 4458899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 228 LRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...|+.+.+.. +.+..++..+..+|.+.|++++|..+|+++.+... .+..+|..+...|...|++++|...|+++.+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 56788999999999999999999999999987644 37889999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHH
Q 042941 308 GISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD-----RSS 382 (481)
Q Consensus 308 ~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~ 382 (481)
. |+.......+.... ....+..+...|...|++++|...|+++.+.. |+ ...
T Consensus 241 ~--p~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~ 297 (450)
T 2y4t_A 241 D--QDHKRCFAHYKQVK-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS 297 (450)
T ss_dssp C--TTCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred C--CChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence 3 44333222221110 01133446788999999999999999998843 44 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCCCCccccc------
Q 042941 383 YTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSGQNTRVIS------ 453 (481)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~------ 453 (481)
|..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|..+ ..++.+.+..|+++..+..++
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 8889999999999999999999988752 235677777777666655555 555666677888888888888
Q ss_pred ------cccccch--hhccCccccchhccc
Q 042941 454 ------KKSDQDR--EFLQQPETRRVVRHQ 475 (481)
Q Consensus 454 ------~~~~~~~--~~~~a~~~r~~~~~~ 475 (481)
.+|...| ++....++++.+++.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 7777777 444556666666553
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-20 Score=181.80 Aligned_cols=396 Identities=9% Similarity=-0.015 Sum_probs=230.8
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++++.|+..|+.+.... |+..+|..+..++.+.|++++|...|+.+.+. ++.+..++..+..++...|++++
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHhhHHH
Confidence 588999999999997554 68999999999999999999999999999886 33457899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHH--------------------------------------Hhh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHL--------------------------------------MFC 163 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~--------------------------------------~~~ 163 (481)
|...|+.+.+.+. ++......++..+........+.+. +..
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999987653 2333333333222221111111000 000
Q ss_pred ccCC-------CCCchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CC------cccHHhHHHHHHHHHh
Q 042941 164 NKDV-------FPFNTKSFNIILNGWCNI---IGSSREAERVWMEMSQ-----R--GI------CYDVVSFSCIISCYSK 220 (481)
Q Consensus 164 ~~~~-------~~~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~-----~--g~------~~~~~~~~~ll~~~~~ 220 (481)
.... .+.+...+......+. . .|++++|...|+++.. . .. +.+..++..+...+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNL-YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHH-SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 0000 0112333333333333 3 5666666666666655 2 10 1234455566666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 221 ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 221 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
.|++++|...++.+.+.+ |+...+..+..++...|++++|...++++.+.... +...+..+...|...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666666666666666653 22556666666666666666666666666655332 455566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG 377 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 377 (481)
+++..+.... +...+..+...+...+ ++...++.+.+.. +.+..++..+...+...|++++|...++++.+....
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 6666654322 3344444555544433 3344444444432 234455666666666667777777666666542111
Q ss_pred -CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHH---HHHHHHhhcCccCC
Q 042941 378 -PD----RSSYTALIHALFL---NGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVE---RQIASLKAHQPQSG 446 (481)
Q Consensus 378 -~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 446 (481)
++ ...|..+...+.. .|++++|...++++.... +.+..++..+...+...|..+ ..++...+..|.++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 11 2356666666666 677777777766666532 123334444444444443333 33344445555554
Q ss_pred CCcccc
Q 042941 447 QNTRVI 452 (481)
Q Consensus 447 ~~~~~l 452 (481)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4e-20 Score=179.00 Aligned_cols=397 Identities=11% Similarity=-0.064 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+......+.+.|++++|...|+++.+.. |+ ..++..+..++...|++++|+..++.+.+.+ +.+..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 4567788889999999999999999999874 56 8899999999999999999999999999865 3467889999
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR---------------------- 202 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---------------------- 202 (481)
..++...|++++|...|+.+....+++......++..+. .......+.+.+..+...
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL-NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHH-HHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999999876555556555555555544 333333332222111100
Q ss_pred -------------CC---------cccHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHH
Q 042941 203 -------------GI---------CYDVVSFSCIISCYSK---ARNLHKVLRLFDQMKR-----MGI--------ECDRK 244 (481)
Q Consensus 203 -------------g~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~ 244 (481)
.. +.+...+......+.. .|++++|...|+.+.+ ..- +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 00 1113344444444444 8999999999999988 311 22456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 245 VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
++..+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++.+.+.... +...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHH
Confidence 7888999999999999999999999987544 888899999999999999999999999886532 4556666666665
Q ss_pred ch---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042941 325 TG---EEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQ 401 (481)
Q Consensus 325 ~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (481)
.. +++...++...+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHH
Confidence 54 56677777777654 34567888999999999999999999999987532 356788999999999999999999
Q ss_pred HHHHHHHCCCC-CC----HhHHHHHHHHHhh---hhHHHHHH---HHHhhcCccCCCCccccccccccchhhccCccccc
Q 042941 402 YYMEMKEKQLL-PE----PKTDELLQDWSYN---KQFVERQI---ASLKAHQPQSGQNTRVISKKSDQDREFLQQPETRR 470 (481)
Q Consensus 402 ~~~~m~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~ 470 (481)
.++++.+.... ++ ...+..+...+.. .|..+++. +...+..|+++..+..++.+|...|++++|.+..+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998774211 22 2266666666666 66666554 55566778888888999999999999999987665
Q ss_pred hhc
Q 042941 471 VVR 473 (481)
Q Consensus 471 ~~~ 473 (481)
..-
T Consensus 474 ~a~ 476 (514)
T 2gw1_A 474 ESA 476 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=9.2e-19 Score=161.00 Aligned_cols=313 Identities=10% Similarity=0.036 Sum_probs=240.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
++..+..+...+...|++++|...|+.+.+. ++.+..++..+...+...|++++|+..++.+.+.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence 4567778888888889999999999888775 33347788888888888899999999998888754 235677888
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCC---CchHhHHHH------------HHHHHHhcCCHHHHHHHHHHHHhcCCcccH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFP---FNTKSFNII------------LNGWCNIIGSSREAERVWMEMSQRGICYDV 208 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 208 (481)
+..++...|++++|...|++.....| .+...+..+ ...+. ..|++++|...++.+.+.... +.
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~ 154 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVW-DA 154 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-ch
Confidence 88888888999999888888666555 455555554 46677 889999999999988876433 66
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHH------
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYN------ 282 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------ 282 (481)
..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+...+.... +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 778888888899999999999999888764 557788888888899999999999999888876433 333332
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 283 ------SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFS 356 (481)
Q Consensus 283 ------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (481)
.+...+...|++++|...+++..+.. |+...+ ....+..+...+.
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~---------------------------~~~~~~~la~~~~ 283 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEY---------------------------TVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHH---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH---------------------------HHHHHHHHHHHHH
Confidence 22556778889999988888877653 221100 0123556778899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
..|++++|...+++..+.. +.+...|..+...+.+.|++++|...|++..+. .|+...
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 341 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQ 341 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChH
Confidence 9999999999999998853 237889999999999999999999999999874 565433
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=7.7e-20 Score=178.10 Aligned_cols=388 Identities=8% Similarity=0.030 Sum_probs=236.9
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|+..|+.+.... +.+..+|..+..++.+.|++++|.+.|+++.+. ++.+..++..+...+...|++++
T Consensus 38 ~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEI----KPDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred hccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHcCCHHH
Confidence 366678888888886655 356788888888888888888888888888775 33347788888888888888888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC-------CCCchH---------------------
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV-------FPFNTK--------------------- 173 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~--------------------- 173 (481)
|+..|+.+ .. .|+.. ...+..+...+....|...++..... ..|+..
T Consensus 112 A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 88888633 22 22221 11222333333445555555543221 011111
Q ss_pred ---------hHHHHHHHHH-------HhcCCHHHHHHHHHHHHhcCCccc------HHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 174 ---------SFNIILNGWC-------NIIGSSREAERVWMEMSQRGICYD------VVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 174 ---------~~~~l~~~~~-------~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
....+...+. ...+++++|..+++.+.+...... ..++..+...+...|++++|...+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122222111 012477888888888877633311 234666667788888999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042941 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISP 311 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 311 (481)
+.+.+. .|+...+..+...+...|++++|...|+++.+.... +..++..+...+...|++++|...+++..+....
T Consensus 267 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~- 342 (537)
T 3fp2_A 267 QESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE- 342 (537)
T ss_dssp HHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Confidence 888886 355778888888888899999999999988876543 6778888888888899999999999888775422
Q ss_pred CHHHHHHHHHHHhchh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHH
Q 042941 312 TIRTYHAFLDIIRTGE---EVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN-----GPDRSSY 383 (481)
Q Consensus 312 ~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~ 383 (481)
+...+..+...+...+ ++...++...+.. +.+...+..+...+...|++++|...++++.+... ......+
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 3344555555554433 3455555555443 33455667777777777777777777777655211 1112223
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHH---HHhhcCccCC
Q 042941 384 TALIHALFLN----------GKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIA---SLKAHQPQSG 446 (481)
Q Consensus 384 ~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~ 446 (481)
......+.+. |++++|...|+++.+.. +.+...+..+...+...|..+++.+ ...+..|..+
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 3444556666 77777777777776642 2234445555555555555554443 3334444433
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.6e-18 Score=168.84 Aligned_cols=385 Identities=10% Similarity=0.010 Sum_probs=272.5
Q ss_pred CChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 042941 13 HKRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDE 90 (481)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (481)
+.|...++...+..+ -++..+..+...+ .++.+.|+..|+.+.... +.+..++..+..++...|++++|...|+.
T Consensus 42 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 42 NEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp C-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477777777765542 2455555444444 589999999999997544 24788999999999999999999999974
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCCHH-------------------------
Q 042941 91 MRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK------FAVGIE------------------------- 139 (481)
Q Consensus 91 ~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------------------------- 139 (481)
+ .. .|+ .....+..+...+....|...++.+.... ..|+..
T Consensus 119 ~-~~--~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 119 L-SL--NGD-----FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp H-C------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred H-hc--CCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 4 33 233 22223444555566677888888775431 112211
Q ss_pred -----hHHHHHHHHHcC--------CChhhHHHHHhhccCCCCCchH-------hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 140 -----DFQGLLSALCRY--------KNVQDAEHLMFCNKDVFPFNTK-------SFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 140 -----~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
....+...+... |++++|..+++.+....|.+.. ++..+...+. ..|++++|...++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF-LKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH-hcccHHHHHHHHHHH
Confidence 122222222222 4788899999887665555543 4556667777 889999999999999
Q ss_pred HhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
... .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.... +..
T Consensus 270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 345 (537)
T 3fp2_A 270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVY 345 (537)
T ss_dssp HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSH
T ss_pred Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 886 4557788888899999999999999999998875 557888999999999999999999999999887544 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchh---HHHHHHHHHHHcC-----CCCCHHHHHHH
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGE---EVFGLLESMRKMG-----CQPTNDTYIML 351 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l 351 (481)
.+..+...|...|++++|...++++.+... .+...+..+...+...+ ++...++...+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 888899999999999999999999887642 24456666666665544 4455555544331 11223334555
Q ss_pred HHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 352 IKKFSRW----------RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 352 ~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
...+... |++++|...+++..+... .+...+..+...|.+.|++++|.+.|++..+. .|+...
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 497 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTMDE 497 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--CHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 6677777 999999999999988643 46788999999999999999999999999875 344433
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=2.8e-17 Score=151.09 Aligned_cols=307 Identities=12% Similarity=0.038 Sum_probs=249.1
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.+.|+..|+.+.... +.+..++..+...+...|++++|...|+.+.+. ++.+..++..+...+...|++++
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHH
Confidence 588999999999997544 246889999999999999999999999999876 33347899999999999999999
Q ss_pred HHHHHHHHhhcCCC--CCHHhHHHH------------HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 122 AINAFYAYKRFKFA--VGIEDFQGL------------LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 122 a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
|...|+.+.+.... .+...+..+ ...+...|++++|...++.+....|.+...+..+...+. ..|
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI-KEG 168 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HCC
Confidence 99999999876420 234444444 578899999999999999976666778889999999999 999
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHc
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN------------AVIHALAK 255 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~ 255 (481)
++++|...++........ +..++..+...+...|++++|...++...+.. +.+...+. .+...+.+
T Consensus 169 ~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (359)
T 3ieg_A 169 EPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIR 246 (359)
T ss_dssp CHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887433 67889999999999999999999999998864 33444333 23667899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNV----VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFG 331 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 331 (481)
.|++++|...++++.+.... +. ..+..+...+...|++++|...+++..+..
T Consensus 247 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------- 302 (359)
T 3ieg_A 247 DGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME----------------------- 302 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred cCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------
Confidence 99999999999999886543 23 234457788999999999999999987752
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL 392 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (481)
+.+..++..+...+...|++++|...+++..+... .+...+..+..+...
T Consensus 303 ----------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 303 ----------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 33567888899999999999999999999998642 245566666655443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.3e-18 Score=155.41 Aligned_cols=286 Identities=13% Similarity=0.001 Sum_probs=173.5
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+...+..+...+...|++++|.++|+++.+. ++.+...+..++..+...|++++|...++++.+.. +.+...+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 45566667777777777777777777777665 22234556666667777777777777777777643 23455666
Q ss_pred HHHHHHHcCC-ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 143 GLLSALCRYK-NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 143 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
.+...+...| ++++|...|++.....+.+...+..+...+. ..|++++|...++...+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 6667777777 6777777776655545555666666666666 677777777777766655332 234455566666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCC
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG--------VAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 293 (481)
|++++|...++...+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 77777777776666653 3455666666666666666666666666665431 02233455556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 294 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
+++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus 252 ~~~A~~~~~~a~~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 252 YAEALDYHRQALVLI---------------------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHHS---------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhC---------------------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 666666666555431 11233455555555666666666666665554
Q ss_pred CCCCCCHHHHHHHHHHH
Q 042941 374 NGNGPDRSSYTALIHAL 390 (481)
Q Consensus 374 ~~~~~~~~~~~~l~~~~ 390 (481)
... .+...+..+..++
T Consensus 299 ~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 299 LRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp TCS-CCHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHH
Confidence 321 2444555555544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.5e-17 Score=151.09 Aligned_cols=291 Identities=9% Similarity=0.011 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+.+|+.+.+.. +.+...+..++.++...|++++|..+++++....|.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 5577788888899999999999999998765 345667777888999999999999999987666667888899999999
Q ss_pred HHhcC-CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 183 CNIIG-SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 183 ~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
. ..| ++++|...|+........ +...|..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++
T Consensus 101 ~-~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 101 L-MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp H-HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred H-HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 9 889 999999999999877433 56678889999999999999999999998875 4456777889999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGC 341 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 341 (481)
|...++++.+.... +...+..+...+...|++++|...+++..+...... .....
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------~~~~~ 232 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG------------------------NEVTV 232 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS------------------------CSCTT
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc------------------------ccccc
Confidence 99999999887543 678889999999999999999999998766311000 00011
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPE-PKTDEL 420 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 420 (481)
+....++..+...+...|++++|...+++..+... .+...|..+...+.+.|++++|.+.|++..+. .|+ ...+..
T Consensus 233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 309 (330)
T 3hym_B 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTM 309 (330)
T ss_dssp TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHH
Confidence 33456888999999999999999999999988643 36778999999999999999999999998764 454 444444
Q ss_pred HHHHH
Q 042941 421 LQDWS 425 (481)
Q Consensus 421 l~~~~ 425 (481)
+...+
T Consensus 310 l~~~~ 314 (330)
T 3hym_B 310 LGHCI 314 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=8.8e-18 Score=155.19 Aligned_cols=298 Identities=12% Similarity=-0.019 Sum_probs=227.0
Q ss_pred cCHHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH
Q 042941 43 NDWEAAFT-FFLWAGKQSGYAH--STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119 (481)
Q Consensus 43 ~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~ 119 (481)
++.+.|+. .++.......-.| +...+..+...+.+.|++++|...|+.+.+. ++.+..++..+...+...|++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCcCH
Confidence 56677887 7776653322222 4567888999999999999999999999886 334488999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH---------------HHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI---------------ILNGWCN 184 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 184 (481)
++|+..|+++.+.+ +.+..++..+..++...|++++|...+++.....+.+...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 99999999998865 3477889999999999999999999998865444444444332 245556
Q ss_pred hcCCHHHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
..|++++|...++.+....... +..++..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999988764332 47788889999999999999999999998874 556788999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCC
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQP 343 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 343 (481)
..|+++.+..+ .+...+..+...|...|++++|...|++..+........ .....+.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------~~~~~~~ 328 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP----------------------RGEGGAM 328 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----------------------------CCCC
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc----------------------cccccch
Confidence 99999988744 367788899999999999999999999876642110000 0000123
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 344 TNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 344 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
...+|..+..+|...|++++|..++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 467888899999999999999888763
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=4.6e-18 Score=157.05 Aligned_cols=290 Identities=13% Similarity=0.023 Sum_probs=217.9
Q ss_pred hccCChhHHHH-HHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 76 GKVRKFDTAWA-LIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 76 ~~~g~~~~a~~-~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
...|++++|.+ .|++.... .|+.. +...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQF--EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCC--CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhc--CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 34578888888 88866554 22211 24567788889999999999999999999865 346778889999999999
Q ss_pred ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHH-H--------------HHHH
Q 042941 153 NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFS-C--------------IISC 217 (481)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~--------------ll~~ 217 (481)
++++|...|++.....|.+..++..+...+. ..|++++|...++.+........ ..+. . .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYA-HLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTG-GGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999998866556678888999999999 89999999999999887643321 2221 1 2333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLD 295 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 295 (481)
+...|++++|...++.+.+.. +. +..++..+...+...|++++|...|+++.+.... +..++..+...+...|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHH
Confidence 448888999999999888864 22 5788888889999999999999999988876433 6778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 042941 296 EARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG 375 (481)
Q Consensus 296 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 375 (481)
+|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+..
T Consensus 269 ~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 269 EAVAAYRRALELQ---------------------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998877642 2345677888889999999999999999887632
Q ss_pred CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 376 NGP----------DRSSYTALIHALFLNGKLEEAHQYYME 405 (481)
Q Consensus 376 ~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (481)
... ...+|..+..+|...|++++|..++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 211 267889999999999999999888764
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2e-17 Score=152.65 Aligned_cols=278 Identities=10% Similarity=-0.039 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
+...+..+...+.+.|++++|...|+.+.+. ++.+..++..+...+...|++++|+..|+++.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 4566889999999999999999999999886 33448899999999999999999999999999865 346788999
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchH----------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-ccHHhHH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTK----------SFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YDVVSFS 212 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~ 212 (481)
+..+|...|++++|...|++.....|.+.. .+..+...+. ..|++++|...++++...... ++..++.
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV-DSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999885443222222 2334577788 899999999999999887433 2578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+...+...|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+..+. +..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 99999999999999999999999874 557889999999999999999999999999887543 6788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNE 370 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 370 (481)
++++|...|++..+... +...-.. ......+..++..+..++...|+.+.+..+..+
T Consensus 296 ~~~~A~~~~~~al~~~~--~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQR--KSRNQQQ-------------------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHH--CC-------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCc--ccCCCcc-------------------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876421 1000000 000011345677777778888888777776554
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2.9e-17 Score=151.51 Aligned_cols=266 Identities=13% Similarity=-0.012 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|+..|++.....|.+..++..+...+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4457788888999999999999999998765 346788888999999999999999999886655566788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcc---------cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICY---------DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAVIH 251 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 251 (481)
. ..|++++|...|+++.+..... ....+..+...+...|++++|...++++.+.. +. +..++..+..
T Consensus 144 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 T-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred H-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 8 8999999999999887753220 01222334677888888888888888888764 22 5778888888
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFG 331 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 331 (481)
.|...|++++|...|+++.+..+. +..+|..+..+|...|++++|...|++..+..
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------- 277 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----------------------- 277 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 888888888888888888876443 67788888888888888888888888876642
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCCHHHHH
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNG-----------PDRSSYTALIHALFLNGKLEEAH 400 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~ 400 (481)
+.+..++..+...|...|++++|...++++.+.... .+...|..+..++...|+.+.+.
T Consensus 278 ----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 278 ----------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred ----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 234567777888888888888888888887663211 12567888888888888888887
Q ss_pred HHHHH
Q 042941 401 QYYME 405 (481)
Q Consensus 401 ~~~~~ 405 (481)
.+.++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 76654
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=173.31 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=70.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKR---MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
..||+++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 285 IKPLCKARK-LDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 285 i~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666655 34556666666666666666666655554433
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.1e-16 Score=143.18 Aligned_cols=278 Identities=12% Similarity=0.028 Sum_probs=174.4
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
..+......+...|++++|..+|+++.+. ++.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 34555556666666666666666666554 22235555566666666666666666666665543 22344455555
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHH-HH-HHHhcCC
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCI-IS-CYSKARN 223 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-l~-~~~~~~~ 223 (481)
..+...|++++|...+++.....+.+...+..+.... |+......+ .. .+...|+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD-----------------------VDIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------CCTTSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-----------------------HHHHHHHHHHHhHHHHHccc
Confidence 5555555555555555443322222222222211000 000011111 12 2666778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...+++
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887764 446777888888888888888888888888776433 567788888888888889888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----
Q 042941 304 MLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP----- 378 (481)
Q Consensus 304 m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 378 (481)
+.+.. +.+..++..+...+...|++++|...++++.+.....
T Consensus 232 a~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 232 ALDIN---------------------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHcC---------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 76642 2345567778888888999999999998887643221
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 379 ------DRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 379 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+...|..+..++.+.|++++|..++++.
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4678888999999999999999888754
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.7e-16 Score=143.83 Aligned_cols=277 Identities=11% Similarity=0.026 Sum_probs=207.6
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
.++.++|..+|+.+.... +.+..++..+...+...|++++|...|+++.+. ++.+..++..+...+...|++++
T Consensus 34 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHHHcCCHHH
Confidence 588999999999997665 357889999999999999999999999999886 33348899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG--WCNIIGSSREAERVWMEM 199 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~ 199 (481)
|+..++.+.+.... +...+..+...+ |+......+... +. ..|++++|...++.+
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQAD---------------------VDIDDLNVQSEDFFFA-APNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC-----------------------------------------CCTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHH---------------------HHHHHHHHHHHhHHHH-HcccHHHHHHHHHHH
Confidence 99999999875422 222322221111 111112222122 55 788999999999998
Q ss_pred HhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh
Q 042941 200 SQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV 279 (481)
Q Consensus 200 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (481)
...... +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.... +..
T Consensus 165 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 241 (327)
T 3cv0_A 165 LEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVR 241 (327)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHH
Confidence 876433 67788889999999999999999999998874 556788999999999999999999999999887543 678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 042941 280 TYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR 359 (481)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 359 (481)
++..+...|...|++++|...+++..+.........- ......+..++..+..++...|
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG---------------------EASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--------------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc---------------------cchhhcCHHHHHHHHHHHHhcC
Confidence 8899999999999999999999988764211100000 0000113567888999999999
Q ss_pred ChhHHHHHHHHH
Q 042941 360 QFGNVFKVWNEI 371 (481)
Q Consensus 360 ~~~~a~~~~~~~ 371 (481)
++++|..++++.
T Consensus 301 ~~~~A~~~~~~~ 312 (327)
T 3cv0_A 301 RPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHTTCC
T ss_pred CHHHHHHHHHHH
Confidence 999999988754
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-15 Score=146.20 Aligned_cols=388 Identities=8% Similarity=-0.080 Sum_probs=238.6
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC-----CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGG-----ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK--- 133 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--- 133 (481)
......||.+..++...|++++|++.|++..+. +...++....+|..+...|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999876541 111233346788889999999999999999988776421
Q ss_pred ---CC-CCHHhHHHHHHHHHc--CCChhhHHHHHhhccCCCCCchHhHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCc
Q 042941 134 ---FA-VGIEDFQGLLSALCR--YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC--NIIGSSREAERVWMEMSQRGIC 205 (481)
Q Consensus 134 ---~~-~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~~~g~~ 205 (481)
.. ..+.++.....++.. .+++++|+..|++.....|.+...+..+...+. ...++.++|++.+++..+....
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 124455555444443 456888888888755444455555555444432 1456667788888777665433
Q ss_pred ccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 206 YDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 206 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 44455555444443 456778888888877764 456777888888888888888888888888776443 45555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (481)
..+...|...+....+... ...............+...++...+.. +.+..++..+...|...|++
T Consensus 285 ~~lg~~y~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE-------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhhHHH-------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 5555554322111100000 000000011111233444444444433 33445677889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHH
Q 042941 362 GNVFKVWNEISENGNGPDRS--SYTALIH-ALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASL 438 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (481)
++|...|++..+....|... .+..+.. .+...|++++|+..|++..+ +.|+........ ...+...+..
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~------~~l~~~~~~~ 422 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKMK------DKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH------HHHHHHHHHH
Confidence 99999999998865433221 2333332 34578999999999999887 456654332222 2334556677
Q ss_pred hhcCccCCCCccccccccccchhhccCccccchhcc
Q 042941 439 KAHQPQSGQNTRVISKKSDQDREFLQQPETRRVVRH 474 (481)
Q Consensus 439 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~ 474 (481)
.+.+|.++..+..+|.+|...|++++|.+.-++.-+
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999999999999987655433
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=165.72 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFS 356 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 356 (481)
-..||+++|.+||+.|++++|.++|.+|.+. ...|+.||..|||+||.+|+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m-----------------------------~~kG~~PdvvTYNtLI~Glc 176 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ-----------------------------RQKRKLLTLDMYNAVMLGWA 176 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS-----------------------------HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------------------hhcCCCCCHhHHHHHHHHHH
Confidence 4568999999999999999999999998753 23356789999999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHH
Q 042941 357 RWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK-LEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQI 435 (481)
Q Consensus 357 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 435 (481)
+.|++++|.++|++|.+.|+.||..|||++|.++++.|+ .++|.++|++|.+.|+.||..||+.++....+. ..+
T Consensus 177 k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL 252 (1134)
T 3spa_A 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVL 252 (1134)
T ss_dssp HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHH
Confidence 999999999999999999999999999999999999998 578999999999999999999999887655444 444
Q ss_pred HHHhhcCccC
Q 042941 436 ASLKAHQPQS 445 (481)
Q Consensus 436 ~~~~~~~~~~ 445 (481)
+.+....|+.
T Consensus 253 ~~Vrkv~P~f 262 (1134)
T 3spa_A 253 KAVHKVKPTF 262 (1134)
T ss_dssp HHHGGGCCCC
T ss_pred HHHHHhCccc
Confidence 4444445533
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2.3e-15 Score=133.46 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=185.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH
Q 042941 111 RRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (481)
+.....|++..|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+. ..++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~-~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLA-SHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHH-CSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHc-CCCcHH
Confidence 44455677888887777654432111123445566778888888877776643 24566677777777777 778888
Q ss_pred HHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 191 EAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 191 ~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
+|++.++++...+..| +...+..+...+...|++++|++.++. +.+...+..+...+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888877765444 344555666778888888888888876 456777778888888888888888888888
Q ss_pred HHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH
Q 042941 270 EEKGVAPNVVTY---NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND 346 (481)
Q Consensus 270 ~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (481)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------------------------------p~~~~ 201 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------------------------------SPTLL 201 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---------------------------------CCCHH
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---------------------------------CCcHH
Confidence 7763 343211 112233334577888888888876641 45677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEE-AHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
.++.+..++.+.|++++|...+++..+... .+..++..++..+...|+.++ +.++++++.+ +.|+..... +..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~---d~~ 275 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK---EYR 275 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH---HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH---HHH
Confidence 788888888888999999998888877543 367788888888888888865 5678888776 346554332 334
Q ss_pred hhhhHHHHHHH
Q 042941 426 YNKQFVERQIA 436 (481)
Q Consensus 426 ~~~~~~~~~~~ 436 (481)
.+.+..+++..
T Consensus 276 ~~~~~fd~~~~ 286 (291)
T 3mkr_A 276 AKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=4.4e-17 Score=147.67 Aligned_cols=292 Identities=9% Similarity=0.064 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 042941 30 SSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL 109 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l 109 (481)
+...+..+|..+ ++.++|.++++.+ +++.+|..++.++.+.|++++|++.|.+. +| ..+|..+
T Consensus 5 ~~~a~~~ll~~~-~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D---~~~y~~V 67 (449)
T 1b89_A 5 NTSAVQVLIEHI-GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHc-cCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CC---HHHHHHH
Confidence 344455555544 6689999999877 33459999999999999999999999653 35 7799999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
+.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|. ..|.+
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~-~~g~y 138 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCY-DEKMY 138 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT------CC-----------------CT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHH-HcCCH
Confidence 99999999999999988777663 4567788899999999999999988885 367779999999999 99999
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (481)
++|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+
T Consensus 139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L 203 (449)
T 1b89_A 139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 203 (449)
T ss_dssp TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999976 47999999999999999999999987 27899999999999999999996665543
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch--hHHHHHHHHHHHc-CCCC---
Q 042941 270 EEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG--EEVFGLLESMRKM-GCQP--- 343 (481)
Q Consensus 270 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--~~~~~~~~~~~~~-~~~~--- 343 (481)
. ....-...++..|.+.|++++|..+++...... .-....|+-+--.|++. +...+.++..... +++|
T Consensus 204 ~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 204 V-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred H-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH
Confidence 2 233345578899999999999999999987654 34566677666666554 4444444444322 3333
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHH
Q 042941 344 ---TNDTYIMLIKKFSRWRQFGNVFKVW 368 (481)
Q Consensus 344 ---~~~~~~~l~~~~~~~g~~~~a~~~~ 368 (481)
+...|..++..|...++++.|..+.
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3445778888899999999887643
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=2.3e-13 Score=130.55 Aligned_cols=337 Identities=12% Similarity=0.051 Sum_probs=271.3
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh--
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGK----VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-- 115 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-- 115 (481)
.++.+.|+..|+..... | +..++..+...|.. .+++++|...|+...+.| + +.++..+...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L---PQAQQNLGVMYHEGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCC
Confidence 36789999999998654 3 67788889999988 899999999999998764 4 6777888888888
Q ss_pred --cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc----CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----
Q 042941 116 --VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCR----YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI---- 185 (481)
Q Consensus 116 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 185 (481)
.+++++|+..|++..+.+ ++..+..+...|.. .++.++|...|++.... .+...+..+...|. .
T Consensus 126 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~ 199 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS-RGLGV 199 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh-cCCCC
Confidence 789999999999998865 56777778888877 78999999999885432 36778888888887 6
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CC
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GR 257 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 257 (481)
.+++++|...|+...+.| +...+..+...|.. .+++++|..+|+...+.| +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 799999999999988875 55667777777776 789999999999988765 45667777777877 89
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------h
Q 042941 258 LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA-----RKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT------G 326 (481)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~------~ 326 (481)
++++|...|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+-..|.. .
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998764 556777788888877 89999999999998875 33444444444433 3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 042941 327 EEVFGLLESMRKMGCQPTNDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEE 398 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 398 (481)
..+...++...+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...|.+ .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44566666666653 57788888888888 899999999999998865 57788889999988 899999
Q ss_pred HHHHHHHHHHCCCC
Q 042941 399 AHQYYMEMKEKQLL 412 (481)
Q Consensus 399 A~~~~~~m~~~~~~ 412 (481)
|...|++..+.+..
T Consensus 422 A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 422 AWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999987643
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=3.8e-14 Score=135.98 Aligned_cols=376 Identities=11% Similarity=0.039 Sum_probs=290.2
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh----cCCH
Q 042941 48 AFTFFLWAGKQSGYAHSTREYHTMIAILGK----VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA----VHDV 119 (481)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~----~~~~ 119 (481)
++..+..... . -+..++..+...|.. .+++++|...|+...+.| + +.++..+...|.. .++.
T Consensus 26 ~~~~~~~~a~-~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~---~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 26 NLEQLKQKAE-S---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---Y---TPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp CHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCCCCCH
Confidence 3455555433 2 377888888888887 899999999999998763 4 7788888899988 8999
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHc----CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCR----YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSRE 191 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ 191 (481)
++|...|++..+.| ++..+..|...|.. .+++++|...|++.... .+...+..+...|. . .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF-EGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999998865 66777778888887 78999999999885432 35677778888887 6 789999
Q ss_pred HHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHH
Q 042941 192 AERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDAI 263 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 263 (481)
|...|++..+.| +...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998874 66778888888887 899999999999998875 56778888888876 88999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--------hhHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT--------GEEVFG 331 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--------~~~~~~ 331 (481)
..|++..+.| +...+..+-..|.. .+++++|..+|+...+.| +...+..+-..|.. ..++..
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999998864 55667777777877 899999999999998775 34444444444433 345566
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042941 332 LLESMRKMGCQPTNDTYIMLIKKFSRWR---QFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYM 404 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 404 (481)
.++...+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 777766654 4567777777787766 7899999999998863 67888899999998 899999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhh----h---hHHHHHHHHHhhcC---ccCCCCccccccccccch
Q 042941 405 EMKEKQLLPEPKTDELLQDWSYN----K---QFVERQIASLKAHQ---PQSGQNTRVISKKSDQDR 460 (481)
Q Consensus 405 ~m~~~~~~p~~~~~~~l~~~~~~----~---~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 460 (481)
+..+.| ++..+..+-..+.. . ..+...++...+.. |+++.....++.++....
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~ 454 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQL 454 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHH
Confidence 999875 34555545444433 3 44445555666666 446777777888776543
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.9e-16 Score=143.60 Aligned_cols=320 Identities=8% Similarity=0.034 Sum_probs=151.3
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
+.|++++|.+.++++. + +.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 15 ~~~~ld~A~~fae~~~------~---~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------E---PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------C---hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHH
Confidence 6688999999999993 3 56999999999999999999999965 2577799999999999999999
Q ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 157 AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
|+..++..... .+++.+.+.++.+|. +.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark~-~~~~~i~~~Li~~Y~-Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK-ARESYVETELIFALA-KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh-CccchhHHHHHHHHH-HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99988776554 456788999999999 9999999998885 367789999999999999999999999976
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY 316 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 316 (481)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. ......
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47999999999999999999999988 278999999999999999999966555432 233345
Q ss_pred HHHHHHHhchhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC------CHHHHHHHH
Q 042941 317 HAFLDIIRTGEEVFGLLESMRKM-GC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-NGNGP------DRSSYTALI 387 (481)
Q Consensus 317 ~~li~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~ 387 (481)
..++..|.+.|...+++..+... |. +-...+|+-+.-.|++- ++++..+.++.... .+++| +...|.-+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56778888777665555555443 32 44567788777777764 34444444443332 22333 345688889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCcc
Q 042941 388 HALFLNGKLEEAHQYYMEMKEK-QLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQ 444 (481)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
..|.+.++++.|.. .|.+. ..--+...|--++....+.+..=+++....+..|.
T Consensus 290 ~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 290 FLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 99999999998876 45554 23344555666666666777777888888877775
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=2e-14 Score=127.43 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=198.4
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHS--TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV 119 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~ 119 (481)
.+.+..|+..++.... ..|+ ......+..+|...|+++.|+..++. . ++....++..+...+...++.
T Consensus 12 ~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp TTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c----CChhHHHHHHHHHHHcCCCcH
Confidence 5888899988876532 2244 34556778999999999999986644 1 222378888899999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWME 198 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 198 (481)
++|+..++++...+..| ++..+..+..++...|++++|++.+++ +.+...+..+...+. +.|++++|.+.|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILL-KLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 99999999998776545 456677777999999999999999987 567888999999999 99999999999999
Q ss_pred HHhcCCcccHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 199 MSQRGICYDVVSF---SCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 199 ~~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+..+.
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 98874 443211 223344455689999999999999874 678889999999999999999999999999887554
Q ss_pred CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 042941 276 PNVVTYNSLIKPLCKARKLDE-ARQAFDEMLQRG 308 (481)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~ 308 (481)
+..++..++..+...|+.++ +.++++++.+..
