BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042944
(637 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 203/512 (39%), Gaps = 69/512 (13%)
Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT- 230
LS + I+ F L +L L N+L+G + L +L CS L+ L + N L
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL-TSLGSCS--GLKFLNVSSNTLDF 137
Query: 231 -GSLPDITEFSSLQELHLFDNKLDGSFPEKF---RKPSPLVILNLDGNQLWGSLPDLSVF 286
G + + +SL+ L L N + G+ + L L + GN++ G + D+S
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRC 196
Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXX 346
L LDVS + + + LG S L+ LD+ GN L G + + +S ++LK ++
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 254
Query: 347 XXXXXXXXGWLPPFQLESI---GLLHCKLGPHFPKWLQSQ-KNYYFLDISDTEISDAVPS 402
G +PP L+S+ L K P +L LD+S AVP
Sbjct: 255 QFV-----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 403 WFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVT----S 458
+F +D L G +DLS N+F G +P N++ +
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 459 LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXFSG 517
L+LS+N FSGPI +LC L + +N +G++P L SG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 518 NF--------------------------------------LTF--FVGEIPPSLKKCNEL 537
L F GEIP L C L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
I +N+ +G IP WIG L LAIL L +N F G+IP L + LD + N +
Sbjct: 490 NWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 598 GAIPKCINNLTAMVEKASSNSTITHIYVYYRS 629
G IP + + K ++N YVY ++
Sbjct: 549 GTIPAAMFKQSG---KIAANFIAGKRYVYIKN 577
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 213/492 (43%), Gaps = 79/492 (16%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQI-SAISKSFGNMCGLKTLHLFDNNLTGQLP-ELFLN 210
G IPD+ L L+LS N A+ FG+ L++L L NN +G+LP + L
Sbjct: 279 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 338
Query: 211 LSGCSKNSLEILKLGGNKLTGSLPD-ITEFS-SLQELHLFDNKLDGS-FPEKFRKP-SPL 266
+ G L++L L N+ +G LP+ +T S SL L L N G P + P + L
Sbjct: 339 MRG-----LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 267 VILNLDGNQLWGSL-PDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
L L N G + P LS L L +S + L+GT+ LG LSKL L L+ N LEG
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 326 MITESHVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKN 385
I + +L Y+ LE++ L L P L + N
Sbjct: 454 EIPQ-------ELMYVK------------------TLETLILDFNDLTGEIPSGLSNCTN 488
Query: 386 YYFLDISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDF 445
++ +S+ ++ +P W G + +L++ + LS+N F
Sbjct: 489 LNWISLSNNRLTGEIPKWI------------------GRLENLAI-------LKLSNNSF 523
Query: 446 EGPVPPVPGNVTS---LNLSNNKFSGPI-SSLCSISGEYFS-------YLDVSDNLLSGE 494
G +P G+ S L+L+ N F+G I +++ SG+ + Y+ + ++ + E
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 495 LPDC--LLRWQXXXXXXXXXXXFSG--NFLT-FFVGEIPPSLKKCNELKIIDAGDNKFSG 549
LL +Q N + + G P+ + +D N SG
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 550 TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA 609
IP IG ++P L IL+L N GSIP + L + +LD S N + G IP+ ++ LT
Sbjct: 644 YIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 610 MVEKASSNSTIT 621
+ E SN+ ++
Sbjct: 703 LTEIDLSNNNLS 714
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 157/376 (41%), Gaps = 39/376 (10%)
Query: 271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMIT 328
L + + GS+ LT LD+S + L+G V+ LG S L+FL++ N+L+
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 329 ESHVSNLSKLKYMDXXXXXXXXXXXXGWL---PPFQLESIGLLHCKLGPHFPKWLQSQKN 385
S L+ L+ +D GW+ +L+ + + K+ + N
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 198
Query: 386 YYFLDISDTEISDAVP-----SWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDL 440
FLD+S S +P S T +L L +++
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL-------LNI 251
Query: 441 SSNDFEGPVPPVP-GNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499
SSN F GP+PP+P ++ L+L+ NKF+G I S + + + LD+S N G +P
Sbjct: 252 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 500 LRWQXXXXXXXXXXXFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558
FSG E+P +L K LK++D N+FSG +P + +
Sbjct: 312 GSCSLLESLALSSNNFSG--------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL--NSISGAIPKCINNLTAMVEKASS 616
L L L SN F G I NLC+ K L + L N +G IP ++N + +V
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS---- 419
Query: 617 NSTITHIYVYYRSATL 632
H+ Y S T+
Sbjct: 420 ----LHLSFNYLSGTI 431
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 181/432 (41%), Gaps = 67/432 (15%)
Query: 187 MCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITE--FSSLQ 243
M GLK L L N +G+LPE NLS SL L L N +G LP++ + ++LQ
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGT 302
EL+L +N G P S LV L+L N L G++P L L L + + L G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 303 VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXXXXXXXXXXGWLPPF-- 360
+ + L + LE L L N L G I S +SN + L ++ G +P +
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLT-----GEIPKWIG 508
Query: 361 QLESIGLLHCK---LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDXXXXXXX---X 414
+LE++ +L + P L ++ +LD++ + +P+ +
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 568
Query: 415 XXXXXXXEGTVLDLSLNYAG----YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPI 470
+ + + AG + GI S P N+TS + G
Sbjct: 569 GKRYVYIKNDGMKKECHGAGNLLEFQGI--RSEQLNRLSTRNPCNITS-----RVYGGHT 621
Query: 471 SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXFSGNFLTFFVGEIPPS 530
S +G +LD+S N+LSG +P +G +P
Sbjct: 622 SPTFDNNGSMM-FLDMSYNMLSGYIPK-------------------------EIGSMP-- 653
Query: 531 LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLD 590
L I++ G N SG+IP +GD L L IL L SN+ G IP+ + L+ + +D
Sbjct: 654 -----YLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 591 FSLNSISGAIPK 602
S N++SG IP+
Sbjct: 708 LSNNNLSGPIPE 719
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 139/334 (41%), Gaps = 30/334 (8%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
G IP SN + L L+LS N +S I S G++ L+ L L+ N L G++P+ + +
Sbjct: 404 TGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN 270
+LE L L N LTG +P ++ ++L + L +N+L G P+ + L IL
