Query 042944
Match_columns 637
No_of_seqs 403 out of 3833
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-54 2.6E-59 500.0 36.0 548 26-619 52-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.9E-53 1.7E-57 484.9 35.7 512 87-622 68-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 7.7E-41 1.7E-45 312.8 -10.8 486 88-622 45-542 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-36 4.1E-41 296.0 8.0 359 118-512 81-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 6.1E-36 1.3E-40 292.5 7.7 388 167-591 54-446 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.1E-38 4.5E-43 296.6 -11.0 481 62-597 49-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.8E-36 6.1E-41 310.3 -3.0 460 90-620 23-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.1E-34 4.7E-39 296.5 -4.8 488 58-618 21-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.8E-33 1E-37 274.2 -2.6 385 163-615 5-393 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.5E-32 9.7E-37 267.4 -3.4 382 116-567 8-393 (1255)
11 KOG4237 Extracellular matrix p 99.9 9.8E-26 2.1E-30 211.6 -1.6 133 88-230 67-201 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.7E-21 5.8E-26 223.4 30.0 126 384-513 778-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 2.2E-21 4.9E-26 224.0 27.8 339 181-546 551-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 4.1E-25 8.9E-30 207.5 -4.4 147 37-199 51-199 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 4.9E-21 1.1E-25 205.0 17.7 142 435-604 324-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-20 5.2E-25 199.7 17.5 198 384-622 262-459 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.3E-18 2.8E-23 187.8 13.5 246 312-597 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-18 2.5E-23 188.2 13.1 247 265-573 179-428 (754)
19 KOG0617 Ras suppressor protein 99.7 9.7E-20 2.1E-24 151.8 -3.2 159 453-626 32-191 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-19 9.9E-24 178.4 0.8 288 291-620 2-319 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 3.3E-18 7.1E-23 172.2 5.0 71 181-253 74-150 (319)
22 KOG0617 Ras suppressor protein 99.6 6.8E-18 1.5E-22 140.9 -5.4 164 109-282 27-191 (264)
23 KOG3207 Beta-tubulin folding c 99.4 3.3E-13 7.1E-18 129.8 4.4 209 85-300 118-339 (505)
24 KOG1259 Nischarin, modulator o 99.3 1.5E-13 3.2E-18 125.5 0.2 236 378-634 176-424 (490)
25 KOG0532 Leucine-rich repeat (L 99.3 6.9E-14 1.5E-18 138.5 -3.8 152 453-622 97-248 (722)
26 KOG3207 Beta-tubulin folding c 99.3 4.4E-13 9.5E-18 128.9 -0.3 87 381-467 118-210 (505)
27 KOG1909 Ran GTPase-activating 99.3 2.6E-12 5.7E-17 120.4 3.4 240 109-348 24-310 (382)
28 KOG1909 Ran GTPase-activating 99.2 2.2E-12 4.7E-17 120.9 0.7 251 140-445 30-310 (382)
29 PF14580 LRR_9: Leucine-rich r 99.2 8.2E-12 1.8E-16 110.1 4.0 104 89-201 20-126 (175)
30 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-11 5.9E-16 106.8 6.6 124 479-615 19-147 (175)
31 KOG0532 Leucine-rich repeat (L 99.1 1E-12 2.2E-17 130.4 -5.2 170 387-597 78-247 (722)
32 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3.1E-15 120.1 10.1 195 119-326 97-292 (394)
33 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.4E-15 120.9 8.2 200 92-307 97-297 (394)
34 KOG4658 Apoptotic ATPase [Sign 99.1 1.7E-10 3.8E-15 127.4 7.3 132 85-228 520-653 (889)
35 KOG1259 Nischarin, modulator o 99.1 3.7E-11 7.9E-16 110.1 1.0 127 241-373 285-412 (490)
36 KOG0531 Protein phosphatase 1, 99.0 6.8E-11 1.5E-15 122.5 -0.5 244 86-349 70-318 (414)
37 PLN03150 hypothetical protein; 98.9 1.6E-09 3.5E-14 117.4 7.6 113 480-601 419-532 (623)
38 PLN03150 hypothetical protein; 98.9 3.2E-09 6.8E-14 115.1 9.3 106 505-619 420-526 (623)
39 KOG0531 Protein phosphatase 1, 98.9 3.9E-10 8.5E-15 116.8 1.7 222 84-325 91-319 (414)
40 KOG1859 Leucine-rich repeat pr 98.9 4.9E-11 1.1E-15 121.8 -5.5 176 428-621 104-292 (1096)
41 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.9E-14 78.2 3.3 61 560-620 1-61 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 3E-09 6.6E-14 77.0 3.1 61 535-596 1-61 (61)
43 KOG4658 Apoptotic ATPase [Sign 98.8 1E-08 2.2E-13 113.6 7.1 103 140-249 545-651 (889)
44 KOG2120 SCF ubiquitin ligase, 98.7 6.4E-10 1.4E-14 102.1 -3.0 85 116-201 186-273 (419)
45 KOG4341 F-box protein containi 98.7 1.6E-09 3.4E-14 104.3 -2.0 304 88-415 138-458 (483)