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999876 678998888754
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.8e-13 Score=138.51 Aligned_cols=389 Identities=12% Similarity=0.068 Sum_probs=224.2
Q ss_pred CHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 30 SSELVSEVLSWV--RNDWEAAFTFFLWAGKQSG-YAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 30 ~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
+|.-+......+ .+.+.+|+++++.+..... +.-+....+.++.+-.+. +..+..++.+.+... + .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d------~ 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D------A 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c------H
Confidence 344444444433 3555666666666652222 223344444444444443 333444444333311 1 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
..+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..+..++. ..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql-~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQL-QK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHH-hC
Confidence 124445555666677777766642 11111222222 555666666666654 24566777777777 77
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 7777777777543 256667777777777777777777777666643 33333344777777777776433332
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH
Q 042941 267 KSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND 346 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (481)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.++.....+...+. .+..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~ 1251 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTR 1251 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHH
Confidence 2 235556666777777777777777777764 35667777777666666666665554 3456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP-KTDELLQDWS 425 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~ 425 (481)
+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..... .|.. ..|.-+..++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLy 1324 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHH
Confidence 77777777777777777777655422 35666778888888888888888888776533 2222 2232222222
Q ss_pred --hhhhHHHHHHHHHhhcCc--------cCCCCccccccccccchhhccCccccchhccccccc
Q 042941 426 --YNKQFVERQIASLKAHQP--------QSGQNTRVISKKSDQDREFLQQPETRRVVRHQGFSF 479 (481)
Q Consensus 426 --~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~r~~~~~~~~~~ 479 (481)
.+-+...+.++...+... .....|..+..+|.+.|+|+.|.. -.|++..-.|
T Consensus 1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~--tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII--TMMNHPTDAW 1386 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH--HHHhccHhhh
Confidence 233333344444443332 334456677788888888887765 3455544444
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=7.4e-13 Score=128.36 Aligned_cols=402 Identities=10% Similarity=0.023 Sum_probs=272.4
Q ss_pred CHHHHHHHHHHh-hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWV-RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
+...+..++... .++.+.|..+|+.+.... +.+...|...+..+.+.|++++|..+|++.... .|+ ...|..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~---~~lw~~ 84 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH---IDLWKC 84 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC---HHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---hHHHHH
Confidence 566666666643 478899999999997655 457889999999999999999999999999987 355 677777
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHHhh-cCCCC-CHHhHHHHHHHHHc---------CCChhhHHHHHhhccCCCCCc-
Q 042941 109 LIRRY-CAVHDVGRAIN----AFYAYKR-FKFAV-GIEDFQGLLSALCR---------YKNVQDAEHLMFCNKDVFPFN- 171 (481)
Q Consensus 109 li~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~- 171 (481)
.+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++... .|..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhh
Confidence 76533 34577766655 7777664 34443 56677777776654 6889999999998665 3322
Q ss_pred -hHhHHHHHHHHHHh-------------cCCHHHHHHHHHHHH------hcC---Cccc--------HHhHHHHHHHHHh
Q 042941 172 -TKSFNIILNGWCNI-------------IGSSREAERVWMEMS------QRG---ICYD--------VVSFSCIISCYSK 220 (481)
Q Consensus 172 -~~~~~~l~~~~~~~-------------~~~~~~a~~~~~~~~------~~g---~~~~--------~~~~~~ll~~~~~ 220 (481)
...|........ . .+++..|..++..+. +.. +.|+ ...|...+.....
T Consensus 164 ~~~~~~~~~~~e~-~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 164 IEQLWRDYNKYEE-GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp HHHHHHHHHHHHH-HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 233333332111 1 234566766666532 111 2333 2355555543322
Q ss_pred c----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------CCChH-------HHHHHHHHHHHcCCCCCh
Q 042941 221 A----RNL----HKVLRLFDQMKRMGIECDRKVYNAVIHALAK-------GRLVK-------DAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 221 ~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~ 278 (481)
. ++. ..+..+|++..... +.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1 222 47788898888763 5578888888888875 79987 899999999863223367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhchhH---HHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 279 VTYNSLIKPLCKARKLDEARQAFDEMLQRGISPT--IRTYHAFLDIIRTGEE---VFGLLESMRKMGCQPTNDTYIMLIK 353 (481)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (481)
..|..++..+.+.|++++|..+|+.+.+.. |+ ...|..+...+.+.++ +..+++...+.. +.+...|.....
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 889999999999999999999999999853 43 2467777666655544 466666665542 223333333222
Q ss_pred H-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HhHHHHHHHHH---h
Q 042941 354 K-FSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ-LLPE--PKTDELLQDWS---Y 426 (481)
Q Consensus 354 ~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~---~ 426 (481)
. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+... +
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999988753 2368899999999999999999999999999863 2232 22454444443 3
Q ss_pred hhhHHHHHHHHHhhcCccC
Q 042941 427 NKQFVERQIASLKAHQPQS 445 (481)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~ 445 (481)
+...+....+...+..|++
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 4445556666777777753
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=8.8e-15 Score=123.89 Aligned_cols=210 Identities=12% Similarity=-0.021 Sum_probs=112.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhH
Q 042941 62 AHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDF 141 (481)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 141 (481)
+++...+..+...+.+.|++++|...|+...+. ++.++.++..+...+...|++++|+..|++..+.+ +.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 456677888888888888888888888888776 44457788888888888888888888888887754 2355666
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
..+..++...+.. . .. ... ..|++++|+..|++..+..+. +...+..+..++...
T Consensus 77 ~~lg~~~~~~~~~-----------~---~~---------~~~-~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 77 MVLSEAYVALYRQ-----------A---ED---------RER-GKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHHHHHHT-----------C---SS---------HHH-HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhh-----------h---hh---------hcc-cccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc
Confidence 6677766665000 0 00 001 124455555555544443222 334444444455555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
|++++|...|++..+.. .+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|...|
T Consensus 132 g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 132 GERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-----------
T ss_pred CChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHH
Confidence 55555555555554443 34444555555555555555555555555444322 3444444445555555555555554
Q ss_pred HHH
Q 042941 302 DEM 304 (481)
Q Consensus 302 ~~m 304 (481)
++.
T Consensus 209 ~~~ 211 (217)
T 2pl2_A 209 ALE 211 (217)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=5.4e-12 Score=122.27 Aligned_cols=384 Identities=8% Similarity=-0.006 Sum_probs=264.7
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-hccCChhHHHH----
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAIL-GKVRKFDTAWA---- 86 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~---- 86 (481)
.+..+++.+.+. .+-++......+... .++.+.|..+|+.+.... |+...|...+... ...|+++.|.+
T Consensus 30 ~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 30 KARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 555566665532 233555565555554 478899999999997544 6888888888644 45677777665
Q ss_pred HHHHHhc-CCCCCCcccHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH--------
Q 042941 87 LIDEMRG-GETGPSLVTKQTLLILIRRYCA---------VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSAL-------- 148 (481)
Q Consensus 87 ~~~~~~~-~~~~p~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------- 148 (481)
+|+.... .|..|+ +...|...+..... .|+++.|..+|++..+....+....|.......
T Consensus 106 ~~~~al~~~g~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 106 AYDFALDKIGMEIM--SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHTTTSTT--CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHCCCCcc--cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 7777655 355443 47788888776654 789999999999998731111123343322211
Q ss_pred -----HcCCChhhHHHHHhh-------ccC---CCCCc--------hHhHHHHHHHHHHhc----CCH----HHHHHHHH
Q 042941 149 -----CRYKNVQDAEHLMFC-------NKD---VFPFN--------TKSFNIILNGWCNII----GSS----REAERVWM 197 (481)
Q Consensus 149 -----~~~~~~~~a~~~~~~-------~~~---~~~~~--------~~~~~~l~~~~~~~~----~~~----~~a~~~~~ 197 (481)
...+++..|..++.. +.. ..+|+ ...|...+..-. .. ++. ..+..+|+
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~-~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK-SNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH-HCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH-cCCccCCcchhHHHHHHHHHH
Confidence 133456677766643 221 13443 245555554322 21 222 47778898
Q ss_pred HHHhcCCcccHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 198 EMSQRGICYDVVSFSCIISCYSK-------ARNLH-------KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 198 ~~~~~g~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
+...... -+...|..+...+.+ .|+++ +|..+|+...+.-.+.+...|..++..+.+.|++++|.
T Consensus 263 ~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 8877632 366778877777765 68876 89999999886323456888999999999999999999
Q ss_pred HHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHH--HhchhHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPN--VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHA--FLDI--IRTGEEVFGLLESMR 337 (481)
Q Consensus 264 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~--~~~~~~~~~~~~~~~ 337 (481)
.+|+++.+. .|+ ...|...+..+.+.|++++|..+|+...+.... +...+.. .+.. ..+.+.+..+++...
T Consensus 342 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 342 SIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 999999986 343 247888888888999999999999999876322 2222222 2221 233456777888776
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 338 KMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN-GP--DRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 338 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.. +.+...+..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+.++++++.+.
T Consensus 419 ~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 653 44678899999999999999999999999988642 23 2458888888888999999999999998764
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.5e-13 Score=131.29 Aligned_cols=269 Identities=13% Similarity=0.037 Sum_probs=190.6
Q ss_pred HHHhhcCHHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC----CCCCCcccHHHH
Q 042941 38 LSWVRNDWEAAFTFFLWAGKQ-------SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG----ETGPSLVTKQTL 106 (481)
Q Consensus 38 l~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~~ 106 (481)
+....++.++|++.|+....- ..-+....+|+.+..+|...|++++|...+++..+. .-..+...+.++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 333468899999988876521 112234678999999999999999999999887542 111122236677
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH---HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 107 LILIRRYCAV--HDVGRAINAFYAYKRFKFAVGIEDFQGLLSA---LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 107 ~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
.....++... +++++|+..|++..+... -++..+..+..+ +...++.++|++.+++.....|.+...+..+...
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 7666555554 579999999999988652 245555554444 4556788889988877554455566666666554
Q ss_pred HH---HhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--
Q 042941 182 WC---NIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG-- 256 (481)
Q Consensus 182 ~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 256 (481)
+. ...+++++|.+.+++....... +..++..+...|...|++++|...++...+.. +-+..++..+..+|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 44 1346788999999988776443 66778889999999999999999999998874 44566676666655332
Q ss_pred -----------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 257 -----------------RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 257 -----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (481)
+.++.|...++...+.... +..++..+...|...|++++|...|++..+....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 2356788888888776543 6778888999999999999999999999886543
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=1.6e-11 Score=124.73 Aligned_cols=342 Identities=11% Similarity=0.052 Sum_probs=251.4
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHH
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~ 121 (481)
+.+..+..++..... . .+ ...+...+...|.+++|..+|++... . ..+.+.++. ..+++++
T Consensus 1034 kaD~~Rv~eyI~kLd-~----~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~---~~A~~VLie---~i~nldr 1094 (1630)
T 1xi4_A 1034 KADRTRVMEYINRLD-N----YD---APDIANIAISNELFEEAFAIFRKFDV-----N---TSAVQVLIE---HIGNLDR 1094 (1630)
T ss_pred HhChhhHHHHHHHhh-h----cc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----H---HHHHHHHHH---HHhhHHH
Confidence 345555555555542 1 12 34477888899999999999999742 2 344455544 6688999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
|.++.++. -++.+|..+..++...|++++|...|.+. .|...|..++..+. +.|++++|.+.|....+
T Consensus 1095 AiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~-~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1095 AYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHh
Confidence 99999865 25778899999999999999999999764 47788889999999 99999999999998776
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhH
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTY 281 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (481)
.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 64 33333345889999999988644442 2 456677888999999999999999999985 379
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF 361 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 361 (481)
..+..+|++.|++++|.+.+++. .+..+|..+-.+|...++.......-. ++..++..+..++..|.+.|.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl--~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL--HIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH--hhhcCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999976 356888888888877776533333222 2455777888999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC------CHhHHHHHHHHHhhhhHHHHH
Q 042941 362 GNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ-LLP------EPKTDELLQDWSYNKQFVERQ 434 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p------~~~~~~~l~~~~~~~~~~~~~ 434 (481)
++|+.+++...... +-....|+-+..+|.+. ++++..+.++...+++ +.| +...|.-+.-.+.+.++.+.|
T Consensus 1297 eEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1297 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999998877643 22344677777777765 3444444433333432 222 234566666677788888888
Q ss_pred HHHHhhcC
Q 042941 435 IASLKAHQ 442 (481)
Q Consensus 435 ~~~~~~~~ 442 (481)
+....++.
T Consensus 1375 ~~tm~~h~ 1382 (1630)
T 1xi4_A 1375 IITMMNHP 1382 (1630)
T ss_pred HHHHHhcc
Confidence 86666653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.9e-14 Score=124.24 Aligned_cols=226 Identities=12% Similarity=0.002 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CC----H
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA--VG----I 138 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~ 138 (481)
...+..+...+...|++++|...|++..+.. .+ ..++..+...+...|++++|+..++...+.... ++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 5678888899999999999999999998875 44 788999999999999999999999998864322 12 5
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY 218 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 218 (481)
.++..+..++...|++++|...|++..... |+ ...+. ..|++++|...++.+...... +...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~-------~~~~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RT-------ADILT-KLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-------HHHHH-HHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC-ch-------hHHHH-HHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHH
Confidence 778889999999999999999998854422 33 23455 788899999999998876332 556788888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEAR 298 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 298 (481)
...|++++|...++...+.. +.+..++..+..++...|++++|...|++..+.... +...|..+...+...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999998875 557888999999999999999999999999887543 6788889999999999999999
Q ss_pred HHHHHHHHC
Q 042941 299 QAFDEMLQR 307 (481)
Q Consensus 299 ~~~~~m~~~ 307 (481)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=3.2e-14 Score=120.45 Aligned_cols=196 Identities=11% Similarity=-0.001 Sum_probs=137.7
Q ss_pred CCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHH
Q 042941 136 VGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCII 215 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 215 (481)
+++..+..+...+.+.|++++|...|++.....|.+...+..+...+. ..|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344455555566666666666666666554445555666666666666 666666666666666655322 445566666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042941 216 SCYSKA-----------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSL 284 (481)
Q Consensus 216 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (481)
.++... |++++|...++...+.. +-+...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 99999999999999874 4567889999999999999999999999999887 588899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 285 IKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
..+|...|++++|...|++..+... .+...+..+...+...++..+.+..+.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999988642 256677777778877776655544443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7e-14 Score=121.81 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCC---c----hHhH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPF---N----TKSF 175 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~ 175 (481)
...+..+...+...|++++|+..|+.+.+.. .+..++..+..++...|++++|...+++.....+. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556666667777777777777777776655 45556666666666666666666666543221111 1 2444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042941 176 NIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK 255 (481)
Q Consensus 176 ~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (481)
..+...+. ..|++++|...|+...... |+. ..+..
T Consensus 83 ~~l~~~~~-~~~~~~~A~~~~~~a~~~~-------------------------------------~~~-------~~~~~ 117 (258)
T 3uq3_A 83 ARIGNAYH-KLGDLKKTIEYYQKSLTEH-------------------------------------RTA-------DILTK 117 (258)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHC-------------------------------------CCH-------HHHHH
T ss_pred HHHHHHHH-HcccHHHHHHHHHHHHhcC-------------------------------------chh-------HHHHH
Confidence 44444444 4555555555555444431 221 22333
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHH
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLES 335 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 335 (481)
.|++++|...++.+...... +...+..+...+...|++++|...+++..+..
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------- 169 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------- 169 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred HhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------------------
Confidence 34455555555555443221 33444455555555555555555555554421
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 336 MRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+.+..++..+...|...|++++|...+++..+... .+...|..+...+.+.|++++|...+++..+
T Consensus 170 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 170 ------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 12234455555555555666666666655555321 2355555556666666666666666655544
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.1e-13 Score=116.62 Aligned_cols=200 Identities=9% Similarity=-0.042 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|.+.|+++.+. ++.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 566777777778888888888888887765 22236777777778888888888888888777654 2355666677
Q ss_pred HHHHHcCCChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
..++...|++++|...+++... ..+.+...+..+...+. ..|++++|...+++....... +...+..+...+...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC
Confidence 7777777777777777766544 33445556666666666 677777777777766655322 4556666666677777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777666543 345556666666666677777777777666654
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=6.2e-13 Score=113.10 Aligned_cols=199 Identities=10% Similarity=-0.084 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|...|+.+.+. ++.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 445555555566666666666666655543 22224555555555566666666666665555433 2234444555
Q ss_pred HHHHHcC-CChhhHHHHHhhccC--CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc
Q 042941 145 LSALCRY-KNVQDAEHLMFCNKD--VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA 221 (481)
Q Consensus 145 l~~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 221 (481)
...+... |++++|...+++... ..+.+...+..+...+. ..|++++|...++++.+.... +...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-KQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 5555555 555555555544333 12222344444444444 455555555555544443211 234444444445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
|++++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555555544443210233444444444444455555544444444
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.4e-13 Score=116.38 Aligned_cols=202 Identities=12% Similarity=-0.031 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5678888899999999999999999998765 346788899999999999999999999986655566788899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
. ..|++++|...++++...+..| +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++
T Consensus 116 ~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 Y-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp H-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred H-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9 9999999999999998733344 45678888899999999999999999998875 4568889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999988644 367778888899999999999999999998764
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=5.8e-13 Score=113.28 Aligned_cols=210 Identities=9% Similarity=-0.096 Sum_probs=177.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
+..++..+...+...|++++|+..++.+.+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 47788899999999999999999999998765 34678889999999999999999999998665566678889999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 042941 182 WCNII-GSSREAERVWMEMSQRGICYD-VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV 259 (481)
Q Consensus 182 ~~~~~-~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (481)
+. .. |++++|...++.+...+..|+ ...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++
T Consensus 86 ~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99 99 999999999999988333333 5678888999999999999999999998874 45688899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042941 260 KDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTY 316 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 316 (481)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.. |+....
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHH
Confidence 9999999999887542467778888888899999999999999987643 444333
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=9.4e-14 Score=119.87 Aligned_cols=202 Identities=8% Similarity=0.014 Sum_probs=117.5
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.+...|..+...+...|++++|...|+++.+. ++.+..++..+...+...|++++|+..++.+.+.. +.+...+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp ---------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 45566777777778888888888888888775 33336777777778888888888888888777654 23556666
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR 222 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 222 (481)
.+...+...|++++|...+++.....+.+...+..+...+. ..|++++|...++++...... +...+..+...+...|
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcC
Confidence 66677777777777777776654444455566666666666 667777777766666554322 4455566666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 223 NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666666666553 334556666666666666666666666666554
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=3.9e-13 Score=118.22 Aligned_cols=234 Identities=12% Similarity=-0.039 Sum_probs=128.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--HHhHHHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG--IEDFQGL 144 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 144 (481)
.+......+...|++++|...|++..+. ++.+..++..+...+...|++++|+..++...+....|+ ..+|..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3444555556666666666666666554 222234555555566666666666666666655221111 2225556
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
..++...|++++|...|++.....+.+...+..+...+. ..|++++|...|++..+... .+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 666666666666666666544434445556666666666 66666666666666555422 1344444444233334466
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCCH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL---VKDAISLMKSMEEKG-VAPN------VVTYNSLIKPLCKARKL 294 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~ 294 (481)
++|...|+.+.+.. +.+...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 66666666666553 3334555555555655555 555666666554431 1112 13455566666666777
Q ss_pred HHHHHHHHHHHHC
Q 042941 295 DEARQAFDEMLQR 307 (481)
Q Consensus 295 ~~a~~~~~~m~~~ 307 (481)
++|...|++..+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777766654
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.1e-13 Score=121.80 Aligned_cols=225 Identities=12% Similarity=-0.047 Sum_probs=136.9
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD 156 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 156 (481)
..|++++|+..|+.+.+.....++.+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346667777777776665322222345566666667777777777777777766643 2355666667777777777777
Q ss_pred HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 157 AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
|...|++.....|.+...+..+...+. ..|++++|...|+.+.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777776654444455666777777777 6777777777777766642 2322333333444556777777777766655
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP---NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
.. +++...+ .++..+...++.++|...+....+..... +..++..+...|...|++++|...|++..+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 42 3333333 35555666666677777776664432110 1455666677777777777777777777664
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=8.7e-13 Score=115.95 Aligned_cols=240 Identities=10% Similarity=-0.011 Sum_probs=152.0
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISC 217 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~ 217 (481)
.+......+...|++++|+..|++.....|.+...+..+...+. ..|++++|...++.....+..++ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33445555666666666666666544444445556666666666 67777777777777666321111 2336667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+...|++++|...|+...+.. +.+..++..+..+|...|++++|...|++..+.... +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777654 345567777777777888888888877777665332 455555555233344578888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHC
Q 042941 298 RQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISEN 374 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~ 374 (481)
...|++..+.. +.+...+..+...+...|+ +++|...+++..+.
T Consensus 162 ~~~~~~a~~~~---------------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 162 DSSFVKVLELK---------------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHHHHHHHS---------------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC---------------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 88877776642 1223445555566666666 77777777776552
Q ss_pred C-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 375 G-NGPD------RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 375 ~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
. ..|+ ...|..+...|.+.|++++|.+.|++..+. .|+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 256 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKK 256 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHH
Confidence 1 1122 246777888888888888888888888764 455443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=9.7e-13 Score=120.55 Aligned_cols=233 Identities=6% Similarity=-0.031 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD-VGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
..+|..+..++.+.|++++|+..|+...+. ++.+..+|..+...+...|+ +++|+..|+++.+.+. -+...|..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 567888889999999999999999999886 44558899999999999996 9999999999998763 37788999
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh-cC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK-AR 222 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~~ 222 (481)
+..++...|++++|+..|++.....|.+...|..+..++. ..|++++|+..|+++.+.... +...|+.+..++.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 9999999999999999999876666778899999999999 899999999999999987554 67788888888888 56
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---
Q 042941 223 NLHKV-----LRLFDQMKRMGIECDRKVYNAVIHALAKGR--LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR--- 292 (481)
Q Consensus 223 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 292 (481)
..++| +..|+...... +-+...|..+..++...| ++++|...+.++ +.. +.+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 57888888764 456778888888888888 688999999888 433 336677888888888864
Q ss_pred ------CHHHHHHHHHHH-HHC
Q 042941 293 ------KLDEARQAFDEM-LQR 307 (481)
Q Consensus 293 ------~~~~a~~~~~~m-~~~ 307 (481)
.+++|..+|+.+ .+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHh
Confidence 258899999998 554
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.6e-13 Score=120.90 Aligned_cols=246 Identities=8% Similarity=-0.097 Sum_probs=188.1
Q ss_pred cCHHHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYA--HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~ 120 (481)
++.+.|+..++.+....... .+..++..+...+...|++++|...|+.+.+. ++.+..++..+...+...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHH
Confidence 67789999999987553222 25788999999999999999999999999886 3334889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMS 200 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 200 (481)
+|+..|+++.+.. +.+..++..+..++...|++++|...|++.....+.+. .....+..+. ..|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAE-QKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH-HHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 9999999999865 33678899999999999999999999988655433333 3444444455 7799999999998877
Q ss_pred hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 042941 201 QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE---CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 201 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (481)
.... ++...+ .++..+...++.++|...+......... .+..++..+..+|...|++++|...|++..+.. |+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 6532 233334 4677778888899999999887654211 125788889999999999999999999999864 32
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHH
Q 042941 278 VVTYNSLIKPLCKARKLDEARQAF 301 (481)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~a~~~~ 301 (481)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233355677788888887766
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=5.1e-13 Score=115.22 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=159.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
++.++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 36677888888999999999999999998754 34678888999999999999999999998665566678889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (481)
+. ..|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 101 ~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YV-VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HH-HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 99 999999999999999887533 67788889999999999999999999998874 4578889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
|...|+++.+.... +..++..+...|...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999887543 67789999999999999999999999998764
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.4e-11 Score=108.29 Aligned_cols=224 Identities=13% Similarity=0.041 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA----VHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
+..++..+...+...|++++|...|+...+.+ + ..++..+...+.. .+++++|+..|++..+.+ ++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 56788888888999999999999999888731 3 6678888888888 999999999999988865 677
Q ss_pred hHHHHHHHHHc----CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCcccHHhH
Q 042941 140 DFQGLLSALCR----YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSREAERVWMEMSQRGICYDVVSF 211 (481)
Q Consensus 140 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 211 (481)
.+..+...|.. .+++++|...|++.... .+...+..+...|. . .+++++|...|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 88888888888 99999999999874432 26777888888888 7 899999999999988875 55667
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHH
Q 042941 212 SCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDAISLMKSMEEKGVAPNVVTYNS 283 (481)
Q Consensus 212 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (481)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777788887 899999999999988875 56778888888888 999999999999988874 3667777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCC
Q 042941 284 LIKPLCK----ARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 284 li~~~~~----~g~~~~a~~~~~~m~~~~ 308 (481)
+...|.. .+++++|...|++..+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888 899999999999988775
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.6e-11 Score=107.89 Aligned_cols=189 Identities=8% Similarity=0.023 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 042941 174 SFNIILNGWCNI----IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMGIECDRKV 245 (481)
Q Consensus 174 ~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (481)
.+..+...+. . .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...
T Consensus 40 a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 112 (273)
T 1ouv_A 40 GCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEG 112 (273)
T ss_dssp HHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccH
Confidence 3444444444 4 555555555555555543 44455555555555 666666666666665543 4555
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042941 246 YNAVIHALAK----GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGISPTIRTYH 317 (481)
Q Consensus 246 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 317 (481)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------- 180 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--------- 180 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------
Confidence 5556666666 666666666666666543 34455555555555 666666666666655432
Q ss_pred HHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 042941 318 AFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL- 392 (481)
Q Consensus 318 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 392 (481)
+...+..+...|.. .+++++|...+++..+.+ +...+..+...|.+
T Consensus 181 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 181 --------------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred --------------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 12344445555666 677777777777776653 25566666777776
Q ss_pred ---cCCHHHHHHHHHHHHHCC
Q 042941 393 ---NGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 393 ---~g~~~~A~~~~~~m~~~~ 410 (481)
.+++++|.+.|++..+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 777777777777776643
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=2e-12 Score=118.43 Aligned_cols=252 Identities=9% Similarity=0.020 Sum_probs=192.5
Q ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC-hhhHHHHHhhccCCCCCchHhHHHH
Q 042941 100 LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN-VQDAEHLMFCNKDVFPFNTKSFNII 178 (481)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l 178 (481)
+....+|..+...+...|++++|+..++++.+.+ +-+..+|+.+..++...|+ +++|+..|++.....|.+...|+.+
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3346788888888999999999999999999865 3367788889999999996 9999999988766667788889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK-GR 257 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 257 (481)
...+. ..|++++|+..|+++...... +...|..+..++.+.|++++|+..++.+.+.. +-+...|+.+..++.. .|
T Consensus 173 g~~~~-~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVE-WLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHH-HHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 99988 899999999999998887544 67788888889999999999999999998875 4577888888888888 66
Q ss_pred ChHHH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHH
Q 042941 258 LVKDA-----ISLMKSMEEKGVAPNVVTYNSLIKPLCKAR--KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVF 330 (481)
Q Consensus 258 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 330 (481)
..++| +..|++..+..+. +...|+.+...+...| ++++|.+.+..+ +. .
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~-------------------- 305 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--S-------------------- 305 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--T--------------------
T ss_pred cchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--C--------------------
Confidence 65777 4788888776544 6677888888888777 577888777776 22 1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 042941 331 GLLESMRKMGCQPTNDTYIMLIKKFSRWR---------QFGNVFKVWNEI-SENGNGPDRSSYTALIHALF 391 (481)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 391 (481)
+.+...+..+...|.+.| .+++|.++++++ .+.+. .....|..+...+.
T Consensus 306 -----------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 306 -----------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 334556666666666653 257888888888 55321 23345555555443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-12 Score=122.94 Aligned_cols=209 Identities=12% Similarity=0.086 Sum_probs=141.4
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-cccHHhHHHHHHHHHhcCC-----------------HHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQR----GI-CYDVVSFSCIISCYSKARN-----------------LHKVLR 229 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~ll~~~~~~~~-----------------~~~a~~ 229 (481)
...+..+...+. ..|++++|...+++.... +- .....++..+...|...|+ +++|..
T Consensus 126 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 344555556666 667777777666655433 11 1123456667777777777 778877
Q ss_pred HHHHHHHc----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHH
Q 042941 230 LFDQMKRM----GI-ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 230 ~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 299 (481)
.+++..+. +. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77765442 11 112346777888888899999999998887653211 11 2367788889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 042941 300 AFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN---- 374 (481)
Q Consensus 300 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 374 (481)
.+++..+... +.+. .....++..+...|...|++++|...+++..+.
T Consensus 285 ~~~~al~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 285 HYKRTLALAV----------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 9988755310 0000 011346777888999999999999999988652
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 375 GN-GPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 375 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+. .....++..+...|.+.|++++|..++++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 112447888899999999999999999998763
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.3e-11 Score=107.89 Aligned_cols=220 Identities=5% Similarity=-0.085 Sum_probs=166.8
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCA-------VHDV-------GRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
++|..+|++.... ++.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..
T Consensus 33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 6788888888775 44457888887777653 4775 8899999998873113356678888888
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHH-HhcCCHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTK-SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCY-SKARNLH 225 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~ 225 (481)
+.+.|++++|..+|++.....|.+.. .|..+...+. +.|++++|..+|++..+.+.. +...|....... ...|+++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999886654444454 7888888888 889999999999988876432 334444333332 2368999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG-VAP--NVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888763 4467888888899999999999999999998863 344 45678888888888999999999999
Q ss_pred HHHHCC
Q 042941 303 EMLQRG 308 (481)
Q Consensus 303 ~m~~~~ 308 (481)
.+.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887753
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=1.5e-11 Score=116.24 Aligned_cols=337 Identities=12% Similarity=0.024 Sum_probs=216.4
Q ss_pred hcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh---hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-
Q 042941 42 RNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF---DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH- 117 (481)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~- 117 (481)
.++.++|++.|+..... | +..++..+...+...|+. ++|...|+...+. + +.++..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~---~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----S---PRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-T---CCTGGGTCC-----------------------------------CHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----C---HHHHHHHHHHHHhCCC
Confidence 57889999999998643 3 445566677777778888 8999999998864 3 456666666454544
Q ss_pred ----CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhh---HHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH
Q 042941 118 ----DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQD---AEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR 190 (481)
Q Consensus 118 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (481)
++++|+..|++..+.|. +..+..|...|...+..+. +.+.+...... .+......+...|. ..+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~-~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYR-TQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHH-HHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCcc
Confidence 78999999999998663 2366677777776665443 44444432211 23456666777777 666444
Q ss_pred ----HHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCh
Q 042941 191 ----EAERVWMEMSQRGICYDVVSFSCIISCYSKAR---NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG----RLV 259 (481)
Q Consensus 191 ----~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~ 259 (481)
.+..+++..... +...+..+...|...| ++++|+..|+...+.| .++...+..+...|... +++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 444444444332 3347788888898999 8999999999999987 55666666777777655 799
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhch----hHHHHH
Q 042941 260 KDAISLMKSMEEKGVAPNVVTYNSLIKP-L--CKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTG----EEVFGL 332 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~~ 332 (481)
++|...|++.. . -+...+..+-.. | ...+++++|...|++..+.| +...+..+-..|... .+..+.
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999987 3 355666666666 3 46899999999999999887 455555555555421 144444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSR----WRQFGNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYM 404 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 404 (481)
+..+.+.- +-+...+..+...|.. ..++++|...|++..+.|. ...+..|...|.. ..+.++|..+|+
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 44444444 5677777778777766 4489999999999988764 3345566666654 458999999999
Q ss_pred HHHHCCC
Q 042941 405 EMKEKQL 411 (481)
Q Consensus 405 ~m~~~~~ 411 (481)
...+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 9998774
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=8.5e-13 Score=123.26 Aligned_cols=303 Identities=12% Similarity=-0.002 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KFAV 136 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~ 136 (481)
.....+......+...|++++|...|++..+.+ |+.. ...++..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456667777888888899999999998887752 2211 1356777888888889999998888876532 2112
Q ss_pred -CHHhHHHHHHHHHcCCChhhHHHHHhhccCCC------CCchHhHHHHHHHHHHhcCC--------------------H
Q 042941 137 -GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVF------PFNTKSFNIILNGWCNIIGS--------------------S 189 (481)
Q Consensus 137 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~--------------------~ 189 (481)
...++..+...+...|++++|...+++..... +....++..+...+. ..|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HcCCcccccccchhhhhhhhHHHHH
Confidence 24466777788888888888888876632211 111346667777777 7788 8
Q ss_pred HHHHHHHHHHHhc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCh
Q 042941 190 REAERVWMEMSQR----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-ECD----RKVYNAVIHALAKGRLV 259 (481)
Q Consensus 190 ~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~ 259 (481)
++|...+++.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888887765432 1111 234667777788888888888888887765310 111 23667777788888888
Q ss_pred HHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHH
Q 042941 260 KDAISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLE 334 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 334 (481)
++|...+++..+.... ++ ..++..+...|...|++++|...+++..+...
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------------------------- 298 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------------------------- 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-------------------------
Confidence 8888888876543111 01 44666777778888888888888877654210
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 042941 335 SMRKMGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GNGP-DRSSYTALIHALFLNGKL 396 (481)
Q Consensus 335 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 396 (481)
+.+. .....++..+...|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 299 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 ---ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 0000 001335666777778888888888888776542 1111 133455566666666654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=3.2e-12 Score=119.32 Aligned_cols=277 Identities=11% Similarity=0.041 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHcCCChhhHHHHHhhccC-----C-CCCch
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG----IEDFQGLLSALCRYKNVQDAEHLMFCNKD-----V-FPFNT 172 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~-~~~~~ 172 (481)
...+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++... + .+...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 667778888999999999999999999986422 3 35678888999999999999999876321 1 12235
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----c-ccHHhHHHHHHHHHhcCC--------------------HHHH
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGI----C-YDVVSFSCIISCYSKARN--------------------LHKV 227 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~----~-~~~~~~~~ll~~~~~~~~--------------------~~~a 227 (481)
.++..+...+. ..|++++|...+++...... . ....++..+...+...|+ +++|
T Consensus 88 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 88 KASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 56778888888 89999999999988765411 1 114477888889999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHH
Q 042941 228 LRLFDQMKRM----GIEC-DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 228 ~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a 297 (481)
...++...+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876543 2111 2346788889999999999999999988653111 11 23678888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 042941 298 RQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQ-PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGN 376 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 376 (481)
...+++..+... ..+.. ....++..+...|...|++++|...+++..+...
T Consensus 247 ~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 247 SEYYKKTLLLAR----------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 999988764210 00000 0134677888899999999999999998865211
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 377 -GPD----RSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 377 -~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
.++ ..++..+...|...|++++|...+++..+.
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112 557888899999999999999999987654
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=7.4e-11 Score=105.61 Aligned_cols=221 Identities=5% Similarity=-0.091 Sum_probs=177.3
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh-------ccCCh-------hHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 042941 46 EAAFTFFLWAGKQSGYAHSTREYHTMIAILG-------KVRKF-------DTAWALIDEMRGGETGPSLVTKQTLLILIR 111 (481)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~p~~~~~~~~~~li~ 111 (481)
+.|...|+.+.... +.+...|..++..+. +.|++ ++|..+|++..+. +.| .+...|..++.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p--~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK--KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCc--ccHHHHHHHHH
Confidence 56777888876543 257888888888876 35886 8999999999883 233 34779999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCC-HH-hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVG-IE-DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
.+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++.....+.+...|...........|++
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999985 343 43 79999999999999999999999976655566666654444322136999
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IEC--DRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
++|..+|+...+.... +...|..++..+.+.|++++|..+|+...... ++| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998876332 67788899999999999999999999999863 454 4668888999999999999999999
Q ss_pred HHHHHcCC
Q 042941 267 KSMEEKGV 274 (481)
Q Consensus 267 ~~~~~~~~ 274 (481)
+++.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99988643
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=2.4e-12 Score=116.63 Aligned_cols=271 Identities=11% Similarity=0.031 Sum_probs=165.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHcCCChhhHHHHHhhccC------CCCCchHhHHHH
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVG----IEDFQGLLSALCRYKNVQDAEHLMFCNKD------VFPFNTKSFNII 178 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l 178 (481)
....+...|++++|+..|+++.+.... + ...+..+...+...|++++|...+++... ..+.....+..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 334444455555555555554443211 1 23344444555555555555555443211 011123445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----Cc-ccHHhHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRG----IC-YDVVSFSCIISCYSKARN--------------------LHKVLRLFDQ 233 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~ 233 (481)
...+. ..|++++|...+++..... -. ....++..+...+...|+ +++|...++.
T Consensus 90 ~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 90 GNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666 6777777777776654321 11 113356666777777777 7777777766
Q ss_pred HHHc----CCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 234 MKRM----GIE-CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA-P----NVVTYNSLIKPLCKARKLDEARQAFDE 303 (481)
Q Consensus 234 ~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~ 303 (481)
.... +.. ....++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 111 12346777788888889999999888877643110 1 123677788888999999999999988
Q ss_pred HHHCCCC-CCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-C
Q 042941 304 MLQRGIS-PTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GN-G 377 (481)
Q Consensus 304 m~~~~~~-p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~ 377 (481)
..+.... ++. .....++..+...+...|++++|...+++..+. +. .