Sbjct: 463 K-----TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 271 LDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL------ 323
L N G++P +L L LD++ + NGT+ + + S +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 324 EGMITESH-VSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQS 382
+GM E H NL + + + P + S G H +
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRN-----PCNITSR-----VYGGHTSPTFDN 627
Query: 383 QKNYYFLDISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSS 442
+ FLD+S +S +P G++ D + G +DLSS
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 443 NDFEGPVPPVPGNVTSL---NLSNNKFSGPISSL 473
N +G +P +T L +LSNN SGPI +
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 164 MTALQHLNLSLNQISA---ISKSFGNMCG-LKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
+ +L+ L+LS N IS + + CG LK L + N ++G + ++S C +L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-----DVSRCV--NL 199
Query: 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS 279
E L + N + +P + + S+LQ L + NKL G F + L +LN+ NQ G
Sbjct: 200 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 280 LPDLSVFPFLTRLDVSDSRLNGTVSEGL-GRLSKLEFLDLFGNSLEGMI 327
+P L + L L +++++ G + + L G L LDL GN G +
Sbjct: 260 IPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 181 SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEF 239
S +F N + L + N L+G +P+ S L IL LG N ++GS+PD + +
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF 286
L L L NKLDG P+ + L ++L N L G +P++ F
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
+G IP +M L LNL N IS +I G++ GL L L N L G++P+ L
Sbjct: 642 SGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
+ L + L N L+G +P++ +F + +N +P PS
Sbjct: 701 T-----MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 748
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 135/512 (26%), Positives = 203/512 (39%), Gaps = 69/512 (13%)
Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT- 230
LS + I+ F L +L L N+L+G + L +L CS L+ L + N L
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL-TSLGSCS--GLKFLNVSSNTLDF 140
Query: 231 -GSLPDITEFSSLQELHLFDNKLDGSFPEKF---RKPSPLVILNLDGNQLWGSLPDLSVF 286
G + + +SL+ L L N + G+ + L L + GN++ G + D+S
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRC 199
Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXX 346
L LDVS + + + LG S L+ LD+ GN L G + + +S ++LK ++
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 257
Query: 347 XXXXXXXXGWLPPFQLESI---GLLHCKLGPHFPKWLQSQ-KNYYFLDISDTEISDAVPS 402
G +PP L+S+ L K P +L LD+S AVP
Sbjct: 258 QFV-----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 403 WFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS---- 458
+F +D L G +DLS N+F G +P N+++
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 459 LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXFSG 517
L+LS+N FSGPI +LC L + +N +G++P L SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 518 NF--------------------------------------LTF--FVGEIPPSLKKCNEL 537
L F GEIP L C L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
I +N+ +G IP WIG L LAIL L +N F G+IP L + LD + N +
Sbjct: 493 NWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 598 GAIPKCINNLTAMVEKASSNSTITHIYVYYRS 629
G IP + + K ++N YVY ++
Sbjct: 552 GTIPAAMFKQSG---KIAANFIAGKRYVYIKN 580
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 136/504 (26%), Positives = 213/504 (42%), Gaps = 103/504 (20%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQI-SAISKSFGNMCGLKTLHLFDNNLTGQLP-ELFLN 210
G IPD+ L L+LS N A+ FG+ L++L L NN +G+LP + L
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 211 LSGCSKNSLEILKLGGNKLTGSLPD-ITEFS-SLQELHLFDNKLDGS-FPEKFRKP-SPL 266
+ G L++L L N+ +G LP+ +T S SL L L N G P + P + L
Sbjct: 342 MRG-----LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 267 VILNLDGNQLWGSL-PDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
L L N G + P LS L L +S + L+GT+ LG LSKL L L+ N LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 326 MITESHVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKN 385
I + +L Y+ LE++ L L P L + N
Sbjct: 457 EIPQ-------ELMYVK------------------TLETLILDFNDLTGEIPSGLSNCTN 491
Query: 386 YYFLDISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDF 445
++ +S+ ++ +P W G + +L++ + LS+N F
Sbjct: 492 LNWISLSNNRLTGEIPKWI------------------GRLENLAI-------LKLSNNSF 526
Query: 446 EGPVPPVPGNVTS---LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCLLR 501
G +P G+ S L+L+ N F+G I +++ SG+ ++ N ++G+ R
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK------IAANFIAGK------R 574
Query: 502 WQXXXXXXXXXXXF-SGNFLTF-----------------------FVGEIPPSLKKCNEL 537
+ +GN L F + G P+ +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
+D N SG IP IG ++P L IL+L N GSIP + L + +LD S N +
Sbjct: 635 MFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 598 GAIPKCINNLTAMVEKASSNSTIT 621
G IP+ ++ LT + E SN+ ++
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLS 717
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 157/376 (41%), Gaps = 39/376 (10%)
Query: 271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMIT 328
L + + GS+ LT LD+S + L+G V+ LG S L+FL++ N+L+
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 329 ESHVSNLSKLKYMDXXXXXXXXXXXXGWL---PPFQLESIGLLHCKLGPHFPKWLQSQKN 385
S L+ L+ +D GW+ +L+ + + K+ + N
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201
Query: 386 YYFLDISDTEISDAVP-----SWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDL 440
FLD+S S +P S T +L L +++
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL-------LNI 254
Query: 441 SSNDFEGPVPPVP-GNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499
SSN F GP+PP+P ++ L+L+ NKF+G I S + + + LD+S N G +P
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 500 LRWQXXXXXXXXXXXFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558
FSG E+P +L K LK++D N+FSG +P + +
Sbjct: 315 GSCSLLESLALSSNNFSG--------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL--NSISGAIPKCINNLTAMVEKASS 616
L L L SN F G I NLC+ K L + L N +G IP ++N + +V
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS---- 422
Query: 617 NSTITHIYVYYRSATL 632
H+ Y S T+
Sbjct: 423 ----LHLSFNYLSGTI 434