46 KOG2120 SCF ubiquitin ligase, 98.6 2.7E-09 5.8E-14 98.1 -1.9 226 116-372 137-375 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.5 2.8E-08 6E-13 90.3 1.5 239 381-623 27-318 (388)
48 KOG2982 Uncharacterized conser 98.5 3.6E-08 7.9E-13 90.8 2.2 225 384-614 45-285 (418)
49 KOG2982 Uncharacterized conser 98.5 2.7E-08 6E-13 91.5 1.1 208 117-350 47-263 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.4 6.1E-08 1.3E-12 88.1 1.1 217 108-324 23-285 (388)
51 KOG1859 Leucine-rich repeat pr 98.4 3.9E-09 8.4E-14 108.3 -7.3 126 190-324 166-292 (1096)
52 KOG4341 F-box protein containi 98.3 5.7E-08 1.2E-12 93.8 -2.1 259 84-347 160-437 (483)
53 KOG4579 Leucine-rich repeat (L 98.3 2.2E-08 4.8E-13 81.3 -4.9 106 479-597 27-136 (177)
54 KOG4579 Leucine-rich repeat (L 98.2 2E-07 4.4E-12 75.8 -0.3 109 89-201 28-136 (177)
55 PRK15386 type III secretion pr 98.1 8.3E-06 1.8E-10 81.2 7.7 52 409-464 52-104 (426)
56 KOG3665 ZYG-1-like serine/thre 98.1 4.2E-06 9.1E-11 90.7 5.7 134 115-254 122-264 (699)
57 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 70.7 6.3 82 166-253 43-126 (233)
58 PF12799 LRR_4: Leucine Rich r 98.0 6E-06 1.3E-10 54.4 3.6 36 166-201 2-37 (44)
59 PF12799 LRR_4: Leucine Rich r 98.0 9.2E-06 2E-10 53.5 4.3 41 140-182 1-41 (44)
60 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.5E-10 70.5 5.6 104 88-198 42-150 (233)
61 KOG3665 ZYG-1-like serine/thre 98.0 7.7E-06 1.7E-10 88.7 4.9 131 140-277 122-263 (699)
62 PRK15386 type III secretion pr 97.8 7.8E-05 1.7E-09 74.4 8.8 165 429-623 48-221 (426)
63 KOG2123 Uncharacterized conser 97.4 1.2E-05 2.6E-10 73.8 -3.4 81 86-175 17-98 (388)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00078 1.7E-08 57.2 6.7 119 83-212 7-126 (129)
65 KOG2123 Uncharacterized conser 97.2 1.5E-05 3.3E-10 73.2 -4.2 99 114-223 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.1E-09 66.0 1.9 86 86-179 41-130 (260)
67 KOG1947 Leucine rich repeat pr 97.1 0.00011 2.3E-09 78.6 -0.1 37 163-199 241-280 (482)
68 KOG1947 Leucine rich repeat pr 97.0 0.00019 4E-09 76.8 0.7 242 84-349 184-440 (482)
69 PF13306 LRR_5: Leucine rich r 97.0 0.0027 5.8E-08 53.9 7.6 106 258-369 6-112 (129)
70 KOG2739 Leucine-rich acidic nu 96.9 0.00031 6.7E-09 64.6 1.0 83 115-201 43-129 (260)
71 KOG4308 LRR-containing protein 96.3 3E-05 6.6E-10 80.5 -11.5 192 411-621 89-303 (478)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.7E-08 34.2 1.0 21 585-606 1-21 (22)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.006 1.3E-07 33.2 1.1 19 167-185 2-20 (22)
74 KOG4308 LRR-containing protein 95.3 0.00033 7.1E-09 72.9 -8.4 111 90-201 89-217 (478)
75 KOG3864 Uncharacterized conser 94.7 0.0054 1.2E-07 54.3 -1.3 82 89-174 102-185 (221)
76 KOG3864 Uncharacterized conser 93.9 0.012 2.7E-07 52.1 -0.7 86 358-443 99-186 (221)
77 PF13504 LRR_7: Leucine rich r 93.6 0.047 1E-06 27.5 1.3 12 167-178 3-14 (17)
78 PF13504 LRR_7: Leucine rich r 93.2 0.03 6.5E-07 28.2 0.3 13 585-597 2-14 (17)
79 smart00370 LRR Leucine-rich re 91.5 0.18 4E-06 28.6 2.2 21 535-556 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 91.5 0.18 4E-06 28.6 2.2 21 535-556 2-22 (26)
81 smart00370 LRR Leucine-rich re 91.1 0.21 4.6E-06 28.3 2.2 21 140-161 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 91.1 0.21 4.6E-06 28.3 2.2 21 140-161 2-22 (26)
83 KOG0473 Leucine-rich repeat pr 91.0 0.0089 1.9E-07 54.0 -5.4 87 499-597 38-124 (326)
84 KOG0473 Leucine-rich repeat pr 90.8 0.0091 2E-07 54.0 -5.5 92 155-252 32-123 (326)
85 PF13516 LRR_6: Leucine Rich r 90.4 0.14 3.1E-06 28.4 1.1 21 115-135 2-22 (24)
86 PF13516 LRR_6: Leucine Rich r 88.8 0.12 2.5E-06 28.8 -0.1 16 584-599 2-17 (24)
87 smart00368 LRR_RI Leucine rich 86.1 0.91 2E-05 26.3 2.6 24 115-138 2-25 (28)
88 smart00365 LRR_SD22 Leucine-ri 85.3 0.53 1.1E-05 26.7 1.2 18 607-624 1-18 (26)
89 KOG4242 Predicted myosin-I-bin 82.3 6.2 0.00013 40.3 8.0 65 480-548 414-481 (553)
90 KOG4242 Predicted myosin-I-bin 80.8 7.9 0.00017 39.6 8.1 21 287-307 165-185 (553)
91 smart00364 LRR_BAC Leucine-ric 76.6 1.6 3.4E-05 24.7 1.1 17 166-182 3-19 (26)
92 KOG3763 mRNA export factor TAP 71.7 3.3 7.2E-05 43.0 2.9 36 115-150 218-254 (585)
93 smart00367 LRR_CC Leucine-rich 69.9 4.4 9.6E-05 22.8 2.0 17 115-131 2-19 (26)
