Query 042942
Match_columns 189
No_of_seqs 191 out of 1581
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 3.4E-24 1.1E-28 170.0 14.3 162 14-175 53-243 (491)
2 3o7q_A L-fucose-proton symport 99.9 3E-22 1E-26 156.5 15.4 149 4-152 49-223 (438)
3 2gfp_A EMRD, multidrug resista 99.9 8E-22 2.7E-26 151.5 12.1 146 5-153 24-169 (375)
4 1pw4_A Glycerol-3-phosphate tr 99.9 4.1E-22 1.4E-26 156.2 8.6 144 4-151 51-199 (451)
5 4aps_A DI-OR tripeptide H+ sym 99.8 3E-20 1E-24 147.4 16.1 142 8-152 46-190 (491)
6 2xut_A Proton/peptide symporte 99.8 7.9E-19 2.7E-23 140.4 15.1 144 7-153 39-193 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 2E-13 6.9E-18 106.7 15.8 143 8-153 280-428 (451)
8 2cfq_A Lactose permease; trans 99.5 8.9E-14 3E-18 108.5 9.8 136 15-153 258-394 (417)
9 4gc0_A D-xylose-proton symport 99.5 4.8E-13 1.6E-17 105.9 12.3 156 7-163 303-474 (491)
10 3o7q_A L-fucose-proton symport 99.4 2.3E-12 7.9E-17 100.4 11.0 139 8-152 287-426 (438)
11 2cfq_A Lactose permease; trans 99.4 4.1E-14 1.4E-18 110.3 0.7 141 7-151 34-180 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.4 3.8E-12 1.3E-16 100.8 10.9 138 10-151 313-464 (491)
13 2gfp_A EMRD, multidrug resista 99.0 7.5E-11 2.6E-15 90.2 3.4 135 5-145 223-363 (375)
14 2xut_A Proton/peptide symporte 98.8 7.9E-09 2.7E-13 82.4 8.3 113 18-130 337-466 (524)
15 2g9p_A Antimicrobial peptide l 71.6 2.5 8.6E-05 17.9 1.5 14 35-48 2-15 (26)
16 2jln_A MHP1; hydantoin, transp 49.2 66 0.0023 25.4 7.3 13 86-98 370-382 (501)
17 4dve_A Biotin transporter BIOY 48.5 63 0.0022 22.2 6.3 23 23-45 100-122 (198)
18 2bzw_B BCL2-antagonist of cell 21.2 22 0.00076 15.4 0.1 12 34-45 2-13 (27)
19 4aw6_A CAAX prenyl protease 1 21.0 2.9E+02 0.0099 21.8 6.5 53 8-60 150-209 (482)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=3.4e-24 Score=170.05 Aligned_cols=162 Identities=22% Similarity=0.346 Sum_probs=138.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhh------------------hhhhHHHHHHH
Q 042942 14 DSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGG------------------AAFNIYMLIFG 75 (189)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 75 (189)
+..+.+++.+++.+|.++|++++|+++||+|||++++++.+++.++.++.+ +++++++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 345678899999999999999999999999999999999999999998887 46899999999
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc-----CCcchHHHHHhhHHHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN-----GGWGWRISLAMAAAPASI 150 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~ 150 (189)
|+++|++.|...+..+.+++|+.|+++|++..+..+.+..+|.++++.++....... +...||+.+....+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999988876554322 234788888877776666
Q ss_pred HHh------hcCCccccccchHHHHHHHHHH
Q 042942 151 LTI------ETKNLPIEQMDKLWGEQTVGRA 175 (189)
Q Consensus 151 ~~~------e~~~~~~~~~~~~~~~~~~~~~ 175 (189)
..+ |+|+|...+++.+++++..++.
T Consensus 213 ~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 213 FLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 554 8999988887777666555443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.89 E-value=3e-22 Score=156.51 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=132.3
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHh
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALG---GAAFNIYMLIFGRVLLG 80 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~G 80 (189)
.|.+.+++|+++.+.+++.+++.+++.++.++.|+++||+|||++++++.++.+++.++. .++++++.++++|++.|
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 128 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999998 78899999999999999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcc-cccCC----------------------cch
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTE-KINGG----------------------WGW 137 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~----------------------~~w 137 (189)
++.+...+....++.|++|+++|++++++.+.+..+|..++|.++..+. ...+. .+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999987765 33221 019
Q ss_pred HHHHHhhHHHHHHHH
Q 042942 138 RISLAMAAAPASILT 152 (189)
Q Consensus 138 ~~~~~~~~~~~~~~~ 152 (189)
|+.|++.+++..+..