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 117/432 (27%), Positives = 181/432 (41%), Gaps = 67/432 (15%)
Query: 187 MCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITE--FSSLQ 243
M GLK L L N +G+LPE NLS SL L L N +G LP++ + ++LQ
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGT 302
EL+L +N G P S LV L+L N L G++P L L L + + L G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 303 VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXXXXXXXXXXGWLPPF-- 360
+ + L + LE L L N L G I S +SN + L ++ G +P +
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLT-----GEIPKWIG 511
Query: 361 QLESIGLLHCK---LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDXXXXXXX---X 414
+LE++ +L + P L ++ +LD++ + +P+ +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571
Query: 415 XXXXXXXEGTVLDLSLNYAG----YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPI 470
+ + + AG + GI S P N+TS + G
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGI--RSEQLNRLSTRNPCNITS-----RVYGGHT 624
Query: 471 SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXFSGNFLTFFVGEIPPS 530
S +G +LD+S N+LSG +P +G +P
Sbjct: 625 SPTFDNNGSMM-FLDMSYNMLSGYIPK-------------------------EIGSMP-- 656
Query: 531 LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLD 590
L I++ G N SG+IP +GD L L IL L SN+ G IP+ + L+ + +D
Sbjct: 657 -----YLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 591 FSLNSISGAIPK 602
S N++SG IP+
Sbjct: 711 LSNNNLSGPIPE 722
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 139/334 (41%), Gaps = 30/334 (8%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
G IP SN + L L+LS N +S I S G++ L+ L L+ N L G++P+ + +
Sbjct: 407 TGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN 270
+LE L L N LTG +P ++ ++L + L +N+L G P+ + L IL
Sbjct: 466 K-----TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 271 LDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL------ 323
L N G++P +L L LD++ + NGT+ + + S +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 324 EGMITESH-VSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQS 382
+GM E H NL + + + P + S G H +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRN-----PCNITSR-----VYGGHTSPTFDN 630
Query: 383 QKNYYFLDISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSS 442
+ FLD+S +S +P G++ D + G +DLSS
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 443 NDFEGPVPPVPGNVTSL---NLSNNKFSGPISSL 473
N +G +P +T L +LSNN SGPI +
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 164 MTALQHLNLSLNQISA---ISKSFGNMCG-LKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
+ +L+ L+LS N IS + + CG LK L + N ++G + ++S C +L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-----DVSRCV--NL 202
Query: 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS 279
E L + N + +P + + S+LQ L + NKL G F + L +LN+ NQ G
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 280 LPDLSVFPFLTRLDVSDSRLNGTVSEGL-GRLSKLEFLDLFGNSLEGMI 327
+P L + L L +++++ G + + L G L LDL GN G +
Sbjct: 263 IPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 181 SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEF 239
S +F N + L + N L+G +P+ S L IL LG N ++GS+PD + +
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF 286
L L L NKLDG P+ + L ++L N L G +P++ F
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
+G IP +M L LNL N IS +I G++ GL L L N L G++P+ L
Sbjct: 645 SGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
+ L + L N L+G +P++ +F + +N +P PS
Sbjct: 704 T-----MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+ D F +T L LNL NQ+ +S F ++ L TL L +N L +F +L+
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-- 107
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
L+ L LGGN+L SLP + L+EL L N+L F K + L L+L
Sbjct: 108 ---QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
NQL S+P RL KL+ + LFGN +
Sbjct: 164 TNQLQ-SVP----------------------HGAFDRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+ D F +T L LNL NQ+ +S F ++ L TL L +N L +F +L+
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-- 107
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
L+ L LGGN+L SLP + L+EL L N+L F K + L L+L
Sbjct: 108 ---QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
NQL S+P RL KL+ + LFGN +
Sbjct: 164 TNQLQ-SVP----------------------HGAFDRLGKLQTITLFGNQFD 192
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
+G IPD+ S + L L+ S N +S + S ++ L + N ++G +P+ +
Sbjct: 114 SGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--- 169
Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
G + + N+LTG +P +L + L N L+G F ++L
Sbjct: 170 -GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 272 DGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
N L L + + L LD+ ++R+ GT+ +GL +L L L++ N+L G I +
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 44/202 (21%)
Query: 443 NDFEGPVPPVPGNVTSLN---LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499
N+ GP+PP +T L+ +++ SG I S + LD S N LSG LP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSI 145
Query: 500 LRWQXXXXXXXXXXXFSG-------NFLTFFV----------GEIPPSLKKCNELKIIDA 542
SG +F F G+IPP+ N L +D
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 543 GDNKFSGTIPAWIGDT----------------LPKLAI------LSLRSNQFHGSIPRNL 580
N G G L K+ + L LR+N+ +G++P+ L
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 581 CRLSKIQLLDFSLNSISGAIPK 602
+L + L+ S N++ G IP+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQ 286
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 527 IPPSLKKCNELKIIDAGD-NKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSK 585
IP SL L + G N G IP I L +L L + G+IP L ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 586 IQLLDFSLNSISGAIPKCINNLTAMV 611
+ LDFS N++SG +P I++L +V
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLV 152
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 250 NKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLG 308
N L G P K + L L + + G++PD LS L LD S + L+GT+ +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 309 RLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
L L + GN + G I +S+ S SKL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGS-FSKL 175