T Consensus 249 al~~~~~~~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 249 TLLLARQLKDR----------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHTTCH----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhhcch----------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 7542100 000 011346777888899999999999999987652 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 378 PDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
....++..+...|.+.|++++|..++++..+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11447778899999999999999999998764
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.8e-12 Score=121.44 Aligned_cols=279 Identities=12% Similarity=-0.009 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-CCC
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KF-AVG 137 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 137 (481)
...+..+...+...|++++|...|++..+. .|+.. ...++..+...+...|++++|+..+++..+. +. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 445556777888999999999999999886 23311 1257888889999999999999999888753 11 223
Q ss_pred HHhHHHHHHHHHcCCChhhHHHHHhhccCC------CCCchHhHHHHHHHHHHhcCC-----------------HHHHHH
Q 042941 138 IEDFQGLLSALCRYKNVQDAEHLMFCNKDV------FPFNTKSFNIILNGWCNIIGS-----------------SREAER 194 (481)
Q Consensus 138 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-----------------~~~a~~ 194 (481)
..++..+...|...|++++|...+++.... .+....++..+...+. ..|+ +++|..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH-AKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HcCcccccccchhhhhhhhHHHHHHHH
Confidence 466788889999999999999998774321 2233457778888888 8999 999999
Q ss_pred HHHHHHhc----CCc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCChHHHHH
Q 042941 195 VWMEMSQR----GIC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE-CD----RKVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 195 ~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~ 264 (481)
.+++.... +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+..+|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 98876543 111 12347788889999999999999999988764210 11 2377888999999999999999
Q ss_pred HHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc
Q 042941 265 LMKSMEEKGVA-----PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM 339 (481)
Q Consensus 265 ~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~ 339 (481)
.+++..+.... ....++..+...|...|++++|...+++..+... +.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~ 336 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ----------------------------EL 336 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------HC
Confidence 99988654211 1146678888899999999999999998765310 00
Q ss_pred CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042941 340 GC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374 (481)
Q Consensus 340 ~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (481)
+. .....++..+...|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00 011346777888999999999999999988774
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=1.3e-11 Score=101.37 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
+..+|..+...+.+.|++++|++.|++..+. +|.+..++..+...+...|++++|+..+....... +.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 3445555555555555555555555555544 22234555555555555555555555555554432 123333444
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
+...+...++++.+...+.+.....|.+...+..+...+. ..|++++|++.|++..+.... +..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCC
Confidence 4444444444444444444433333333444444444444 444444444444444433221 33344444444444444
Q ss_pred HHHHHHHHHHHHH
Q 042941 224 LHKVLRLFDQMKR 236 (481)
Q Consensus 224 ~~~a~~~~~~~~~ 236 (481)
+++|...|++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6.6e-12 Score=119.42 Aligned_cols=214 Identities=11% Similarity=0.022 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHH
Q 042941 81 FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV-GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEH 159 (481)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 159 (481)
++++...++..... ++.....+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|..
T Consensus 84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666665544 222366666666677777777 77777777766544 2245666667777777777777777
Q ss_pred HHhhccCCCCCchHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc--------C
Q 042941 160 LMFCNKDVFPFNTKSFNIILNGWCNII---------GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA--------R 222 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--------~ 222 (481)
.|++..... |+...+..+...+. .. |++++|+..|++..+.... +...|..+..+|... |
T Consensus 159 ~~~~al~~~-p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC-KNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 776644332 34566666666666 66 7777777777777665433 456677777777776 7
Q ss_pred CHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 223 NLHKVLRLFDQMKRMGIE---CDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
++++|...|+...+.. + .+...|..+..+|...|++++|...|++..+.... +...+..+...+...|++++|..
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777877777777753 2 36677777777777788888888888777766433 55567777777777777777777
Q ss_pred HHHHH
Q 042941 300 AFDEM 304 (481)
Q Consensus 300 ~~~~m 304 (481)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66554
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=2.9e-11 Score=99.23 Aligned_cols=166 Identities=12% Similarity=0.058 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..+|..+...+...|++++|+..|++..+.+ +-++.++..+..+|.+.|++++|...+.......+.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 6677777777777888888888887777654 235566667777777777777777777665444444555566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ..++++.+...+......... +...+..+..++.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 84 ~-~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 F-MIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred H-HcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 6 667777777766666554322 45556666666666666777766666666653 34556666666666666666666
Q ss_pred HHHHHHHHHc
Q 042941 263 ISLMKSMEEK 272 (481)
Q Consensus 263 ~~~~~~~~~~ 272 (481)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666666553
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=2.4e-12 Score=116.65 Aligned_cols=278 Identities=12% Similarity=-0.006 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-CH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV--TKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KFAV-GI 138 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 138 (481)
..+......+...|++++|...|+++.+.. |+.. ....+..+...+...|++++|+..+++.... +..| ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345555677788899999999998887752 2211 1356777888888889999999888876542 1111 24
Q ss_pred HhHHHHHHHHHcCCChhhHHHHHhhccCC---C---CCchHhHHHHHHHHHHhcCC--------------------HHHH
Q 042941 139 EDFQGLLSALCRYKNVQDAEHLMFCNKDV---F---PFNTKSFNIILNGWCNIIGS--------------------SREA 192 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~--------------------~~~a 192 (481)
.++..+...+...|++++|...+.+.... . +....++..+...+. ..|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56777888888999999999888763221 1 111336777778888 8888 8999
Q ss_pred HHHHHHHHhc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHcCCChHHH
Q 042941 193 ERVWMEMSQR----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IE-CDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 193 ~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~a 262 (481)
...+++.... +..+ ...++..+...+...|++++|...++...+.. .. ....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9888876542 2111 23467788889999999999999998876531 11 1123778888899999999999
Q ss_pred HHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHH
Q 042941 263 ISLMKSMEEKGVA-PN----VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMR 337 (481)
Q Consensus 263 ~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 337 (481)
...+++..+.... ++ ..++..+...|...|++++|...+++..+...
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------------------- 294 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ---------------------------- 294 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------------------------
Confidence 9999987653111 11 45677788899999999999999998765310
Q ss_pred HcCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 042941 338 KMGC-QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN 374 (481)
Q Consensus 338 ~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 374 (481)
..+. .....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0000 111346777888999999999999999998774
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=3.7e-11 Score=111.29 Aligned_cols=233 Identities=9% Similarity=0.031 Sum_probs=167.0
Q ss_pred HHHHHHcCCChhhHHHHHhhccCC---CCC---chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CcccHHhH
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDV---FPF---NTKSFNIILNGWCNIIGSSREAERVWMEMSQR----G--ICYDVVSF 211 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g--~~~~~~~~ 211 (481)
....+...|++++|...|++.... .+. ...++..+...+. ..|++++|...+++..+. + ......++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 556677889999999998774332 111 3457788888888 899999999999877653 1 11124577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CC-CCChhhH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGI-ECD----RKVYNAVIHALAKGRLVKDAISLMKSMEEK----GV-APNVVTY 281 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 281 (481)
+.+...|...|++++|...++...+... .++ ..++..+..+|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 8888999999999999999988775310 011 247788999999999999999999988762 22 3345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 042941 282 NSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ- 360 (481)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 360 (481)
..+...|...|++++|...+++..+.. .+.+-+.....+..+...+...|+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYS----------------------------QKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH----------------------------HHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 888999999999999999999875531 000101112234557777788888
Q ss_pred --hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 361 --FGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 361 --~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+++|..++++. +..|+ ...+..+...|...|++++|..++++..+
T Consensus 320 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 320 EAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677766655 22222 34677888999999999999999998765
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.4e-12 Score=115.45 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCC----CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------C
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGET----GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF------K 133 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~ 133 (481)
+..++..+...+...|++++|..+|+++.+... ..++....++..+...+...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 467888899999999999999999998876200 013334677888999999999999999999988754 2
Q ss_pred C-CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCC--------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 042941 134 F-AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDV--------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-- 202 (481)
Q Consensus 134 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-- 202 (481)
. +....++..+...+...|++++|...+++.... .+.....+..+...+. ..|++++|...+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Confidence 1 223567888899999999999999999774321 2334566788888888 999999999999988764
Q ss_pred ----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHcCCChHHHH
Q 042941 203 ----GICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG-------IECDR-------KVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 203 ----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~a~ 263 (481)
+..| ...++..+..++...|++++|...++++.+.. ..+.. ..+..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2122 34577888899999999999999999887631 11111 12222333344455566666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 264 SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..+........ ....++..+...|...|++++|...|++..+
T Consensus 265 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 265 GWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66766655422 2566788899999999999999999998765
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=1.8e-11 Score=116.42 Aligned_cols=213 Identities=13% Similarity=0.049 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh-hhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 118 DVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV-QDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
.+++++..++...... +.+...+..+..++...|++ ++|+..|++.....|.+...|..+...|. ..|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3566666666655433 34667777777888888888 88888887755445556777777888877 788888888888
Q ss_pred HHHHhcCCcccHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CCh
Q 042941 197 MEMSQRGICYDVVSFSCIISCYSKA---------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG--------RLV 259 (481)
Q Consensus 197 ~~~~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 259 (481)
++..+.. |+...+..+...+... |++++|...|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8777663 5556777777777777 78888888888877764 44567777777777777 778
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHH
Q 042941 260 KDAISLMKSMEEKGVA--PNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 336 (481)
++|...|++..+.... -+...|..+..+|...|++++|...|++..+.... +...+..+...+...++..+.++..
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887775331 26677777777888888888888888877665422 3445555556665555555554433
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.5e-11 Score=108.72 Aligned_cols=239 Identities=12% Similarity=0.048 Sum_probs=144.7
Q ss_pred CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 042941 168 FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR-------GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM--- 237 (481)
Q Consensus 168 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 237 (481)
.+.+..++..+...+. ..|++++|..+++++.+. .......++..+...+...|++++|...++.....
T Consensus 23 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4556677888888888 899999999999888763 22334567888888999999999999999888764
Q ss_pred ---CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 238 ---GI-ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK------GV-APNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 238 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+. +....++..+...|...|++++|...++++.+. +. ......+..+...+...|++++|..++++..+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 234567888889999999999999999988764 21 22345677888899999999999999998866
Q ss_pred C------CCCCC-HHHHHHHHHHHhch---hHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHhcCChh
Q 042941 307 R------GISPT-IRTYHAFLDIIRTG---EEVFGLLESMRKM-------GCQPT-------NDTYIMLIKKFSRWRQFG 362 (481)
Q Consensus 307 ~------~~~p~-~~~~~~li~~~~~~---~~~~~~~~~~~~~-------~~~~~-------~~~~~~l~~~~~~~g~~~ 362 (481)
. +..|. ...+..+...+... +++...++...+. ...+. ...+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 4 11121 12233333333222 2233333333321 00000 011111222222333344
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
++...+....... +.+..++..+..+|.+.|++++|.++|++..+
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444433321 12345677777888888888888888877654
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=2.9e-10 Score=93.12 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=100.7
Q ss_pred hHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 140 DFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 140 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
.+..+...+...|++++|...+++.....+.+...+..+...+. ..|++++|...++.+.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555566666666666666554444455556666666666 66666666666666655422 24455666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ 299 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (481)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777666666553 345566666666666777777777777666655332 45566666666677777777777
Q ss_pred HHHHHHH
Q 042941 300 AFDEMLQ 306 (481)
Q Consensus 300 ~~~~m~~ 306 (481)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=1.4e-10 Score=107.46 Aligned_cols=309 Identities=9% Similarity=-0.016 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHh-----hcCHHHHHHHHHHhhhCC-CC--CCCHHHHHHHHHHH--hccCChhHHH-----------HHH
Q 042941 30 SSELVSEVLSWV-----RNDWEAAFTFFLWAGKQS-GY--AHSTREYHTMIAIL--GKVRKFDTAW-----------ALI 88 (481)
Q Consensus 30 ~~~~~~~~l~~~-----~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~ 88 (481)
+++.+...|... .++.+.|..+++.+.... .. .++...|-.++..- .-.+.++.+. +++
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 444445555432 478889998888886332 22 23344444444322 1223333344 666
Q ss_pred HHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-CHHhHHHHHHHHHcCCChhhHHHHHh
Q 042941 89 DEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF----KFAV-GIEDFQGLLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 89 ~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (481)
+.+.......+ ......+......+...|++++|+..|++..+. +..+ ...++..+..+|...|+++.|...+.
T Consensus 88 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 88 LEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66544210000 000111223556778899999999999998764 2112 34578889999999999999999987
Q ss_pred hccCC-------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc-ccHHhHHHHHHHHHhcCCHHHHHHH
Q 042941 163 CNKDV-------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GIC-YDVVSFSCIISCYSKARNLHKVLRL 230 (481)
Q Consensus 163 ~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~~~a~~~ 230 (481)
+.... .+....+++.+...|. ..|++++|...+++..+. +-. ....++..+..+|...|++++|...
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 73221 1122456788888888 999999999999887654 111 1124788899999999999999999
Q ss_pred HHHHHHc----CC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC---HHHHH
Q 042941 231 FDQMKRM----GI-ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG----VAPNVVTYNSLIKPLCKARK---LDEAR 298 (481)
Q Consensus 231 ~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~ 298 (481)
+++..+. +. +....++..+..+|.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|+
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9998772 33 3346678889999999999999999999876531 11122234556667777777 55555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 299 QAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 299 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
.++++. +.. +.....+..+...|...|++++|...+++..+
T Consensus 327 ~~~~~~---~~~-------------------------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK---MLY-------------------------------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT---TCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC---cCH-------------------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555543 111 11233566788899999999999999998765
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=9.2e-10 Score=101.45 Aligned_cols=267 Identities=9% Similarity=-0.096 Sum_probs=159.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHH----hHHHHHHHHHcCCChhhHHHHHhhccCC---C-CC--chHhHHHHHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIE----DFQGLLSALCRYKNVQDAEHLMFCNKDV---F-PF--NTKSFNIILNG 181 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~--~~~~~~~l~~~ 181 (481)
.+...|++++|...+++........+.. ++..+...+...|++++|...+.+.... . .+ ...++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555666655555554432111111 2334445555556666665555442110 0 00 11234455566
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----CCc--c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 042941 182 WCNIIGSSREAERVWMEMSQR----GIC--Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE----CDRKVYNAVI 250 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li 250 (481)
+. ..|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 103 ~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 103 LF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66 778888888887766543 211 2 2345566777788888888888888887664211 1234567777
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNV-VTYN-----SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~------------ 249 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN------------ 249 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc------------
Confidence 8888889999999888887654222211 1122 223346788999999988887654321110
Q ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 042941 325 TGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN----GNGPDR-SSYTALIHALFLNGKLEEA 399 (481)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A 399 (481)
......+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|
T Consensus 250 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 250 -----------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp -----------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 011224556677788889999999988877542 222222 2566677788899999999
Q ss_pred HHHHHHHHH
Q 042941 400 HQYYMEMKE 408 (481)
Q Consensus 400 ~~~~~~m~~ 408 (481)
...+++...
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=5.3e-11 Score=112.45 Aligned_cols=312 Identities=11% Similarity=0.019 Sum_probs=194.8
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDV---GRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+...+.+.|++++|.++|+...+.|. +.++..+...+...|+. ++|+..|++..+. ++..+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC------CTGGGTCC--------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 56677789999999999999977652 33455566666677877 8999999988753 55566667775
Q ss_pred HHcCC-----ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCcccHHhHHHHHHHHH
Q 042941 148 LCRYK-----NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS---REAERVWMEMSQRGICYDVVSFSCIISCYS 219 (481)
Q Consensus 148 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 219 (481)
+...+ +.++|...|++..... +...+..+...|. ..+.. .++.+.+......| +......+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYL-QYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHH-HCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 55554 7789999998854322 2336667777776 54443 33455555555444 3445666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----C
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR---LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA----R 292 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 292 (481)
..+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.|.. +...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 77755444443333332212233448888888999999 999999999999998754 555556677777554 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H-----hchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----Ch
Q 042941 293 KLDEARQAFDEMLQRGISPTIRTYHAFLDI-I-----RTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWR-----QF 361 (481)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 361 (481)
++++|..+|+... .|. ...+..+-.. + .+..++...++...+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 443 3333333333 2 23345577777766666 5667777777776 55 99
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 042941 362 GNVFKVWNEISENGNGPDRSSYTALIHALFL----NGKLEEAHQYYMEMKEKQL 411 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 411 (481)
++|...|++.. . -+...+..|...|.. ..++++|..+|++..+.|.
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999999887 3 467777778877776 3499999999999887664
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.6e-10 Score=93.41 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
+..+...+...|++++|+..++.+.+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+. .
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-Q 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-H
Confidence 3334444444444444444444443322 1233344444444444444444444444433223334445555555555 5
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
.|++++|...++.+..... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665555422 244555556666666666666666666665553 33455666666666666666666666
Q ss_pred HHHHHHc
Q 042941 266 MKSMEEK 272 (481)
Q Consensus 266 ~~~~~~~ 272 (481)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=9.3e-10 Score=101.60 Aligned_cols=313 Identities=9% Similarity=-0.010 Sum_probs=192.3
Q ss_pred CCCHHHHHHHHHHH--hccCChhHHHHHHHHHhcC--CCCCCcccHHHHHHHHHH--HHhcCCHHHH---------HHHH
Q 042941 62 AHSTREYHTMIAIL--GKVRKFDTAWALIDEMRGG--ETGPSLVTKQTLLILIRR--YCAVHDVGRA---------INAF 126 (481)
Q Consensus 62 ~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~~~~li~~--~~~~~~~~~a---------~~~~ 126 (481)
.|+..+-+.+-.-| .+.+++++|..+++++.+. .+..+. ....|-.++.. ....+..... ...+
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~-~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQ-DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCH-HHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 34555555555555 5677778887777776442 111121 12222333221 1111121122 2444
Q ss_pred HHHhhcCCCCCH----HhHHHHHHHHHcCCChhhHHHHHhhccCC---CC---CchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 127 YAYKRFKFAVGI----EDFQGLLSALCRYKNVQDAEHLMFCNKDV---FP---FNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 127 ~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
+.+.....+.+. ..+......+...|++++|...|++.... .+ ....++..+...|. ..|+++.|...+
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~ 164 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHI 164 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHH
Confidence 444332111111 11223445567888999999888774322 11 13456777888888 899999999988
Q ss_pred HHHHhc----CC-cc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChHHHHHH
Q 042941 197 MEMSQR----GI-CY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIEC-DRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 197 ~~~~~~----g~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
++..+. +. .+ ...+++.+..+|...|++++|.+.++...+. +..+ ...++..+..+|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 876553 11 11 2457778888999999999999999887653 2111 234677888899999999999999
Q ss_pred HHHHHH-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcC
Q 042941 266 MKSMEE-----KGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMG 340 (481)
Q Consensus 266 ~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 340 (481)
|++..+ .... ...++..+...|.+.|++++|...+++..+..... +
T Consensus 245 ~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~ 295 (378)
T 3q15_A 245 FQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----------------------------S 295 (378)
T ss_dssp HHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----------------------------C
T ss_pred HHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------------------------C
Confidence 998876 3332 36677888889999999999999999876642111 0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 341 CQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 341 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
.+.....+..+...+...++ +.+|...++. .+..|+ ...+..+...|...|++++|...|++..+
T Consensus 296 ~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 296 HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112234445555666666 6666666654 222222 33566788888999999999999888754
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=3.9e-09 Score=97.21 Aligned_cols=305 Identities=10% Similarity=-0.010 Sum_probs=198.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHhH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLV-TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG----IEDF 141 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 141 (481)
.......+...|++++|...+++........++. ...++..+...+...|++++|...+++....... ++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444456667899999999999877653111100 1225666677788899999999999887643211 12 2335
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccC-----CCC--C-chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc----ccHH
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKD-----VFP--F-NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGIC----YDVV 209 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~ 209 (481)
..+...+...|++++|...+++... +.+ | ....+..+...+. ..|++++|...+++....... ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6677888999999999999876321 111 2 3345666777888 899999999999987654221 1235
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHcCCChHHHHHHHHHHHHcCCCCC---hhh
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECD--RKVYN----AVIHALAKGRLVKDAISLMKSMEEKGVAPN---VVT 280 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 280 (481)
++..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998876421211 11111 233457799999999999998875432211 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 042941 281 YNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTN-DTYIMLIKKFSRWR 359 (481)
Q Consensus 281 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 359 (481)
+..+...+...|++++|...++...... ...+..++. ..+..+..++...|
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENA----------------------------RSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhCcchhhHHHHHHHHHHHHHHhC
Confidence 5677788899999999999998875431 011111111 24555677788999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+.++|...+++...... . ...+..+...| +....+++.+...
T Consensus 308 ~~~~A~~~l~~al~~~~--~----~g~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 308 RKSDAQRVLLDALKLAN--R----TGFISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CHHHHHHHHHHHHHHHH--H----HCCCHHHHTTH--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc--c----ccHHHHHHHcc--HHHHHHHHHHHhC
Confidence 99999999988765210 0 11223334444 4555666666553
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3.1e-10 Score=112.38 Aligned_cols=165 Identities=13% Similarity=0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
..+++.+...+...|++++|+..|++..+.. +-+..++..+..+|.+.|++++|+..|++.....|.+...|+.+...+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4555555555555566666666555555543 123455555555556666666666555554333344555666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ..|++++|++.|++..+.... +...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 88 ~-~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 K-EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp H-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred H-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 6 666666666666666655322 45566666666777777777777777666653 33456666677777777777766
Q ss_pred HHHHHHHHH
Q 042941 263 ISLMKSMEE 271 (481)
Q Consensus 263 ~~~~~~~~~ 271 (481)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=1.8e-07 Score=91.65 Aligned_cols=417 Identities=12% Similarity=0.068 Sum_probs=256.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhh--cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCC---hhHHHHHHHHH
Q 042941 17 EMRNKIEECGIKVSSELVSEVLSWVR--NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRK---FDTAWALIDEM 91 (481)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~ 91 (481)
.+.+.+.+. +-+.......+..+. +..+.+..+|+.+.... +.+...|...+..-.+.|+ ++.+..+|++.
T Consensus 54 ~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 444555543 347778888887763 46778888888887665 4567788888888888888 88999999888
Q ss_pred hcCCC-CCCcccHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-cCC-CC-CHHhHHHHHHHHHc---------
Q 042941 92 RGGET-GPSLVTKQTLLILIRRYCAVHDV--------GRAINAFYAYKR-FKF-AV-GIEDFQGLLSALCR--------- 150 (481)
Q Consensus 92 ~~~~~-~p~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~--------- 150 (481)
..... .|+ ...|..-+....+.++. +.+.++|+.... .|. .| +...|...+.....
T Consensus 130 l~~~~~~~s---v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 130 LSKELGNND---LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp TCSSSCCCC---HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHhcCCCCC---HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88631 244 77777766655555443 334577776653 455 44 34677777765543
Q ss_pred CCChhhHHHHHhhccCCCCCc--hHhHHHHHHHHHHhcC-------------CHHHHHHHHHHHHhc--CCc--------
Q 042941 151 YKNVQDAEHLMFCNKDVFPFN--TKSFNIILNGWCNIIG-------------SSREAERVWMEMSQR--GIC-------- 205 (481)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~-------------~~~~a~~~~~~~~~~--g~~-------- 205 (481)
.++++.+..+|++... .|.. ..+|..... +....+ +++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HhHHHHHHHHHHHHHh-CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2346678888887654 2222 233333222 221111 122333444433211 111
Q ss_pred -------c-----c---HHhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 206 -------Y-----D---VVSFSCIISCYSKAR-------NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 206 -------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
| + ...|...+..--..+ ..+.+..+|++.... .+-+...|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 123444443322222 123456678777765 3557788888888888889988996
Q ss_pred -HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHH
Q 042941 264 -SLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG---------ISPT------------IRTYHAFLD 321 (481)
Q Consensus 264 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~li~ 321 (481)
.+|++..... +.+...|...+...-+.|+++.|..+|+.+.+.. ..|+ ...|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998753 3366667778888888999999999999887631 0132 223555554
Q ss_pred HHhc---hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042941 322 IIRT---GEEVFGLLESMRKM-GCQPTNDTYIMLIKKFSRW-RQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKL 396 (481)
Q Consensus 322 ~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (481)
...+ .+.+..++....+. + ..+...|...+..-.+. ++.+.|..+|+...+. .+.+...|...+......|+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 4433 34567788877765 2 22233444333333344 4589999999998875 344677777888888889999
Q ss_pred HHHHHHHHHHHHCCCCC--CHhHHHHHHHH---HhhhhHHHHHHHHHhhcCccCC
Q 042941 397 EEAHQYYMEMKEKQLLP--EPKTDELLQDW---SYNKQFVERQIASLKAHQPQSG 446 (481)
Q Consensus 397 ~~A~~~~~~m~~~~~~p--~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
+.|..+|++.......+ ....|...+.. ++....+....+.+.+..|+++
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999988764322 22345555444 3444556677777777777654
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=3e-07 Score=90.12 Aligned_cols=403 Identities=10% Similarity=0.028 Sum_probs=261.4
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh--hcC---HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCCh-------
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV--RND---WEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKF------- 81 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~------- 81 (481)
.++.+++.+... ++.+......-+..- .+. .+.+..+|+........+|++..|...+....+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 345555555432 344555555444443 234 7889999999976554458999999999887776654
Q ss_pred -hHHHHHHHHHhc-CCC-CCCcccHHHHHHHHHHHH---------hcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 042941 82 -DTAWALIDEMRG-GET-GPSLVTKQTLLILIRRYC---------AVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALC 149 (481)
Q Consensus 82 -~~a~~~~~~~~~-~~~-~p~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 149 (481)
+...++|+.... .|. .|+ +...|...+.... .+++++.+..+|++++......-..+|......-.
T Consensus 163 r~~vr~~FErAl~~vG~~d~~--s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~ 240 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPK--SIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQ 240 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSS--CHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 334577777554 344 443 3667877776543 24567889999999886322222233332221111
Q ss_pred c-------------CCChhhHHHHHhh-------ccCCCCCc-------------------hHhHHHHHHHHHHhcC---
Q 042941 150 R-------------YKNVQDAEHLMFC-------NKDVFPFN-------------------TKSFNIILNGWCNIIG--- 187 (481)
Q Consensus 150 ~-------------~~~~~~a~~~~~~-------~~~~~~~~-------------------~~~~~~l~~~~~~~~~--- 187 (481)
. ..+++.|...+.. +....+.. ...|...+..-- ..+
T Consensus 241 ~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk-~~~~~l 319 (679)
T 4e6h_A 241 DVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES-DNKLEL 319 (679)
T ss_dssp HHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH-TCTTCC
T ss_pred hcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH-hCCccc
Confidence 1 1123334444432 11111110 134555554322 221
Q ss_pred ----CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 188 ----SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVL-RLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 188 ----~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
..+.+..+|++...... -+...|-..+..+...|+.++|. ++|+..... .+.+...|...+....+.|+++.|
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 13445677888776532 36777888888888889998996 999999875 456777788888899999999999
Q ss_pred HHHHHHHHHcCC---------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHH
Q 042941 263 ISLMKSMEEKGV---------APN------------VVTYNSLIKPLCKARKLDEARQAFDEMLQR-G-ISPTIRTYHAF 319 (481)
Q Consensus 263 ~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~l 319 (481)
..+|+.+.+... .|+ ...|...+....+.|+.+.|..+|....+. + ..+......+.
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999999876410 132 235777777778889999999999999886 3 22333333344
Q ss_pred HHHHh-c-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCC
Q 042941 320 LDIIR-T-GEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGP--DRSSYTALIHALFLNGK 395 (481)
Q Consensus 320 i~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 395 (481)
+.... . .+.+.++++...+. .+.+...+...+......|+.+.|+.+|++.......+ ....|...+.--.+.|+
T Consensus 478 lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 44332 2 46778888887776 45566777888888888999999999999998864322 34578888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 042941 396 LEEAHQYYMEMKEKQLLPEPKTDELLQDWS 425 (481)
Q Consensus 396 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 425 (481)
.+.+.++.+++.+. .|+......+.+-+
T Consensus 557 ~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 557 LNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999999999985 46655555555543
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=4.7e-10 Score=111.09 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred CHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHH
Q 042941 137 GIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIIS 216 (481)
Q Consensus 137 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 216 (481)
++.+|+.|..++.+.|++++|+..|++.....|.+...++.+...|. +.|++++|+..|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999876656677889999999999 999999999999999887443 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042941 217 CYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (481)
++...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 457889999999999999999999999999987554 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 042941 297 ARQAFDEMLQ 306 (481)
Q Consensus 297 a~~~~~~m~~ 306 (481)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=1.6e-09 Score=92.27 Aligned_cols=133 Identities=8% Similarity=-0.062 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
+..+......+...|++++|+..|+...+...+++...+..+..++...|++++|+..|++.....|.+...+..+...+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 34444444444455555555555554444332234444444444555555555555555443333333444455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDV-------VSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
. ..|++++|...+++..+.... +. ..|..+...+...|++++|...|+...+.
T Consensus 87 ~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 87 R-DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp H-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred H-HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 5 555555555555554443221 12 23444444555555555555555555543
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=3.5e-10 Score=99.60 Aligned_cols=229 Identities=14% Similarity=0.057 Sum_probs=146.9
Q ss_pred ccCChhHHHHHHHHHhcCC---C-CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CCCHHhHHHHH
Q 042941 77 KVRKFDTAWALIDEMRGGE---T-GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF------KF-AVGIEDFQGLL 145 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~---~-~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 145 (481)
..|++++|+.+|++..+.- . ..++....++..+...+...|++++|+..++++.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666666666554410 0 012334677888888888889999998888887754 21 22345677888
Q ss_pred HHHHcCCChhhHHHHHhhccCC--------CCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCcc-cHHh
Q 042941 146 SALCRYKNVQDAEHLMFCNKDV--------FPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR------GICY-DVVS 210 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~ 210 (481)
.+|...|++++|...+.+.... .+.....+..+...+. ..|++++|...+++.... +..| ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888999999988888764321 2334567778888888 899999999999887664 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHcCCChHHHHH------HHHHHHHcCCCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRM-------GIECD-RKVYNAVIHALAKGRLVKDAIS------LMKSMEEKGVAP 276 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~~~~a~~------~~~~~~~~~~~~ 276 (481)
+..+..++...|++++|...+++..+. ...+. ...+..+...+...+....+.. .++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 788888999999999999999888753 11222 2233333333333333222222 22211111 112
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888999999999999999887653
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=4.6e-09 Score=89.32 Aligned_cols=196 Identities=9% Similarity=0.015 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
.++..+......+...|++++|...|+...+....++ ...+..+...+...|++++|+..|++..+.+. .+...+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 80 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYI 80 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHH
Confidence 3567777788888888888888888888877632234 56666677888888888888888888877542 2456777
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCch-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc---HHhHH
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNT-------KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD---VVSFS 212 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~ 212 (481)
.+..++...|++++|...+++.....|.+. ..|..+...+. ..|++++|+..|+...+. .|+ ...+.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 157 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ-QAGNIEKAEENYKHATDV--TSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTS--SCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH-HhccHHHHHHHHHHHHhc--CCCcccHHHHH
Confidence 788888888888888888877555444455 44666777777 788888888888888765 343 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
.+..++...| ..+++.+...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 158 ~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 158 SLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6666665443 33444544443 23344443333 233456788888888888764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=8.1e-10 Score=97.19 Aligned_cols=158 Identities=13% Similarity=0.024 Sum_probs=121.2
Q ss_pred HhcCCHHHHHHHHHHHhhc-------CCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccC--------CCCCchHhHHHH
Q 042941 114 CAVHDVGRAINAFYAYKRF-------KFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKD--------VFPFNTKSFNII 178 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~l 178 (481)
...|++++|+..|++..+. +.+....++..+..++...|++++|...+++... ..+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777666542 2233466788899999999999999999977432 123456678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CC--cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQR-----GI--CYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM------G-IECDRK 244 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~-----g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 244 (481)
...+. ..|++++|...+++.... +. +....++..+...+...|++++|...+++..+. + .+....
T Consensus 92 ~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999 999999999999987764 11 224567888999999999999999999998775 1 122356
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 245 VYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++..+..+|...|++++|...+++..+.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999999988764
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=6.6e-09 Score=95.87 Aligned_cols=233 Identities=9% Similarity=0.018 Sum_probs=171.4
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----CC-CHHhH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGE--TGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF-----AV-GIEDF 141 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 141 (481)
.....+...|++++|...|++..+.. +..++....++..+...+...|+++.|+..+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34555678999999999999987642 111222356788899999999999999999998874311 11 24567
Q ss_pred HHHHHHHHcCCChhhHHHHHhhccC-----CC-CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCcccHHhH
Q 042941 142 QGLLSALCRYKNVQDAEHLMFCNKD-----VF-PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICYDVVSF 211 (481)
Q Consensus 142 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~ 211 (481)
+.+..+|...|++++|...|.+... +. +....+++.+...|. ..|++++|...+++.... +.+....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 8899999999999999999977422 11 112346777888888 999999999999988761 222236678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHcCCCC-ChhhHHH
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMG----IECDRKVYNAVIHALAKGRL---VKDAISLMKSMEEKGVAP-NVVTYNS 283 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 283 (481)
..+...+.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...++. .+..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 889999999999999999999988742 12223455666667777888 6677776665 22222 2345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+...|...|++++|...|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998754
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=5.4e-08 Score=84.62 Aligned_cols=250 Identities=10% Similarity=0.006 Sum_probs=159.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCH
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (481)
++-..-.|++..++.-...+ .........-.+.++|...|++... ....|....+..+. .|. ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la-~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYV-QFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHH-HHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHH-HHh-ccc--
Confidence 34455568888777733322 1111222333355777777776532 11223333333333 333 322
Q ss_pred HHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 042941 190 REAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-ECDRKVYNAVIHALAKGRLVKDAISLMKS 268 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (481)
|+..|++....+ .++..++..+..++...|++++|++++......|. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 34555666778888899999999999988876652 23667788888999999999999999999
Q ss_pred HHHcCCCC-----ChhhHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHc
Q 042941 269 MEEKGVAP-----NVVTYNSLIKPLCK--AR--KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKM 339 (481)
Q Consensus 269 ~~~~~~~~-----~~~~~~~li~~~~~--~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~ 339 (481)
|.+. .| +..+...+..+++. .| ++.+|..+|+++.+.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-------------------------------- 207 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-------------------------------- 207 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------------------------------
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------------------------
Confidence 9875 44 25556666666333 34 899999999998665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG---------NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
.|+..+-..++.++.+.|++++|.+.++.+.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 208 --~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~- 282 (310)
T 3mv2_B 208 --FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL- 282 (310)
T ss_dssp --SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-
T ss_pred --CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-
Confidence 2332222333337888899999999998765421 02356677566666666776 888889888874
Q ss_pred CCCCHhH
Q 042941 411 LLPEPKT 417 (481)
Q Consensus 411 ~~p~~~~ 417 (481)
.|+...
T Consensus 283 -~P~hp~ 288 (310)
T 3mv2_B 283 -DHEHAF 288 (310)
T ss_dssp -TCCCHH
T ss_pred -CCCChH
Confidence 455443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=2.3e-08 Score=76.67 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
.+..+...+. ..|++++|..+++.+...+.. +...+..+...+...|++++|...++.+.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYY-KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 4556666677 778888888888877665432 55667777777778888888888888777764 44566777777788
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887766432 5666777777888888888888888877654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=6.3e-09 Score=90.55 Aligned_cols=189 Identities=8% Similarity=-0.022 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC-HH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF-AVG-IE 139 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~ 139 (481)
.+...+-.....+.+.|++++|...|+.+.+.. |+ +....++..+...+...|++++|+..|+...+... .|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 356667777777778888888888888887752 22 11256777777788888888888888888876532 112 34
Q ss_pred hHHHHHHHHHc--------CCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhH
Q 042941 140 DFQGLLSALCR--------YKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSF 211 (481)
Q Consensus 140 ~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 211 (481)
.+..+..++.. .|++++|+..|+++....|.+......+..... ..+. -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~-~~~~------------------~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE-LRAK------------------LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-HHHH------------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH-HHHH------------------HHHHH
Confidence 55566666766 777777777777654433333333322111100 0000 00112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcC----------CChHHHHHHHHHHHHc
Q 042941 212 SCIISCYSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAVIHALAKG----------RLVKDAISLMKSMEEK 272 (481)
Q Consensus 212 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 272 (481)
..+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344556666666666666666666542110 223455555555544 6666666666666654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1.8e-08 Score=77.25 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC
Q 042941 144 LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN 223 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 223 (481)
+...+...|++++|..++++.....+.+...+..+...+. ..|++++|...++++...+.. +...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcC
Confidence 3333444444444444443322222233444444555555 555666666666555544322 34455555566666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666665543 334555556666666666666666666666543
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.6e-08 Score=84.54 Aligned_cols=112 Identities=8% Similarity=-0.051 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH----------------HHHHHHhcCCHHHHHHHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI----------------LIRRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~ 129 (481)
..+-.....+.+.|++++|...|+...+. ++.++..+.. +...+...|++++|+..|++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444455566677777777777776665 3333444444 444444555555555555554
Q ss_pred hhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 130 KRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 130 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
.+.. +-+...+..+..++...|++++|...|++.....|.+...+..+...|
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4432 123344444444444444444444444443333333444444444443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=5.3e-07 Score=78.43 Aligned_cols=209 Identities=10% Similarity=-0.007 Sum_probs=142.5
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
+-..-.|.+..++.-...+. |... .....-+.++++..|+.+.. ....|....+..+... ...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~-----~~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS-----KVTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS-----CCCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT
T ss_pred HHHHHhhHHHHHHHHHHhcC-----ccch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc
Confidence 33445788888887333322 2211 23444466888888877642 1223444344444333 3322
Q ss_pred ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-cccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 153 NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGI-CYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
|+..|+++....+++...+..+...+. ..|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677777755443556666678888888 89999999999999877654 225677888899999999999999999
Q ss_pred HHHHHcCCCC-----CHHHHHHHHHHH--H--cCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 232 DQMKRMGIEC-----DRKVYNAVIHAL--A--KGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 232 ~~~~~~~~~~-----~~~~~~~li~~~--~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+.|.+. .| +..+...+..++ . ..+++..|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 999886 45 355555566553 2 234899999999999775 3443344455558899999999999999
Q ss_pred HHHH
Q 042941 303 EMLQ 306 (481)
Q Consensus 303 ~m~~ 306 (481)
.+.+
T Consensus 236 ~l~~ 239 (310)
T 3mv2_B 236 LLLS 239 (310)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 7654
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=5.8e-08 Score=81.07 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=81.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhH
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE 328 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 328 (481)
+..+|.+.|++++|...|++..+..+. +...+..+...|...|++++|...|++..+.. |+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~---------------- 120 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--AD---------------- 120 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----------------
Confidence 778888889999999999888887554 67788888888888999999999998887753 22
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 329 VFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQ--FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+...+..+...|...|+ ...+...+..... ..|....+.....++...|++++|+..|++.