T Consensus 209 ~~~~~~~~~~~~~~~ 223 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVA 223 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877665555443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=8e-22 Score=151.52 Aligned_cols=146 Identities=15% Similarity=0.264 Sum_probs=134.9
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Q 042942 5 TNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIG 84 (189)
Q Consensus 5 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 84 (189)
|.+.+++|.++++.+++.+.+.+++.+++++.|+++||+|||+++.++..+..++.++..+.++++.+++.|++.|++.+
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~ 103 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG 103 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 85 FANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 85 ~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
...+....++.|++|+++|+++++..+....+|..++|.++..+... .+||+.+.+.+++..+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 104 VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776643 4899999988877766554
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.86 E-value=4.1e-22 Score=156.18 Aligned_cols=144 Identities=17% Similarity=0.075 Sum_probs=130.8
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHH
Q 042942 4 DTNISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGA----AFNIYMLIFGRVLL 79 (189)
Q Consensus 4 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 79 (189)
.|.+.+++ .++.+.+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.++ +++++.++++|++.
T Consensus 51 ~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 51 MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHH
T ss_pred HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 36677888 99999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHH
Q 042942 80 GVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASIL 151 (189)
Q Consensus 80 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~ 151 (189)
|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++..+... .+ ||+.|++.+++.++.
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILV 199 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765433 36 999888877665543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=3e-20 Score=147.41 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=128.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhh-hcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRA-FGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFA 86 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 86 (189)
++++|+++.+.+++.+++.+++.++++++|+++|| +|||+++.++.++..++.++.+++++++.++++|++.|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34599999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCccc--cchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHH
Q 042942 87 NQSVPLYLSEMAPPKN--RGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILT 152 (189)
Q Consensus 87 ~~~~~~~~~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 152 (189)
.+....++.|++|+++ |+++.+.++...++|..++|.++..+... .+||+.|++.++..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Confidence 9999999999999988 67778889999999999999998776643 489999988766555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.81 E-value=7.9e-19 Score=140.35 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=127.7
Q ss_pred cccccc------CCchhHHHHHHHHHHHHHHHHhhHHHhhhhh-cchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHH
Q 042942 7 ISNYCN------FDSQLLTTFTSSLYIAGLIASLFASSVTRAF-GRKASILVGGTAFLAGSALGGAAF-NIYMLIFGRVL 78 (189)
Q Consensus 7 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 78 (189)
+.+++| +++.+.+++.+++.+++.++.++.|+++||+ |||+++.++.++.+++.++.++++ +++.+++.|++
T Consensus 39 l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (524)
T 2xut_A 39 LMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFL 118 (524)
T ss_dssp HHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345667 9999999999999999999999999999999 999999999999999999999888 99999999999
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHH---HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIG---FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|++.+...+....++.|++|+++|++..+. .+.+.++|..++|.++..+... .+|++.|++.+++.++..+
T Consensus 119 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 119 IALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877666 8889999999999998766533 4899999888776655443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=2e-13 Score=106.72 Aligned_cols=143 Identities=14% Similarity=0.054 Sum_probs=120.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhh--cchhHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHHhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAF--GRKASILVGGTAFL-AGSALGGAA--FNIYMLIFGRVLLGVG 82 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~G~~ 82 (189)
++.+|.++.+.+++.+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFL 359 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999 99999888877776 666666655 3667777788889998
Q ss_pred hhhhhhhhhHHHhhcCCccccchhHHHHHHHHHH-HHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 83 IGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGI-GVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+... .+|+..|++.+++.++..+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVI 428 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999999999 999999997766543 3788888877766655544