94 KOG3763 mRNA export factor TAP 57.6 7.5 0.00016 40.6 2.4 36 163-198 216-254 (585)
95 TIGR00864 PCC polycystin catio 26.7 41 0.0009 42.8 2.3 30 542-572 2-31 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-54 Score=499.95 Aligned_cols=548 Identities=28% Similarity=0.397 Sum_probs=453.6
Q ss_pred HHHHHhhccccceeeeeeccccccccccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCc
Q 042944 26 QAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINR 105 (637)
Q Consensus 26 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 105 (637)
....++|.|.++.|+... . ++.++++++...... ...+..+++|+.|++++|.+.+..+
T Consensus 52 ~~~~~~c~w~gv~c~~~~--~-------------v~~L~L~~~~i~~~~------~~~~~~l~~L~~L~Ls~n~~~~~ip 110 (968)
T PLN00113 52 NSSADVCLWQGITCNNSS--R-------------VVSIDLSGKNISGKI------SSAIFRLPYIQTINLSNNQLSGPIP 110 (968)
T ss_pred CCCCCCCcCcceecCCCC--c-------------EEEEEecCCCccccC------ChHHhCCCCCCEEECCCCccCCcCC
Confidence 334568999998886211 1 124566665543322 2347789999999999998875433
Q ss_pred ccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc-hhhhc
Q 042944 106 PSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSF 184 (637)
Q Consensus 106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~~ 184 (637)
...+..+++|++|++++|.+.+..|. ..+ ++|++|++++|.+.+.+|. .++++++|++|++++|.+.. +|..+
T Consensus 111 --~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l-~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 111 --DDIFTTSSSLRYLNLSNNNFTGSIPR--GSI-PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred --hHHhccCCCCCEEECcCCccccccCc--ccc-CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhh
Confidence 12244779999999999998866654 233 8899999999999867776 78899999999999998875 78889
Q ss_pred CCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCC
Q 042944 185 GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKP 263 (637)
Q Consensus 185 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l 263 (637)
.++++|++|++++|.+.+..|..+..+. +|+.|++++|.+... +..+..+++|++|++++|.+.+..|..+.++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMK-----SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcC-----CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 9999999999999999888899999888 999999999988754 4457888999999999999988888889999
Q ss_pred CCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEE
Q 042944 264 SPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMD 342 (637)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 342 (637)
++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|+
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~ 338 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQ 338 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEE
Confidence 999999999998876554 355589999999999999888888889999999999999998876554 678899999999
Q ss_pred ccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCC
Q 042944 343 FSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422 (637)
Q Consensus 343 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~ 422 (637)
+++|.+....+..+..+.+|+.|++++|.+.+..|.++..+++|+.|++++|.+.+..+..+... ++|++|++++|.++
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~ 417 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFS 417 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEee
Confidence 99999987778788888999999999999988888888889999999999999988888777664 89999999999999
Q ss_pred CcccccccCCCCCCeEeCCCCcCcCCCCC---CCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhh
Q 042944 423 GTVLDLSLNYAGYPGIDLSSNDFEGPVPP---VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499 (637)
Q Consensus 423 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 499 (637)
+..+..+..++.|+.+++++|.+.+..+. .+++|++|++++|++.+..+..... ++|+.|++++|.+++..|..+
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCccChhh
Confidence 88888889999999999999999887665 3778999999999988777765443 789999999999998888899
Q ss_pred hccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCcc
Q 042944 500 LRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN 579 (637)
Q Consensus 500 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~ 579 (637)
..+++|+.|++++|.+. +.+|..+.++++|++|++++|.+++.+|..+. .+++|+.|+|++|++++.+|..