T Consensus 121 ---------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 121 ---------------NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 23344444444433322 2233333333321 1122223333444555667777777777777
Q ss_pred HHCCCCCCHhHHH
Q 042941 407 KEKQLLPEPKTDE 419 (481)
Q Consensus 407 ~~~~~~p~~~~~~ 419 (481)
.+ +.|+.....
T Consensus 184 l~--l~P~~~~~~ 194 (208)
T 3urz_A 184 IL--RFPSTEAQK 194 (208)
T ss_dssp TT--TSCCHHHHH
T ss_pred HH--hCCCHHHHH
Confidence 65 456654433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.95 E-value=1.1e-07 Score=82.69 Aligned_cols=187 Identities=10% Similarity=-0.026 Sum_probs=113.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---HHhHHHHHHHHHcCCChhhHHHHHhhccCCCC---CchHh
Q 042941 101 VTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG---IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFP---FNTKS 174 (481)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 174 (481)
.++..+..+...+...|++++|+..|+.+.+.... + ...+..+..++.+.|++++|...|++.....| .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34666666777777777777777777777764321 2 44556666667777777777777766433222 22344
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 175 FNIILNGWCNI--------IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 175 ~~~l~~~~~~~--------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
+..+..++. . .|++++|...|+++...... +......+. .+..+... ....+
T Consensus 92 ~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 555555555 5 66666666666666654221 111111110 00000000 01124
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCC
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKGVAP--NVVTYNSLIKPLCKA----------RKLDEARQAFDEMLQRG 308 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~ 308 (481)
..+..+|.+.|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+.+.+..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 567788999999999999999998864332 234567777778765 88999999999988764
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=4.6e-07 Score=79.62 Aligned_cols=222 Identities=5% Similarity=-0.072 Sum_probs=162.6
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCCHHhHHHHHHHH----HcC
Q 042941 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH--DVGRAINAFYAYKRFKFAVGIEDFQGLLSAL----CRY 151 (481)
Q Consensus 78 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 151 (481)
....++|+++++.++.. ++....+|+.--..+...| ++++++..++.+...+.+ +..+|+.--..+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 46 EEYSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33446888888888876 4444667777777777777 888888888888876533 445555533333 334
Q ss_pred ---CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC---
Q 042941 152 ---KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR--EAERVWMEMSQRGICYDVVSFSCIISCYSKARN--- 223 (481)
Q Consensus 152 ---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--- 223 (481)
+++++++.+++.+....|.+..+|+.-...+. ..+.++ ++++.++.+.+..+. |...|+.-...+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 67888888888876667778888888777777 778777 888888888887655 77777766666666666
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHH
Q 042941 224 ---LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKD-AISLMKSMEEKG--VAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 224 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
++++++.++.+.... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888899888888875 5688888888888888877443 445666554432 123677888888899999999999
Q ss_pred HHHHHHHHHC
Q 042941 298 RQAFDEMLQR 307 (481)
Q Consensus 298 ~~~~~~m~~~ 307 (481)
.++++.+.+.
T Consensus 278 ~~~~~~l~~~ 287 (306)
T 3dra_A 278 RTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998763
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.94 E-value=2.8e-08 Score=87.92 Aligned_cols=193 Identities=9% Similarity=-0.019 Sum_probs=110.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhc----CCCCC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCC----CC--chHhHHHHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRF----KFAVG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVF----PF--NTKSFNIILN 180 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~ 180 (481)
.|...|++++|...|.+..+. +.++. ..+|+.+..+|...|++++|+..+++..... .+ ...+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777777666542 21111 3456667777777777777777665532110 00 1345666667
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCc----cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHH
Q 042941 181 GWCNII-GSSREAERVWMEMSQRGIC----YD-VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYNA 248 (481)
Q Consensus 181 ~~~~~~-~~~~~a~~~~~~~~~~g~~----~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ 248 (481)
.|. .. |++++|+..|++....... +. ..++..+...+.+.|++++|...|+...+....... ..|..
T Consensus 126 ~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 126 ILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 776 64 8888888777776543111 01 345667777777888888888888877765322111 14566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC-C---hhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKGVAP-N---VVTYNSLIKPLC--KARKLDEARQAFDEML 305 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 305 (481)
+..++...|++++|...|++..+..+.. + ...+..++.+|. ..+++++|...|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6667777788888888887776532210 1 112333444443 2355666666665543
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=1e-08 Score=80.65 Aligned_cols=140 Identities=7% Similarity=-0.056 Sum_probs=69.6
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKV 227 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a 227 (481)
+...|++++|+..+.......|.+...+..+...|. +.|++++|++.|++..+.... +..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 344455555555555544333333444445555555 556666666655555554322 444555555555556666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhc
Q 042941 228 LRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL-MKSMEEKGVAPNVVTYNSLIKPLCKA 291 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 291 (481)
...|+...+.. +-+..++..+...|.+.|++++|... +++..+..+. +...|......+...
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 66665555543 23445555555555555555444333 3455444322 334444443333333
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=6.3e-08 Score=96.31 Aligned_cols=172 Identities=8% Similarity=-0.040 Sum_probs=138.3
Q ss_pred hcCCHHHHHHHHHHHH--------hcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 185 IIGSSREAERVWMEMS--------QRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
..|++++|++.+++.. ... +.+...+..+..++...|++++|...|++..+.+ +.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 7899999999999987 332 2245677888889999999999999999998874 45778889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHH
Q 042941 257 RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESM 336 (481)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 336 (481)
|++++|...|++..+.... +...|..+..+|.+.|++++ ...|++..+.+
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---------------------------- 530 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN---------------------------- 530 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC----------------------------
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC----------------------------
Confidence 9999999999999887554 67788888999999999999 99998887753
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042941 337 RKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGK 395 (481)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 395 (481)
+.+...+..+..++.+.|++++|.+.|++..+.. |+ ...|..+..++...|+
T Consensus 531 -----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 -----DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred -----CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 3356678888999999999999999999887753 44 5577777777766555
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=2.1e-08 Score=88.76 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCC-C-cccHHHHHHHHHHHHhcCCHHH
Q 042941 44 DWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGP-S-LVTKQTLLILIRRYCAVHDVGR 121 (481)
Q Consensus 44 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~-~~~~~~~~~li~~~~~~~~~~~ 121 (481)
++++|...+... ...|...|++++|.+.|++..+..... + .....+|+.+...|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 367777777665 456778999999999998875531000 1 1125688899999999999999
Q ss_pred HHHHHHHHhhcCCC-CC----HHhHHHHHHHHHcC-CChhhHHHHHhhccCCCCCc------hHhHHHHHHHHHHhcCCH
Q 042941 122 AINAFYAYKRFKFA-VG----IEDFQGLLSALCRY-KNVQDAEHLMFCNKDVFPFN------TKSFNIILNGWCNIIGSS 189 (481)
Q Consensus 122 a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 189 (481)
|+..|++..+.... .+ ..+++.+..+|... |++++|+..|++.....+.+ ..+++.+...+. ..|++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~ 174 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA-LDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HhCCH
Confidence 99999988753211 11 45788899999996 99999999998743221111 356888889999 99999
Q ss_pred HHHHHHHHHHHhcCCcccH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--c
Q 042941 190 REAERVWMEMSQRGICYDV------VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYNAVIHALA--K 255 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~ 255 (481)
++|+..|++.......... ..|..+..++...|++++|...|++..+. .|+. ..+..++..+. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999999886543222 15677788899999999999999998764 2321 23444566664 4
Q ss_pred CCChHHHHHHHHHHHH
Q 042941 256 GRLVKDAISLMKSMEE 271 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~ 271 (481)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5678888888877654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.2e-08 Score=82.85 Aligned_cols=160 Identities=9% Similarity=-0.023 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC
Q 042941 108 ILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG 187 (481)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (481)
.....+...|++++|+..|+...+.. +.+...+..+..++...|++++|+..+++.....| +...+...........+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhc
Confidence 33444455555555555555544432 12344455555555555555555555555433222 33222221111110111
Q ss_pred CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChHHHHHHH
Q 042941 188 SSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC-DRKVYNAVIHALAKGRLVKDAISLM 266 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 266 (481)
....|...++........ +...+..+..++...|++++|...|+.+.+....+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222355566665554222 45566666666677777777777777666653211 2445666666677777777777666
Q ss_pred HHHH
Q 042941 267 KSME 270 (481)
Q Consensus 267 ~~~~ 270 (481)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=5.3e-08 Score=78.90 Aligned_cols=158 Identities=8% Similarity=-0.030 Sum_probs=75.9
Q ss_pred HHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-HHhc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-YSKA 221 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~ 221 (481)
.+...+...|++++|...|++.....|.+...+..+...+. ..|++++|...++...... |+...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34445555555556655555544434444555555555555 5556666655555544332 122222111111 1111
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-NVVTYNSLIKPLCKARKLDEARQA 300 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 300 (481)
+...++...++...+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11223455555555442 2244555555555555566666666655555543322 233455555555555555555555
Q ss_pred HHHH
Q 042941 301 FDEM 304 (481)
Q Consensus 301 ~~~m 304 (481)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.1e-08 Score=101.63 Aligned_cols=171 Identities=8% Similarity=-0.041 Sum_probs=96.5
Q ss_pred HhcCCHHHHHHHHHHHh--------hcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh
Q 042941 114 CAVHDVGRAINAFYAYK--------RFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI 185 (481)
Q Consensus 114 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (481)
...|++++|+..+++.. +.. +.+...+..+..++...|++++|+..|++.....+.+...+..+...+. .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-L 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-H
Confidence 44566666666666655 322 2234455555566666666666666665544434445556666666666 6
Q ss_pred cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 186 IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
.|++++|+..|++..+.... +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666555322 34455556666666666666 66666666553 33555666666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 266 MKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
|++..+.+.. +...+..+..++..
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHc
Confidence 6666554222 23444445555444
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=1.8e-07 Score=82.47 Aligned_cols=164 Identities=10% Similarity=-0.054 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHH-HHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNI-ILNG 181 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~ 181 (481)
...+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...++++....| +...... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHH
Confidence 5566667777777777777777777777654 23556667777777777777777777776544333 3322222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChH
Q 042941 182 WCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIE-CDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 260 (481)
+. ..++.+.|...+++....... +...+..+...+...|++++|...|..+.+.... .+...+..+...+...|+.+
T Consensus 195 l~-~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LL-XQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HH-HHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HH-hhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 34 555666666666666655332 4556666666777777777777777776665311 11455666666666667666
Q ss_pred HHHHHHHHHH
Q 042941 261 DAISLMKSME 270 (481)
Q Consensus 261 ~a~~~~~~~~ 270 (481)
+|...|++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=4.6e-06 Score=79.18 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHhh-cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCC-hhHHHHHHHHHhcCCCCCCcccHHHH
Q 042941 29 VSSELVSEVLSWVR-NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRK-FDTAWALIDEMRGGETGPSLVTKQTL 106 (481)
Q Consensus 29 ~~~~~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~~ 106 (481)
-...++...+..+. +..+.+..+|+...... |++..|...+....+.+. .+....+|+..... +.+++.+...|
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~-vg~d~~s~~iW 88 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ-FENYWDSYGLY 88 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHH-STTCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-cCCCcccHHHH
Confidence 34455666666664 78899999999997543 799999999999888774 35677788876653 23344457888
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHhhc
Q 042941 107 LILIRRYC----AVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 107 ~~li~~~~----~~~~~~~a~~~~~~~~~~ 132 (481)
...+..+. .+++.+.+..+|++.+..
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 88877654 346788999999999873
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=3.1e-07 Score=77.66 Aligned_cols=189 Identities=12% Similarity=-0.006 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CCH-Hh
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VGI-ED 140 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~ 140 (481)
+...+..+...+.+.|++++|...|+.+.+. .|+ +....++..+..++...|++++|+..|+++.+.... +.. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3445556666677778888888888777764 122 122456667777777778888888888777764322 111 12
Q ss_pred HHHHHHHHH------------------cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 141 FQGLLSALC------------------RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 141 ~~~ll~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
+..+..++. ..|++++|...|+++....|.+...+........ . ...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~-~----------~~~~~-- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF-L----------KDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-H----------HHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH-H----------HHHHH--
Confidence 333333333 2456666666666655544444333322211110 0 00000
Q ss_pred CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 203 GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD---RKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 203 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
.....+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|.+.++.+...++
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011245677888999999999999988763 222 24677788899999999999999998887644
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=2.8e-07 Score=77.99 Aligned_cols=186 Identities=8% Similarity=-0.075 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC-HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchH---hHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG-IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTK---SFNI 177 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 177 (481)
+..+..+...+...|++++|+..|+.+.+.... |. ...+..+..++.+.|++++|+..|+++....|.+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 566777788889999999999999999875422 21 356777889999999999999999886544333332 3444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042941 178 ILNGWCNI------------------IGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI 239 (481)
Q Consensus 178 l~~~~~~~------------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 239 (481)
+..++. . .|++++|...|+.+.+..+. +...+...... ..+...+
T Consensus 84 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNM-ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHH-HHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHH-hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 444444 3 34556666666665554211 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN--VVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|...++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113466788999999999999999988743311 2467888999999999999999999998875
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.2e-08 Score=80.25 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 042941 111 RRYCAVHDVGRAINAFYAY 129 (481)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~ 129 (481)
..|...|++++|+..|++.
T Consensus 39 ~~y~~~~~~~~A~~~~~~a 57 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTY 57 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=9.9e-08 Score=93.13 Aligned_cols=152 Identities=10% Similarity=-0.073 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE 158 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 158 (481)
|++++|.+.|++..+. ++.+...+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5556666666665554 33335556666666666666666666666665543 223445555555555555555555
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKA---RNLHKVLRLFDQMK 235 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~ 235 (481)
..+++.....+.+...+..+...+. ..|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++..
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5555533333334445555555555 555555555555555444221 334444455555555 55555555555555
Q ss_pred Hc
Q 042941 236 RM 237 (481)
Q Consensus 236 ~~ 237 (481)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=1.5e-07 Score=91.88 Aligned_cols=155 Identities=10% Similarity=0.000 Sum_probs=100.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHH
Q 042941 116 VHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERV 195 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 195 (481)
.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+. ..|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 467778888887776643 2346677777778888888888888887766555666777777777777 78888888888
Q ss_pred HHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChHHHHHHHHHHHHc
Q 042941 196 WMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG---RLVKDAISLMKSMEEK 272 (481)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 272 (481)
+++..+.... +...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|...+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8877766432 45677777777888888888888888777764 34566777777777777 7888888888877776
Q ss_pred CC
Q 042941 273 GV 274 (481)
Q Consensus 273 ~~ 274 (481)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=9.4e-08 Score=84.23 Aligned_cols=167 Identities=13% Similarity=-0.005 Sum_probs=133.3
Q ss_pred CCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHH-
Q 042941 135 AVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSC- 213 (481)
Q Consensus 135 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~- 213 (481)
+.+...+..+...+...|++++|...|++.....|.+...+..+...+. ..|++++|...++..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345667778888999999999999999876666778888999999999 999999999999988766 344433222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP-NVVTYNSLIKPLCKAR 292 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 292 (481)
....+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+..+.. +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667777888899998888875 5678888999999999999999999999998875432 2667889999999999
Q ss_pred CHHHHHHHHHHHH
Q 042941 293 KLDEARQAFDEML 305 (481)
Q Consensus 293 ~~~~a~~~~~~m~ 305 (481)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998888754
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=1.1e-06 Score=73.56 Aligned_cols=174 Identities=10% Similarity=-0.053 Sum_probs=96.8
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC----CHHHHH
Q 042941 48 AFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH----DVGRAI 123 (481)
Q Consensus 48 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~----~~~~a~ 123 (481)
|++.|+..... -++.++..+...+...+++++|...|+...+.| + +.++..+...|.. + ++++|+
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~---~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---D---GDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 45555555432 256666666666666777777777777766553 2 5555666666655 4 677777
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHc----CCChhhHHHHHhhccCCCCC--chHhHHHHHHHHHHh----cCCHHHHH
Q 042941 124 NAFYAYKRFKFAVGIEDFQGLLSALCR----YKNVQDAEHLMFCNKDVFPF--NTKSFNIILNGWCNI----IGSSREAE 193 (481)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----~~~~~~a~ 193 (481)
..|++..+.+ ++..+..|...|.. .+++++|..+|++.....+. ....+..+...|. . .+++++|.
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA-SGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH-HTSSSSCCHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 7777665543 44555556666655 55666666666654332221 1455555555555 4 45566666
Q ss_pred HHHHHHHhcCCcccHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 042941 194 RVWMEMSQRGICYDVVSFSCIISCYSKA-R-----NLHKVLRLFDQMKRMG 238 (481)
Q Consensus 194 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 238 (481)
..|++..+.+ .+...+..|...|... | ++++|...|+...+.|
T Consensus 150 ~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6666655541 1222344444444332 2 5566666666555554
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=4.9e-06 Score=73.10 Aligned_cols=216 Identities=9% Similarity=0.044 Sum_probs=113.9
Q ss_pred hHHHHHhhccCCCCCchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCcccHHhHHHHHHHH----Hhc---CCHHH
Q 042941 156 DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG--SSREAERVWMEMSQRGICYDVVSFSCIISCY----SKA---RNLHK 226 (481)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~----~~~---~~~~~ 226 (481)
+|+.+++.+....|.+...|+.--..+. ..+ ++++++..++.+...+++ +..+|+.-...+ ... +++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 3444444433333334444444444444 444 555555555555554333 222333222222 222 45666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC------HHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK--DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK------LDEAR 298 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~a~ 298 (481)
++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.++++.+..+. |...|+.-...+...++ +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666653 445566665555555566655 666666666665544 55555554444444443 45555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCC--
Q 042941 299 QAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF-GNVFKVWNEISENG-- 375 (481)
Q Consensus 299 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-- 375 (481)
+.+++++... +-|...|+-+-..+.+.|+. +.+..+..++.+.+
T Consensus 207 ~~~~~aI~~~---------------------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 207 NYVKDKIVKC---------------------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp HHHHHHHHHC---------------------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred HHHHHHHHhC---------------------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 5555554432 23444555555555555553 33444555544322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 376 NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
-..+...+..+...|.+.|+.++|.++|+.+.+
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 123666777777777778888888888888765
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=7.1e-07 Score=74.64 Aligned_cols=176 Identities=9% Similarity=-0.027 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC----ChhhHH
Q 042941 83 TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK----NVQDAE 158 (481)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~ 158 (481)
+|...|+...+.| + +.++..+...+...+++++|+..|++..+.| ++..+..|...|.. + ++++|.
T Consensus 4 eA~~~~~~aa~~g---~---~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---D---RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---C---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 4566666666553 4 6677777777777888888888888877654 45566666666666 5 677777
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCc-ccHHhHHHHHHHHHh----cCCHHHHHH
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSREAERVWMEMSQRGIC-YDVVSFSCIISCYSK----ARNLHKVLR 229 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~----~~~~~~a~~ 229 (481)
.+|++... +.+...+..+...|. . .+++++|...|++..+.|.. .+...+..|...|.. .+++++|..
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 77766422 124455555555555 4 56677777777666665432 014455556666665 556666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcC-C-----ChHHHHHHHHHHHHcC
Q 042941 230 LFDQMKRMGIECDRKVYNAVIHALAKG-R-----LVKDAISLMKSMEEKG 273 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 273 (481)
.|+...+. ..+...+..+..+|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666654 12333455555555432 2 5666666666665554
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=7.6e-06 Score=72.70 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=162.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVH-DVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+.+-....+.+..++|+++++.+... ++....+|+.--..+...| .+++++..++.+...+. -+..+|+.-..+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wl 132 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 33333344555667899999998886 4445777877777777777 58999999999987663 366777776655
Q ss_pred HHcC-C-ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCcccHHhHHHHHHH
Q 042941 148 LCRY-K-NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSR--------EAERVWMEMSQRGICYDVVSFSCIISC 217 (481)
Q Consensus 148 ~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~a~~~~~~~~~~g~~~~~~~~~~ll~~ 217 (481)
+... + ++++++.+++.+....+.+...|+.-...+. +.+.++ ++++.++++.+..+. |...|+.....
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~-~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYS-HFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHH-HHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5555 5 7888888888877777778888877665555 555555 888888888887554 77788877777
Q ss_pred HHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh--------------------HHHHHHHHHHH
Q 042941 218 YSKARN-------LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV--------------------KDAISLMKSME 270 (481)
Q Consensus 218 ~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~ 270 (481)
+.+.+. ++++++.++...... +-|...|+-+-..+.+.|.. ........++.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 777775 688888888888775 55788887777667666653 22222222222
Q ss_pred HcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 271 EKG-----VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 271 ~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 221 1347777888899999999999999999998754
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=1.9e-06 Score=76.20 Aligned_cols=135 Identities=8% Similarity=0.020 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHH---HHHHHHHHHhccCChhHHHHHHHHHhcCC
Q 042941 19 RNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTR---EYHTMIAILGKVRKFDTAWALIDEMRGGE 95 (481)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 95 (481)
...+......|+..++..+...+.-+.+. ++.. .. ..+.. .+...+..+...|++++|..++++..+..
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~~---~~~~----~~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPIIH---FYEV----LI-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTHH---HHHT----TT-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHHH---HhCC----CC-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 34444444567777777777777544432 1211 11 12222 23334566777888888888888877642
Q ss_pred CCCCcccHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----HHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 96 TGPSLVTKQ----TLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG----IEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 96 ~~p~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+...... .+..+...+...|++++|+..++.+...... ++ ..+++.+..+|...|++++|...|++
T Consensus 106 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 106 --EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 2223445555566777777777776653221 11 11344455555555555555554443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=9.8e-07 Score=78.58 Aligned_cols=197 Identities=9% Similarity=-0.070 Sum_probs=126.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
++.++|.++++...+... .+ .+...++++.|...|... ...|...|++++|
T Consensus 5 ~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a------------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA------------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH------------------HHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH------------------HHHHHHcCCHHHH
Confidence 455677777776643221 00 011135666666666543 4456678888888
Q ss_pred HHHHHHHhhcCC----CC-CHHhHHHHHHHHHcCCChhhHHHHHhhccC----CCCC--chHhHHHHHHHHHHhcCCHHH
Q 042941 123 INAFYAYKRFKF----AV-GIEDFQGLLSALCRYKNVQDAEHLMFCNKD----VFPF--NTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 123 ~~~~~~~~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~~ 191 (481)
...|.+..+... .+ -..+|+.+..+|...|++++|+..|++... ...+ ...+++.+...|. . |++++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~ 133 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHH
Confidence 888887764321 11 134677788888888999988888876321 1111 2346667777777 6 88888
Q ss_pred HHHHHHHHHhcCCc----c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChHH
Q 042941 192 AERVWMEMSQRGIC----Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIECD-RKVYNAVIHALAKGRLVKD 261 (481)
Q Consensus 192 a~~~~~~~~~~g~~----~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~ 261 (481)
|+..|++....... + ...++..+...+.+.|++++|+..|++.... +..+. ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 88888876553111 1 1356777788888888888888888887653 11111 2255666677777788888
Q ss_pred HHHHHHHHH
Q 042941 262 AISLMKSME 270 (481)
Q Consensus 262 a~~~~~~~~ 270 (481)
|...|++..
T Consensus 214 A~~~~~~al 222 (307)
T 2ifu_A 214 AQKCVRESY 222 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888877
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=2.9e-06 Score=74.96 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHh---c-CCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQ---R-GICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IEC-D 242 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~---~-g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 242 (481)
+++.+...|. ..|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+.. ... -
T Consensus 157 ~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4555555555 56666666666665542 1 1111 11355666666666666666666666654321 111 1
Q ss_pred HHHHHHHHHHHHcCCChHHH-HHHHHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDA-ISLMKSME 270 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 270 (481)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44566666666677777666 55555544
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=2.1e-06 Score=71.77 Aligned_cols=123 Identities=9% Similarity=-0.105 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
...+. ..|++++|...|++.. .|+...+..+..++...|++++|...|+...+.. +.+...+..+..+|...|+
T Consensus 13 g~~~~-~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAA-DKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHH-HTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 33444 4555555555554432 2344455555555555555555555555555442 3344455555555555555
Q ss_pred hHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 259 VKDAISLMKSMEEKGVAP---------------NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+++|...|++..+..... ....+..+..+|...|++++|...|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555432110 1134455555555566666666666655554
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=1e-05 Score=71.46 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=98.7
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCC--Cch----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc----HHhHHH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFP--FNT----KSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YD----VVSFSC 213 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ 213 (481)
+..+...|++++|..+++......+ |+. ..+..+...+. ..+++++|...++........ ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4455556666666666655332211 111 12223444455 667778888877777663222 12 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-hhhHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRM-----GIECD-RKVYNAVIHALAKGRLVKDAISLMKSMEEK----GVAPN-VVTYN 282 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 282 (481)
+..+|...|++++|...|+.+.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777888888888888888777631 11111 236677788888888888888888776543 11111 45677
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 042941 283 SLIKPLCKARK-LDEARQAFDEMLQ 306 (481)
Q Consensus 283 ~li~~~~~~g~-~~~a~~~~~~m~~ 306 (481)
.+..+|...|+ +++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77778888884 5888888877643
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.63 E-value=2.2e-06 Score=71.57 Aligned_cols=127 Identities=9% Similarity=-0.059 Sum_probs=79.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+..+...+...|++++|...|++.. .|+ ..++..+...+...|++++|+..|+...+.. +.+...+..+..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 4445555666677777777776653 233 5666666777777777777777777666543 2345566666666
Q ss_pred HHcCCChhhHHHHHhhccCCCCCch----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNT----------------KSFNIILNGWCNIIGSSREAERVWMEMSQRG 203 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g 203 (481)
+...|++++|...|++.....+.+. ..+..+...+. ..|++++|...|+......
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH-HccCHHHHHHHHHHHHHcC
Confidence 6667777777666665433222222 55666666666 6777777777777766653
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=7e-07 Score=79.54 Aligned_cols=191 Identities=6% Similarity=-0.070 Sum_probs=130.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CC--CHHh
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGET--GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKF---AV--GIED 140 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 140 (481)
|+.....|...|++++|.+.|.+..+... ........+|..+...|...|++++|+..|++..+... .+ ...+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33345677888999999999988755310 00111245788888999999999999999998764311 11 2356
Q ss_pred HHHHHHHHHcCCChhhHHHHHhhccCCCC------CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCccc-HH
Q 042941 141 FQGLLSALCRYKNVQDAEHLMFCNKDVFP------FNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICYD-VV 209 (481)
Q Consensus 141 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~ 209 (481)
+..+..+|.. |++++|+..|++.....+ ....+++.+...+. ..|++++|+..|++.... +..+. ..
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 7788888988 999999999987432111 12457888888999 999999999999988763 22222 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCChHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDR------KVYNAVIHALAKGRLVKDAIS 264 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 264 (481)
.+..+..++...|++++|...|++.. . .|+. .....++..+ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 56667777888899999999999988 4 2321 1233444444 4566555444
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=3.1e-06 Score=67.32 Aligned_cols=129 Identities=7% Similarity=-0.011 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHA 252 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 252 (481)
..+..+...+. ..|++++|...|+........ +..++..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYF-KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44556666677 778888888888877765332 56677777778888888888888888877764 4466777778888
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 042941 253 LAKGRLVKDAISLMKSMEEKGVAPNVVTYNS--LIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 305 (481)
+...|++++|...|++..+.... +...+.. ....+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888776433 3444433 3333666788888888777653
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.4e-06 Score=74.86 Aligned_cols=187 Identities=6% Similarity=-0.123 Sum_probs=92.8
Q ss_pred ccCChhHHHHHHHHHhcCCCCCCcccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhcCCCCC------------
Q 042941 77 KVRKFDTAWALIDEMRGGETGPSLVTKQTLLIL-------IRRYCAVHDVGRAINAFYAYKRFKFAVG------------ 137 (481)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~------------ 137 (481)
..++...|.+.|.+..+. ++.....|..+ ...+...++..+++..+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 467777888888887776 44446677666 3344444444444444443332 1111
Q ss_pred ----------HHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc
Q 042941 138 ----------IEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD 207 (481)
Q Consensus 138 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 207 (481)
......+..++...|++++|.++|..+....|-+. ....+...+. +.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccC-Ccc
Confidence 11122344555556666666666655544333222 3333333444 5666666666665332221 110
Q ss_pred --HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 208 --VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 208 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12344455556666666666666665553221132 223344445555566666666666665554
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=1.8e-06 Score=67.36 Aligned_cols=101 Identities=10% Similarity=0.022 Sum_probs=68.4
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNA 248 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 248 (481)
|.+...+..+...+. +.|++++|...|+......+. +...|..+..+|...|++++|...|+...+.. +.+...|..
T Consensus 33 p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 344555666666666 677777777777777665433 55666677777777777777777777777654 345566667
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+..+|...|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777665
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=1.9e-06 Score=65.07 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042941 177 IILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG 256 (481)
Q Consensus 177 ~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (481)
.....+. +.|++++|+..|++..+.... +...|..+..++.+.|++++|+..++...+.+ +.+...|..+..++...
T Consensus 18 ~~G~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 18 NKGNEYF-KKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 3333444 444444444444444333211 33344444444444444444444444444432 22333444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 042941 257 RLVKDAISLMKSMEE 271 (481)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (481)
|++++|...|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.1e-05 Score=71.31 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC---ccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHH
Q 042941 178 ILNGWCNIIGSSREAERVWMEMSQRGI---CYD--VVSFSCIISCYSKARNLHKVLRLFDQMKR---M-GIEC--DRKVY 246 (481)
Q Consensus 178 l~~~~~~~~~~~~~a~~~~~~~~~~g~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~ 246 (481)
+...+. ..|++++|...+++...... .+. ..+++.+...|...|++++|...|++..+ . +..+ ...++
T Consensus 121 ~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 121 VAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 444455 67788888888877664321 111 44788888889999999999999988763 2 1111 12578
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC----CCC-ChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEKG----VAP-NVVTYNSLIKPLCKARKLDEA-RQAFDEML 305 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 305 (481)
..+..+|...|++++|...+++..+.. ... -..+|..+...|...|++++| ...+++..
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 888888999999999999998876431 111 155677888888899999988 77677654
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=3.2e-07 Score=82.76 Aligned_cols=152 Identities=10% Similarity=-0.010 Sum_probs=115.4
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--------------HHhHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--------------VVSFSCIISC 217 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~ 217 (481)
+++++|...++......+.+...+..+...+. +.|++++|...|++......... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444322212235567778888888 89999999999998887643322 4788888899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 218 YSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 218 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+.|++++|+..++...+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 557888889999999999999999999999887544 667788888888888888888
Q ss_pred -HHHHHHHHH
Q 042941 298 -RQAFDEMLQ 306 (481)
Q Consensus 298 -~~~~~~m~~ 306 (481)
...|+.|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666543
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=1.5e-06 Score=69.24 Aligned_cols=127 Identities=12% Similarity=-0.036 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHH
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCN 184 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 184 (481)
.+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~- 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM- 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-
Confidence 33344444444444444444444444332 1233444444444444555555555444433323334444555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhH--HHHHHHHHhcCCHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSF--SCIISCYSKARNLHKVLRLFDQM 234 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~ 234 (481)
..|++++|...|++....... +...+ ......+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555555444221 22222 22222244455555555555544
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=9.1e-07 Score=66.90 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHH
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWC 183 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (481)
..+......+.+.|++++|+..|++..+.+ +.++..|..+..++.+.|++++|+..|++.....|.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 334444444444444444444444444332 1233444444444444444444444444433223334444444444444
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 042941 184 NIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~ 202 (481)
..|++++|...|+...+.
T Consensus 93 -~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 -AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp -HTTCHHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHHHHH
Confidence 455555555555544443
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=4.9e-06 Score=62.33 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHAL 253 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (481)
.+..+...+. ..|++++|...++++..... .+..++..+...+...|++++|...++.+.+.. +.+..++..+..++
T Consensus 11 ~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYY-KQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444444 45555555555555444321 133444444555555555555555555554432 23344444555555
Q ss_pred HcCCChHHHHHHHHHHHHc
Q 042941 254 AKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~ 272 (481)
...|++++|...|+++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=1.4e-06 Score=72.09 Aligned_cols=156 Identities=11% Similarity=-0.041 Sum_probs=86.1
Q ss_pred cCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCc-ccHHhHHHHHHHHHhcCCH
Q 042941 150 RYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR----GIC-YDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~ 224 (481)
..|++++|.++++.+..........+..+...+. ..|++++|...+++.... +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3455555555322222211224455555666666 666666666666655441 111 1234566666677777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--hhhHHHHHHHHHhcCC
Q 042941 225 HKVLRLFDQMKRM----GIEC--DRKVYNAVIHALAKGRLVKDAISLMKSMEEKG---VAPN--VVTYNSLIKPLCKARK 293 (481)
Q Consensus 225 ~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~ 293 (481)
++|...+++..+. +..+ ....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665543 1111 13345666677777777777777777665321 0111 2234566667777888
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776543
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=1.7e-06 Score=65.84 Aligned_cols=96 Identities=9% Similarity=-0.059 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (481)
+...+..+...+.+.|++++|...|+...+. ++.+..++..+...+...|++++|+..+++..+.. +.+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4555666666666666666666666666554 22235555556666666666666666666655543 223444555
Q ss_pred HHHHHHcCCChhhHHHHHhhc
Q 042941 144 LLSALCRYKNVQDAEHLMFCN 164 (481)
Q Consensus 144 ll~~~~~~~~~~~a~~~~~~~ 164 (481)
+..++...|++++|...|++.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555555555543
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=5.7e-07 Score=78.88 Aligned_cols=194 Identities=8% Similarity=-0.038 Sum_probs=111.3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
+...+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455666666777777777777777776653 335666777777777777777777777777665433 5566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQRGISPTI-RTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVF 365 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 365 (481)
+|...|++++|...|+...+.+ |+. ..+...+....+.... ..+........+.+......+.. + ..|++++|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKK-KRWNSIEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 7777777777777777665432 100 0000111111111111 11222223333444444433322 2 368888998
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 042941 366 KVWNEISENGNGPDRS-SYTALIHALFLN-GKLEEAHQYYMEMKEK 409 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 409 (481)
+.++...+. .|+.. ....+...+.+. +.+++|.++|.++.+.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888877764 34433 334444444444 6788899999887653
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=3e-06 Score=64.18 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=70.7
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+...+..+...+. ..|++++|...++........ +...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3445555556666 666666666666666554322 45556666666666666777766666666553 33455666666
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 251 HALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
.++...|++++|...|++..+.... +...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666667777777766666655332 44455555555555544
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=5.6e-07 Score=78.95 Aligned_cols=194 Identities=9% Similarity=-0.032 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+...+.. +.+...|..+..++.+.|++++|...+++.....+.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5667777778888888888888888887654 236677777888888888888888888886666666777888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHH
Q 042941 183 CNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDA 262 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (481)
. ..|++++|...|+.....+.. +...+...+....+ ...... +........+.+......+.. + ..|++++|
T Consensus 83 ~-~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 83 L-EMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp H-HTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred H-HcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 8 888888888888877664211 10111111111111 111111 112222333444444333322 2 25778888
Q ss_pred HHHHHHHHHcCCCCChhh-HHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 042941 263 ISLMKSMEEKGVAPNVVT-YNSLIKPLCKA-RKLDEARQAFDEMLQR 307 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~-~~~li~~~~~~-g~~~~a~~~~~~m~~~ 307 (481)
.+.++...+. .|+... ...+-..+.+. +.+++|.++|.+..+.