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 26/151 (17%)
Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE----------LFLNLSGC 214
T+L++L+LS N + +S +F + L+ L +NL Q+ E ++L++S
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 431
Query: 215 SK-----------NSLEILKLGGNKLTGS-LPDI-TEFSSLQELHLFDNKLDGSFPEKFR 261
+SLE+LK+ GN + LPDI TE +L L L +L+ P F
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 262 KPSPLVILNLDGNQLWGSLPDLSVFPFLTRL 292
S L +LN+ NQL S+PD +F LT L
Sbjct: 492 SLSSLQVLNMASNQL-KSVPD-GIFDRLTSL 520
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAI 180
+P+Y FSN+T L+HL+LS N+I +I
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 162 SNMTA-LQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
SN+ A + L+L N++S++ SK+F + L+ L+L DN L +F L +L
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-----NL 87
Query: 220 EILKLGGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
E L + NKL +LP + +L EL L N+L P F + L L+L N+L
Sbjct: 88 ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 278 GSLPDLSVFPFLT---RLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334
SLP VF LT L + +++L +L++L+ L L N L+ + E +
Sbjct: 147 -SLPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDS 203
Query: 335 LSKLKYM 341
L KLK +
Sbjct: 204 LEKLKML 210
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+P F + L+ L ++ N++ A+ F + L L L N L P +F +L+
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-- 133
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
L L LG N+L SLP + +SL+EL L++N+L F K + L L LD
Sbjct: 134 ---KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 273 GNQL 276
NQL
Sbjct: 190 NNQL 193
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+P+ F+ +T+L +LNLS NQ+ ++ F + LK L L N L +F L+
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-- 124
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFP 257
L+ L+L N+L S+PD +SLQ + L DN D + P
Sbjct: 125 ---QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 232 SLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFL 289
SLP+ E +SL +L+L NKL F K + L LNL NQL SLP+ VF L
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPN-GVFDKL 99
Query: 290 TRLD---VSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYM 341
T+L ++ ++L +L++L+ L L+ N L+ + + L+ L+Y+
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYI 153
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 34/190 (17%)
Query: 156 IPDYAFSNMTALQHLNLSLN-QISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSG 213
I AF+ + L+ L+LS N Q+ ++ +F + L TLHL L P LF L+
Sbjct: 70 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 128
Query: 214 CSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDG 273
+LQ L+L DN L + FR L L L G
Sbjct: 129 ---------------------------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 161
Query: 274 NQLWGSLPDLSVFPF--LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESH 331
N++ S+P+ + L RL + +R+ L +L L LF N+L + TE+
Sbjct: 162 NRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA- 219
Query: 332 VSNLSKLKYM 341
++ L L+Y+
Sbjct: 220 LAPLRALQYL 229
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 34/186 (18%)
Query: 160 AFSNMTALQHLNLSLN-QISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKN 217
AF+ + L+ L+LS N Q+ ++ +F + L TLHL L P LF L+
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA----- 129
Query: 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
+LQ L+L DN L + FR L L L GN++
Sbjct: 130 -----------------------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI- 165
Query: 278 GSLPDLSVFPF--LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNL 335
S+P+ + L RL + +R+ L +L L LF N+L + TE+ ++ L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPL 224
Query: 336 SKLKYM 341
L+Y+
Sbjct: 225 RALQYL 230
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPE-LFLNLSG 213
+PD F +T L +LNL+ NQ+ ++ K F + L L L N L LPE +F L+
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT- 181
Query: 214 CSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFP 257
L+ L+L N+L S+PD +SLQ + L DN D + P
Sbjct: 182 ----QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 218 SLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGN 274
+L L L GN+L SLP+ + ++L+EL L +N+L S P+ F K + L LNL N
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHN 143
Query: 275 QLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHV 332
QL SLP LT LD+S ++L +L++L+ L L+ N L+ + +
Sbjct: 144 QL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201
Query: 333 SNLSKLKYM 341
L+ L+Y+
Sbjct: 202 DRLTSLQYI 210
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 18/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 133
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L+ N++ P + L L++ N++
Sbjct: 134 -LELSSNTIS-DISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV---- 185
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 186 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 133
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L N++ P + L L++ N++
Sbjct: 134 -LELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV---- 185
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 186 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 17/102 (16%)
Query: 163 NMTALQHLNLSLNQISAISKSFGNMCG----LKTLHLFDNNLTGQLPELFLNLSGCSKNS 218
NM++L+ L++SLN ++ S ++ C + L+L N LTG ++ C
Sbjct: 401 NMSSLETLDVSLNSLN--SHAYDRTCAWAESILVLNLSSNMLTG-------SVFRCLPPK 451
Query: 219 LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL----DGSF 256
+++L L N++ D+T +LQEL++ N+L DG F
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVF 493
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 133
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L N++ P + L L++ N++
Sbjct: 134 -LELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV---- 185
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 186 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 19/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 133
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L+ F N++ P + L L++ N++