T Consensus 496 ~~l~~L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 496 GSLSELMQLKLSENKLS--------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFS-EMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred hhhhccCEEECcCCcce--------eeCChHHcCccCCCEEECCCCcccccCChhHh-CcccCCEEECCCCcccccCChh
Confidence 99999999999999887 36777888899999999999999888888776 6899999999999999889999
Q ss_pred ccCCCCCcEeeCCCCcccccccccccccccceeeccCCCe
Q 042944 580 LCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNST 619 (637)
Q Consensus 580 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~ 619 (637)
+..+++|+.|++++|++.+.+|.. +....+....+.||.
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999888854 334445555566665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.9e-53 Score=484.86 Aligned_cols=512 Identities=30% Similarity=0.416 Sum_probs=461.7
Q ss_pred CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCC
Q 042944 87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTA 166 (637)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~ 166 (637)
..+++.|+++++.+.+..+ ..+..+++|++|++++|.+.+..|..++..+++|++|++++|.+++.+|. ..+++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~---~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~ 141 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS---SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPN 141 (968)
T ss_pred CCcEEEEEecCCCccccCC---hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCC
Confidence 4589999999999888764 56777899999999999998778877774459999999999999877775 56899
Q ss_pred CCEEEcCCCcccc-hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCccE
Q 042944 167 LQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSLQE 244 (637)
Q Consensus 167 L~~L~L~~n~l~~-l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L~~ 244 (637)
|++|++++|.+.. +|..++++++|++|++++|.+.+..|..+.+++ +|++|++++|.+... +..+..+++|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 9999999999985 788999999999999999999889999999999 999999999998764 446888999999
Q ss_pred EEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcC
Q 042944 245 LHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323 (637)
Q Consensus 245 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 323 (637)
|++++|.+.+..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 99999999988999999999999999999999765554 55599999999999999988888999999999999999999
Q ss_pred CCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchh
Q 042944 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW 403 (637)
Q Consensus 324 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 403 (637)
.+..+. .+.++++|+.|++++|.+....+..+..+++|+.|++.+|.+.+..|.++..+++|+.|++++|.+.+..+.+
T Consensus 297 ~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 876655 6889999999999999999888888889999999999999999899999999999999999999999888888
Q ss_pred hhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCC
Q 042944 404 FWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEY 480 (637)
Q Consensus 404 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 480 (637)
+... ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|.. +++|+.|++++|++.+..+.... ..++
T Consensus 376 ~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 453 (968)
T PLN00113 376 LCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPS 453 (968)
T ss_pred HhCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCC
Confidence 7765 89999999999999999999999999999999999999877654 67899999999999987665433 2399
Q ss_pred ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944 481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560 (637)
Q Consensus 481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~ 560 (637)
|+.|++++|.+.+..|..+ ..++|+.|++++|++++ .+|..+.++++|+.|++++|.+.+.+|..+. +++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~ 523 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSG--------AVPRKLGSLSELMQLKLSENKLSGEIPDELS-SCK 523 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCC--------ccChhhhhhhccCEEECcCCcceeeCChHHc-Ccc
Confidence 9999999999998887765 46899999999999873 5677788999999999999999988998887 699
Q ss_pred CCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
+|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+++++++|++..
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.7e-41 Score=312.81 Aligned_cols=486 Identities=23% Similarity=0.318 Sum_probs=351.0
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL 167 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L 167 (637)
..+..+.++.|.+.... +.+.++..|++|++.+|++. ..|.++.++ ..++.|+.++|++. .+|. .+..+.+|
T Consensus 45 v~l~~lils~N~l~~l~----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l-~~l~~l~vs~n~ls-~lp~-~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR----EDLKNLACLTVLNVHDNKLS-QLPAAIGEL-EALKSLNVSHNKLS-ELPE-QIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhhcc----HhhhcccceeEEEeccchhh-hCCHHHHHH-HHHHHhhcccchHh-hccH-HHhhhhhh
Confidence 46788888988888774 66778889999999999887 456668888 88999999999998 8888 78889999
Q ss_pred CEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEc
Q 042944 168 QHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHL 247 (637)
Q Consensus 168 ~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 247 (637)
+.+++++|.+..+++.++.+..|+.++..+|++. ..|+.+..+. ++..+++.+|.+...+++...++.|++|+.