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888777654 333332 23333333333 5677888888877553
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=3.3e-06 Score=64.21 Aligned_cols=100 Identities=8% Similarity=-0.081 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 101 VTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346666667777777777777777777766543 2245556666666666666666666666544333445555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 042941 181 GWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
.+. ..|++++|...|++....
T Consensus 93 ~~~-~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALE-AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHH-HHhhHHHHHHHHHHHHHh
Confidence 666 666666666666665554
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=0.00092 Score=63.39 Aligned_cols=343 Identities=6% Similarity=-0.045 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhc-CCC-CCHHhH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD-VGRAINAFYAYKRF-KFA-VGIEDF 141 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~ 141 (481)
..+|...+..+-. |+++.+..+|++.... .|+ ...|..-+....+.++ .+....+|+..... |.. .+...|
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps---~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYN---LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCC---HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCC---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4455555555544 8899999999999885 455 8888888877776663 46677888887753 433 366788
Q ss_pred HHHHHHHHc----CCChhhHHHHHhhccCCCCCc-h-HhHHHHHHHHH------------HhcCCHHHHHHHHHHHHhcC
Q 042941 142 QGLLSALCR----YKNVQDAEHLMFCNKDVFPFN-T-KSFNIILNGWC------------NIIGSSREAERVWMEMSQRG 203 (481)
Q Consensus 142 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~-~~~~~l~~~~~------------~~~~~~~~a~~~~~~~~~~g 203 (481)
...+..+.. .++++.+..+|++... .|+. . ..|......-. ...+.+..|..+++.+...-
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888876553 3568889999988654 2322 1 22222222110 01122333444444433210
Q ss_pred CcccHHhHHHHHHHHHhc--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 042941 204 ICYDVVSFSCIISCYSKA--RN-----LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAP 276 (481)
Q Consensus 204 ~~~~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (481)
...+...|...+..-... +- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 001333555555432221 11 345778899888763 567888988999999999999999999999987 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHhc---hhHHHHHHHHHHHcCC
Q 042941 277 NVVTYNSLIKPLCKARKLDEARQAFDEMLQRG---------ISPT---IRTYHAFLDIIRT---GEEVFGLLESMRKMGC 341 (481)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~---~~~~~~li~~~~~---~~~~~~~~~~~~~~~~ 341 (481)
+...|. .|+.....++. ++.+.+.- ..+. ...|...+....+ .+.+..+++.. +..
T Consensus 245 ~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~- 315 (493)
T 2uy1_A 245 GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE- 315 (493)
T ss_dssp SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-
T ss_pred cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-
Confidence 332222 23332222222 23322210 0111 1233344443322 24456777766 221
Q ss_pred CCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWR-QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDEL 420 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 420 (481)
..+...|......-...+ +.+.|..+|+...+.. +-++..|...+.-..+.|+.+.|..+|+++. .....|..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 234455543333222333 6999999999988753 2245567777887788999999999999972 23455555
Q ss_pred HHHHHhhhhHHH
Q 042941 421 LQDWSYNKQFVE 432 (481)
Q Consensus 421 l~~~~~~~~~~~ 432 (481)
.+..-...|..+
T Consensus 390 ~~~fE~~~G~~~ 401 (493)
T 2uy1_A 390 MIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHSCHH
T ss_pred HHHHHHHCCCHH
Confidence 555433334333
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=2.3e-06 Score=69.15 Aligned_cols=121 Identities=6% Similarity=0.058 Sum_probs=76.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--HH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHA-LAKGRLV--KD 261 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 261 (481)
..|++++|...++........ +...+..+...|...|++++|...|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456666677777666554322 45566667777777777777777777766653 3355566666666 6667776 77
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 262 AISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
|...|+++.+..+. +...+..+...|...|++++|...|+...+..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777665433 45666667777777777777777777776653
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.6e-06 Score=71.80 Aligned_cols=99 Identities=6% Similarity=-0.039 Sum_probs=61.9
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQR----GICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIEC 241 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 241 (481)
...+..+...+. ..|++++|...+++.... +-.+ ....+..+...+...|++++|...+++.... +...
T Consensus 66 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 66 HRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 344555666666 677777777777665443 2111 2345666777777788888888877776542 1110
Q ss_pred -CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 242 -DRKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 242 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
-..++..+...+...|++++|...+++..+
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 123356677778888888888888877654
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=3.8e-06 Score=62.93 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
.+..+...+...|++++|...++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 36 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKAL 36 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.48 E-value=8e-07 Score=69.45 Aligned_cols=102 Identities=9% Similarity=-0.046 Sum_probs=70.8
Q ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHH
Q 042941 99 SLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNII 178 (481)
Q Consensus 99 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 178 (481)
++.+...+..+...+...|++++|+..|+.....+ +.++..|..+..+|...|++++|+..|++.....|.+...|..+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 33345666677777777777777777777777654 23566677777777777777777777776555455566677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
..+|. ..|++++|...|+.....
T Consensus 111 g~~~~-~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQL-RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHh
Confidence 77777 777777777777777665
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.46 E-value=2.1e-06 Score=67.04 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=56.2
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+...+..+...+. ..|++++|...|+........ +...|..+..++...|++++|...|+...... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 4444555555555 566666666666665554322 44555555566666666666666666665543 33445555566
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+|...|++++|...|+...+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666655543
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.5e-06 Score=70.24 Aligned_cols=122 Identities=8% Similarity=0.046 Sum_probs=77.7
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-HHhcCCH--H
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-YSKARNL--H 225 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~--~ 225 (481)
...|++++|...++......|.+...+..+...+. ..|++++|...|+........ +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34556666666666544434456666777777777 777777777777776655322 45556666666 5667776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 042941 226 KVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
+|...++...+.. +.+...+..+..+|...|++++|...|+++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777653 3456667777777777777777777777777653
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=7.6e-07 Score=73.57 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=86.4
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc---------------HHhHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD---------------VVSFS 212 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---------------~~~~~ 212 (481)
....|+++.+.+.++......+.....+..+...+. ..|++++|...|++......... ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334445555544443221111123344555666666 77777777777777765422211 25666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042941 213 CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKAR 292 (481)
Q Consensus 213 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 292 (481)
.+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 67777777888888888887777763 446667777777777888888888888777765433 4556666666666666
Q ss_pred CHHHHH-HHHHHHHH
Q 042941 293 KLDEAR-QAFDEMLQ 306 (481)
Q Consensus 293 ~~~~a~-~~~~~m~~ 306 (481)
+..++. ..+..+..
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 655555 44444433
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=5.2e-05 Score=67.34 Aligned_cols=221 Identities=8% Similarity=-0.052 Sum_probs=161.8
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc-C-CH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVR-KFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAV-H-DV 119 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~-~-~~ 119 (481)
...++|+++++.+....+ -+..+|+..-.++...| .+++++++++.+... ++-+..+|+.-...+... + ++
T Consensus 68 e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCCh
Confidence 344679999999875442 46778999888888888 599999999999987 555588888777766666 6 88
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChh--------hHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC---
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQ--------DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS--- 188 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 188 (481)
++++..++.+.+.. +-+..+|+.-.-++.+.+.++ ++++.++++....+.|...|+.....+. +.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~-~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV-SRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT-TSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcccccc
Confidence 99999999999865 347778877655555555555 7888887766666778889988888877 6665
Q ss_pred ----HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----C
Q 042941 189 ----SREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL--------------------HKVLRLFDQMKRMG-----I 239 (481)
Q Consensus 189 ----~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 239 (481)
++++++.+++.....+. |...|+-+-..+.+.|.. ....++...+...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 68899999888877544 777887766666665543 23333333333221 1
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 240 ECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.++......+...|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 367788889999999999999999999999754
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.43 E-value=2.7e-06 Score=64.44 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..++...... +.+...+..+..++...|++++|...+.......+.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4445555555555666666666665555432 123444444444444444554444444443222233333444444444
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042941 183 CNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~ 201 (481)
. ..|++++|...|+....
T Consensus 91 ~-~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 S-SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp H-HTTCHHHHHHHHHHHHH
T ss_pred H-HhCCHHHHHHHHHHHHh
Confidence 4 44444444444444433
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=1.4e-06 Score=68.07 Aligned_cols=99 Identities=15% Similarity=-0.059 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHH
Q 042941 102 TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNG 181 (481)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 181 (481)
+...+..+...+...|++++|+..|+.....+ +.+...|..+..++...|++++|+..|++.....|.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35555566666666666777766666666543 23555566666666666666666666666444344455666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 042941 182 WCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~ 202 (481)
+. ..|++++|...|+.....
T Consensus 99 ~~-~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LL-QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HH-HTTCHHHHHHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHHHHHH
Confidence 66 666666666666665544
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=6.3e-06 Score=63.78 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=59.9
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI 250 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (481)
+...+..+...+. ..|++++|...|+........ +...|..+..++...|++++|...|+.....+ +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3444455555555 666666666666666655332 45556666666666666666666666666653 33455566666
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+|...|++++|...|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666544
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=5.3e-06 Score=71.17 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=133.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH-------HHHHHcCCChhhHHHHHhhccCCCCC-------c------
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL-------LSALCRYKNVQDAEHLMFCNKDVFPF-------N------ 171 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~-------~------ 171 (481)
++ ..++...|.+.|.++..... -....|..+ ...+.+.+...++...+..... ..| +
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT-CCGGGGCCEEECCTTTC
T ss_pred cc-cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc-CChhhhhhhhccCCccc
Confidence 44 57999999999999998652 245677766 3455554445555544433211 011 1
Q ss_pred ---------hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 042941 172 ---------TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD 242 (481)
Q Consensus 172 ---------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 242 (481)
....-.+...+. ..|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~-~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEA-AQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHH-HHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred ccccccCCHhHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 123344566677 8999999999999887764 333355556668899999999999998554431 121
Q ss_pred --HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 243 --RKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPN--VVTYNSLIKPLCKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 243 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 308 (481)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677788899999999999999999985432243 3355666778889999999999999998864
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=0.00049 Score=60.81 Aligned_cols=220 Identities=13% Similarity=0.024 Sum_probs=140.4
Q ss_pred ccCChh-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 77 KVRKFD-TAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD----------VGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 77 ~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
+.|.+. +|+++++.+... +|....+|+.--..+...+. +++++.+++.+...+. -+..+|+.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 445554 788888888876 33345555543333333222 5678888888877653 3667777766
Q ss_pred HHHHcCC--ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc-
Q 042941 146 SALCRYK--NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGS-SREAERVWMEMSQRGICYDVVSFSCIISCYSKA- 221 (481)
Q Consensus 146 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~- 221 (481)
-++...+ .+++++.+++.+....+.|...|+.-...+. ..|. ++++++.++.+.+..+. |...|+.....+.+.
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 6666666 4778888887766666677778877776666 6676 58888888888877554 666776655555544
Q ss_pred -------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----------CChHHHHHHHHHHHHcCCCCC
Q 042941 222 -------------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG-----------RLVKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 222 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 277 (481)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+.. |+
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd 270 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PE 270 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--cc
Confidence 34778888888887764 55777776555455444 34677888888887763 33
Q ss_pred hhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHC
Q 042941 278 VVTYNSLIKPL-----CKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 278 ~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~ 307 (481)
. .|+.+-.+. ...|..+++...+.++++-
T Consensus 271 ~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 271 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp C-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3 343222211 1345566677777776654
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=6.8e-06 Score=74.04 Aligned_cols=164 Identities=9% Similarity=-0.032 Sum_probs=88.7
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHH
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAE 158 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 158 (481)
+++++|.+.|+...+. ++.....+..+...+...|++++|+..|++..+...... .+ ..+.+.
T Consensus 127 ~~~~~A~~~~~~a~~~----~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~-----------~~~~~~ 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--SF-----------SNEEAQ 189 (336)
T ss_dssp EEEECCCCGGGCCHHH----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--CC-----------CSHHHH
T ss_pred eecccccchhcCCHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc--cC-----------ChHHHH
Confidence 3444555554443322 222366777788888888888888888888876542211 00 000000
Q ss_pred HHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 159 HLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.+- +.....|..+..++. +.|++++|+..+++....... +...|..+..+|...|++++|...|+...+..
T Consensus 190 ~~~-------~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 190 KAQ-------ALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHH-------HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHH-------HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 000 001344555555555 666666666666666554322 45555666666666666666666666666553
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHH-HHHHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDA-ISLMKSM 269 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 269 (481)
+.+...+..+..++...|+.++| ...|..|
T Consensus 261 -P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 261 -PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666655 3344444
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=6.3e-07 Score=74.05 Aligned_cols=166 Identities=6% Similarity=-0.072 Sum_probs=72.4
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
+......|+++.+.+.|+.-... .......+..+...+...|++++|+..|++..+.... ++ .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE----KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH-------
T ss_pred hhhhhhhhhccccCchhhCCHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh-------
Confidence 33344445555555555432221 1112445666666777777777777777777653211 11 00000
Q ss_pred CChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 152 KNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
....-... .....+..+..++. ..|++++|+..++....... .+...+..+..++...|++++|...|
T Consensus 78 -~~~~~~~~---------~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -ILLDKKKN---------IEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -HHHHHHHH---------HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -hHHHHHHH---------HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000000 01234444555555 55556666555555554422 13445555555555666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 232 DQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
+...+.. +.+...+..+..++...++.+++.
T Consensus 146 ~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 146 YKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5555542 234445555555555554444444
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.2e-05 Score=60.56 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPL 288 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 288 (481)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344555555666666666666666666553 335556666666666666666666666666655433 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 042941 289 CKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~ 307 (481)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.8e-05 Score=59.67 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=73.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
...+..+...+. ..|++++|+..|++..+.... +...|..+..++.+.|++++|...++...+.+ +.+...+..+..
T Consensus 4 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345666666777 788888888888877766433 56677777888888888888888888877764 445677777888
Q ss_pred HHHcCCChHHHHHHHHHHHHc
Q 042941 252 ALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~ 272 (481)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=1.4e-05 Score=59.01 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|...|+..... ++.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344555555666666666666666665554 22225555556666666666666666666655543 1234455555
Q ss_pred HHHHHcCCChhhHHHHHhhccC
Q 042941 145 LSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~ 166 (481)
..++...|++++|...++....
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=4.3e-05 Score=56.33 Aligned_cols=94 Identities=15% Similarity=0.009 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+..+...+. ..|++++|...|+........ +...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 7 ~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 333344444 444444444444444433211 33344444444444444444444444444432 223344444444444
Q ss_pred cCCChHHHHHHHHHHHH
Q 042941 255 KGRLVKDAISLMKSMEE 271 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~ 271 (481)
..|++++|...++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444443
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1.5e-05 Score=58.26 Aligned_cols=98 Identities=9% Similarity=-0.040 Sum_probs=50.3
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIEC--DRKVYNAV 249 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 249 (481)
...+..+...+. ..|++++|...++...+.... +...+..+...+...|++++|...++...+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 334444444555 555555555555555444222 34445555555555555555555555555542 22 34455555
Q ss_pred HHHHHcC-CChHHHHHHHHHHHHc
Q 042941 250 IHALAKG-RLVKDAISLMKSMEEK 272 (481)
Q Consensus 250 i~~~~~~-g~~~~a~~~~~~~~~~ 272 (481)
..++... |++++|.+.++...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555555 5555555555555544
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.28 E-value=2.1e-05 Score=60.80 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=85.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042941 208 VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKP 287 (481)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 287 (481)
...+..+...+.+.|++++|...|+.....+ +.+...|..+..+|...|++++|...|++..+..+. +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3456667788899999999999999999875 557888999999999999999999999999987654 67778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 042941 288 LCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~ 307 (481)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.00039 Score=61.44 Aligned_cols=205 Identities=13% Similarity=0.039 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHH
Q 042941 224 LHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR--LVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK-LDEARQA 300 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~ 300 (481)
+++++.+++.+.... +-+..+|+.-.-++...+ .+++++.+++.+.+..++ |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 566777777777654 446667776666666666 377888888888777655 67777766666666676 5777887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 042941 301 FDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDR 380 (481)
Q Consensus 301 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 380 (481)
+..+.+.++. |...|+.....+... ... .+... ..-...+.++++++.+.......+ -|.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l----------~~~--~~~~~------~~~~~~~~~~eEle~~~~ai~~~P-~d~ 227 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQL----------HPQ--PDSGP------QGRLPENVLLKELELVQNAFFTDP-NDQ 227 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHH----------SCC--C------------CCCHHHHHHHHHHHHHHHHHST-TCH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHh----------hhc--ccccc------ccccchHHHHHHHHHHHHHHHhCC-CCH
Confidence 7777776533 444443332221110 000 00000 000011346677777777776543 366
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHH-----HH---hhhhHHHHHHHHHhhc
Q 042941 381 SSYTALIHALFLN-----------GKLEEAHQYYMEMKEKQLLPEPKTDELLQD-----WS---YNKQFVERQIASLKAH 441 (481)
Q Consensus 381 ~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-----~~---~~~~~~~~~~~~~~~~ 441 (481)
..|+.+-..+.+. +.++++++.++++.+ ..||. .+..+.. .+ +..+.....+..+.+.
T Consensus 228 SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 228 SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 6776555555544 457888888888887 45654 2322111 11 2223455677888888
Q ss_pred CccCCCCccccc
Q 042941 442 QPQSGQNTRVIS 453 (481)
Q Consensus 442 ~~~~~~~~~~l~ 453 (481)
+|....-|..+.
T Consensus 305 Dp~r~~~y~d~~ 316 (331)
T 3dss_A 305 DPMRAAYLDDLR 316 (331)
T ss_dssp CGGGHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 888666665554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=1.2e-05 Score=61.63 Aligned_cols=97 Identities=9% Similarity=-0.128 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++......|.+...+..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5555555555556666666666665555443 223444555555555555555555555443333333444555555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042941 183 CNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~ 201 (481)
. ..|++++|...|+....
T Consensus 88 ~-~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 L-EMESYDEAIANLQRAYS 105 (137)
T ss_dssp H-HTTCHHHHHHHHHHHHH
T ss_pred H-HHhhHHHHHHHHHHHHH
Confidence 5 55555555555555443
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=8.4e-06 Score=59.67 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--CHHhH
Q 042941 64 STREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAV--GIEDF 141 (481)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 141 (481)
+...+..+...+...|++++|...|+...+. ++.+..++..+...+...|++++|+..+++..+.. +. +...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 4556667777777888888888888777665 22236677777777777888888888887777653 22 45666
Q ss_pred HHHHHHHHcC-CChhhHHHHHhhccCC
Q 042941 142 QGLLSALCRY-KNVQDAEHLMFCNKDV 167 (481)
Q Consensus 142 ~~ll~~~~~~-~~~~~a~~~~~~~~~~ 167 (481)
..+..++... |++++|.+.+......
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777777 7777777777765443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=3.5e-05 Score=58.88 Aligned_cols=98 Identities=10% Similarity=-0.046 Sum_probs=56.8
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34455555556666666666666666655543 334555566666666666666666666666554332 4555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042941 287 PLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~ 306 (481)
+|...|++++|...|+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665543
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.21 E-value=3.7e-05 Score=61.02 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+.... +...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444455555555555555544432 224444445555555555555555555555444322 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQ 306 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~ 306 (481)
..|++++|...|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555554443
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=3.8e-05 Score=57.91 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CC----hhhHH
Q 042941 209 VSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA--PN----VVTYN 282 (481)
Q Consensus 209 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 282 (481)
.++..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.... ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777776653 445666777777777777777777777766543211 01 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 283 SLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
.+-.++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566667777777777777776553
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=5.3e-05 Score=60.10 Aligned_cols=101 Identities=11% Similarity=-0.059 Sum_probs=79.0
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042941 170 FNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (481)
.+...+..+...+. ..|++++|+..|++....... +...|..+..+|.+.|++++|+..|+...+.. +.+...|..+
T Consensus 9 ~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34556777777777 888888888888888776433 56777888888888888888888888888764 4467788888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC
Q 042941 250 IHALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
..+|...|++++|...|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888888887653
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=8.9e-05 Score=57.33 Aligned_cols=99 Identities=13% Similarity=-0.011 Sum_probs=61.6
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 042941 170 FNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKV 245 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 245 (481)
.+...+..+...+. ..|++++|...|+...+.. |+ ...+..+..++...|++++|...++...+.. +.+...
T Consensus 26 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELF-KCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 34455666666666 6677777777777666542 33 4455566666666677777777666666553 334556
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 246 YNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+..+..++...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666777776666666654
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=3.3e-05 Score=58.26 Aligned_cols=24 Identities=13% Similarity=-0.125 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 107 LILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
..+...+.+.|++++|+..|++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al 35 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAI 35 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333334444444444444444433
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=6.1e-05 Score=56.72 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--CC----hhhHHH
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA--PN----VVTYNS 283 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 283 (481)
.+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555566666666665555543 334455555555555666666666666555443211 11 444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 284 LIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
+..++...|++++|...|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555666666666666666665554
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00011 Score=68.70 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=123.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 042941 180 NGWCNIIGSSREAERVWMEMSQRGICYD----------------VVSFSCIISCYSKARNLHKVLRLFDQMKRMG-IECD 242 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 242 (481)
..+. +.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 12 ~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 12 RRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3345 67777777777777765422110 1235667788888888888888887766521 1112
Q ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 243 R----KVYNAVIHALAKGRLVKDAISLMKSMEEK----GVAPN-VVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTI 313 (481)
Q Consensus 243 ~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 313 (481)
. .+.+.+-..+...|+++.|..+++..... +..+. ..++..+...|...|++++|..+++++...-...+
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~- 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD- 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-
Confidence 1 12233333444567888888888776532 22222 34567778888888999999888887654211100
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC-C-C--HHHHHHHH
Q 042941 314 RTYHAFLDIIRTGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN--GNG-P-D--RSSYTALI 387 (481)
Q Consensus 314 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~ 387 (481)
.-+....++..++..|...|++++|..++++.... .+. | . ...+..+.
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 170 --------------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp --------------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred --------------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 00112346777778888888888888888776541 111 1 1 23455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042941 388 HALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~m~~ 408 (481)
..+...|++++|...|.+..+
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 667778888888877766543
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=0.00011 Score=56.82 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
..+..+...+. ..|++++|...++........ +...+..+..++...|++++|...|+...+.
T Consensus 66 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 66 VLHRNRAACHL-KLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34444444444 455555555555554443211 3444444555555555555555555555543
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=3.5e-05 Score=58.12 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI--ECD----RKVY 246 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 246 (481)
..+..+...+. ..|++++|...|+....... .+...+..+...+...|++++|...++....... .++ ..++
T Consensus 5 ~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAY-KKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555555566 66666666666666655432 2445566666666666777777766666655421 111 4556
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
..+..++...|++++|...|+...+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666677777777777777766664
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=7.4e-06 Score=77.22 Aligned_cols=131 Identities=14% Similarity=0.040 Sum_probs=93.0
Q ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 171 NTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--------------VVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
....+..+...+. +.|++++|...|++..+...... ...|..+..+|.+.|++++|+..++...+
T Consensus 267 ~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456777777788 88899999988888776522211 46777777888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQ-AFDEM 304 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m 304 (481)
.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+..++.+.++.+++.. .++.|
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 446777888888888888888888888888776443 55667777777777777776653 34444
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=4e-05 Score=57.21 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=45.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARK 293 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 293 (481)
+...+.+.|++++|...|+...+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 3344445555555555555555442 234444555555555555555555555555544332 34444455555555555
Q ss_pred HHHHHHHHHHHHH
Q 042941 294 LDEARQAFDEMLQ 306 (481)
Q Consensus 294 ~~~a~~~~~~m~~ 306 (481)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00036 Score=65.21 Aligned_cols=198 Identities=9% Similarity=-0.065 Sum_probs=105.8
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcc-------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLV-------------TKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA-VG 137 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 137 (481)
...+.+.|++++|++.|..+.+........ ...++..+...|...|++++|...+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445667788888888888877642211100 0134666777888888888888887776542111 11
Q ss_pred HH----hHHHHHHHHHcCCChhhHHHHHhhcc------CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC-
Q 042941 138 IE----DFQGLLSALCRYKNVQDAEHLMFCNK------DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR--GI- 204 (481)
Q Consensus 138 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~- 204 (481)
.. +.+.+-..+...|+.+.+..++.... .....-..++..+...+. ..|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcc
Confidence 11 12223333444566666666664421 111122345555666666 667777777666655432 11
Q ss_pred -cc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 205 -CY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM----GIECD--RKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 205 -~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
.+ ....+..++..|...|++++|..+++..... +.++. ...+..+...+...|+++.|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1235556666666666666666666655432 11111 1234444455556666666666655543
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.06 E-value=2.3e-05 Score=58.58 Aligned_cols=93 Identities=12% Similarity=-0.082 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA 147 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 147 (481)
+..+...+.+.|++++|...|+...+. ++.+...|..+...+...|++++|+..|++..+.+. -+...+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 445556666777777777777777665 333466677777777777777777777777766542 245566666666
Q ss_pred HHcCCChhhHHHHHhhcc
Q 042941 148 LCRYKNVQDAEHLMFCNK 165 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~ 165 (481)
+...|++++|...+++..
T Consensus 95 ~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 666677777766666543
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=6.8e-05 Score=58.92 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc-cc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 042941 173 KSFNIILNGWCNIIGSSREAERVWMEMSQRGIC-YD----VVSFSCIISCYSKARNLHKVLRLFDQMKRMG----IEC-D 242 (481)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 242 (481)
.++..+...+. ..|++++|...+++....... ++ ..++..+...+...|++++|...++...+.. ..+ .
T Consensus 10 ~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34555666666 677777777777765543111 11 1356667777778888888888887765431 111 1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 243 RKVYNAVIHALAKGRLVKDAISLMKSMEEK----GVA-PNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
...+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345666777788888888888888776543 111 1134566677778888888888888887654
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=3.9e-05 Score=72.63 Aligned_cols=118 Identities=7% Similarity=-0.015 Sum_probs=87.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChH
Q 042941 181 GWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVK 260 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (481)
.+. +.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..+|...|+++
T Consensus 15 ~~~-~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYF-KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STT-TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHH-HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 344 678888999888888776333 57788888888889999999999998888874 456778888888899999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKP--LCKARKLDEARQAFD 302 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 302 (481)
+|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988876433 44455555555 777888999998887
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=0.00043 Score=51.96 Aligned_cols=91 Identities=8% Similarity=-0.052 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 042941 180 NGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECD---RKVYNAVIHALA 254 (481)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~ 254 (481)
..+. ..|++++|...|+.......... ...+..+..++...|++++|...|+...+.. +.+ ...+..+..++.
T Consensus 10 ~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHH
T ss_pred HHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHH
Confidence 3344 45555555555555554322111 0244444555555555555555555555542 112 334444555555
Q ss_pred cCCChHHHHHHHHHHHHc
Q 042941 255 KGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~ 272 (481)
..|++++|...|+.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555544
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=5.8e-05 Score=59.32 Aligned_cols=28 Identities=11% Similarity=-0.116 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 104 QTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.++..+...+...|++++|+..+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3455555666666666666666666553
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.00026 Score=53.17 Aligned_cols=63 Identities=8% Similarity=-0.018 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYD--VVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
.+..+...+. ..|++++|...|+.......... ...+..+..++...|++++|...|+.+.+.
T Consensus 41 ~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 41 ALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444444455 55555555555555554422210 334444555555566666666666555554
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=3.4e-05 Score=56.35 Aligned_cols=98 Identities=11% Similarity=-0.130 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-----
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG----- 137 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 137 (481)
++...+..+...+.+.|++++|.+.|++..+. ++.+..++..+..++...|++++|+..+++..+.. |+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 75 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVA 75 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHH
Confidence 35677888889999999999999999998876 33347888899999999999999999999988754 33
Q ss_pred --HHhHHHHHHHHHcCCChhhHHHHHhhccC
Q 042941 138 --IEDFQGLLSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 138 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 166 (481)
...+..+..++...|+.+.|...++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 44556666777777777777666655443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.86 E-value=0.00014 Score=68.43 Aligned_cols=130 Identities=11% Similarity=-0.000 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------HHhHHHHHHHHHcCCChhhHHHHHhhccCCC
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVG--------------IEDFQGLLSALCRYKNVQDAEHLMFCNKDVF 168 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 168 (481)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 55566666666666666666666666655321111 4566667777777777777777776654444
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLR-LFDQM 234 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~ 234 (481)
+.+...+..+..+|. ..|++++|...|++..+.... +...+..+..++.+.++.+++.+ ++..|
T Consensus 348 p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777 777777777777777665322 34456666666666666665543 34443
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00021 Score=56.36 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 244 KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..|..+..+|.+.|++++|...++...+..+. +...|..+..+|...|++++|...|+...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44555555566666666666666665554332 4555555566666666666666666655544
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=0.00011 Score=66.91 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
..+..+...+.+.|++++|+..|++..+. . .. .. ..... +...... +.+..+|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~----~---~~-~~-------~~~~~-------~~~~~~~-~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY----V---EG-SR-------AAAED-------ADGAKLQ-PVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----H---HH-HH-------HHSCH-------HHHGGGH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH----h---hc-Cc-------cccCh-------HHHHHHH-HHHHHHHHHHH
Confidence 34666677777788888888888777652 0 00 00 00000 0000010 11233444455
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLH 225 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 225 (481)
.+|.+.|++++|+..+++.....+.+...+..+..+|. ..|++++|...|++..+.... +...+..+..++...++.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544333444555555555555 555666666555555544221 3344444445555555444
Q ss_pred HHH
Q 042941 226 KVL 228 (481)
Q Consensus 226 ~a~ 228 (481)
++.
T Consensus 359 ~a~ 361 (370)
T 1ihg_A 359 DKE 361 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.85 E-value=2.3e-05 Score=74.14 Aligned_cols=118 Identities=8% Similarity=-0.129 Sum_probs=65.8
Q ss_pred HHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC
Q 042941 74 ILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN 153 (481)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 153 (481)
.+.+.|++++|.+.|++..+. ++.+..++..+...+...|++++|+..+++..+.. +.+...+..+..+|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566666666666666654 23335666666666666666766666666666543 2245556666666666666
Q ss_pred hhhHHHHHhhccCCCCCchHhHHHHHHH--HHHhcCCHHHHHHHHH
Q 042941 154 VQDAEHLMFCNKDVFPFNTKSFNIILNG--WCNIIGSSREAERVWM 197 (481)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 197 (481)
+++|++.|++.....|.+...+..+..+ +. +.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH-HHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence 6666666665433333333444444433 55 5566666666665
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.85 E-value=5.5e-05 Score=56.04 Aligned_cols=86 Identities=8% Similarity=-0.012 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHhcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHH
Q 042941 186 IGSSREAERVWMEMSQRG--ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAI 263 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 263 (481)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555556665555543 11123445555555666666666666666655543 334555555555666666666666
Q ss_pred HHHHHHHHc
Q 042941 264 SLMKSMEEK 272 (481)
Q Consensus 264 ~~~~~~~~~ 272 (481)
..|++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=0.00028 Score=64.30 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------Cc-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRG--------------IC-YDVVSFSCIISCYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g--------------~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.+..+...+. +.|++++|+..|++..+.- .. .+...|..+..+|.+.|++++|...++...+..
T Consensus 225 ~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3556666777 7888888888887776510 11 123455666666666677777776666666653
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042941 239 IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 297 (481)
+.+...+..+..+|...|++++|...|++..+.... +...+..+...+...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666655322 444444444444444444444
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.80 E-value=2.2e-05 Score=58.25 Aligned_cols=52 Identities=8% Similarity=-0.078 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 79 RKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
|++++|+..|++..+.+.. ++.+..++..+...+...|++++|+..|++..+
T Consensus 4 g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 55 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55 (117)
T ss_dssp ---CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444443210 112233444444444444444444444444443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.79 E-value=0.00011 Score=66.10 Aligned_cols=147 Identities=10% Similarity=-0.092 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLL 145 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 145 (481)
..+..+...+.+.|++++|...|+..... .|+ ... +...++.+++...+. ...|..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~---~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGD---DFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCH---HHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hcc---chh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 44556666677777888888877776654 122 110 011111111111110 01444555
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHH-HHhcCCH
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISC-YSKARNL 224 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~ 224 (481)
.+|.+.|++++|+..+++.....+.+...+..+..+|. ..|++++|...|++..+.... +...+..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543333344555555555555 555666665555555443211 22233333322 1223344
Q ss_pred HHHHHHHHHHHH
Q 042941 225 HKVLRLFDQMKR 236 (481)
Q Consensus 225 ~~a~~~~~~~~~ 236 (481)
+.+..+|..|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 455555555543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00061 Score=53.67 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C---------CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQR--------G---------ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--------g---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
.+......+. +.|++++|+..|...... . -+.+...|..+..+|.+.|++++|+..++...+
T Consensus 13 ~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4444555555 666666666666655443 0 011335677778888888889999888888888
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 237 MGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 74 556778888888888889999999888888876
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0015 Score=63.05 Aligned_cols=169 Identities=11% Similarity=-0.027 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcC
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHD----------VGRAINAFYAYKRFKFAVGIEDFQGLLSALCRY 151 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 151 (481)
++|++.++.+... ++....+|+.--..+...|+ +++++..++.+.+... -+..+|+.-.-++.+.
T Consensus 46 eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 4556666666554 33334455544444444444 5666666666655442 2445555555555555
Q ss_pred C--ChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhc-------
Q 042941 152 K--NVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIG-SSREAERVWMEMSQRGICYDVVSFSCIISCYSKA------- 221 (481)
Q Consensus 152 ~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~------- 221 (481)
+ ++++++..++++....+.+...|+.-...+. +.| .++++++.++.+.+..+. +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 5 4455665555544444445555555555544 455 555666666555554333 444555444443332
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042941 222 -------RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRL 258 (481)
Q Consensus 222 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (481)
+.++++++.+....... +-|...|.-+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566777776666653 4456666665555555554
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.65 E-value=0.001 Score=51.35 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIEC------D-----RKVYNAVIHALAKGRLVKDAISLMKSMEEK------- 272 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------- 272 (481)
+......+.+.|++++|+..|+...+..... + ...|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777776666542110 2 227777888888888888888888887775
Q ss_pred CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 273 GVAPNVVTY----NSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 273 ~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
.+. +...| ...-.++...|++++|+..|++..+
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 432 45566 7778888888999999988888754
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=0.00023 Score=66.98 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=96.3
Q ss_pred HHHcCCChHHHHHHHHHHHHcC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 042941 252 ALAKGRLVKDAISLMKSMEEKG---VAP----NVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR 324 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 324 (481)
.+...|++++|+.++++..+.. +.| ...+++.|...|...|++++|..++++..+-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 4567899999999998876531 112 3457888999999999999999999886542
Q ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHH
Q 042941 325 TGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE-----NGNG-PD-RSSYTALIHALFLNGKLE 397 (481)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~ 397 (481)
.+.......+-...+++.|...|..+|++++|..++++..+ .|.. |+ ..+.+.+-.++...|.++
T Consensus 381 --------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 381 --------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp --------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11111111112345788999999999999999999998765 3432 22 335667778888999999
Q ss_pred HHHHHHHHHHHC
Q 042941 398 EAHQYYMEMKEK 409 (481)
Q Consensus 398 ~A~~~~~~m~~~ 409 (481)
+|..+|.++++.
T Consensus 453 ~ae~~~~~~~~~ 464 (490)
T 3n71_A 453 QNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00017 Score=64.93 Aligned_cols=128 Identities=10% Similarity=-0.002 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHH------------------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVV------------------SFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
.+..+...+. +.|++++|...|++.... .|+.. .|..+..+|.+.|++++|...++...
T Consensus 181 ~~~~~g~~~~-~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 181 RRKMDGNSLF-KEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHTC-SSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555 667777777777665544 22221 45555555666666666666666655
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 042941 236 RMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKP-LCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 236 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~ 306 (481)
+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+...|..|..