Sbjct: 134 -LELSSNTIS-DISALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERLDISSNKV---- 184
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 185 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 92/180 (51%), Gaps = 19/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 81 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 133
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L+ F N++ P + L L++ N++
Sbjct: 134 -LELSSNTIS-DISALSGLTSLQQLN-FGNQVTDLKP--LANLTTLERLDISSNKV---- 184
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 185 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+P F +T L L+LS NQI ++ F + L L+L +N L +F L+
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT-- 100
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPE 258
L+ L L N+L S+PD +SLQ++ L N D S P
Sbjct: 101 ---QLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 138
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L F N++ P + L L++ N++
Sbjct: 139 -LELSSNTIS-DISALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKV---- 189
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 190 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
N+T L + ++ NQI+ I+ N+ L L LF+N +T P NL+ ++
Sbjct: 85 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNR---- 137
Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N ++ + ++ +SLQ+L F N++ P + L L++ N++
Sbjct: 138 -LELSSNTIS-DISALSGLTSLQQLS-FGNQVTDLKP--LANLTTLERLDISSNKV---- 188
Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
D+SV LT L+ S N +S+ LG L+ L+ L L GN L+ + T + ++NL+ L
Sbjct: 189 SDISVLAKLTNLE-SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 247
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 32/192 (16%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELF-----LN 210
I + AFS + LQ L +S N + I + + L L + DN + +F +N
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMN 150
Query: 211 LSGCSKNSLE---------------ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGS 255
N LE L++ KLTG D+ E +L ELHL NK+
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAI 208
Query: 256 FPEKFRKPSPLVILNLDGNQLW----GSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLS 311
E + S L L L NQ+ GS LS P L L + +++L+ V GL L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGS---LSFLPTLRELHLDNNKLS-RVPAGLPDLK 264
Query: 312 KLEFLDLFGNSL 323
L+ + L N++
Sbjct: 265 LLQVVYLHTNNI 276
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
I AF + +Q L L N+I IS K F + LKTL+L+DN ++ +P F +L
Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--- 125
Query: 215 SKNSLEILKLGGN 227
NSL L L N
Sbjct: 126 --NSLTSLNLASN 136
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 172 LSLNQISAISKS--FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL 229
L+ N++ IS FG + L L L N LTG P F S ++ L+LG NK+
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-----HIQELQLGENKI 90
Query: 230 TG-SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274
S L+ L+L+DN++ P F + L LNL N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 222 LKLGGNKLTGSLPDITEFSS-LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
L+L N+LTG P+ E +S +QEL L +NK+ + F L LNL NQ+ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 281 P 281
P
Sbjct: 119 P 119
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLF----DNNLTGQLPELFLNL 211
+P+Y FSN+T L+HL+LS N+I +I + L+ LH + P F+
Sbjct: 142 LPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPE 258
+ L+ L L N+L S+PD +SLQ++ L N D S P
Sbjct: 196 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLF----DNNLTGQLPELFLNL 211
+P+Y FSN+T L+HL+LS N+I +I + L+ LH + P F+
Sbjct: 143 LPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPE 258
+ L+ L L N+L S+PD +SLQ++ L N D S P
Sbjct: 197 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLF----DNNLTGQLPELFLNL 211
+P+Y FSN+T L+HL+LS N+I +I + L+ LH + P F+
Sbjct: 142 LPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPE 258
+ L+ L L N+L S+PD +SLQ++ L N D S P
Sbjct: 196 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLF----DNNLTGQLPELFLNL 211
+P+Y FSN+T L+HL+LS N+I +I + L+ LH + P F+
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPE 258
+ L+ L L N+L S+PD +SLQ++ L N D S P
Sbjct: 195 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLF----DNNLTGQLPELFLNL 211
+P+Y FSN+T L+HL+LS N+I +I + L+ LH + P F+
Sbjct: 143 LPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 212 SGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPE 258
+ L+ L L N+L S+PD +SLQ++ L N D S P
Sbjct: 197 GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 165 TALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILK 223
T Q L L NQI+ + F ++ LK L+L N L G LP + S L +L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD----SLTQLTVLD 94
Query: 224 LGGNKLTGSLPDIT--EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP 281
LG N+LT LP L+EL + NKL P + + L L LD NQL S+P
Sbjct: 95 LGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIP 151
Query: 282 DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
RLS L LFGN
Sbjct: 152 ----------------------HGAFDRLSSLTHAYLFGN 169
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 218 SLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGN 274
+L L L GN+L SLP+ + ++L+EL L +N+L S P+ F K + L L L N
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHN 143
Query: 275 QLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP LTRLD+ +++L +L++L+ L L N L+ +
Sbjct: 144 QL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 38/168 (22%)
Query: 160 AFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS 218
A +T L +L L+ NQ+ ++ F + LK L L +N L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ----------------- 122
Query: 219 LEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276
SLPD + ++L L+L+ N+L F K + L L+LD NQL
Sbjct: 123 -------------SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Query: 277 WGSLPDLSVFPFLTRLD---VSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
SLP+ VF LT+L ++D++L RL+ L + L N
Sbjct: 170 -QSLPE-GVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPE-LFLNLSG 213
+PD F +T L +L L NQ+ ++ K F + L L L DNN LPE +F L+
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLT- 181