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~-----~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS-----KLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHH-----HHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998 7788888888 999999999999988888777889999999
Q ss_pred cCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCcc
Q 042944 248 FDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMI 327 (637)
Q Consensus 248 ~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 327 (637)
..|.++ ..|..++.+.+|+.|++.+|++. ..|.+.++..|++++++.|.+.....+...+++++..|++++|++...
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~- 267 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV- 267 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-
Confidence 999887 67888999999999999999997 555888899999999999998865556666899999999999999864
Q ss_pred chhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCC--CccEEEeeCCCCCCccchhhh
Q 042944 328 TESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK--NYYFLDISDTEISDAVPSWFW 405 (637)
Q Consensus 328 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~~~~~ 405 (637)
|. .+.-+.+|++||+++|.++. .+...+++ .|+.|.+.+|.+.+.-.+.+..-+ -|++|.= .+.+.++..-
T Consensus 268 Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~s- 340 (565)
T KOG0472|consen 268 PD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQS- 340 (565)
T ss_pred ch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCCC-
Confidence 33 46678889999999998872 23333333 444455554443221111111000 0111100 0000000000
Q ss_pred hcCCCccEEECCCCcCCC-----cccccccCCCCCCeEeCCCCcCcCCCCCCC-----CCccEEEcccccccCccccccc
Q 042944 406 DLSPNLYYLNLSHNHLEG-----TVLDLSLNYAGYPGIDLSSNDFEGPVPPVP-----GNVTSLNLSNNKFSGPISSLCS 475 (637)
Q Consensus 406 ~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~ 475 (637)
.+..-+. .........-+.+.|++++-+++.+....+ .-++..++++|++...+.....
T Consensus 341 -----------e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 341 -----------EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred -----------cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 0000000 000011122344555555555543222221 1256677777777655444333
Q ss_pred ccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhh
Q 042944 476 ISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWI 555 (637)
Q Consensus 476 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l 555 (637)
.. ...+.+.+++|.+. -+|..++.+++|..|++++|.+. .+|..+..+..|+.|+++.|++. .+|..+
T Consensus 410 lk-elvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln---------~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 410 LK-ELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN---------DLPEEMGSLVRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred HH-HHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh---------hcchhhhhhhhhheecccccccc-cchHHH
Confidence 21 33345666776665 67778888999999999999887 78888888888999999999987 888887
Q ss_pred hhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 556 GDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 556 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
.+ +..++.+-.++|++....|.++..+.+|..||+.+|.+. .+|..++++++|++|.+.||+++.
T Consensus 478 y~-lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 478 YE-LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hh-HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence 74 667777777889988666666899999999999999988 888899999999999999998873
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-36 Score=296.01 Aligned_cols=359 Identities=23% Similarity=0.290 Sum_probs=167.3
Q ss_pred cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcC
Q 042944 118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196 (637)
Q Consensus 118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~ 196 (637)
+.|++++|++....+..|.++ ++|+.+++.+|.++ .||. ......+|+.|+|.+|.|.++ .+.+..++.|+.||++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl-~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNL-PNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcC-Ccceeeeeccchhh-hccc-ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 345555555555444444444 55555555555555 5554 122233355555555555554 2344555555555555
Q ss_pred CCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCC
Q 042944 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQ 275 (637)
Q Consensus 197 ~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 275 (637)
.|.|+......|..-. ++++|++++|.++..-. .+..+.+|..|.|+.|+++...+..|+.+++|+.|++..|+
T Consensus 158 rN~is~i~~~sfp~~~-----ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKV-----NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hchhhcccCCCCCCCC-----CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 5555433223333322 45555555555543222 23344455555555555554444445555555555555555
Q ss_pred CCCC-CCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccC
Q 042944 276 LWGS-LPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSF 354 (637)
Q Consensus 276 ~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 354 (637)
+... ...+.++++|+.|.+..|++......+|..+.++++|+++.|.+.. +...++.++++|+.|++++|.|......
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-hhcccccccchhhhhccchhhhheeecc
Confidence 4322 2223334555555555555444444444455555555555554443 2233444445555555555544444444
Q ss_pred CCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCC
Q 042944 355 GWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAG 434 (637)
Q Consensus 355 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 434 (637)
. +..+++|+.|+|++|++....+..+..+ ..|++|++++|.+...-...|..+.+
T Consensus 312 ~------------------------WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 312 S------------------------WSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred h------------------------hhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhh
Confidence 4 4444444444444444444333333222 44444444444444333333444444
Q ss_pred CCeEeCCCCcCcCC------CCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEE
Q 042944 435 YPGIDLSSNDFEGP------VPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVL 508 (637)
Q Consensus 435 L~~L~l~~n~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 508 (637)
|+.||+++|.+... ....+++|+.|++.+|++... +.-.+.+.++|+.|+|.+|.+..+.+++|..+ .|++|
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 44444444433211 111134455555555555422 22222233556666666666655556666655 56665
Q ss_pred eccC
Q 042944 509 NLAN 512 (637)
Q Consensus 509 ~l~~ 512 (637)
.+..