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.50 E-value=8.9e-14 Score=108.46 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=109.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 042942 15 SQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFANQSVPLYL 94 (189)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 94 (189)
....++..++..++..++.++.++++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777888889999999999999999999999888888877777777777777777778887777777778899
Q ss_pred hhcCCccccchhHHH-HHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHHHh
Q 042942 95 SEMAPPKNRGAFNIG-FQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASILTI 153 (189)
Q Consensus 95 ~e~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 153 (189)
.|.+|++.|+++.+. ++....+|..++|.+++.+... .++...|.+.+++.++..+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 999999999999998 5888889999999998766532 3677777776666554443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.47 E-value=4.8e-13 Score=105.89 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=101.3
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHH--HHh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAF----NIYMLIFGRV--LLG 80 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--l~G 80 (189)
+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +....++..+ ..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 303 VFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4445566666666777777888999999999999999999999999888887776654321 1122222222 222
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccccc---CCcchHHHHHhhHHHHHHHHh----
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKIN---GGWGWRISLAMAAAPASILTI---- 153 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~---- 153 (189)
++. ...+....+.+|.+|++.|+++.++......++..+++.+...+.... ...++.+.|++.+.++++..+
T Consensus 383 ~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 383 FAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 222 233566789999999999999999999888888888877644332110 011233344444444433322
Q ss_pred ---hcCCcccccc
Q 042942 154 ---ETKNLPIEQM 163 (189)
Q Consensus 154 ---e~~~~~~~~~ 163 (189)
||+.+.+|+-
T Consensus 462 ~~PETkg~tLeei 474 (491)
T 4gc0_A 462 FVPETKGKTLEEL 474 (491)
T ss_dssp HCCCCTTCCHHHH
T ss_pred eecCCCCCCHHHH
Confidence 8877766553
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=2.3e-12 Score=100.40 Aligned_cols=139 Identities=8% Similarity=-0.088 Sum_probs=110.7
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Q 042942 8 SNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSALGGAAFNIYMLIFGRVLLGVGIGFAN 87 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~ 87 (189)
++.+|.++.+.+++.+...++..++.++.++++||+|||+.+.++.++..++.++..+.++...+.. .++.|++.+...
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 365 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQY 365 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHH
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999888888877777665444 477889999889
Q ss_pred hhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcc-hHHHHHhhHHHHHHHH
Q 042942 88 QSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWG-WRISLAMAAAPASILT 152 (189)
Q Consensus 88 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~ 152 (189)
+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.... + ++..|.+.++..++..
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---GNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---TSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHH
Confidence 99999999999976 788887766 55688899998877665443 4 6666665544444333
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=4.1e-14 Score=110.35 Aligned_cols=141 Identities=10% Similarity=-0.015 Sum_probs=96.4
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHHHHHHHHH---hhhhhhHH-HHHHHHHHHhhh
Q 042942 7 ISNYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTAFLAGSAL---GGAAFNIY-MLIFGRVLLGVG 82 (189)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~G~~ 82 (189)
+++++|+++.+.+++.+++.+++.++++++|+++||+|||++++++..+.++.... ..+.+... .++..+++.+++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999988776553211 12222111 123445555555
Q ss_pred hhhhhhhhhHHHhhcCCc--cccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 83 IGFANQSVPLYLSEMAPP--KNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 83 ~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.+..++.......++.++ ++|+...+..+....+|..++|.++..+.. .+|+..|++.++..++.
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTH
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHH
Confidence 554444334444444432 355666777777778888888888776553 26899888776654433
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=3.8e-12 Score=100.77 Aligned_cols=138 Identities=12% Similarity=-0.049 Sum_probs=105.9
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHH-----HHHHHHHHHHHHhhhhh---------hHHHHHHH
Q 042942 10 YCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASIL-----VGGTAFLAGSALGGAAF---------NIYMLIFG 75 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~ 75 (189)
..+.+....+++.+...++..++.++.+++.||+|||+... .+..+.+++.++..+.. +.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS 392 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence 34555556777788888899999999999999999986655 67777777776665533 56677778
Q ss_pred HHHHhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhHHHHHHH
Q 042942 76 RVLLGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAAAPASIL 151 (189)
Q Consensus 76 ~~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 151 (189)
.++.|++.+...+....++.|.+|++.|+++.++.+....+|..+++.+...+... ++...|...+.++++.