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 543 334555556666666666666666666655443221 22233333222 1223444555555555543
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.63 E-value=0.0015 Score=62.95 Aligned_cols=175 Identities=7% Similarity=-0.091 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC----------hhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN----------VQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
..-++|+..++.+...+.. +..+|+.--.++...++ +++++..++.+....|.+..+|+.-...+. +.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-Hc
Confidence 3457889999999886532 45667665555555555 888888888876667778888888887777 78
Q ss_pred C--CHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-------
Q 042941 187 G--SSREAERVWMEMSQRGICYDVVSFSCIISCYSKAR-NLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG------- 256 (481)
Q Consensus 187 ~--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 256 (481)
+ ++++++..++.+.+.... +..+|+.-..++.+.| .++++++.++.+.+.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 779999999999887655 7778887777777888 8889999988888775 45778887776666552
Q ss_pred -------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042941 257 -------RLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDE 296 (481)
Q Consensus 257 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (481)
+.++++.+.+++.....+. +...|+..-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4568888888888876554 67777777666666666433
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00036 Score=65.68 Aligned_cols=123 Identities=8% Similarity=-0.045 Sum_probs=90.8
Q ss_pred hcCCHHHHHHHHHHHHhc-----CCc-c-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQR-----GIC-Y-DVVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IEC-DRKVYNAVI 250 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~-----g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li 250 (481)
..|++++|+.++++.... |.. | ...+++.|..+|...|++++|..++++.... | ..| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 689999999999876543 211 2 2457889999999999999999999887643 2 112 345788899
Q ss_pred HHHHcCCChHHHHHHHHHHHHc-----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 251 HALAKGRLVKDAISLMKSMEEK-----GVA-P-NVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
..|...|++++|..++++..+. |.. | ...+.+.+-.++...+.+++|+.+|..+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887542 332 1 1234456667777888999999999988763
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.60 E-value=0.0014 Score=50.62 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcc------c-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 042941 175 FNIILNGWCNIIGSSREAERVWMEMSQRGICY------D-----VVSFSCIISCYSKARNLHKVLRLFDQMKRM------ 237 (481)
Q Consensus 175 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~------~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 237 (481)
+......+. +.|++++|+..|++..+..... + ...|..+..++.+.|++++|+..++...+.
T Consensus 14 ~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 444555566 7788888888888776653220 1 237888888899999999999999888875
Q ss_pred -CCCCCHHHH----HHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 238 -GIECDRKVY----NAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 238 -~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
. +-+...| .....++...|++++|+..|++..+.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 2345677 88888999999999999999988754
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0047 Score=47.00 Aligned_cols=112 Identities=7% Similarity=0.004 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHH
Q 042941 187 GSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAK----GRLVKDA 262 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 262 (481)
+++++|...|++..+.|. |+.. +...|...+.+++|.+.|+...+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456777888877777762 2322 5556666667777888888777765 56667777777776 6788888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 042941 263 ISLMKSMEEKGVAPNVVTYNSLIKPLCK----ARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 309 (481)
...|++..+.| +...+..|-..|.. .+++++|..+|+...+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888887763 55666677777777 7788888888888777653
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0007 Score=49.10 Aligned_cols=65 Identities=14% Similarity=-0.001 Sum_probs=43.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 207 DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566666677777777777777766653 345666666777777777777777777776664
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.002 Score=44.52 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
.+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444555555555555555555555442 234445555555555555555555555555544
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0014 Score=45.29 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
...+..+...+...|++++|...|++..+. ++.+..++..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 455666666777777777777777776654 22235666667777777777777777777766543 2234444444
Q ss_pred HHHH
Q 042941 145 LSAL 148 (481)
Q Consensus 145 l~~~ 148 (481)
..++
T Consensus 84 ~~~~ 87 (91)
T 1na3_A 84 GNAK 87 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.0015 Score=46.50 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEK 409 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 409 (481)
+-+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346778888999999999999999999999886533 5678999999999999999999999998754
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.31 E-value=0.0028 Score=46.29 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (481)
+...|+...+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 234445555555555555555555555555554322 344555555555555555555555555443
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0053 Score=46.69 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHh----cCCHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNI----IGSSREA 192 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a 192 (481)
+++++|+..|++..+.| .|... +...|...+.+++|.++|++.... .+...+..+...|. . .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHH
Confidence 45667777777766655 22322 445555555555566666553221 24444555555554 4 4555555
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSK----ARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 238 (481)
...|++..+.| +...+..|...|.. .+++++|...|+...+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555443 33344444444544 455555555555555544
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.29 E-value=0.0023 Score=46.85 Aligned_cols=60 Identities=3% Similarity=-0.160 Sum_probs=22.5
Q ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042941 172 TKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQ 233 (481)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 233 (481)
...+..+...+. ..|++++|...|+........ +...|..+..++...|++++|...|+.
T Consensus 19 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 19 MLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333 344444444444433332211 222333333334444444444444333
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.00088 Score=47.72 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF 132 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 132 (481)
.+...+..+...+.+.|++++|+..|+...+. ++....+|..+..++...|++++|+..|++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888888888888888888776 3334667888888888888888888888877653
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.19 E-value=0.0016 Score=50.20 Aligned_cols=70 Identities=6% Similarity=-0.067 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL----------HKVLRLFDQMKRMGIECDRKVYNAVIHALA 254 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (481)
+.+.+++|.+.++...+.... +...|..+..++...+++ ++|+..|++..+.. +-+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 445566666666666555333 455555555555555443 24444444444432 223334444444444
Q ss_pred cC
Q 042941 255 KG 256 (481)
Q Consensus 255 ~~ 256 (481)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.08 E-value=0.002 Score=49.62 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh----------HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLV----------KDAISLMKSMEEKGVAPNVVTYNSLIKPLC 289 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 289 (481)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+..+. +...|..+-.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445666666666666654 44556666566666555443 4666666666665443 4555666666665
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhH
Q 042941 290 KAR-----------KLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEE 328 (481)
Q Consensus 290 ~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 328 (481)
..| ++++|...|++..+. .|+...|...+....+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhCHh
Confidence 543 566666666666654 3555555555555444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.061 Score=47.84 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELL 421 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 421 (481)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++... +.|...||...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5678888888877888899999999999999965 7888888889999999999999999999887 56888887655
Q ss_pred HH
Q 042941 422 QD 423 (481)
Q Consensus 422 ~~ 423 (481)
-.
T Consensus 350 ~~ 351 (372)
T 3ly7_A 350 EN 351 (372)
T ss_dssp HH
T ss_pred hC
Confidence 44
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.63 E-value=0.012 Score=41.31 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=50.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 351 LIKKFSRWRQFGNVFKVWNEISENGNGPDRS-SYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 351 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
....+...|++++|...+++..+... .+.. .|..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45567889999999999999988643 3567 88899999999999999999999998753
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.60 E-value=0.12 Score=37.99 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=88.0
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhchhHHHHHH
Q 042941 254 AKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRTGEEVFGLL 333 (481)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~~ 333 (481)
.-.|..++..++..+..+. .+..-||.+|.-....-+-+-..++++.+-+- -|. +.|.....+ .
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi-------s~C~NlKrV---i 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL-------DKCQNLKSV---V 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG-------GGCSCTHHH---H
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc-------HhhhcHHHH---H
Confidence 3456777777777776654 35556666666665555555555555544221 111 011111111 1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 334 ESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLL 412 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 412 (481)
.-.... ..+...+...+.....+|+-++..+++..+... .+|++...-.+..||.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 111111 234556777788888899999999998886542 4577888888899999999999999999999888864
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.50 E-value=0.052 Score=37.69 Aligned_cols=68 Identities=7% Similarity=0.079 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042941 342 QPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQ 410 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 410 (481)
+.+...+..+..++...++ .++|..++++..+... -+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567778888887765555 7999999999998654 367788888999999999999999999999863
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.48 E-value=0.14 Score=45.47 Aligned_cols=73 Identities=5% Similarity=-0.045 Sum_probs=43.9
Q ss_pred CCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 042941 169 PFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVY 246 (481)
Q Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 246 (481)
+.+...+..+...+. ..|++++|...+++....+ |+...|..+...+.-.|++++|.+.|.+.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 445555655555555 5567777777776666654 45555555566666667777776666666654 3444444
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.43 E-value=0.012 Score=54.51 Aligned_cols=86 Identities=5% Similarity=-0.104 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHhc-----CCc-cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHH
Q 042941 186 IGSSREAERVWMEMSQR-----GIC-YD-VVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IEC-DRKVYNAVIH 251 (481)
Q Consensus 186 ~~~~~~a~~~~~~~~~~-----g~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~li~ 251 (481)
.|++++|+.++++.... |.. |+ ..+++.+..+|...|++++|..++++.... | -.| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777765442 111 22 346777777777777777777777766532 2 112 2345667777
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~ 271 (481)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.43 E-value=0.0046 Score=43.60 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=44.5
Q ss_pred HHHHHhccCChhHHHHHHHHHhcCCCCCCcccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQ-TLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
....+.+.|++++|...|+...+. ++.+.. .+..+...+...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345666778888888888888775 333466 77788888888888888888888887754
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.35 E-value=0.024 Score=39.40 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHhccCC---hhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 042941 63 HSTREYHTMIAILGKVRK---FDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFK 133 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 133 (481)
.|...+..+..++...++ .++|..++++..+. |+.++.+...+...+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566777777777754443 67888888888776 55567788888888888888888888888887654
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.27 E-value=0.023 Score=52.62 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CC-CC-ChhhHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMG---IEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEK-----GV-AP-NVVTYNSLI 285 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li 285 (481)
+.|++++|..++++..+.. +.| ...+++.+...|...|++++|+.++++..+. |. .| ...+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455556655555554321 111 1234555555566666666666665554321 11 11 123455555
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 042941 286 KPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m 304 (481)
..|...|++++|..++++.
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 5666666666666666554
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.19 Score=50.96 Aligned_cols=108 Identities=12% Similarity=0.018 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHhhcCHHHHHH-HHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHH
Q 042941 30 SSELVSEVLSWVRNDWEAAFT-FFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLI 108 (481)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~ 108 (481)
+...+..-.....++.+.|.+ ++..+ ++......++..+.+.|..+.|..+.+ + +. .
T Consensus 600 ~~~~~~~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~---~~---~ 657 (814)
T 3mkq_A 600 SLEVLEFQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP---------D---QD---Q 657 (814)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------C---HH---H
T ss_pred CcHHHHHhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC---------C---cc---h
Confidence 333333333333566666655 33221 212233666677777777777766552 1 10 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhcc
Q 042941 109 LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNK 165 (481)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 165 (481)
-.......|+++.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 122334567777777765332 355677777777777777777777776543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.17 E-value=0.015 Score=53.83 Aligned_cols=87 Identities=7% Similarity=-0.001 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----CC-CC-ChhhHHHHH
Q 042941 220 KARNLHKVLRLFDQMKRMG---IEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEK-----GV-AP-NVVTYNSLI 285 (481)
Q Consensus 220 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li 285 (481)
..|++++|..++++..+.. +.| ...+++.+..+|...|++++|..++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678999999998877531 112 2467899999999999999999999987643 32 12 245688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042941 286 KPLCKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~ 306 (481)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998654
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.14 E-value=0.25 Score=36.32 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGV 274 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (481)
+...+..+..+|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555555555555555554332 244555555555555555555555555555555544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.01 E-value=0.022 Score=52.71 Aligned_cols=93 Identities=5% Similarity=-0.073 Sum_probs=65.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC---Ccc----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRG---ICY----DVVSFSCIISCYSKARNLHKVLRLFDQMKRM-----G-IEC-DRK 244 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~ 244 (481)
+..+. ..|++++|+.++++..... +.| ...+++.+..+|...|++++|+.++++.... | ..| ...
T Consensus 294 ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELK-AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHH-hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 44455 6788888888888776531 111 2457788888888888888888888877642 2 112 235
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 245 VYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
+++.|...|...|++++|..++++..+.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6778888888888888888888887764
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.75 E-value=0.14 Score=36.32 Aligned_cols=74 Identities=18% Similarity=0.053 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWNEISENG------NGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
.+..-+..+...+.+.|+++.|...++...+.- -.+....+..+..++.+.|++++|..++++... +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 455566678889999999999999999876631 124567899999999999999999999999987 467664
Q ss_pred HH
Q 042941 417 TD 418 (481)
Q Consensus 417 ~~ 418 (481)
..
T Consensus 81 ~~ 82 (104)
T 2v5f_A 81 RA 82 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.58 E-value=0.13 Score=39.24 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 333 LESMRKMGCQPTNDTYIMLIKKFSRWR---QFGNVFKVWNEISENGNGP--DRSSYTALIHALFLNGKLEEAHQYYMEMK 407 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 407 (481)
+....+.+ +++..+.-.+..++++.+ +++++..+++...+.+ .| ....+-.+.-+|.+.|++++|.++++.+.
T Consensus 21 y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 21 FQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333444 467778778888999988 6779999999998864 23 34556667778999999999999999998
Q ss_pred HCCCCCCHhHHHHHH
Q 042941 408 EKQLLPEPKTDELLQ 422 (481)
Q Consensus 408 ~~~~~p~~~~~~~l~ 422 (481)
+ +.|+..--..+.
T Consensus 99 ~--ieP~n~QA~~Lk 111 (152)
T 1pc2_A 99 Q--TEPQNNQAKELE 111 (152)
T ss_dssp H--HCTTCHHHHHHH
T ss_pred h--cCCCCHHHHHHH
Confidence 7 567655444433
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.58 Score=36.59 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=49.2
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+..+ +..+.-.|. ..|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~-~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYL-VTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHH-HHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHH-HhCCHHHH
Confidence 34456666666665543 2455566666666666666666666655432 223333333 44555444
Q ss_pred HHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042941 193 ERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFD 232 (481)
Q Consensus 193 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 232 (481)
.++-+.....| -++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44433333222 12333344445556666555553
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.27 E-value=0.23 Score=35.15 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMG------IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33445555555555555555555544320 0123344555555555555555555555555543
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.27 E-value=0.29 Score=49.56 Aligned_cols=45 Identities=7% Similarity=-0.073 Sum_probs=21.7
Q ss_pred HcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 149 CRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
...|+++.|.++.+.+ .+...|..+...+. +.++++.|++.|..+
T Consensus 663 l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al-~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-----SAEMKWRALGDASL-QRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHH-HcCCHHHHHHHHHHc
Confidence 3445555555544332 13344555555555 555555555555444
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.64 E-value=1.2 Score=34.77 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 148 LCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEM 199 (481)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 199 (481)
....|+++.|.++.+.+ .+...|..+..... ..|+++-|+..|...
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence 33444444444444333 13344444444444 444444444444443
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.60 E-value=1.9 Score=36.82 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCccc---HHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CChH
Q 042941 190 REAERVWMEMSQRGICYD---VVSFSCIISCYSK-----ARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKG-RLVK 260 (481)
Q Consensus 190 ~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 260 (481)
..|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 222 3345555555555 256666666666655543111244555555555553 5566
Q ss_pred HHHHHHHHHHHcCCC
Q 042941 261 DAISLMKSMEEKGVA 275 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~ 275 (481)
.+.+.+++.....+.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666555433
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.34 E-value=0.35 Score=36.81 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=27.9
Q ss_pred chHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042941 171 NTKSFNIILNGWCNIIG---SSREAERVWMEMSQRGICY--DVVSFSCIISCYSKARNLHKVLRLFDQMKRM 237 (481)
Q Consensus 171 ~~~~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 237 (481)
+..+...+..+++ +.+ +.++++.+++...+.. .| ....+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus 31 ~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444444444444 444 3334555554444432 11 1222333334445555555555555555543
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.33 E-value=0.46 Score=35.78 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 042941 222 RNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVA 275 (481)
Q Consensus 222 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (481)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554432222 444544555555555666666666555555444
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.11 E-value=0.62 Score=39.77 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCH
Q 042941 224 LHKVLRLFDQMKRMGIECD---RKVYNAVIHALAK-----GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKA-RKL 294 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 294 (481)
...|...+++..+. .|+ ...|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777778888776 455 5688999999999 499999999999999976543477777778888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHH
Q 042941 295 DEARQAFDEMLQRGIS--PTIRTYHAF 319 (481)
Q Consensus 295 ~~a~~~~~~m~~~~~~--p~~~~~~~l 319 (481)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998766 665544443
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.63 Score=45.96 Aligned_cols=91 Identities=8% Similarity=-0.070 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHC-
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG---------KLEEAHQYYMEMKEK- 409 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~~~- 409 (481)
..+.+..=|..|.....|.+++++|.+.|+..... +.++..+..|+..|.+.+ +.+..+.+.-++..-
T Consensus 608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~ 685 (754)
T 4gns_B 608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYD 685 (754)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHh
Confidence 34566777899999999999999999999998875 468899999999999877 677777766666432
Q ss_pred ---CCCCCHhHHHHHHHHHhhhhHHH
Q 042941 410 ---QLLPEPKTDELLQDWSYNKQFVE 432 (481)
Q Consensus 410 ---~~~p~~~~~~~l~~~~~~~~~~~ 432 (481)
-...++.....+..++.+.|...
T Consensus 686 ~RwY~efs~~l~~~l~kLi~~~G~~k 711 (754)
T 4gns_B 686 CRYYNYCQIFNLQLLEKLCNELGTHI 711 (754)
T ss_dssp HHTTBCCCHHHHHHHHHHHHHHCHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhChHH
Confidence 12344555555656655555544
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.53 E-value=0.61 Score=42.37 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKE-----KQLLPEPKTDELL 421 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 421 (481)
....++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|++... .|+.|++.+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34557778889999999999999887753 34788999999999999999999999998654 3999999987766
Q ss_pred HHHHh
Q 042941 422 QDWSY 426 (481)
Q Consensus 422 ~~~~~ 426 (481)
-..+.
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 55543
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.37 E-value=4.9 Score=37.17 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=91.7
Q ss_pred cCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH----
Q 042941 43 NDWEAAFTFFLWAGK----QSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYC---- 114 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~---- 114 (481)
++++.|++.+..+.+ ......+......++..|...|+++...+.+..+....-.. ..+...+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql----k~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL----KLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS----HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHh
Confidence 456666665544432 23345567888889999999999998888887766542222 223333333222
Q ss_pred hcCCHHH--HHHHHHHHhh--cC-CCC---CHHhHHHHHHHHHcCCChhhHHHHHhhccC----CCC--CchHhHHHHHH
Q 042941 115 AVHDVGR--AINAFYAYKR--FK-FAV---GIEDFQGLLSALCRYKNVQDAEHLMFCNKD----VFP--FNTKSFNIILN 180 (481)
Q Consensus 115 ~~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~l~~ 180 (481)
.....+. -+.+.+.... .| +.. .......|...+...|++.+|..++..+.. ... .-...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2222221 1111111110 00 111 111223455666666666666666655321 000 01234445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----cCCcccH--HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 181 GWCNIIGSSREAERVWMEMSQ----RGICYDV--VSFSCIISCYSKARNLHKVLRLFDQMK 235 (481)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~----~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 235 (481)
.|. ..+++..|..++..... ....|+. .-+...+..+...+++.+|...|.++.
T Consensus 186 l~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555 66666666666655432 1111221 233444555555666666655555443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.28 E-value=0.92 Score=34.19 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=64.3
Q ss_pred cHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHHH-HHHHHH------HHHcCCChHHHHHHHHHHHHcC
Q 042941 207 DVVSFSCIISCYSKARNL------HKVLRLFDQMKRMGIECDRKV-YNAVIH------ALAKGRLVKDAISLMKSMEEKG 273 (481)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~li~------~~~~~g~~~~a~~~~~~~~~~~ 273 (481)
|..+|-..+...-+.|++ ++..++|++.... ++|+... +...+. .+...+++++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5566666665554 4554211 111111 1123478999999999998764
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042941 274 VAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQRGISPT 312 (481)
Q Consensus 274 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (481)
-+. ...|-...+--.+.|+...|.+++...+..+..|.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 444 55666666666789999999999999999876643
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.99 E-value=0.37 Score=33.21 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 120 GRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
=++.+.++.+...++.|++....+.+++|-+.+++..|.++|+.++..+.....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3444555555555555666666666666666666666666665554443333334444443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.74 E-value=1.5 Score=32.07 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGN---VFKVWNEISENGNG-PDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKT 417 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 417 (481)
.++..+--.+..++.+..+... ++.+++.+.+.+.+ -.....-.|.-++.+.|++++|.++++.+.+ +.|+..-
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHH
Confidence 3777777778888888887666 88888888776411 1333455567789999999999999999987 5676544
Q ss_pred HHHH
Q 042941 418 DELL 421 (481)
Q Consensus 418 ~~~l 421 (481)
-..|
T Consensus 110 A~~L 113 (126)
T 1nzn_A 110 AKEL 113 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.71 E-value=9.5 Score=38.70 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=57.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCChH
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFS--CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN--AVIHALAKGRLVK 260 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~ 260 (481)
-.|+.+....++..+.+.. +..... .+.-++...|+.+.+..+++.+.... .|....-. ++.-+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 4566666666666555431 222222 22233445666666666666666532 22222211 2334456666766
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 261 DAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
...+++..+.+.. ..++.-...+.-++...|+.+.+.++++.+.+.
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 6666777666541 112222222222444456666666666555543
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.93 E-value=2.4e-05 Score=70.83 Aligned_cols=223 Identities=9% Similarity=0.035 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHH
Q 042941 65 TREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGL 144 (481)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (481)
+.+|..+..+....+++.+|++-|-+.. | +..|..+|.+..+.|.+++.+..+...++..-.|... +.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------D---ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------D---PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------C---CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------C---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHH
Confidence 4466667777766666666655442211 2 3456667777777777777777666665543333333 367
Q ss_pred HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCH
Q 042941 145 LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNL 224 (481)
Q Consensus 145 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 224 (481)
+.+|++.++..+-++++. .|+..-...+..-+. ..|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 123 i~ayAk~~rL~elEefl~------~~N~A~iq~VGDrcf-~e~lYeAAKilys~is---------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCY-DEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS------CCSSSCTHHHHHHHH-HSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHHc------CCCcccHHHHHHHHH-HccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHH
Confidence 777777776655444331 244444455555555 5666665555553322 233344445556665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 225 HKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
..|.+.- ++ .-++.||..+..+|...+.+..|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-
T Consensus 187 q~AVdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5554322 22 236778888888888888888776665554432 222334666778888888888888876
Q ss_pred HHCCCCCCHHHHHHHHHHHhch
Q 042941 305 LQRGISPTIRTYHAFLDIIRTG 326 (481)
Q Consensus 305 ~~~~~~p~~~~~~~li~~~~~~ 326 (481)
... -....-.|+-|--.|++.
T Consensus 256 lgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSS
T ss_pred hCC-CchhHHHHHHHHHHHHhc
Confidence 532 123455566555555553
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.77 E-value=0.62 Score=42.33 Aligned_cols=57 Identities=12% Similarity=-0.090 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 106 LLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
...++..+...|++++++..+..+.... +.+...+..+|.++.+.|+..+|++.|+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444455555555555555554432 22444555555555555555555555544
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.01 E-value=1.8 Score=42.74 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=71.9
Q ss_pred hcCC-HHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHc------CCCC-CHH----------H
Q 042941 185 IIGS-SREAERVWMEMSQRGICYDVVSFSCIISCYSKARN-LHKVLRLFDQMKRM------GIEC-DRK----------V 245 (481)
Q Consensus 185 ~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~----------~ 245 (481)
..++ .+.|..+++.+.......+......++..+...++ --+|.+++.+..+. ..++ +.. .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 57788888888776333222222233333333322 22444444443321 1111 111 1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042941 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCKARKLDEARQAFDEML 305 (481)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 305 (481)
...=...|...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112234466789999999999988876433 67889999999999999999998888773
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.38 E-value=0.91 Score=33.23 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHH
Q 042941 122 AINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILN 180 (481)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 180 (481)
..+-++.+...++.|++......+++|-+.+++..|.++|+.++....+...+|..+++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33444444444555555555555555555555555555555544433333333444433
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.20 E-value=1.4 Score=32.14 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=8.7
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~ 271 (481)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444443
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.52 E-value=12 Score=39.44 Aligned_cols=81 Identities=7% Similarity=0.013 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDR----KVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIK 286 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 286 (481)
|..++..+-+.+.++.+.++-....+...+.+. ..|..+.+.+...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 556667777777777777766665553211111 24666777777777777777777776654332 344555666
Q ss_pred HHHhcCC
Q 042941 287 PLCKARK 293 (481)
Q Consensus 287 ~~~~~g~ 293 (481)
..|..|.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 5555543
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.97 E-value=4.3 Score=28.09 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
+.-+..+-++.+...++.|++.+..+.+.+|.|.+++..|.++++-.+.+ +.+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 45567777777777788888888888888888888888888888877765 33334556655543
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.58 E-value=5.8 Score=29.13 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDW 424 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 424 (481)
+.-+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-.+.+ +.+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 44566777777777888899999999999999999999999999888776 34445567666554
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.19 E-value=4.9 Score=42.43 Aligned_cols=129 Identities=11% Similarity=0.062 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCc--cc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRGIC--YD--VVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAV 249 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (481)
-|..++..+- +.+.++.+.++-....+.... ++ ...|..+.+.+...|++++|...+..+.....+ ......+
T Consensus 901 YY~hv~~LFe-~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 901 YYLHLSKKLF-EESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHH-HTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 3455555555 566666666555544432111 11 124556666666666666666666655544322 2334444
Q ss_pred HHHHHcC------------CChHHHHHHHHHHHH-c-CCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 042941 250 IHALAKG------------RLVKDAISLMKSMEE-K-GVAPNVVTYNSLIKPLCKARKLDEARQA-FDEML 305 (481)
Q Consensus 250 i~~~~~~------------g~~~~a~~~~~~~~~-~-~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~ 305 (481)
+...+.. |..++..+++...-. . .+.....-|..|-.-+...|++..|-.+ |+.+.
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 4444333 444555555543221 1 1111123355555555667777766554 44443
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.39 E-value=7.4 Score=29.01 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+-.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 335777776667777877765 456888888888754332344555677799999999999999999987 578765
Q ss_pred HHHHHHH
Q 042941 417 TDELLQD 423 (481)
Q Consensus 417 ~~~~l~~ 423 (481)
--..|-.
T Consensus 112 QA~~Lk~ 118 (144)
T 1y8m_A 112 QVGALKS 118 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.86 E-value=9.7 Score=27.98 Aligned_cols=83 Identities=14% Similarity=0.068 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 340 GCQPTNDTYIMLIKKFSRWRQ---FGNVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 340 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+-.|+..+--.+..++.+..+ ...++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 335676666667777777765 456888888888765322355666778899999999999999999986 578776
Q ss_pred HHHHHHHH
Q 042941 417 TDELLQDW 424 (481)
Q Consensus 417 ~~~~l~~~ 424 (481)
--..|-..
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.03 E-value=15 Score=30.93 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=71.9
Q ss_pred HHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CCHHhHHHHHHHHHc
Q 042941 73 AILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFA--VGIEDFQGLLSALCR 150 (481)
Q Consensus 73 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 150 (481)
..+.+.|++++|++....-++. +|.+...-..++..+|-.|+++.|..-++...+.... |....|..+|.+-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH
Confidence 4567889999999988888776 5555888888999999999999999988888765422 223344455443221
Q ss_pred CCChhhHHHHHhh--ccCCCCCchHhHHHHHHHHH-HhcCCHHHHHHHHHHHHhc
Q 042941 151 YKNVQDAEHLMFC--NKDVFPFNTKSFNIILNGWC-NIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 151 ~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~~~ 202 (481)
. .++|.- ....+.....-...++.+.. ...|+.++|..+-....+.
T Consensus 81 R------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 R------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 122221 11111111122233333322 1358888888877776543
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.89 E-value=0.11 Score=47.66 Aligned_cols=216 Identities=8% Similarity=0.044 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH
Q 042941 63 HSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
-|+..|..+|.+..+.|.+++-...+....+..-.|. .=+.|+-+|++.++..+-.+++ ..|+.....
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~-----IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq 148 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-----VETELIFALAKTNRLAELEEFI-------NGPNNAHIQ 148 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT-----TTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHH
Confidence 3677899999999999999999998876665533333 3357888999998876654443 236666677
Q ss_pred HHHHHHHcCCChhhHHHHHhhccC---------------------CCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNKD---------------------VFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQ 201 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 201 (481)
.+.+-|...|.++.|.-+|..+.. .-..++.+|..+-.++. ..+++.-|.-.--.+.-
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv-d~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV-DGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH-HSCTTTTTTHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh-CchHHHHHHHhcchhcc
Confidence 788889999999988888765421 01246678888888888 77777666544333332
Q ss_pred cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCC-----
Q 042941 202 RGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK-GVA----- 275 (481)
Q Consensus 202 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~----- 275 (481)
. ..-+..++..|-..|.+++.+.+++.-.... ......|+-|.-.|++-. +++..+.++....+ +++
T Consensus 228 h-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKvira 300 (624)
T 3lvg_A 228 H-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRA 300 (624)
T ss_dssp C-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHH
T ss_pred c-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHH
Confidence 1 1123345566778888888888888766432 456778888888887763 44433333322111 111
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHH
Q 042941 276 -PNVVTYNSLIKPLCKARKLDEAR 298 (481)
Q Consensus 276 -~~~~~~~~li~~~~~~g~~~~a~ 298 (481)
-....|.-++-.|+.-..++.|.
T Consensus 301 cE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 301 AEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhhHHHHHHHHhcchhHHHHH
Confidence 13456677777777777776554
No 252
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.28 E-value=10 Score=32.00 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=10.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCC
Q 042941 256 GRLVKDAISLMKSMEEKGVAPN 277 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~ 277 (481)
.+.......+++.+.+.|..++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSS
T ss_pred ccccchHHHHHHHHHHcCCCCC
Confidence 3333333445555555554443
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.64 E-value=22 Score=27.34 Aligned_cols=131 Identities=9% Similarity=0.072 Sum_probs=66.5
Q ss_pred CCCCCCHHH--HHHHHHHHhccCChhHHHHHHHHHhcCC-CCCCcccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 042941 59 SGYAHSTRE--YHTMIAILGKVRKFDTAWALIDEMRGGE-TGPSLVTK----QTLLILIRRYCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 59 ~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~ 131 (481)
.|+.|.... +-.-+..+...|.++.|+-+.+-+.... ..|+..++ .++..+..++...+++..|...|+..+.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344444333 3344677788889998888877754421 12232222 3556677788889999999999998753
Q ss_pred cC--CCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 042941 132 FK--FAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQR 202 (481)
Q Consensus 132 ~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 202 (481)
.. +.-+..+...+ ......... .....+...-..+..++. +.+++++|+.+++.+...
T Consensus 92 ~~k~l~k~~s~~~~~----~~~ss~p~s--------~~~~~e~Elkykia~C~~-~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPST----GNSASTPQS--------QCLPSEIEVKYKLAECYT-VLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC--------------------------------CCCCHHHHHHHHHHHHH-HTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCccccc----cccCCCccc--------ccccchHHHHHHHHHHHH-HHCCHHHHHHHHhcCCch
Confidence 21 11111111111 000000000 001234455555777777 888888888888766443
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.41 E-value=21 Score=28.46 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 359 RQFGNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415 (481)
Q Consensus 359 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 415 (481)
+....+.++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 335577777777766655332 445666666666777777777777777776666643
No 255
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.41 E-value=46 Score=29.46 Aligned_cols=60 Identities=13% Similarity=-0.041 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCCh--hhHHHHHhhccC
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNV--QDAEHLMFCNKD 166 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~ 166 (481)
....+|.-|...++.++|...++++..... .......++......++. +.+-.++..+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~ 117 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 117 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 455677778888888888888887653221 233334445544444332 234455555443
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.95 E-value=34 Score=28.73 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042941 342 QPTNDTYIMLIKKFSRWRQFGNVFKVWNEISE 373 (481)
Q Consensus 342 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 373 (481)
+-|...-..++..+|-.|+++.|.+=++...+
T Consensus 28 P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 28 PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555556666666666666655555544
No 257
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.76 E-value=25 Score=28.64 Aligned_cols=51 Identities=8% Similarity=-0.123 Sum_probs=21.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHh--HHHHHHHHHcCCChhhHHHHHh
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIED--FQGLLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~ 162 (481)
..+..|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 33445565555555554444333322111 0112333444555555444444
No 258
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=73.52 E-value=32 Score=29.20 Aligned_cols=143 Identities=13% Similarity=0.028 Sum_probs=59.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHH
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSRE 191 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (481)
..+..|+.+.+..+++. |..++...-.+.+...+..|+.+-+..+++.-.....++....+.+..+ + ..|+.+-
T Consensus 37 ~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A-~-~~g~~~~ 110 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA-V-DSGNMQT 110 (285)
T ss_dssp HHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH-H-HTTCHHH
T ss_pred HHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH-H-HcCCHHH
Confidence 33445666555444433 3222221112234445556666666555554221112222233333333 3 4566554
Q ss_pred HHHHHHHHHhcCCcccHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChHHHHHHHH
Q 042941 192 AERVWMEMSQRGICYDVV---SFSCIISCYSKARNLHKVLRLFDQMKRMGIEC-DRKVYNAVIHALAKGRLVKDAISLMK 267 (481)
Q Consensus 192 a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (481)
+..+++ .|..++.. -+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|..+-+..+++
T Consensus 111 v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 111 VKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 444433 34333321 112334444555554433 3333333222 11122233444455666665555544
Q ss_pred H
Q 042941 268 S 268 (481)
Q Consensus 268 ~ 268 (481)
.
T Consensus 183 ~ 183 (285)
T 3kea_A 183 Y 183 (285)
T ss_dssp H
T ss_pred c
Confidence 4
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.17 E-value=20 Score=24.70 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHH--HHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHH
Q 042941 116 VHDVGRAINAFYAYKRFKFAVGIEDFQGL--LSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAE 193 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 193 (481)
....++|..+-+.+...+ +..+ ..+ +..+.+.|++++|..+.+... .||...|-.+... +.|..+++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~---~~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~---rlGl~s~le 88 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG---QDEA-ARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCEW---HLGLGAALD 88 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHH-HHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH---HTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHH-HHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH---hcccHHHHH
Confidence 345788888888777654 2222 223 345677888888888775543 6888888877765 778888888
Q ss_pred HHHHHHHhcC
Q 042941 194 RVWMEMSQRG 203 (481)
Q Consensus 194 ~~~~~~~~~g 203 (481)
.-+.++...|
T Consensus 89 ~rL~~la~sg 98 (115)
T 2uwj_G 89 RRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHhCC
Confidence 8887777665
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.73 E-value=55 Score=29.93 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHH--
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRG--ICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRM---GIECDRKVY-- 246 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~-- 246 (481)
+...+...|. +.|+++.|.+.|.++.... ...-...+-..++.+...+++..+...+...... +-.|+....
T Consensus 133 ~~~~la~~~~-~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYA-QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHH-HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4555666666 6777777777777666542 2222345555666677777777777766665432 111221110
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 247 NAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 0111122345666666666655543
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.43 E-value=21 Score=24.63 Aligned_cols=78 Identities=12% Similarity=-0.094 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHhHHHHH--HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHH
Q 042941 116 VHDVGRAINAFYAYKRFKFAVGIEDFQGLL--SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAE 193 (481)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 193 (481)
....++|..+-+.+...+ +..+ ..+| ..+.+.|++++|..+.+... .||...|-.+... +.|..+++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~---~~E~-v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~---rlGl~s~le 89 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG---EEEA-VQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCEY---RLGLGSALE 89 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH---HHTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCC---cHHH-HHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH---hcccHHHHH
Confidence 345778888877777654 2222 2233 45677888888888876543 5788888877765 778888888
Q ss_pred HHHHHHHhcC
Q 042941 194 RVWMEMSQRG 203 (481)
Q Consensus 194 ~~~~~~~~~g 203 (481)
.-+.++...|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 8777776664
No 262
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=71.29 E-value=50 Score=28.51 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 042941 105 TLLILIRRYCAVHDVGRAINAFYAYK 130 (481)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~ 130 (481)
....++.-|...|+.++|...++++.