T Consensus 445 v~nS 448 (873)
T KOG4194|consen 445 VMNS 448 (873)
T ss_pred hhcc
Confidence 5543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-36 Score=292.50 Aligned_cols=388 Identities=20% Similarity=0.222 Sum_probs=248.2
Q ss_pred CCEEEcCCCcccchhh-hcCCC--CCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCC-Cc
Q 042944 167 LQHLNLSLNQISAISK-SFGNM--CGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS-SL 242 (637)
Q Consensus 167 L~~L~L~~n~l~~l~~-~~~~l--~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~L 242 (637)
-+.|+.+++.+..+.. .+.+. +.-+.|++++|.+....+..|.+++ +|+.+++.+|.++. +|.++... ++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~-----nLq~v~l~~N~Lt~-IP~f~~~sghl 127 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP-----NLQEVNLNKNELTR-IPRFGHESGHL 127 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC-----cceeeeeccchhhh-cccccccccce
Confidence 3455666666655421 22222 2344577777777777777777777 78888887777773 44444444 68
Q ss_pred cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCC
Q 042944 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321 (637)
Q Consensus 243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 321 (637)
+.|+|.+|.|+....+.++.++.|+.||++.|.+..+.... ..-.++++|+|++|.|++.....|..+.+|..|.++.|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 88888888887777777888888888888888887654443 33567888888888888777777888888888888888
Q ss_pred cCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccc
Q 042944 322 SLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVP 401 (637)
Q Consensus 322 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 401 (637)
+++. .|...|.++++|+.|++..|.|....-..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++.....
T Consensus 208 ritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 208 RITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccc-cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 8876 455578888888888888888876666677777777777777777766555667777888888888888777666
Q ss_pred hhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCc
Q 042944 402 SWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYF 481 (637)
Q Consensus 402 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 481 (637)
.|++++ +.|++|++++|.|..+.++.+..+++|+.|+++.|+++...+..+.. ...|
T Consensus 287 g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----------------------L~~L 343 (873)
T KOG4194|consen 287 GWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----------------------LSQL 343 (873)
T ss_pred cccccc-chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----------------------HHHh
Confidence 777765 77888888888877777777777777777777777666544433110 0333
Q ss_pred cEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCC
Q 042944 482 SYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPK 561 (637)
Q Consensus 482 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~ 561 (637)
++|.|++|.+......+|..+.+|++|+|..|.++..+-+ -...+..+++|+.|++.+|+++ .||..-|..+++
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-----aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~ 417 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-----AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEA 417 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----chhhhccchhhhheeecCceee-ecchhhhccCcc
Confidence 4444444444433334455555555555555544321100 0112334555555555555554 455444444555
Q ss_pred CcEEeccCccccccCCccccCCCCCcEeeC
Q 042944 562 LAILSLRSNQFHGSIPRNLCRLSKIQLLDF 591 (637)
Q Consensus 562 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 591 (637)
|+.|||.+|.|....|..|..+ .|++|-+
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhh
Confidence 5555555555554445555554 4544443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-38 Score=296.57 Aligned_cols=481 Identities=25% Similarity=0.285 Sum_probs=367.9
Q ss_pred HHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCC
Q 042944 62 MMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN 141 (637)
Q Consensus 62 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~ 141 (637)
.++++.|......+ .+.++..+.+|++.+|.+.... ++++.+..++.++.++|++. ..|..+... ..