T Consensus 393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVL 464 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHH
Confidence 88899999888888999999999999999999999999999999999997766532 3444555554444433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.05 E-value=7.5e-11 Score=90.22 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=101.0
Q ss_pred cccc-ccccCCchhHHHHHHHHHHHHHHHHhhHHHhhhhhcchhHHHHHHHH-HHHHHHH--hhh--hhhHHHHHHHHHH
Q 042942 5 TNIS-NYCNFDSQLLTTFTSSLYIAGLIASLFASSVTRAFGRKASILVGGTA-FLAGSAL--GGA--AFNIYMLIFGRVL 78 (189)
Q Consensus 5 p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~~~~l 78 (189)
|.+. +++|.++.+.+++.+...++..++.++.+++.||++++ +..+..+ ...+..+ ... .++.+.+++..++
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4443 44788999999999999999999999999999999873 3333333 2222222 122 2366667778888
Q ss_pred HhhhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhcccccCCcchHHHHHhhH
Q 042942 79 LGVGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEKINGGWGWRISLAMAA 145 (189)
Q Consensus 79 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 145 (189)
.|++.+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+... .++...+.+.+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~~~~~~~~~~~ 363 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT---GQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC---CcccHHHHHHH
Confidence 999999999999999999998 8999999999999999999888886655432 25666665543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.85 E-value=7.9e-09 Score=82.39 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhh----hhhcc----hhHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHh
Q 042942 18 LTTFTSSLYIAGLIASLFASSVT----RAFGR----KASILVGGTAFLAGSALGGAA---------FNIYMLIFGRVLLG 80 (189)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~l~----d~~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G 80 (189)
.+++.....++..+..++.+.+. ||.|+ ++.+.++.++.+++.++.++. .+.+.+.+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 34444444455566666666554 44443 356677888888877776653 25666777888999
Q ss_pred hhhhhhhhhhhHHHhhcCCccccchhHHHHHHHHHHHHHHHHHhhhhccc
Q 042942 81 VGIGFANQSVPLYLSEMAPPKNRGAFNIGFQVSVGIGVLSDNLLNYGTEK 130 (189)
Q Consensus 81 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 130 (189)
++.+...+....++.|..|+++|++++++.+....+|..++|.+...+..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999776653
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=71.58 E-value=2.5 Score=17.88 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=10.9
Q ss_pred hHHHhhhhhcchhH
Q 042942 35 FASSVTRAFGRKAS 48 (189)
Q Consensus 35 ~~g~l~d~~Grr~~ 48 (189)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35778899999864
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=49.21 E-value=66 Score=25.41 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=8.1
Q ss_pred hhhhhhHHHhhcC
Q 042942 86 ANQSVPLYLSEMA 98 (189)
Q Consensus 86 ~~~~~~~~~~e~~ 98 (189)
..|....++.|++
T Consensus 370 l~P~~gI~l~Dy~ 382 (501)
T 2jln_A 370 LGPLAGIMISDYF 382 (501)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455566777776
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=48.54 E-value=63 Score=22.17 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhHHHhhhhhcc
Q 042942 23 SSLYIAGLIASLFASSVTRAFGR 45 (189)
Q Consensus 23 ~~~~~~~~~~~~~~g~l~d~~Gr 45 (189)
.-|.++..++..+.|++.||..+
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHccc
Confidence 34567777778888888887643
No 18
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=21.22 E-value=22 Score=15.41 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=8.1
Q ss_pred hhHHHhhhhhcc
Q 042942 34 LFASSVTRAFGR 45 (189)
Q Consensus 34 ~~~g~l~d~~Gr 45 (189)
++..|.+.||||
T Consensus 2 p~~~~~A~rYGR 13 (27)
T 2bzw_B 2 PPNLWAAQRYGR 13 (27)
T ss_dssp CGGGHHHHHHHH
T ss_pred chhHHHHHHHhH
Confidence 344577788887
No 19
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=21.04 E-value=2.9e+02 Score=21.85 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=24.3
Q ss_pred cccccCCchhHHHHHHHHH----HHHHHHHhhHH---HhhhhhcchhHHHHHHHHHHHHH
Q 042942 8 SNYCNFDSQLLTTFTSSLY----IAGLIASLFAS---SVTRAFGRKASILVGGTAFLAGS 60 (189)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g---~l~d~~Grr~~~~~~~~~~~~~~ 60 (189)
.+.+|+++...+....=.. +..+++.++.. ++.++.|+...+..-.+...+..
T Consensus 150 e~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l 209 (482)
T 4aw6_A 150 EEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSL 209 (482)
T ss_dssp HHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 4567777655554332222 22223322222 44566777665444444333333
Done!