Query: 214 CSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLD 253
L+ L L N+L S+PD +SL + L +N D
Sbjct: 182 ----QLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNNPWD 218
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 161 FSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
F + L+ +N S N+I+ I + +F G+ + L N L ++F L SL
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-----SL 107
Query: 220 EILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274
+ L L N++T D SS++ L L+DN++ P F L LNL N
Sbjct: 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFD---NNLTGQLPELFLNLSGCSKN 217
+N+T L L+L+ NQI IS + L +LH F N +T P +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITPV-------ANXT 221
Query: 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
L LK+G NK+T P + S L L + N++ S + + L LN+ NQ
Sbjct: 222 RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQ-- 276
Query: 278 GSLPDLSVFPFLTRLD---VSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
+ D+SV L++L+ +++++L E +G L+ L L L N + +
Sbjct: 277 --ISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 115/272 (42%), Gaps = 42/272 (15%)
Query: 164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTG--------QLPELFLNLSGCS 215
+T L++LNL+ NQI+ IS N+ L L++ N +T L EL+LN S
Sbjct: 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123
Query: 216 KNS-------LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVI 268
S L LG N L ++ + L L + ++K+ P + L
Sbjct: 124 DISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYS 181
Query: 269 LNLDGNQL-----WGSLPDLSVF-PFLTRL-DVS----DSRLNG--------TVSEGLGR 309
L+L+ NQ+ SL L F ++ ++ D++ +RLN T L
Sbjct: 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLAN 241
Query: 310 LSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLH 369
LS+L +L++ N + + + V +L+KLK ++ L QL S+ L +
Sbjct: 242 LSQLTWLEIGTNQISDI---NAVKDLTKLKXLNVGSNQISDISVLNNLS--QLNSLFLNN 296
Query: 370 CKLGPHFPKWLQSQKNYYFLDISDTEISDAVP 401
+LG + + N L +S I+D P
Sbjct: 297 NQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 156 IPDYAFSNMTALQHLNL-SLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSG 213
IP YAF+ + +L+ L+L L ++S IS+ +F + L+ L+L NL ++P NL+
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP----NLTP 205
Query: 214 CSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
K L+ L L GN L+ P LQ+L + +++ F LV +NL
Sbjct: 206 LIK--LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
Query: 273 GNQL 276
N L
Sbjct: 264 HNNL 267
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 34/186 (18%)
Query: 160 AFSNMTALQHLNLSLN-QISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKN 217
AF+ +T L+ L+LS N Q+ + +F + L TLHL L P LF L+
Sbjct: 74 AFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLA----- 128
Query: 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
+LQ L+L DN L FR L L L GN++
Sbjct: 129 -----------------------ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI- 164
Query: 278 GSLPDLSVFPF--LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNL 335
S+P+ + L RL + + + L +L L LF N+L + E V L
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVP-L 223
Query: 336 SKLKYM 341
L+Y+
Sbjct: 224 RSLQYL 229
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 555 IGDTLP-KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPK 602
I D LP + +L+L NQ P N R S++ +LD NSIS P+
Sbjct: 19 IPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 289 LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYM 341
L LD+SD+ L+ S G LS L++L+L GN + + S NL+ L+ +
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 52/177 (29%)
Query: 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL--------TGQLPE--LFLNLSG-- 213
+LQ L LS N + ++ K+ + LK L D + + Q PE FLNLS
Sbjct: 388 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 447
Query: 214 ------CSKNSLEILKLGGNKLTGS---LPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
C +LE+L + N L LP LQEL++ NKL
Sbjct: 448 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLP------RLQELYISRNKLK----------- 490
Query: 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
+LPD S+FP L + ++ ++L RL+ L+ + L N
Sbjct: 491 --------------TLPDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 289 LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYM 341
L LD+SD+ L+ S G LS L++L+L GN + + S NL+ L+ +
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 52/177 (29%)
Query: 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL--------TGQLPE--LFLNLSG-- 213
+LQ L LS N + ++ K+ + LK L D + + Q PE FLNLS
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421
Query: 214 ------CSKNSLEILKLGGNKLTGS---LPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
C +LE+L + N L LP LQEL++ NKL
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLP------RLQELYISRNKLK----------- 464
Query: 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
+LPD S+FP L + +S ++L RL+ L+ + L N
Sbjct: 465 --------------TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
T L LNL +++ + G + L TL L N L L L G + +L +L +
Sbjct: 55 TRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS------LPLLGQTLPALTVLDV 107
Query: 225 GGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSP-LVILNLDGNQL 276
N+LT SLP + LQEL+L N+L + P P+P L L+L NQL
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 167 LQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGG 226
L++L +S NQ+ + + N LK + + DNN +LP+L SLE + G
Sbjct: 133 LEYLGVSNNQLEKLPE-LQNSSFLKIIDV-DNNSLKKLPDL--------PPSLEFIAAGN 182
Query: 227 NKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD----GNQLWGSLPD 282
N+L LP++ L ++ +N L K P + L+L+ GN + LP+
Sbjct: 183 NQLE-ELPELQNLPFLTAIYADNNSL---------KKLPDLPLSLESIVAGNNILEELPE 232
Query: 283 LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
L PFLT + +D+ L T+ + L L D
Sbjct: 233 LQNLPFLTTI-YADNNLLKTLPDLPPSLEALNVRD 266
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
T L LNL +++ + G + L TL L N L L L G + +L +L +
Sbjct: 55 TRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS------LPLLGQTLPALTVLDV 107
Query: 225 GGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSP-LVILNLDGNQL 276
N+LT SLP + LQEL+L N+L + P P+P L L+L NQL