T Consensus 49 ~lils~N~l~~l~~-------dl~nL~~l~vl~~~~n~l~~lp----~aig~l~~l~~l~vs~n~ls-~lp~~i~s~-~~ 115 (565)
T KOG0472|consen 49 KLILSHNDLEVLRE-------DLKNLACLTVLNVHDNKLSQLP----AAIGELEALKSLNVSHNKLS-ELPEQIGSL-IS 115 (565)
T ss_pred hhhhccCchhhccH-------hhhcccceeEEEeccchhhhCC----HHHHHHHHHHHhhcccchHh-hccHHHhhh-hh
Confidence 67788877655442 2678899999999999999884 78888899999999999987 677778888 99
Q ss_pred CcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI 221 (637)
Q Consensus 142 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~ 221 (637)
|+.|++++|.+. ++++ .++.+..|+.++..+|++.++|+++..+.+|..+++.+|.+....|..+. ++ .|++
T Consensus 116 l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-----~L~~ 187 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-----RLKH 187 (565)
T ss_pred hhhhhcccccee-ecCc-hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-----HHHh
Confidence 999999999998 8888 78899999999999999999999999999999999999999955555544 88 9999
Q ss_pred EEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCC-CCCCCCEEEccCCcCC
Q 042944 222 LKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS-VFPFLTRLDVSDSRLN 300 (637)
Q Consensus 222 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~ 300 (637)
|+...|-+...+++++.+.+|.-|++..|++. ..| .|.+|..|++++++.|++........ +++++..||+..|+++
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 99999999999999999999999999999998 445 79999999999999999986666655 5999999999999999
Q ss_pred CCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCC--ceeEEec--cCCcCCCCc
Q 042944 301 GTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF--QLESIGL--LHCKLGPHF 376 (637)
Q Consensus 301 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l--~~~~~~~~~ 376 (637)
..|..+.-+++|+.|++++|.+++..+ .++++ +|+.|.+.+|++...........+ -|++|.= .+-.+....
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 667778889999999999999997543 58888 999999999998643332221111 1222111 000000000
Q ss_pred cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCC--CCCCeEeCCCCcCcCCCCCCCC
Q 042944 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY--AGYPGIDLSSNDFEGPVPPVPG 454 (637)
Q Consensus 377 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~ 454 (637)
+.- -..-+ ......+.. . ...+.+.|++++-.++..+...|..- .-.+.+++++|++.. .|..++
T Consensus 342 -~~~-----e~~~t----~~~~~~~~~-~-~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~ 408 (565)
T KOG0472|consen 342 -GGT-----ETAMT----LPSESFPDI-Y-AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLV 408 (565)
T ss_pred -ccc-----cccCC----CCCCcccch-h-hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhH
Confidence 000 00000 000001111 1 11355555665555554444333222 135566666666653 333322
Q ss_pred ----CccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc
Q 042944 455 ----NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS 530 (637)
Q Consensus 455 ----~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 530 (637)
.++.+.+++|.+......++.. ++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|.+
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l--~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr---------~lP~~ 476 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQL--QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR---------MLPEC 476 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhh--hcceeeecccchhh-hcchhhhhhhhhheecccccccc---------cchHH
Confidence 2445677777776555544444 89999999999887 78899999999999999999988 89999
Q ss_pred ccCCCCCcEEEcCCCcccccCChh-hhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 531 LKKCNELKIIDAGDNKFSGTIPAW-IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 531 l~~l~~L~~L~ls~n~l~~~~~~~-l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
+..+..|+.+-.++|++. .++.. +. ++.+|.+|||.+|.+. .+|..++++++|++|++++|++.
T Consensus 477 ~y~lq~lEtllas~nqi~-~vd~~~l~-nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIG-SVDPSGLK-NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhcccccc-ccChHHhh-hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 988889999999999997 66655 65 8999999999999998 89999999999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-36 Score=310.34 Aligned_cols=460 Identities=26% Similarity=0.333 Sum_probs=282.6
Q ss_pred CcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944 90 LRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH 169 (637)
Q Consensus 90 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 169 (637)
+..|+++.|.+-..+ .+...+.-+|++|++++|.+.+ .|..+..+ ++|+.|+++.|.|. ..|. ...++.+|++
T Consensus 23 ~~~ln~~~N~~l~~p---l~~~~~~v~L~~l~lsnn~~~~-fp~~it~l-~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP---LEFVEKRVKLKSLDLSNNQISS-FPIQITLL-SHLRQLNLSRNYIR-SVPS-SCSNMRNLQY 95 (1081)
T ss_pred HHhhhccccccccCc---hHHhhheeeeEEeecccccccc-CCchhhhH-HHHhhcccchhhHh-hCch-hhhhhhcchh
Confidence 444455444443322 1223333335555555554442 23334444 44555555555554 4443 4445555555
Q ss_pred EEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccC
Q 042944 170 LNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249 (637)
Q Consensus 170 L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 249 (637)
++|.+|.+..+|..+..+.+|++|+++.|.+. ..|..+..+. .++.+..++|..... ++.. .++.+++..
T Consensus 96 lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt-----~~~~~~~s~N~~~~~---lg~~-~ik~~~l~~ 165 (1081)
T KOG0618|consen 96 LNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLT-----AEEELAASNNEKIQR---LGQT-SIKKLDLRL 165 (1081)
T ss_pred heeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhh-----HHHHHhhhcchhhhh---hccc-cchhhhhhh
Confidence 55555555555555555555555555555444 4444444444 444444444411111 1111 144444444
Q ss_pred CcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 042944 250 NKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329 (637)
Q Consensus 250 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 329 (637)
|.+.+..+.....++. . |+++.|.+. . ..+..+++|+.+....|.+...