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34567777888888888888888764
No 263
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=71.16 E-value=44 Score=29.06 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=23.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHH
Q 042941 70 TMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAF 126 (481)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~ 126 (481)
..+..-++.|+.+-+..+++ .|..|+..+...-.+.+...+..|+.+-+.-++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll 79 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 34444456777665555554 344443221111011233345566655444333
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.62 E-value=43 Score=30.66 Aligned_cols=98 Identities=7% Similarity=-0.051 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCChhhHHH-
Q 042941 210 SFSCIISCYSKARNLHKVLRLFDQMKRMG--IECDRKVYNAVIHALAKGRLVKDAISLMKSMEEK---GVAPNVVTYNS- 283 (481)
Q Consensus 210 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~- 283 (481)
+...+...|.+.|++++|.+.|.++...- ..--...+-.+++.+...+++..+...+.++... +..|+...--.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56778899999999999999999998742 2333567778899999999999999999987543 22222221111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHC
Q 042941 284 -LIKPLCKARKLDEARQAFDEMLQR 307 (481)
Q Consensus 284 -li~~~~~~g~~~~a~~~~~~m~~~ 307 (481)
-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111223468899999888876554
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.71 E-value=41 Score=26.83 Aligned_cols=59 Identities=8% Similarity=-0.161 Sum_probs=47.1
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 042941 78 VRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 78 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (481)
.+...++.++|..|...||.... +..|......+-..|++.+|..+|+.-.+.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~--AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKL--SLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44467899999999888886552 677888888888899999999999988887777644
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.97 E-value=15 Score=27.82 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 042941 362 GNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPK 416 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 416 (481)
+.+.++|..|...|+... ...|......+...|++++|.++|+.-++.+-+|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 457888888888776443 4467777777888888888888888888887777443
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.46 E-value=80 Score=29.01 Aligned_cols=191 Identities=8% Similarity=-0.014 Sum_probs=111.1
Q ss_pred CChhHHHHHHHHHhcCC-CCCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHH----HHcCC
Q 042941 79 RKFDTAWALIDEMRGGE-TGPS-LVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSA----LCRYK 152 (481)
Q Consensus 79 g~~~~a~~~~~~~~~~~-~~p~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~ 152 (481)
|+++.|++.+..+.+.. ...| .-+......++..|...|+++...+.+.-+.+.... .......+++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 67888888776665421 1111 223778888999999999999998877766543222 12222333332 22233
Q ss_pred Chh--hHHHHHhhccC---C-CCC---chHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCccc---HHhHHHHHHHH
Q 042941 153 NVQ--DAEHLMFCNKD---V-FPF---NTKSFNIILNGWCNIIGSSREAERVWMEMSQR--GICYD---VVSFSCIISCY 218 (481)
Q Consensus 153 ~~~--~a~~~~~~~~~---~-~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~ll~~~ 218 (481)
..+ .-..+.+.+.. + .-. .......|...+. ..|++.+|.+++..+... |.... ...+..-++.|
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e-~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKK-EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222 22233333221 1 111 2233456677777 889999999999887643 22111 23455667788
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 042941 219 SKARNLHKVLRLFDQMKR----MGIECD--RKVYNAVIHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 219 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (481)
...+++..|..++..+.. ....|+ ...+...+..+...+++.+|-+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888888888888887642 111222 13445566667777888877777766643
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.31 E-value=36 Score=24.98 Aligned_cols=20 Identities=15% Similarity=-0.097 Sum_probs=8.7
Q ss_pred HHHcCCChHHHHHHHHHHHH
Q 042941 252 ALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~ 271 (481)
++.+.|+++.|.+..+.+.+
T Consensus 87 g~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 87 GCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444443
No 269
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=66.28 E-value=17 Score=24.78 Aligned_cols=60 Identities=5% Similarity=0.150 Sum_probs=40.4
Q ss_pred CChhHHHHHHHhcCCCCCHHHHHHHHHHhh---cCHHH-HHHHHHHhhhCCCCCCCHHHHHHHH
Q 042941 13 HKRSEMRNKIEECGIKVSSELVSEVLSWVR---NDWEA-AFTFFLWAGKQSGYAHSTREYHTMI 72 (481)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-a~~~~~~~~~~~~~~~~~~~~~~li 72 (481)
-++..|.+++...|+.|+..++..++..|. -+.++ +.+.........|..|+....+.+=
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 388999999999999999998888888762 22222 2232222224457778887776654
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.98 E-value=18 Score=27.84 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 042941 362 GNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEPKTD 418 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 418 (481)
+.+.++|..|...|+... ...|......+-..|++.+|.++|+.-++.+-+|-...-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 457788888888777543 446777777888889999999999998888888866543
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.96 E-value=30 Score=23.86 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTM--IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~ 120 (481)
+..++|..+-+|+.... + .-...+ +..+..+|++++|..+.+.+. .|| ...|..+- -.+.|-..
T Consensus 20 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pd---lepw~ALc--e~rlGl~s 85 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG----Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPA---LEPWFALC--EWHLGLGA 85 (115)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGG---GHHHHHHH--HHHTTCHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----Cch---HHHHHHHH--HHhcccHH
Confidence 56688888888885433 3 233344 445678899999888776654 456 55555553 35678888
Q ss_pred HHHHHHHHHhhcCCCCCHHhHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
++...+.++...| .|....|.
T Consensus 86 ~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 86 ALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHH
Confidence 8888887777666 44444443
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.94 E-value=69 Score=27.71 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHH----HHHHHHhhcCCCCCHHhHHH
Q 042941 68 YHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAI----NAFYAYKRFKFAVGIEDFQG 143 (481)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~ 143 (481)
|-++..-|.+.+++++|.+++..-- ..+.+.|+...|- -+.+.+.+.+.+++......
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga------------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA------------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4444455555666666666654321 1122334443332 23444445566666666666
Q ss_pred HHHHHHcCCChh--------hHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 144 LLSALCRYKNVQ--------DAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 144 ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
++..+.....-+ .|+.+-.........++.....+...|. +.+++.+|+..|
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~H~ 157 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL-EGDFVYEAERYF 157 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHH
Confidence 666555433211 1222222221112235666677777777 777777776655
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.92 E-value=29 Score=28.21 Aligned_cols=87 Identities=8% Similarity=-0.064 Sum_probs=45.3
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh--HHHHHHHHH
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED--FQGLLSALC 149 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 149 (481)
+...++.|+.+.+..+++.+.+.|..++..+..-. +.+...+..|+.+-+..++ +.|..++... -...+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVVRLLV----TAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCC-CHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHH
Confidence 44556678888888888776666655553322222 2334445567665444443 4444433211 112333444
Q ss_pred cCCChhhHHHHHhh
Q 042941 150 RYKNVQDAEHLMFC 163 (481)
Q Consensus 150 ~~~~~~~a~~~~~~ 163 (481)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56666666666554
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.89 E-value=72 Score=27.90 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH----HHHHHHHhhcCCCCCHHhHH
Q 042941 67 EYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA----INAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~ 142 (481)
.|-++..-|.+.+++++|.+++..-- ..+.+.|+...+ .-+++.+.+.++++|.....
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~ 98 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRG 98 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34444555666777777777654321 122333444333 33334455566677766666
Q ss_pred HHHHHHHcCC
Q 042941 143 GLLSALCRYK 152 (481)
Q Consensus 143 ~ll~~~~~~~ 152 (481)
.++..+....
T Consensus 99 rL~~L~~~~~ 108 (336)
T 3lpz_A 99 KLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHhCC
Confidence 6666555443
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.57 E-value=32 Score=23.75 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTM--IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVG 120 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~ 120 (481)
+..++|..+-+|+.... + .-...+ +..+..+|++++|..+.+.+. .|| ...|..+- -.+.|-..
T Consensus 21 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pd---lepw~ALc--e~rlGl~s 86 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG----E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPD---LEPWLALC--EYRLGLGS 86 (116)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGG---GHHHHHHH--HHHHTCHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----Cch---HHHHHHHH--HHhcccHH
Confidence 55688888888885433 3 233334 345668888888888877665 456 55555553 34677777
Q ss_pred HHHHHHHHHhhcCCCCCHHhHH
Q 042941 121 RAINAFYAYKRFKFAVGIEDFQ 142 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~ 142 (481)
++...+.++...| .|....|.
T Consensus 87 ~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 87 ALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHH
Confidence 7777777776665 34444443
No 276
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=63.82 E-value=50 Score=25.72 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhH
Q 042941 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDT 83 (481)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (481)
.+.+|+....+..+|...|.+.|+ ++..+..+|..+ ...|+-.|..-..+.+....+.|.+ .
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~kg~--~~~~ie~vl~~L---------------~~~g~ldD~rfA~~~vr~~~~~~~~-G 85 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSLDI--HEDYISEIINKL---------------IDLDLINDKNYAESYVRTMMNTSDK-G 85 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGGTC--CHHHHHHHHHHH---------------HHTTSSCHHHHHHHHHHHHHHHCCC-C
T ss_pred HHHHhccccccHHHHHHHHHHcCC--CHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHHcccc-c
Confidence 456777777777888888877764 344555555544 2334433444444445555443332 2
Q ss_pred HHHHHHHHhcCCCCCC
Q 042941 84 AWALIDEMRGGETGPS 99 (481)
Q Consensus 84 a~~~~~~~~~~~~~p~ 99 (481)
...+-.++..+||.++
T Consensus 86 ~~~I~~eL~~KGI~~~ 101 (177)
T 3e3v_A 86 PKVIKLNLSKKGIDDN 101 (177)
T ss_dssp HHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3556667777777543
No 277
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.76 E-value=43 Score=24.95 Aligned_cols=22 Identities=14% Similarity=-0.112 Sum_probs=10.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHc
Q 042941 251 HALAKGRLVKDAISLMKSMEEK 272 (481)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (481)
-++.+.|++++|.++.+.+.+.
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHhc
Confidence 3444555555555555554443
No 278
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.29 E-value=53 Score=24.82 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=10.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 042941 248 AVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~ 269 (481)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 279
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=59.53 E-value=70 Score=25.99 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhH
Q 042941 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDT 83 (481)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (481)
.+.+|+....+..+|...|.+.|. ++..+..+|..+ ...|+-.|..-..+.+....+.+.+ .
T Consensus 67 Al~~Ls~r~~S~~EL~~KL~~kg~--~~e~i~~vl~~L---------------~~~g~ldD~rfA~~~v~~~~~~~~~-G 128 (221)
T 3d5l_A 67 MLDYLSYQMRTESDIVKKLKEIDT--PEEFVEPILKKL---------------RGQQLIDDHAYAASYVRTMINTDLK-G 128 (221)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTC--CHHHHHHHHHHH---------------HHTTCCCHHHHHHHHHHHHHHHCCC-C
T ss_pred HHHHhccccccHHHHHHHHHhcCC--CHHHHHHHHHHH---------------HHcCCCCHHHHHHHHHHHHHHhccc-c
Confidence 455666666677777777776664 445555555544 2233333333334444444331111 2
Q ss_pred HHHHHHHHhcCCCCCC
Q 042941 84 AWALIDEMRGGETGPS 99 (481)
Q Consensus 84 a~~~~~~~~~~~~~p~ 99 (481)
...+-.++..+|+.++
T Consensus 129 ~~~I~~eL~~KGI~~~ 144 (221)
T 3d5l_A 129 PGIIRQHLRQKGIGES 144 (221)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4555666777776543
No 280
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=59.37 E-value=58 Score=25.01 Aligned_cols=62 Identities=2% Similarity=-0.093 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-Cccc-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042941 174 SFNIILNGWCNIIGSSREAERVWMEMSQRG-ICYD-------VVSFSCIISCYSKARNLHKVLRLFDQMKR 236 (481)
Q Consensus 174 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 236 (481)
.+-.-+..+. ..+.++.|+-+.+.+.... ..|+ ..++..+..++...|++..|...|++..+
T Consensus 22 ~l~dqik~L~-d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMA-AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445566666 7788888877776654321 1222 12455666778888888888888888654
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.75 E-value=1.3e+02 Score=28.99 Aligned_cols=87 Identities=9% Similarity=-0.038 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 042941 59 SGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 59 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (481)
.+.+.....-+.-+..+.+.+++...+..+.. .|+ +...-.....+....|+..+|......+=..| ...+
T Consensus 66 ~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~------~p~--~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p 136 (618)
T 1qsa_A 66 PTLPPARTLQSRFVNELARREDWRGLLAFSPE------KPG--TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQP 136 (618)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS------CCS--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCC
T ss_pred CCChhHHHHHHHHHHHHHhCCCHHHHHHhccC------CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCc
Confidence 44333444445556666667776666654432 122 24555556666666777666666555544333 2344
Q ss_pred HhHHHHHHHHHcCCCh
Q 042941 139 EDFQGLLSALCRYKNV 154 (481)
Q Consensus 139 ~~~~~ll~~~~~~~~~ 154 (481)
..+..++..+.+.|.+
T Consensus 137 ~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 137 NACDKLFSVWRASGKQ 152 (618)
T ss_dssp THHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHCCCC
Confidence 4555666666655543
No 282
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.34 E-value=95 Score=27.14 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=15.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 042941 387 IHALFLNGKLEEAHQYYMEMKE 408 (481)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~m~~ 408 (481)
+--|.-.++...|..+++...+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3346677888888887776654
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=58.03 E-value=69 Score=25.43 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042941 284 LIKPLC---KARKLDEARQAFDEMLQRGISPTIRTYHAFLDII 323 (481)
Q Consensus 284 li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 323 (481)
+|+++. +..+++.|+-++-.|.+.| .|....-..++-+.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 444443 3567778888888888777 54444333444443
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.05 E-value=1.1e+02 Score=27.51 Aligned_cols=167 Identities=8% Similarity=-0.022 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcC-CCCCCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCCHHhH--
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGG-ETGPSLVTKQTLLILIRRYCAV-HDVGRAINAFYAYKRFKFAVGIEDF-- 141 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 141 (481)
.+...+...|.+.|+.++..+++.....- +.-|..-+......++..+... +..+.-.++..+..+..- -...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34567778888888888888888776431 1112222345556666666553 333333333333332110 011122
Q ss_pred ----HHHHHHHHcCCChhhHHHHHhhccCCCC------CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCcccHH
Q 042941 142 ----QGLLSALCRYKNVQDAEHLMFCNKDVFP------FNTKSFNIILNGWCNIIGSSREAERVWMEMSQR--GICYDVV 209 (481)
Q Consensus 142 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~ 209 (481)
..++..|...|++.+|..++..+...+. .-..++-.-+..|. ..+++.++...+...... .+.+++.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2577788888888888777765422111 11223455556666 778888888777765432 1212222
Q ss_pred hHHH----HHHHHH-hcCCHHHHHHHHHHH
Q 042941 210 SFSC----IISCYS-KARNLHKVLRLFDQM 234 (481)
Q Consensus 210 ~~~~----ll~~~~-~~~~~~~a~~~~~~~ 234 (481)
.-.. -...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2111 112344 677777777666554
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.66 E-value=55 Score=23.86 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=11.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 042941 248 AVIHALAKGRLVKDAISLMKSM 269 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~ 269 (481)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.35 E-value=62 Score=24.42 Aligned_cols=55 Identities=5% Similarity=-0.078 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI 138 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (481)
+++.++|..|...||.... +..|......+-..|++.+|..+|+.-.+.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~--AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLS--SPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3488899999888886552 667778888888889999999999888877766643
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.63 E-value=25 Score=28.56 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 362 GNVFKVWNEISENGNGPD-RSSYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415 (481)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 415 (481)
+.+.++|..|...|+.-. ...|......+...|++.+|..+|+.-++.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 578889999988877544 456778888888999999999999998888877744
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.35 E-value=29 Score=27.21 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=5.0
Q ss_pred ccCChhHHHHHH
Q 042941 77 KVRKFDTAWALI 88 (481)
Q Consensus 77 ~~g~~~~a~~~~ 88 (481)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444333
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.95 E-value=1e+02 Score=26.59 Aligned_cols=66 Identities=8% Similarity=-0.043 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHH----------------HHHHC--CCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 042941 343 PTNDTYIMLIKKFSRWRQFGNVFKVWN----------------EISEN--GNGPDRSSY-TALIHALFLNGKLEEAHQYY 403 (481)
Q Consensus 343 ~~~~~~~~l~~~~~~~g~~~~a~~~~~----------------~~~~~--~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~ 403 (481)
-++.....+...|.+.|++.+|...|- ...+. |.+-+...| ...+--|.-.|+...|..+|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 356666677777777777777766442 11111 221112222 12233466778999999988
Q ss_pred HHHHH
Q 042941 404 MEMKE 408 (481)
Q Consensus 404 ~~m~~ 408 (481)
+...+
T Consensus 212 ~~f~~ 216 (312)
T 2wpv_A 212 DIFLE 216 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 290
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.61 E-value=68 Score=24.37 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=66.9
Q ss_pred hHHHHHHhcCCChhHHHHHHHhc-----CCC---CCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 042941 3 TLVDILREFSHKRSEMRNKIEEC-----GIK---VSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAI 74 (481)
Q Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 74 (481)
..+.+|.....+..+|...|... |.. .++..+..+|..+ ...|+-.|..-..+.+..
T Consensus 10 ~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l---------------~~~g~ldD~rfA~~~v~~ 74 (159)
T 3c1d_A 10 RAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWC---------------HEHGYLDDSRFVARFIAS 74 (159)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHH---------------HHTTSCCHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHH---------------HHcCCcCHHHHHHHHHHH
Confidence 35677888888889999998874 411 3455555555554 334444444444555555
Q ss_pred HhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCC
Q 042941 75 LGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYK 152 (481)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 152 (481)
..+.| .....+-.++..+||.++ .....+..+ .....+.|..+...-.....+++......++..+.+.|
T Consensus 75 ~~~~g--~G~~~I~~eL~~KGI~~~-----~i~~al~~~-~~d~~~~a~~l~~kk~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 75 RSRKG--YGPARIRQELNQKGISRE-----ATEKAMREA-DIDWAALARDQATRKYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHTT--CCHHHHHHHHHHTTCCHH-----HHHHHHHHH-CCCHHHHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HHhCC--ccHHHHHHHHHHcCCCHH-----HHHHHHHHc-CHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 55444 235567778888888544 222222222 11223445555543322211233344555666666655
No 291
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.52 E-value=71 Score=25.29 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042941 290 KARKLDEARQAFDEMLQRGISPTIRTYHAFLDII 323 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 323 (481)
+..+++.|+-++-.|++.|-.|....-..++-+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3567777777777777777655544444444443
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.57 E-value=22 Score=28.83 Aligned_cols=16 Identities=0% Similarity=-0.157 Sum_probs=7.4
Q ss_pred HHHhcCCHHHHHHHHH
Q 042941 287 PLCKARKLDEARQAFD 302 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~ 302 (481)
..++.|+.+-+..+++
T Consensus 216 ~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHH
Confidence 3344555554444443
No 293
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=53.45 E-value=85 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 283 SLIKPLC---KARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 283 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
-+|+++. +..+++.|+-++-.|++.|-.|....-..++-+.-.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 3555554 357788888888888887766555444444444433
No 294
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=53.00 E-value=2e+02 Score=29.38 Aligned_cols=330 Identities=8% Similarity=-0.134 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHH-HHHH-HHHhcCCCCCCcccHHH
Q 042941 28 KVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTA-WALI-DEMRGGETGPSLVTKQT 105 (481)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~-~~~~~~~~~p~~~~~~~ 105 (481)
.++...+...|.......-..++.......... .-..+-.++..++...|--.+. .... +.+.+. . + ..-
T Consensus 304 ~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~--s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~---~~k 375 (963)
T 4ady_A 304 LPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKF--SLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA--Q-N---WAK 375 (963)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTS--HHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-T---HHH
T ss_pred CChHHHHHHHHHhccccchhhHHHHHhhhcchh--hHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc--c-h---HHH
Confidence 345677888887764322222222232222111 1234455677888888754322 2222 233332 1 2 333
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHH--HHHHHHHcCCChhhHHHHHhh-ccCCC-------CCchHh
Q 042941 106 LLI-LIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQ--GLLSALCRYKNVQDAEHLMFC-NKDVF-------PFNTKS 174 (481)
Q Consensus 106 ~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~-~~~~~-------~~~~~~ 174 (481)
+.+ .--+.+..|+.++++..+......+...+..+-. .+.-.....|..+++..++.. +.... .+....
T Consensus 376 ~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 376 FTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 333 3346777899999999998877532123433322 233334455555567766654 22110 011122
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCcccHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042941 175 FNIILNGWCNIIGS-SREAERVWMEMSQRGICYDVVSFS--CIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIH 251 (481)
Q Consensus 175 ~~~l~~~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (481)
-..+.-+++ -.|. -+++.+.+..+....- +...... ++...+.-.|+.+....++..+.+.. .-+..-...+.-
T Consensus 456 gAaLGLGla-~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgL 532 (963)
T 4ady_A 456 GASLGIGLA-AMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHHHH-STTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHH
Confidence 222323332 2232 2345555555544311 1111122 23344556788888888888776642 212222233334
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVTYN--SLIKPLCKARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIR----- 324 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----- 324 (481)
++...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+......++..+... ++...-...+-+++
T Consensus 533 Gll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSS
T ss_pred HhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccC
Confidence 455789999999998888764 222222222 2344677889988888899988875 23332233333322
Q ss_pred chhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 042941 325 TGEEVFGLLESMRKMGCQPTNDTYIMLIKKFSRWRQF-GNVFKVWNEISE 373 (481)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 373 (481)
..+.+.+++..+.+.+ .|....-..+.-+....|.. .++.+++..+..
T Consensus 609 ~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 2223355555444433 34433333344444444544 567777777765
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.50 E-value=70 Score=26.55 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=10.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC
Q 042941 290 KARKLDEARQAFDEMLQRGISP 311 (481)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p 311 (481)
..++.....++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444444445555555555443
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.32 E-value=1.3e+02 Score=26.71 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 042941 347 TYIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK--LEEAHQYYMEMKEKQLLPEPKTDELLQD 423 (481)
Q Consensus 347 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 423 (481)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+...|+-+.......+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3577888899999999999999888642221 23344555556555443 4567888888888776665555444433
No 297
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=52.12 E-value=58 Score=28.22 Aligned_cols=16 Identities=0% Similarity=-0.043 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHH
Q 042941 112 RYCAVHDVGRAINAFY 127 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~ 127 (481)
..++.|+.+....++.
T Consensus 30 ~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 30 EAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHTCHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3445566655555543
No 298
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.94 E-value=27 Score=28.38 Aligned_cols=212 Identities=6% Similarity=-0.031 Sum_probs=89.0
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHh--HHHHHHHHH
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIED--FQGLLSALC 149 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 149 (481)
+...+..|+.+-+ +.+.+.|..++..+..-.+ .+...+..|+.+.+..++ +.|..++... -...+...+
T Consensus 15 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVDIC----HMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLI----KAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHH----TTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHHHH----HHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHH
Confidence 3344455665433 3334445444432222122 233344556665544444 3343332211 112334445
Q ss_pred cCCChhhHHHHHhhcc-CCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHh--HHHHHHHHHhcCCHHH
Q 042941 150 RYKNVQDAEHLMFCNK-DVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVS--FSCIISCYSKARNLHK 226 (481)
Q Consensus 150 ~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~ 226 (481)
..|+.+-+..+++.-. .....+....+.+..+ + ..|+.+-+. .+.+.|..++... -.+.+...+..|+.+
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A-~-~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~- 158 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA-T-EYKHVDLVK----LLLSKGSDINIRDNEENICLHWAAFSGCVD- 158 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHH-H-HTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHCCHH-
T ss_pred HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHH-H-HcCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHCCCHH-
Confidence 5667666666655431 1111222223333333 3 456654433 3344444433211 112233344455544
Q ss_pred HHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHH
Q 042941 227 VLRLFDQMKRMGIECDRKV--YNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVT--YNSLIKPLCKARKLDEARQAFD 302 (481)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 302 (481)
+++.+.+.|..++... -.+.+...++.|+.+- .+.+.+.|..++... -.+.+...+..|+...+.++.+
T Consensus 159 ---~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 159 ---IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDC----VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp ---HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhH----HHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444554433211 1123333445555543 334444554443221 1123333455666777777776
Q ss_pred HHHH
Q 042941 303 EMLQ 306 (481)
Q Consensus 303 ~m~~ 306 (481)
.+.+
T Consensus 232 ~l~d 235 (237)
T 3b7b_A 232 ALQD 235 (237)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6654
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.88 E-value=64 Score=25.14 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=33.5
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHH
Q 042941 113 YCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREA 192 (481)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 192 (481)
.+..|+.+.+..++..-...--..+..-.+ .+...+..|+.+-+..+++.-......+....+.+..+ + ..|+.+-+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~-~~~~~~~~ 88 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA-G-AQGRTEIL 88 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-H-HTTCHHHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-H-HcCCHHHH
Confidence 345667666666654321000011221122 33334455666655555554221111222223333333 3 45666555
Q ss_pred HHHH
Q 042941 193 ERVW 196 (481)
Q Consensus 193 ~~~~ 196 (481)
..++
T Consensus 89 ~~Ll 92 (201)
T 3hra_A 89 AYML 92 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 300
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=49.70 E-value=84 Score=23.96 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCCHHHHHHHHHHh
Q 042941 4 LVDILREFSHKRSEMRNKIEECGIKVSSELVSEVLSWV 41 (481)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 41 (481)
.+.+|+....+..+|...|.+.|+ ++..+..+|..+
T Consensus 23 Al~~Ls~r~~s~~EL~~KL~~kg~--~~e~Ie~vl~~l 58 (162)
T 3dfg_A 23 ALGLLVHREHSKKELNRKLQARGI--EPEAAQAAVERL 58 (162)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred HHHHhhchhhhHHHHHHHHHhcCC--CHHHHHHHHHHH
Confidence 456677777777777777777765 344555555544
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.47 E-value=85 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=11.6
Q ss_pred HHHHHHHcCCChhhHHHHHhhcc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNK 165 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~ 165 (481)
.++.-|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444555555555555555443
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.95 E-value=41 Score=27.31 Aligned_cols=43 Identities=7% Similarity=-0.008 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCCCCC-HHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 121 RAINAFYAYKRFKFAVG-IEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 121 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
....+|..|...|+--. +..|......+-..|++.+|..+|..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555554444322 33455555555555666666665554
No 303
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.43 E-value=1.7e+02 Score=26.84 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhc--------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHc
Q 042941 188 SSREAERVWMEMSQR--------GICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGI-E---CDRKVYNAVIHALAK 255 (481)
Q Consensus 188 ~~~~a~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~li~~~~~ 255 (481)
..++...+++..... ++..+......+... ..|+..++..+++.+..... . ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 455666666665442 234455566655554 46778888877777665321 0 011122211111111
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 042941 256 GRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLC---KARKLDEARQAFDEMLQRGISPTIRTYHAFLDIIRT 325 (481)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 325 (481)
... ....+...+.-+++++. +.++.+.|+.++..|.+.|..|....-..++.+...
T Consensus 244 ~~~--------------~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 244 RSA--------------RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp CCC--------------C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hhh--------------ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 100 00001122223444443 457899999999999998877655444444444433
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.30 E-value=94 Score=23.81 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHH
Q 042941 82 DTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIE 139 (481)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (481)
+.+.++|..|...||.... +..|......+-..|++.+|..+|..-.+.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~--AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSL--AQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3477788888888876552 6677777777888888999998888888777666543
No 305
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=46.73 E-value=1.6 Score=19.54 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.2
Q ss_pred cchhhccCccccchhcccc
Q 042941 458 QDREFLQQPETRRVVRHQG 476 (481)
Q Consensus 458 ~~~~~~~a~~~r~~~~~~~ 476 (481)
+..+|++|..+|.+|+++.
T Consensus 2 qmnrydqaatlrakmekre 20 (23)
T 3syn_E 2 QMNRYDQAATLRAKMEKRE 20 (26)
T ss_pred ccchHHHHHHHHHHHHHHh
Confidence 4577888999998888764
No 306
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=46.53 E-value=70 Score=22.91 Aligned_cols=80 Identities=9% Similarity=0.024 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 382 SYTALIHALFLNGK-------LEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 382 ~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
.+..+...+.+.|+ -.++..+.+.|+..+...+......+...+.+.....+.++.+-....+.+..|.-+..
T Consensus 20 mlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~~R~GGYTRI~K 99 (120)
T 3r8s_N 20 MFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILK 99 (120)
T ss_dssp HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTTTCCSCCEEEEE
T ss_pred HHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 34556666777775 35677788888888888888888888888888888889999999999999999998888
Q ss_pred ccccchh
Q 042941 455 KSDQDRE 461 (481)
Q Consensus 455 ~~~~~~~ 461 (481)
+-.+.|+
T Consensus 100 ~~~R~GD 106 (120)
T 3r8s_N 100 CGFRAGD 106 (120)
T ss_dssp EEECTTT
T ss_pred CCCCCCC
Confidence 7666664
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.35 E-value=1.3e+02 Score=26.27 Aligned_cols=13 Identities=8% Similarity=0.255 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhc
Q 042941 381 SSYTALIHALFLN 393 (481)
Q Consensus 381 ~~~~~l~~~~~~~ 393 (481)
..|..++..|...
T Consensus 273 ~~~~pll~~~~~~ 285 (339)
T 1ug3_A 273 KARAKLLQKYLCD 285 (339)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCC
Confidence 3577788888744
No 308
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=46.10 E-value=49 Score=20.19 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=32.9
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHhhcCHHHHHHHHHHhhhCCCCCCC
Q 042941 16 SEMRNKIEECGIKVSSELVSEVLSWVRNDWEAAFTFFLWAGKQSGYAHS 64 (481)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 64 (481)
++-...+++.=+..+..++..+|.++.++.+.|+..+..+ ...+..|+
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m-~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM-GEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS-SCCCCSCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC-cCCCCCCC
Confidence 3444455555456788888888888888888888888877 34444444
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.77 E-value=1.4e+02 Score=28.04 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHH----HHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQG----LLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNII 178 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 178 (481)
...++.+++.|...+.++.|..+..+..-.....+..-+.. +.+.+.-.+++.+|.+.|...-...|++.......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH
Q 042941 179 LNGWCNIIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVI----HALA 254 (481)
Q Consensus 179 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~ 254 (481)
..++- .-+.-.+.. |--|+...+ .......++.-|-.+.+.=-..|...|...+ ..+.
T Consensus 311 ~~a~K---------~lI~V~LLl-G~iP~r~lf--------~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~ 372 (523)
T 4b4t_S 311 QQSNK---------LHCCIQLLM-GDIPELSFF--------HQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLL 372 (523)
T ss_dssp HHHHH---------HHHHHHHHH-TCCCCHHHH--------TTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHH---------HHHhHHhhc-CCCCChHHh--------hchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceec
Q ss_pred cCCChHHHHHHHHHHHHcCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCC
Q 042941 255 KGRLVKDAISLMKSMEEKGVAPNVVTYNSL----IKPLCKARKLDEARQAFDEMLQRGI 309 (481)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~ 309 (481)
+.|.+.-..++-....+.++.-=..+|+.+ |..-......++|+.+...|+..|.
T Consensus 373 ~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 373 KDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
No 310
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.70 E-value=1.7e+02 Score=26.32 Aligned_cols=283 Identities=11% Similarity=0.104 Sum_probs=149.0
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCCC-------CHHHHHHHHHHhh---cC----HHHHHHHHHHhhhCCCCCCCHHHHHH
Q 042941 5 VDILREFSHKRSEMRNKIEECGIKV-------SSELVSEVLSWVR---ND----WEAAFTFFLWAGKQSGYAHSTREYHT 70 (481)
Q Consensus 5 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~~ 70 (481)
.+++.+.+ .+.++...+......+ +...+..++..+. +. .+...+.++|.....-.-.....=..
T Consensus 26 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~k 104 (394)
T 3txn_A 26 GELYKQEG-KAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEAR 104 (394)
T ss_dssp HHHHHHHT-CHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 4455655555433221 3444566666653 22 24566777887533211111112336
Q ss_pred HHHHHhccCChhHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCCHHhHHH---
Q 042941 71 MIAILGKVRKFDTAWALIDEMRGG--ETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRF--KFAVGIEDFQG--- 143 (481)
Q Consensus 71 li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~--- 143 (481)
++..|...|++.+|..++..+.+. .......-...+..-++.|...+++.++...+...... .+.+++.....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 788999999999999988887662 11111222456667778889999999999999887632 22244433222
Q ss_pred -HHHHHH-cCCChhhHHHHHhhcc----CCCCC---chHhHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCcccHHhHHH
Q 042941 144 -LLSALC-RYKNVQDAEHLMFCNK----DVFPF---NTKSFNIILNGWCNIIGSSREAERVWM-EMSQRGICYDVVSFSC 213 (481)
Q Consensus 144 -ll~~~~-~~~~~~~a~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~ 213 (481)
-...+. ..+++..|...|-+.- +...| +...|..+... . .++..+...++. .....-..|+...+..
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 223455 7899999988875532 11111 12233333332 2 233222222221 1111112355555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-----CCCChhhHHHHHHHH
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKG-----VAPNVVTYNSLIKPL 288 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~ 288 (481)
++.+| ..+++.+...++..... .+..|......+ ..+++.+...+ .+-+..++..+...+
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l 326 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAHVAESI 326 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHHHHHHH
Confidence 66654 46677777777665433 234454422111 12222222111 123555666666554
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 042941 289 CKARKLDEARQAFDEMLQRG 308 (481)
Q Consensus 289 ~~~g~~~~a~~~~~~m~~~~ 308 (481)
.- ..++++..+.+|+..|
T Consensus 327 ~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 327 QL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp TC--CHHHHHHHHHHHHHTT
T ss_pred Cc--CHHHHHHHHHHHHHCC
Confidence 32 6788888888888775
No 311
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=45.41 E-value=90 Score=24.99 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=30.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 249 VIHALAKGRLVKDAISLMKSMEEKGVAP---------NVVTYNSLIKPLCKARKLDEARQAFDEM 304 (481)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (481)
.+...+..|+.+.+..+++.+.+.|..+ |..-.+. +...+..|+.+-+..+++.-
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 3445566677777777777777766533 2222232 33344566666655555543
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.38 E-value=15 Score=30.67 Aligned_cols=52 Identities=12% Similarity=-0.127 Sum_probs=25.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCHH-------hHHHHHHHHH--cCCChhhHHHHHhh
Q 042941 112 RYCAVHDVGRAINAFYAYKRFKFAVGIE-------DFQGLLSALC--RYKNVQDAEHLMFC 163 (481)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~ 163 (481)
..++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3445566666666666555544443322 2233333332 45666555555543
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.88 E-value=46 Score=28.14 Aligned_cols=156 Identities=8% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhc
Q 042941 110 IRRYCAVHDVGRAINAFYAYKRFKFAVGI---EDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNII 186 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (481)
+...+..|+.+-+..+++ .|..++. .-.+ .+...+..|+.+-+..+++.-......+...+...+...+ ..
T Consensus 66 L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~-~~ 139 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLF----SGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV-ML 139 (285)
T ss_dssp HHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH-HT
T ss_pred HHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH-Hc
Confidence 334455566554444443 3433322 1122 2333445566666665555411111112222122233334 55
Q ss_pred CCHHHHHHHHHHHHhcCCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 042941 187 GSSREAERVWMEMSQRGICY-DVVSFSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISL 265 (481)
Q Consensus 187 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (481)
|+.+-+. .+.+.|..+ +...-.+.+...+..|..+-+.-+++.-..... .+..-.+..+...+..|+. ++
T Consensus 140 ~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~ 210 (285)
T 3kea_A 140 NDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EM 210 (285)
T ss_dssp TCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HH
T ss_pred CCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HH
Confidence 6654433 333444332 111223344455666776655555544332221 1111122222333344543 34
Q ss_pred HHHHHHcCCCCChhh
Q 042941 266 MKSMEEKGVAPNVVT 280 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~ 280 (481)
.+.+.+.|..++...
T Consensus 211 v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 211 LQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHTTSCBCSTTTT
T ss_pred HHHHHHcCCCCCCCC
Confidence 455556666665554
No 314
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=42.45 E-value=1.3e+02 Score=24.08 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=36.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN-----LHKVLRLFDQMKRMGIE 240 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 240 (481)
+..+.+.|+-.+-+|.+.|..|.-..-..++.+.-.-|. ...|...++.....|.+
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 457888888888888888777666655555555554443 34555566666666643
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.11 E-value=97 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=11.7
Q ss_pred HHHHHHHcCCChhhHHHHHhhcc
Q 042941 143 GLLSALCRYKNVQDAEHLMFCNK 165 (481)
Q Consensus 143 ~ll~~~~~~~~~~~a~~~~~~~~ 165 (481)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.71 E-value=38 Score=24.70 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=29.6
Q ss_pred hHHHHHHhcC--CChhHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 042941 3 TLVDILREFS--HKRSEMRNKIEECGIKVSSELVSEVLSWVR 42 (481)
Q Consensus 3 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 42 (481)
.|+++|.+.. -+|.+|...+++.+..++..|+-..|..+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 4667776554 278888888888777788888887777774
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.49 E-value=38 Score=27.37 Aligned_cols=13 Identities=8% Similarity=-0.158 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHH
Q 042941 114 CAVHDVGRAINAF 126 (481)
Q Consensus 114 ~~~~~~~~a~~~~ 126 (481)
+..|+.+.+..++
T Consensus 17 ~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 17 TQYGIYERCRELV 29 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCChHHHHHHH
Confidence 3444444443333
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.18 E-value=1.7e+02 Score=26.97 Aligned_cols=112 Identities=9% Similarity=-0.027 Sum_probs=69.6
Q ss_pred cCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHH
Q 042941 43 NDWEAAFTFFLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRA 122 (481)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a 122 (481)
+.++.|+++-.. .|++--...|..-...+...|++++|-++--..++- +--+ +.+.+.+-..-...|...-.