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 237 TEFSSLQELHLFDNKLDGSFP------EKFRKPSPLVILNLDGNQLW----GSLPDLSVF 286
T FS LQ+L K++ P FR S L+IL LD NQ G+ L+
Sbjct: 48 TSFSRLQDLQFL--KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105
Query: 287 PFLTRLDVSDSRLNGTVSEG--LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMD 342
LT ++ L+G V G L+ LE L L N+++ + S N+ + +D
Sbjct: 106 EVLT---LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 237 TEFSSLQELHLFDNKLDGSFP------EKFRKPSPLVILNLDGNQLW----GSLPDLSVF 286
T FS LQ+L K++ P FR S L+IL LD NQ G+ L+
Sbjct: 48 TSFSRLQDLQFL--KVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105
Query: 287 PFLTRLDVSDSRLNGTVSEG--LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMD 342
LT ++ L+G V G L+ LE L L N+++ + S N+ + +D
Sbjct: 106 EVLT---LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF--------LTR 291
++ Q L+L+DN++ P F + + L L+LD NQ L+V P LT+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQ-------LTVLPAGVFDKLTQLTQ 82
Query: 292 LDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
L ++D++L L L + L N + ++
Sbjct: 83 LSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSD 120
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
T L LNL +++ + G + L TL L N L L L G + +L +L +
Sbjct: 55 TRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS------LPLLGQTLPALTVLDV 107
Query: 225 GGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSP-LVILNLDGNQL 276
N+LT SLP + LQEL+L N+L + P P+P L L+L NQL
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
T L LNL +++ + G + L TL L N L L L G + +L +L +
Sbjct: 55 TRLTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQS------LPLLGQTLPALTVLDV 107
Query: 225 GGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSP-LVILNLDGNQL 276
N+LT SLP + LQEL+L N+L + P P+P L L+L NQL
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 88
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 89 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 167 LQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNL--TGQLPELFLNLS 212
L+HL+LS N A I K FGNM LK L L +L + LP LN+S
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 221 ILKLGGNKL-TGSLPDITEFSSLQELHLFDNKL-----DGSFPEKFRKPSPLVILNLDGN 274
IL L N L T SL + ++ L +L+L +L DG+ P L L+L N
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHN 87
Query: 275 QLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
QL SLP L P LT LDVS +RL L L +L+ L L GN L+ +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+P AF ++ L+ L L N I +I S +F + L+ L L G+L L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL------GELKRLEYISEAA 151
Query: 215 SKN--SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFR 261
+ +L L LG L +P++T L+EL L N+LD P F+
Sbjct: 152 FEGLVNLRYLNLGMCNL-KDIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 219 LEILKLGGNKLTG-SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
LEIL+L N + + SL L LFDN+L + F S L L L N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI- 119
Query: 278 GSLPDLSV--FPFLTRLDVSD-SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334
S+P + P L RLD+ + RL L L +L+L GM + N
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL------GMCNLKDIPN 173
Query: 335 LSKLKYMD 342
L+ L ++
Sbjct: 174 LTALVRLE 181
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 219 LEILKLGGNKLTG-SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
LEIL+L N + + SL L LFDN+L + F S L L L N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI- 119
Query: 278 GSLPDLSV--FPFLTRLDVSD-SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334
S+P + P L RLD+ + RL L L +L+L GM + N
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL------GMCNLKDIPN 173
Query: 335 LSKLKYMD 342
L+ L ++
Sbjct: 174 LTALVRLE 181
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
+P AF ++ L+ L L N I +I S +F + L+ L L G+L L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL------GELKRLEYISEAA 151
Query: 215 SKN--SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFR 261
+ +L L LG L +P++T L+EL L N+LD P F+
Sbjct: 152 FEGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRLDLIRPGSFQ 199
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF--------LTR 291
++ Q L+L+DN++ P F + + L L+LD NQ L+V P LT+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-------LTVLPAGVFDKLTQLTQ 82
Query: 292 LDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
L ++D++L L L + L N + ++
Sbjct: 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 154 GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL--KTLHL-FDNNLTGQLPELFLN 210
G +P AF + L LNL+ NQI+ I N CG + +L F +N +P +F
Sbjct: 344 GKLP--AFGSEIKLASLNLAYNQITEIP---ANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 211 LSGCSKNSL-----EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
S +++ EI + G P + ++ ++L +N++ E F SP
Sbjct: 399 KSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458
Query: 266 LVILNLDGNQL 276
L +NL GN L
Sbjct: 459 LSSINLXGNXL 469
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL 299
++ Q LHL+ N++ P F + L LNL NQL +LP + VF LT+L +
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQL-TALP-VGVFDKLTKLTHLALHI 97
Query: 300 NGTVSEGLG---RLSKLEFLDLFGN 321
N S +G L L + LF N
Sbjct: 98 NQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDN 198
+P F +T L HL L +NQ+ +I F N+ L ++LF+N
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 156 IPDYAFSNMTALQHLNL-SLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSG 213
IP YAF+ + +L L+L L ++ IS+ +F + LK L+L N+ +P L L G
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL-TPLVG 219
Query: 214 CSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
LE L++ GN P SSL++L + ++++ F + LV LNL
Sbjct: 220 -----LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
Query: 273 GNQLWGSLP 281
N L SLP
Sbjct: 275 HNNL-SSLP 282
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF--------LTR 291
++ Q L+L+DN++ P F + + L L+LD NQ L+V P LT+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-------LTVLPAGVFDKLTQLTQ 90
Query: 292 LDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
L ++D++L L L + L N + ++
Sbjct: 91 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 128
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAI 180
+P+Y FSN+T L+HL+LS N+I +I
Sbjct: 165 LPEY-FSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAI 180
+P+Y FSN+T L+HL+LS N+I +I
Sbjct: 141 LPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
IP AFS L+ ++LS NQIS ++ +F + L +L L+ N +T +LP+
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE---- 101
Query: 215 SKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLD 253
SL++L L NK+ D + +L L L+DNKL
Sbjct: 102 GLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 225 GGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVI--------------- 268
G N SL + F++L+ELHL N++ P K K L +
Sbjct: 48 GDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC 107
Query: 269 ---LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
L LD N+L + L L L + +++L V LG LSKLE LDL GN +
Sbjct: 108 LSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN 164
Query: 326 MITESHVSNLSKLKYMD 342
++ L K+ ++D
Sbjct: 165 T---GGLTRLKKVNWID 178
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
IP AFS L+ ++LS NQIS ++ +F + L +L L+ N +T +LP+
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE---- 101
Query: 215 SKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLD 253
SL++L L NK+ D + +L L L+DNKL
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
F + RL+V + L+ + E G ++ FL +FG L+G
Sbjct: 51 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 90
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
F + RL+V + L+ + E G ++ FL +FG L+G
Sbjct: 38 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 77
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
F + RL+V + L+ + E G ++ FL +FG L+G
Sbjct: 33 FAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 72
>pdb|3UVH|A Chain A, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
pdb|3UVH|B Chain B, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
Length = 241
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 134 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 191
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 192 KKYRGFTIPEAFR 204
>pdb|3SWL|A Chain A, Crystal Structure Analysis Of H74a Mutant Of Human Clic1
Length = 236
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 129 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 186
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 187 KKYRGFTIPEAFR 199
>pdb|3P8W|A Chain A, Crystal Structure Analysis Of R29mE81M DOUBLE MUTANT OF
HUMAN CLIC1
Length = 241
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 134 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 191
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 192 KKYRGFTIPEAFR 204
>pdb|3O3T|A Chain A, Crystal Structure Analysis Of M32a Mutant Of Human Clic1
Length = 241
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 134 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 191
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 192 KKYRGFTIPEAFR 204
>pdb|4IQA|A Chain A, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
pdb|4IQA|B Chain B, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
Length = 236
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 129 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 186
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 187 KKYRGFTIPEAFR 199
>pdb|3TGZ|A Chain A, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
pdb|3TGZ|B Chain B, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
Length = 241
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 134 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 191
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 192 KKYRGFTIPEAFR 204
>pdb|3P90|A Chain A, Crystal Structure Analysis Of H207f Mutant Of Human Clic1
Length = 241
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 134 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 191
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 192 KKYRGFTIPEAFR 204
>pdb|1RK4|A Chain A, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
pdb|1RK4|B Chain B, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
Length = 243
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249
LK L + DN LT LPE S + + L GN+LT L D L + +
Sbjct: 136 LKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELT--LADCNLLPKLHIVQVVC 193
Query: 250 NKLDG-SFPEKFR 261
K G + PE FR
Sbjct: 194 KKYRGFTIPEAFR 206
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 220 EILKLGGNKL-TGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWG 278
+L LG N++ T + + F L+EL L +N + P F L L L N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-- 92
Query: 279 SLPDLSVFPF---LTRLDVSDSRL 299
L L VF LT+LD+S++++
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKI 116
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 37/150 (24%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLH--------------LFDNNL 200
IP A S++ L L L I+AI SF + LK L L+ NL
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 201 TGQLPELFLNLSGCSKNS-----------LEILKLGGNKLT---GSLPDITEFSSLQELH 246
T L+++ C+ + L L L N ++ GS+ + E LQE+
Sbjct: 227 TS------LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQ 278
Query: 247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276
L +L P FR + L +LN+ GNQL
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 237 TEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD 296
TE + L + NK P+ P + L LDGNQ +LS + LT +D+S+
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN 63
Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
+R++ ++ +++L L L N L
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLR 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,791,030
Number of Sequences: 62578
Number of extensions: 579717
Number of successful extensions: 1784
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 268
length of query: 637
length of database: 14,973,337
effective HSP length: 105
effective length of query: 532
effective length of database: 8,402,647
effective search space: 4470208204
effective search space used: 4470208204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)