T Consensus 343 ~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt---~~Ti~rFk~vp~~pgq~spl 414 (494)
T 1bpo_A 343 QNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRT---PDTIRRFQSVPAQPGQTSPL 414 (494)
T ss_dssp CCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCS---HHHHHHHTTSCCCTTSCCHH
T ss_pred CCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccC---HHHHHHHhcCCCCCCCCCHH
Confidence 666777666543 444445566777778888888998888887776552 3223 66665554444444555666
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhh
Q 042941 123 INAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 163 (481)
+..|..+.+.| +.+..---.+++.-...|+.+..++++.+
T Consensus 415 L~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 415 LQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 77777777665 34544334466666666776666666654
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.00 E-value=1e+02 Score=22.87 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042941 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (481)
.-.|.++++.+.+.+...+..|.---+..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 344555555554444333443333333333333
No 320
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=40.66 E-value=1.3e+02 Score=23.38 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--C--------------C-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 354 KFSRWRQFGNVFKVWNEISENGNG--P--------------D-RSSYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~~--~--------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
+|-+..++..|...++.+....+. | | ...|+.+...|.+.|+.++|+..+..-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 466778888888888888753332 1 2 446777788888999999999988754
No 321
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=39.41 E-value=49 Score=24.48 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=5.2
Q ss_pred ccCChhHHHHHHH
Q 042941 77 KVRKFDTAWALID 89 (481)
Q Consensus 77 ~~g~~~~a~~~~~ 89 (481)
+.|+.+.+..+++
T Consensus 11 ~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 11 ARGDVQEVRRLLH 23 (156)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3344444444433
No 322
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.52 E-value=1.6e+02 Score=24.09 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042941 215 ISCYSKARNLHKVLRLFDQMKRM--GIEC----DRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPL 288 (481)
Q Consensus 215 l~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 288 (481)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44556666677776666655432 1221 111112222222222222233334444422 33455556666777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042941 289 CKARKLDEARQAFDEML 305 (481)
Q Consensus 289 ~~~g~~~~a~~~~~~m~ 305 (481)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777776543
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.45 E-value=1.2e+02 Score=22.49 Aligned_cols=39 Identities=10% Similarity=-0.178 Sum_probs=17.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhH
Q 042941 392 LNGKLEEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQF 430 (481)
Q Consensus 392 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 430 (481)
..+..-.|.++++.+.+.+...+..|.--.+..+...|.
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 333444455555555444444444444434444444433
No 324
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.05 E-value=41 Score=24.88 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred hHHHHHHhcCC--ChhHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 042941 3 TLVDILREFSH--KRSEMRNKIEECGIKVSSELVSEVLSWVR 42 (481)
Q Consensus 3 ~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 42 (481)
.|+++|.+.+. +|.+|...+++.+..++..++-..|..+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~ 59 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLA 59 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 45666666543 67888888877777777777777777763
No 325
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=37.16 E-value=36 Score=22.14 Aligned_cols=57 Identities=4% Similarity=0.123 Sum_probs=37.1
Q ss_pred CChhHHHHHHHhcCCCCCHHHHHHHHHHhh---cCH-HHHHHHHHHhhhCCCCCCCHHHHH
Q 042941 13 HKRSEMRNKIEECGIKVSSELVSEVLSWVR---NDW-EAAFTFFLWAGKQSGYAHSTREYH 69 (481)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~a~~~~~~~~~~~~~~~~~~~~~ 69 (481)
-++.++.+.+...|+.++..++..++..|. .+. +.+.++...+....|..|+....+
T Consensus 3 vs~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~~L~ 63 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILN 63 (78)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTTTTT
T ss_pred cCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 467889999999999999988888877762 222 223333333334466677766543
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.98 E-value=1.3e+02 Score=22.35 Aligned_cols=60 Identities=5% Similarity=-0.072 Sum_probs=32.1
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCC
Q 042941 90 EMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKN 153 (481)
Q Consensus 90 ~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 153 (481)
.+.+.|++++ + .-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-
T Consensus 12 ~l~~~g~r~T---~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRIT---P-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCC---H-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCC---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3445555554 2 2223344444445566677777777665555555555555555655554
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.88 E-value=70 Score=24.40 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=18.7
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcC
Q 042941 52 FLWAGKQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGG 94 (481)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 94 (481)
+....+..|++.+.. =..++..+...+..-.|.++++.+.+.
T Consensus 20 ~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 20 FKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 333334444444332 233444444444455555555555443
No 328
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.35 E-value=2.1e+02 Score=24.65 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhHHH
Q 042941 348 YIMLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK--LEEAHQYYMEMKEKQLLPEPKTDE 419 (481)
Q Consensus 348 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~ 419 (481)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+.+.|+-+......
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 456788888889999999999888642111 12344445555555433 456777888888777655554433
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.24 E-value=1.3e+02 Score=22.40 Aligned_cols=60 Identities=8% Similarity=0.124 Sum_probs=30.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042941 335 SMRKMGCQPTNDTYIMLIKKFSRWR-QFGNVFKVWNEISENGNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (481)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 34455555554322 2333444444 455566666666665544555544444455555543
No 330
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=36.14 E-value=1.1e+02 Score=26.39 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=5.9
Q ss_pred HcCCChhhHHHHH
Q 042941 149 CRYKNVQDAEHLM 161 (481)
Q Consensus 149 ~~~~~~~~a~~~~ 161 (481)
+..|+.+-+..++
T Consensus 176 ~~~g~~~~v~~LL 188 (337)
T 4g8k_A 176 AEKGHVEVLKILL 188 (337)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 3445554444444
No 331
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=35.93 E-value=80 Score=22.46 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 382 SYTALIHALFLNGKL-------EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
.+..+...+.+.|++ .+...+.+.|+..+...+......+...+.+.+...+.++.+-....+.+..|.-+.+
T Consensus 20 mlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~~R~GGYTRI~K 99 (116)
T 2zjr_K 20 LARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILR 99 (116)
T ss_dssp HHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTTTSCSCCCEEEE
T ss_pred HHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 455667777777763 4666778888887777777777777777778788888899999999999999998887
Q ss_pred ccccchh
Q 042941 455 KSDQDRE 461 (481)
Q Consensus 455 ~~~~~~~ 461 (481)
+-.+.|+
T Consensus 100 ~~~R~GD 106 (116)
T 2zjr_K 100 VGTRRGD 106 (116)
T ss_dssp CCCCTTT
T ss_pred CCCCCCC
Confidence 7666664
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.84 E-value=1.4e+02 Score=22.64 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=33.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 042941 334 ESMRKMGCQPTNDTYIMLIKKFSRWRQFGNVFKVWNEISEN--GNGPDRSSYTALIHALFLNGK 395 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 395 (481)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|----+..+...|-
T Consensus 22 ~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 22 KILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445556666553 234455555556666777777777665 544555544444555555553
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.79 E-value=2e+02 Score=26.48 Aligned_cols=110 Identities=10% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHH
Q 042941 117 HDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVW 196 (481)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 196 (481)
.+.+-|.++.. +.|++--...|..-.+.+...|++++|-++-...+.+.-.+..+.+.+-..-. ..|+..-.+.+|
T Consensus 343 ~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~-~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPA-QPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCC-CTTSCCHHHHHH
T ss_pred CCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCC-CCCCCCHHHHHH
Confidence 45555555443 34444444456666667777778887777776666655556666655554433 445555566666
Q ss_pred HHHHhcCCcccHHhHHHHHHHHHhcCCHHHHHHHH
Q 042941 197 MEMSQRGICYDVVSFSCIISCYSKARNLHKVLRLF 231 (481)
Q Consensus 197 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 231 (481)
..+.+.|-- +..---.+.+.-...|+.+-..+++
T Consensus 419 ~~Ll~~g~L-n~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 419 GILLDQGQL-NKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccCcc-chHHhhHHhHHHHhccHHHHHHHHH
Confidence 666655422 3322223344444455554444443
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.52 E-value=1.4e+02 Score=22.33 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042941 354 KFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 354 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (481)
.+...+..-.|.++++.+.+.+...+..|..--+..+...
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3333334444555555554443333333333333333333
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.35 E-value=1.3e+02 Score=21.97 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=9.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH
Q 042941 360 QFGNVFKVWNEISENGNGPDRS 381 (481)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~ 381 (481)
..-.|.++++.+.+.+...+..
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~a 54 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLA 54 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHH
Confidence 3444444444444443333333
No 336
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.55 E-value=1.7e+02 Score=22.99 Aligned_cols=19 Identities=16% Similarity=-0.218 Sum_probs=8.6
Q ss_pred CCHHhHHHHHHHHHcCCCh
Q 042941 136 VGIEDFQGLLSALCRYKNV 154 (481)
Q Consensus 136 ~~~~~~~~ll~~~~~~~~~ 154 (481)
++..+-...+.++.+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444444445444443
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.50 E-value=1.3e+02 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhh
Q 042941 259 VKDAISLMKSMEEKGVAPNVVT 280 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~ 280 (481)
.-.|.++++.+.+.+...+..|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aT 55 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLAT 55 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHH
Confidence 3344444444444433333333
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.94 E-value=1.3e+02 Score=22.23 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=16.1
Q ss_pred hCCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhcCC
Q 042941 57 KQSGYAHSTREYHTMIAILGKVRKFDTAWALIDEMRGGE 95 (481)
Q Consensus 57 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 95 (481)
+..|++++..- ..++..+...+ .-.|.++++.+.+.+
T Consensus 11 ~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 11 RQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTA 47 (145)
T ss_dssp HTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTC
T ss_pred HHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhC
Confidence 34444444332 22333333333 445555555555543
No 339
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=33.05 E-value=80 Score=23.24 Aligned_cols=19 Identities=16% Similarity=0.044 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 042941 110 IRRYCAVHDVGRAINAFYA 128 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~ 128 (481)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344556677666666655
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.12 E-value=1.8e+02 Score=22.22 Aligned_cols=60 Identities=8% Similarity=-0.022 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--ChhhHHHHHH-HH-----HhcCCHHHHHHHHHHHHH
Q 042941 246 YNAVIHALAKGRLVKDAISLMKSMEEKGVAP--NVVTYNSLIK-PL-----CKARKLDEARQAFDEMLQ 306 (481)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~~-----~~~g~~~~a~~~~~~m~~ 306 (481)
|...+..|- .|++-+|.++++.+-+....+ ....|..||+ .. .+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333333 488888888888887665555 4556666666 22 347889999888887654
No 341
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=30.89 E-value=32 Score=27.54 Aligned_cols=17 Identities=12% Similarity=-0.148 Sum_probs=8.4
Q ss_pred HHHcCCChhhHHHHHhh
Q 042941 147 ALCRYKNVQDAEHLMFC 163 (481)
Q Consensus 147 ~~~~~~~~~~a~~~~~~ 163 (481)
..+..|+.+-+..+++.
T Consensus 64 ~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 64 AAVSADAQGVFQILIRN 80 (223)
T ss_dssp HHHHTTCHHHHHHHHHB
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 34445555555555543
No 342
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=30.59 E-value=94 Score=22.20 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 382 SYTALIHALFLNGKL-------EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
.+..+...+.+.|++ .+...+.+.|+..+...+......+...+.+.+...+.++.+-....+.+..|.-+.+
T Consensus 20 mlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~~R~GGYTRI~K 99 (118)
T 1gd8_A 20 LYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLK 99 (118)
T ss_dssp HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSCCEEEEE
T ss_pred HHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 455566666777653 4556677777776666677777788888888888889899999999999999998887
Q ss_pred cc-ccchh
Q 042941 455 KS-DQDRE 461 (481)
Q Consensus 455 ~~-~~~~~ 461 (481)
+- ...|+
T Consensus 100 ~~~~R~GD 107 (118)
T 1gd8_A 100 LAERRRGD 107 (118)
T ss_dssp EEEECTTT
T ss_pred CCCCCCCC
Confidence 76 56564
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.24 E-value=1.4e+02 Score=22.31 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042941 259 VKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK 290 (481)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 290 (481)
.-.|.++++.+.+.+...+..|.-.-+..+..
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDD 64 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33444444444444333333333333333333
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.04 E-value=1.1e+02 Score=19.66 Aligned_cols=33 Identities=3% Similarity=0.029 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042941 361 FGNVFKVWNEISENGNGPDRSSYTALIHALFLN 393 (481)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (481)
.-.+.++++.+.+.+...+..|-.-.+..+...
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 344445555554443333444433334444333
No 345
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.01 E-value=1.9e+02 Score=22.31 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=25.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHH---hHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVV---SFSCIISCYS-KARNLHKVLRLFDQMKRMGIECD 242 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 242 (481)
..|+.+.-.++.+.+.+.|..++.. -.+.|..++. ...+.....++.+.+.+.|..++
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 4455554455555555555544432 1122222111 12233344555556666664443
No 346
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.59 E-value=1.8e+02 Score=21.74 Aligned_cols=22 Identities=0% Similarity=0.004 Sum_probs=9.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 042941 217 CYSKARNLHKVLRLFDQMKRMG 238 (481)
Q Consensus 217 ~~~~~~~~~~a~~~~~~~~~~~ 238 (481)
.+...+..-.|.++++.+.+.+
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~ 56 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKD 56 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHS
T ss_pred HHHhCCCCCCHHHHHHHHHHhC
Confidence 3333333444444444444433
No 347
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.18 E-value=69 Score=19.53 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042941 260 KDAISLMKSMEEKGVAPNVVTYNSLIKPL 288 (481)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 288 (481)
++|.+.|.+|.+..-.++..||...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665443334666777777666
No 348
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.00 E-value=2.1e+02 Score=22.57 Aligned_cols=19 Identities=11% Similarity=0.023 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 042941 110 IRRYCAVHDVGRAINAFYA 128 (481)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~ 128 (481)
+...+..|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344555666666665554
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.72 E-value=99 Score=27.10 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcC
Q 042941 211 FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGR-LVKDAISLMKSMEEKG 273 (481)
Q Consensus 211 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~ 273 (481)
...++.-|...|+.++|...++++...... ...+...+..++-+.. ..+.+..++..+.+.|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~ 76 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 566788888889999988888776421110 1122222222222211 2345556666666653
No 350
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.57 E-value=4.2e+02 Score=25.81 Aligned_cols=80 Identities=8% Similarity=-0.052 Sum_probs=41.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 042941 214 IISCYSKARNLHKVLRLFDQMKRMGIECDRKVYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVVTYNSLIKPLCK--- 290 (481)
Q Consensus 214 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 290 (481)
...++.-.|+++.|.+++-.. ...+..++.+.+.-|.-.+ .. +.+......-...-+..||..|++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---ID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 455566788999998877644 2345555554444433222 11 111111000113346778888875
Q ss_pred cCCHHHHHHHHHHH
Q 042941 291 ARKLDEARQAFDEM 304 (481)
Q Consensus 291 ~g~~~~a~~~~~~m 304 (481)
..++..|.++|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 57888888888776
No 351
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=28.40 E-value=1.1e+02 Score=22.99 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=34.9
Q ss_pred hHHHHHHhcC-CChhHHHHHHHhcCCCCCHHHHHHHHHHh
Q 042941 3 TLVDILREFS-HKRSEMRNKIEECGIKVSSELVSEVLSWV 41 (481)
Q Consensus 3 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 41 (481)
.|.+++.+.+ .+-.++.+.+++.|+..|..++..-|..+
T Consensus 9 ~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 9 KIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 5778888888 58899999999999999999999999987
No 352
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=28.26 E-value=2.9e+02 Score=23.76 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=61.0
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcCH-HHHHHHHHHhhhCCCCCC-----CHHHHHHHHHHHhccCChhHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWVRNDW-EAAFTFFLWAGKQSGYAH-----STREYHTMIAILGKVRKFDTAWAL 87 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~ 87 (481)
+|..+.++|+. .-.+...+..+|....... ......|..+- ...+.- ..-.+..++.++....--..|..+
T Consensus 7 Da~~L~kA~kg--~Gtde~~ii~IL~~rs~~qr~~I~~~Y~~~~-g~dL~~~lk~elsG~fe~~l~~l~~~~~~~DA~~L 83 (308)
T 2hyv_A 7 DALNIETAIKT--KGVDEVTIVNILTNRSNAQRQDIAFAYQRRT-KKELASALKSALSGHLETVILGLLKTPAQYDASEL 83 (308)
T ss_dssp HHHHHHHHHHS--TTCCHHHHHHHHTTSCHHHHHHHHHHHHHHH-SSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-CccHHHHHHHHcCCCHHHHHHHHcCCcHHHHHHHH
Confidence 57788888874 4468888888877642211 12222222221 110000 012344555555544444567777
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhcCCCCC-----HHhHHHHHHHHHcCCC
Q 042941 88 IDEMRGGETGPSLVTKQTLLILIRRYCAV--HDVGRAINAFYAYKRFKFAVG-----IEDFQGLLSALCRYKN 153 (481)
Q Consensus 88 ~~~~~~~~~~p~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~ 153 (481)
.+.|...| .| .. .++..++.. .+.....+.|..+-...+.-+ ...|..++-+++....
T Consensus 84 ~~AmkG~G--td---e~---~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll~~l~~~~r 148 (308)
T 2hyv_A 84 KASMKGLG--TD---ED---SLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRR 148 (308)
T ss_dssp HHHTSTTC--CC---HH---HHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred HHHhhcCC--CC---HH---HHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHHHHHHcccc
Confidence 77776544 34 33 344444443 234455555555443322111 1235555555555443
No 353
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=27.87 E-value=3.1e+02 Score=24.06 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=13.3
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHh
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWV 41 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 41 (481)
+|..+.++|+ |.-.+...+..+|...
T Consensus 47 Da~~L~kA~k--g~GtDE~~iI~IL~~r 72 (346)
T 1hm6_A 47 DVEALHKAIT--VKGVDEATIIEILTKR 72 (346)
T ss_dssp HHHHHHHHHS--STTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcc--CCCCCHHHHHHHHhcC
Confidence 3455555554 3334555555555543
No 354
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.15 E-value=2.6e+02 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.054 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 042941 241 CDRKVYNAVIHALAKGRLVKDAISLMKSME 270 (481)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (481)
++.......+..+.+.|+.++|..+|=+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555666677777777777777775543
No 355
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.91 E-value=1.5e+02 Score=20.22 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCCHhHHHHHH
Q 042941 363 NVFKVWNEISENGNGPDRSSYTALIHALFLNGKLEEAHQYYMEM-----KEKQLLPEPKTDELLQ 422 (481)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-----~~~~~~p~~~~~~~l~ 422 (481)
.|.++.+++...|+.|+..+...++..|...+- + +.++..+. ...|..|+..+.+.+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 456666666667777777776777766665553 1 22222221 2336666666665544
No 356
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.57 E-value=2.5e+02 Score=22.60 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=12.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHH
Q 042941 250 IHALAKGRLVKDAISLMKSMEE 271 (481)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~ 271 (481)
+-.|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555666666666555544
No 357
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.29 E-value=2.4e+02 Score=21.82 Aligned_cols=78 Identities=12% Similarity=-0.117 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHH
Q 042941 103 KQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGW 182 (481)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (481)
...-...+.++...++.+. ...+..+.. .++...-...+.++.+.++.+....+...+. .++..+-...+.++
T Consensus 59 ~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~---d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 59 AWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLIKALK---DEDWFVRIAAAFAL 131 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 4444444555555554322 222222322 2455554555555555555433333333232 13444444444544
Q ss_pred HHhcCC
Q 042941 183 CNIIGS 188 (481)
Q Consensus 183 ~~~~~~ 188 (481)
. ..++
T Consensus 132 ~-~~~~ 136 (201)
T 3ltj_A 132 G-EIGD 136 (201)
T ss_dssp H-HHTC
T ss_pred H-HhCC
Confidence 4 4443
No 358
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.83 E-value=2.5e+02 Score=21.61 Aligned_cols=21 Identities=0% Similarity=-0.300 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHhhcCCC
Q 042941 115 AVHDVGRAINAFYAYKRFKFA 135 (481)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~ 135 (481)
..|+.+.-.++.+.+.+.|..
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcchHHHHHHHHHHCCCC
Confidence 334433333344444444433
No 359
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.79 E-value=3e+02 Score=23.82 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=5.9
Q ss_pred HhcCCHHHHHHHH
Q 042941 114 CAVHDVGRAINAF 126 (481)
Q Consensus 114 ~~~~~~~~a~~~~ 126 (481)
+..|+.+.+..++
T Consensus 28 a~~g~~~~v~~Ll 40 (364)
T 3ljn_A 28 ARKGQTDEVRRLI 40 (364)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445554444443
No 360
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.56 E-value=1.5e+02 Score=21.86 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.1
Q ss_pred cCCChhhHHHHH
Q 042941 150 RYKNVQDAEHLM 161 (481)
Q Consensus 150 ~~~~~~~a~~~~ 161 (481)
+.|+.+....++
T Consensus 17 ~~g~~~~v~~ll 28 (165)
T 3twr_A 17 KAGDVETVKKLC 28 (165)
T ss_dssp HHTCHHHHHHHC
T ss_pred HhCCHHHHHHHH
Confidence 334444444443
No 361
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.43 E-value=2.5e+02 Score=21.40 Aligned_cols=64 Identities=8% Similarity=0.029 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHhh
Q 042941 66 REYHTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIR-R-----YCAVHDVGRAINAFYAYKR 131 (481)
Q Consensus 66 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 131 (481)
..|...+..|-. |++-+|-++++..=...-.|+ .....|..||+ . ..+.|+...|..++.+...
T Consensus 34 ~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~-~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGN-TESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555555555 999999999999877644441 11566777777 2 3456899999999888764
No 362
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.24 E-value=1.8e+02 Score=19.67 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 042941 382 SYTALIHALFLNGKLEEAHQYYMEM 406 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~m 406 (481)
.+.-....+.+.|++++|++..+..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4555677888899999988766553
No 363
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.45 E-value=1.9e+02 Score=20.91 Aligned_cols=43 Identities=9% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042941 352 IKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 352 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (481)
+..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344444555555555555444444444333444444443
No 364
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.26 E-value=1.7e+02 Score=21.41 Aligned_cols=45 Identities=9% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042941 350 MLIKKFSRWRQFGNVFKVWNEISENGNGPDRSSYTALIHALFLNG 394 (481)
Q Consensus 350 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (481)
.++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444454555566666666666555555554444444555544
No 365
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.13 E-value=3e+02 Score=21.87 Aligned_cols=55 Identities=7% Similarity=0.075 Sum_probs=30.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN-----LHKVLRLFDQMKRMGIE 240 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 240 (481)
+..+.+.|+-.+-+|.+.| .|.-..-..++.+.-.-|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4567777777777777777 5555544455555444443 23344445555555543
No 366
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.11 E-value=3e+02 Score=21.83 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCcccHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcC
Q 042941 185 IIGSSREAERVWMEMSQRGICYDVVSFSCIISCYSKARN-----LHKVLRLFDQMKRMG 238 (481)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~ 238 (481)
+..+.+.|+-.+-+|.+.|..|.-..-..++.+.-.-|. ...|...++.....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 77 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVG 77 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHC
Confidence 456777777777777777766655555555544444332 233444444444444
No 367
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.60 E-value=3e+02 Score=21.70 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=29.3
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042941 252 ALAKGRLVKDAISLMKSMEEKGVAPNVVT--YNSLIKPLCKARKLDEARQAFDEMLQRGIS 310 (481)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (481)
..+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..
T Consensus 127 ~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 127 FAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 334455544 3344445555443221 112344456677777777777777776643
No 368
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=21.55 E-value=3.4e+02 Score=22.29 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHcCCChhhHHHHHh
Q 042941 97 GPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGIEDFQGLLSALCRYKNVQDAEHLMF 162 (481)
Q Consensus 97 ~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 162 (481)
.|.+.|......+.+.| ..++..|+-..- ..+.-..|-...|..++..+.+.+..+.+..+|+
T Consensus 115 ~p~~sT~~~idt~~~lc--s~d~~~aLGA~y-atE~iaipe~~ly~~li~gL~~~~~~~~~l~FF~ 177 (244)
T 3b5o_A 115 MPSVATSKLLRTVLSLF--DRQVDYVLGATY-AIEATSIPELTLIVKLVEWLHEGAIPKDLQYFFS 177 (244)
T ss_dssp CCCHHHHHHHHHHHHHH--TSCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHh--CCCHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34433333333344444 556666655542 2221112222356666666655544444555553
No 369
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=21.42 E-value=1.4e+02 Score=17.81 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHHhcC-CChhHHHHHHHhcCCCCCHHHHHHHHHH
Q 042941 4 LVDILREFS-HKRSEMRNKIEECGIKVSSELVSEVLSW 40 (481)
Q Consensus 4 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 40 (481)
|..++.+.+ -++.++.+.+.+.|...+..|+..-|..
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 345555444 4788999999888888888888877763
No 370
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.35 E-value=92 Score=27.32 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=49.5
Q ss_pred CchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 042941 170 FNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVS--FSCIISCYSKARNLHKVLRLFDQMKRMGIECDRKVYN 247 (481)
Q Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (481)
.|..-++.|..+. ..|+.+.+..++ +.|..++... -.+.+...+..|+.+-+.. +.+.|..++...-.
T Consensus 16 ~d~~g~t~L~~Aa--~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKIHVAA--RKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKY----LASVGEVHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHHHHHH--HHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHH----HHHHCCCCCCBTTB
T ss_pred cCCCCCCHHHHHH--HcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHH----HHHCCCCccccCCC
Confidence 3555566655553 567776655555 3454443221 1123444455666644433 33444333331222
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCh
Q 042941 248 AVIHALAKGRLVKDAISLMKSMEEKGVAPNV 278 (481)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (481)
+.+...+..|+.+-+..+++.....|..++.
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 2344445667777777776666555655443
No 371
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.25 E-value=77 Score=26.36 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=8.1
Q ss_pred HHHhcCCHHHHHHHHH
Q 042941 287 PLCKARKLDEARQAFD 302 (481)
Q Consensus 287 ~~~~~g~~~~a~~~~~ 302 (481)
..+..|+.+-+..+++
T Consensus 239 ~A~~~g~~~iv~~Ll~ 254 (273)
T 2pnn_A 239 LAASSGKIGVLAYILQ 254 (273)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHH
Confidence 3345666555444444
No 372
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.07 E-value=38 Score=28.01 Aligned_cols=28 Identities=7% Similarity=-0.125 Sum_probs=17.7
Q ss_pred HHHHhccCChhHHHHHHHHHhcCCCCCC
Q 042941 72 IAILGKVRKFDTAWALIDEMRGGETGPS 99 (481)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~~~~~p~ 99 (481)
+...++.|+.+....+++.+.+.|..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445567778777777776666554444
No 373
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.76 E-value=2.8e+02 Score=21.04 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=53.7
Q ss_pred hHHHHHHhc--CCChhHHHHHH-HhcCCCCCHHHHHHHHHHhhcCHHH-HHHHHHHhhhCCCCCCC-HHHHHHHHHHHhc
Q 042941 3 TLVDILREF--SHKRSEMRNKI-EECGIKVSSELVSEVLSWVRNDWEA-AFTFFLWAGKQSGYAHS-TREYHTMIAILGK 77 (481)
Q Consensus 3 ~~~~~~~~~--~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 77 (481)
++-+++++. .++++.+.+.+ .+.|+ ....-.+++.+++.+... +..+++.+....|++.| .-.|+.-=+.+.+
T Consensus 49 kv~eii~~~~e~s~~~~Lv~~l~~e~Gi--~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 49 KLHEVISGDYEPSQAEKLVQDLCDETGI--RKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHSCCCTTCHHHHHHHHHHHHCB--CHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHhcccChhhHHHHHHHHHHHhCc--ccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 455777743 46888888888 77886 566677788888654433 55777777666665544 4566666666666
Q ss_pred cCChhHHHHHH
Q 042941 78 VRKFDTAWALI 88 (481)
Q Consensus 78 ~g~~~~a~~~~ 88 (481)
.++.....++.
T Consensus 127 s~d~~dikrL~ 137 (168)
T 3cz6_A 127 SNDQEQIRKLV 137 (168)
T ss_dssp SCCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 66655544443
No 374
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=20.75 E-value=1.2e+02 Score=20.18 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=8.1
Q ss_pred HHHHHHHHHhcCCCCCC
Q 042941 83 TAWALIDEMRGGETGPS 99 (481)
Q Consensus 83 ~a~~~~~~~~~~~~~p~ 99 (481)
.|..+|+.+.+.|++.+
T Consensus 37 TAKGifKyL~elGvPas 53 (115)
T 2es9_A 37 TAKGILKYLHDLGVPVS 53 (115)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 34445555555554433
No 375
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.74 E-value=1.9e+02 Score=25.97 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=131.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCH---HhHHHHH
Q 042941 69 HTMIAILGKVRKFDTAWALIDEMRGGETGPSLVTKQTLLILIRRYCAVHDVGRAINAFYAYKRFKFAVGI---EDFQGLL 145 (481)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll 145 (481)
.+.+...++.|+.+-+.-+++. |..++..+..-. +.+...+..|+.+-+.-+++ .|..|+. ... ..+
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~-t~L 117 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLE----NNANPNLATTAGH-TPL 117 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTCC-CHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHh----CCCCCCCCCCCCC-cHH
Confidence 3455556667776655555543 333332211111 23444456677665544443 3433322 112 234
Q ss_pred HHHHcCCChhhHHHHHhhccCCCCCchHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCcccHHh--HHHHHHHHHhcCC
Q 042941 146 SALCRYKNVQDAEHLMFCNKDVFPFNTKSFNIILNGWCNIIGSSREAERVWMEMSQRGICYDVVS--FSCIISCYSKARN 223 (481)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~ 223 (481)
...+..|+.+-+..+++.-......+...++.+..+ + ..|+.+-+.. +.+.|..++... -.+.+...+..|+
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-~-~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 191 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA-A-KYGKVRVAEL----LLERDAHPNAAGKNGLTPLHVAVHHNN 191 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH-H-HTTCHHHHHH----HHHTTCCTTCCCSSCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH-H-HcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 445566777777777765322222222223333333 3 5677654443 344454433211 1123344455666
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHH
Q 042941 224 LHKVLRLFDQMKRMGIECDRK---VYNAVIHALAKGRLVKDAISLMKSMEEKGVAPNVV---TYNSLIKPLCKARKLDEA 297 (481)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a 297 (481)
.+ +++.+.+.|..++.. .++ .+...+..|+.+-+ +.+.+.|..++.. ..+. +...+..|..+-+
T Consensus 192 ~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v 261 (437)
T 1n11_A 192 LD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVA----RSLLQYGGSANAESVQGVTP-LHLAAQEGHAEMV 261 (437)
T ss_dssp HH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHH
T ss_pred HH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCH-HHHHHHCCCHHHH
Confidence 54 334444455433321 222 33344556665543 4444555443322 2233 3334556665544
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHhchhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHH
Q 042941 298 RQAFDEMLQRGISPTI---RTYHAFLDIIRTGEEVFGLLESMRKMGCQPTND---TYIMLIKKFSRWRQFGNVFKVWNEI 371 (481)
Q Consensus 298 ~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 371 (481)
..+ .+.+..++. ...+.+..+... + -.++++.+.+.|..++.. -.+ .+...+..|+.+-+.-+
T Consensus 262 ~~L----l~~~~~~~~~~~~g~t~L~~A~~~-~-~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L---- 330 (437)
T 1n11_A 262 ALL----LSKQANGNLGNKSGLTPLHLVAQE-G-HVPVADVLIKHGVMVDATTRMGYT-PLHVASHYGNIKLVKFL---- 330 (437)
T ss_dssp HHH----HTTTCCTTCCCTTCCCHHHHHHHH-T-CHHHHHHHHHHTCCTTCCCSSCCC-HHHHHHHSSCSHHHHHH----
T ss_pred HHH----HhcCCCCCCCCCCCCCHHHHHHHc-C-CHHHHHHHHhCCccCCCCCCCCCC-HHHHHHHcCcHHHHHHH----
Confidence 433 344433221 111222222211 1 133445555555433211 112 22334456666544444
Q ss_pred HHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042941 372 SENGNGPDRS---SYTALIHALFLNGKLEEAHQYYMEMKEKQLLPEP 415 (481)
Q Consensus 372 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 415 (481)
.+.|..++.. -++. +...++.|+.+ +++.+.+.|..|+.
T Consensus 331 l~~gad~n~~~~~g~t~-L~~A~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 331 LQHQADVNAKTKLGYSP-LHQAAQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSCC
T ss_pred HhcCCCCCCCCCCCCCH-HHHHHHCChHH----HHHHHHHCcCCCCC
Confidence 3444433321 1222 33334566654 44555566766654
No 376
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.61 E-value=3.4e+02 Score=21.90 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHH--hH-----HHHHHHHHcCCChhhHHHHHhhccC
Q 042941 119 VGRAINAFYAYKRFKFAVGIE--DF-----QGLLSALCRYKNVQDAEHLMFCNKD 166 (481)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~--~~-----~~ll~~~~~~~~~~~a~~~~~~~~~ 166 (481)
.+.|+.+|+.+.+.-..++.. .- ...+-.|.+.|.+++|.+++++..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 466777777776543211111 11 1234456777777777777777544
No 377
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=20.47 E-value=4.1e+02 Score=22.84 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=44.4
Q ss_pred ChhHHHHHHHhcCCCCCHHHHHHHHHHhhcC-HHHHHHHHHHhhhCCCCCC-----CHHHHHHHHHHHhccCChhHHHHH
Q 042941 14 KRSEMRNKIEECGIKVSSELVSEVLSWVRND-WEAAFTFFLWAGKQSGYAH-----STREYHTMIAILGKVRKFDTAWAL 87 (481)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~ 87 (481)
+|..+.++|+ |.-.+..++..+|....+. .....+.|..+- ...+.- ..-.|..++-++.....-..|..+
T Consensus 17 DA~~L~~A~k--G~Gtde~~lieIL~~rs~~q~~~I~~~Y~~~y-g~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~L 93 (315)
T 1dm5_A 17 DAETLRKAMK--GIGTDEKSITHILATRSNAQRQQIKTDYTTLF-GKHLEDELKSELSGNYEAAALALLRKPDEFLAEQL 93 (315)
T ss_dssp HHHHHHHHHS--SSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHH-SSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH-CCCHHHHHHhhcCccHHHHHHHHccChhHHHHHHH
Confidence 5777888886 4446788888888775322 222333333331 111100 112466667777665455678888
Q ss_pred HHHHhcCC
Q 042941 88 IDEMRGGE 95 (481)
Q Consensus 88 ~~~~~~~~ 95 (481)
.+.|...|
T Consensus 94 ~~A~kg~G 101 (315)
T 1dm5_A 94 HAAMKGLG 101 (315)
T ss_dssp HHHHHSSS
T ss_pred HHHhhcCC
Confidence 88886543
No 378
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.35 E-value=1.6e+02 Score=19.93 Aligned_cols=12 Identities=33% Similarity=0.399 Sum_probs=4.7
Q ss_pred hHHHHHHHHHhc
Q 042941 82 DTAWALIDEMRG 93 (481)
Q Consensus 82 ~~a~~~~~~~~~ 93 (481)
+.|.++++.++.
T Consensus 54 ~~ar~Lld~L~~ 65 (97)
T 3ygs_P 54 DQARQLIIDLET 65 (97)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 333344443333
No 379
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=20.32 E-value=88 Score=24.59 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhhhhHHHHHHHHHhhcCccCCCCcccccc
Q 042941 382 SYTALIHALFLNGKL-------EEAHQYYMEMKEKQLLPEPKTDELLQDWSYNKQFVERQIASLKAHQPQSGQNTRVISK 454 (481)
Q Consensus 382 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (481)
.+..+...+.+.|++ ++...+.++|+..+-..+......+...+.+.+...+.++.+-....+.+..|.-+.+
T Consensus 109 mLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~dR~GGYTRIlK 188 (205)
T 3bbo_P 109 LLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIR 188 (205)
T ss_dssp HHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGSSCCSCCEECCB
T ss_pred HHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 455666777777763 4555667777666555566666667777777788888888888888899999998888
Q ss_pred ccccchh
Q 042941 455 KSDQDRE 461 (481)
Q Consensus 455 ~~~~~~~ 461 (481)
+-.+.|+
T Consensus 189 lg~R~GD 195 (205)
T 3bbo_P 189 TLPRRGD 195 (205)
T ss_dssp CSCCSSS
T ss_pred CCCCCCC
Confidence 8766664
Done!