T Consensus 166 n~l~~~~~~~i~~l~~--~-----------------------ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l--- 214 (1081)
T KOG0618|consen 166 NVLGGSFLIDIYNLTH--Q-----------------------LDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL--- 214 (1081)
T ss_pred hhcccchhcchhhhhe--e-----------------------eecccchhh-h--hhhhhccchhhhhhhhcccceE---
Confidence 4444333333333333 3 555555443 1 1234445555555555544431
Q ss_pred hhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCC
Q 042944 330 SHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSP 409 (637)
Q Consensus 330 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 409 (637)
-..-++++.|+.+.|.++ ....-....++++++++.+.+. .+|+|+..+.+|+.++...|.++. .+..+... .
T Consensus 215 --~~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~-~ 287 (1081)
T KOG0618|consen 215 --EISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRI-T 287 (1081)
T ss_pred --EecCcchheeeeccCcce--eeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhh-h
Confidence 122345555555555554 1112223345666666666665 455889999999999999998854 44444443 6
Q ss_pred CccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCC----CCccEEEcccccccCcccccccccCCCccEEe
Q 042944 410 NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVP----GNVTSLNLSNNKFSGPISSLCSISGEYFSYLD 485 (637)
Q Consensus 410 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 485 (637)
+|+.|.+..|.+.- ++.......+|++|++..|.+....+..+ ..+..|+.+.|++...... .....+.|+.|+
T Consensus 288 ~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY-EENNHAALQELY 365 (1081)
T ss_pred hHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc-cchhhHHHHHHH
Confidence 88888888888863 44446678889999999998875544332 2467777788887654422 222228899999
Q ss_pred CCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc-ccCCCCCcEEEcCCCcccccCChhhhhcCCCCcE
Q 042944 486 VSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAI 564 (637)
Q Consensus 486 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~ 564 (637)
+.+|.+++.....+.+.++|+.|+|++|++. .+|++ +.+++.|++|++|+|.++ .+|..+. +++.|++
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~---------~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~t 434 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN---------SFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHT 434 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccc---------cCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHH
Confidence 9999999988889999999999999999988 66664 788999999999999998 8998888 7999999
Q ss_pred EeccCccccccCCccccCCCCCcEeeCCCCcccc-cccccccccccceeeccCCCee
Q 042944 565 LSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG-AIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 565 L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~l~l~~n~l 620 (637)
|....|++. ..| .+.+++.|+.+|+|.|.++. .+|....+ +.|++|+++||.-
T Consensus 435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 999999998 777 68899999999999999874 44444444 8999999999973
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-34 Score=296.53 Aligned_cols=488 Identities=22% Similarity=0.252 Sum_probs=342.9
Q ss_pred HHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHh
Q 042944 58 ILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFK 137 (637)
Q Consensus 58 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 137 (637)
+.+..+++..|.+..- .+.++...-+|+.|++++|.+.+.+ ..+..+++|+.|+++.|.|.. .|.....
T Consensus 21 ~~~~~ln~~~N~~l~~------pl~~~~~~v~L~~l~lsnn~~~~fp----~~it~l~~L~~ln~s~n~i~~-vp~s~~~ 89 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSR------PLEFVEKRVKLKSLDLSNNQISSFP----IQITLLSHLRQLNLSRNYIRS-VPSSCSN 89 (1081)
T ss_pred HHHHhhhccccccccC------chHHhhheeeeEEeeccccccccCC----chhhhHHHHhhcccchhhHhh-Cchhhhh
Confidence 3455666666644321 1344556667999999999998873 677778999999999999884 5566777
Q ss_pred hcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCC
Q 042944 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKN 217 (637)
Q Consensus 138 ~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~ 217 (637)
. .+|++|.|.+|.+. .+|. .+..+++|++|++++|.+..+|..+..+..+..+..++|... ..++..
T Consensus 90 ~-~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~------ 156 (1081)
T KOG0618|consen 90 M-RNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKI----QRLGQT------ 156 (1081)
T ss_pred h-hcchhheeccchhh-cCch-hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhh----hhhccc------
Confidence 7 99999999999998 8888 799999999999999999999999999999999999999322 122222
Q ss_pred cccEEEcCCCCCCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccC
Q 042944 218 SLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD 296 (637)
Q Consensus 218 ~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (637)
.++.+++..|.+... +.++..+.. .|++++|.+. ...+..+.+|+.+..+.|++.... ..-++++.|+.++
T Consensus 157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---ISGPSLTALYADH 228 (1081)
T ss_pred cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---ecCcchheeeecc
Confidence 467777777766543 234444444 6999999986 244677888999999998876322 1267899999999
Q ss_pred CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc
Q 042944 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF 376 (637)
Q Consensus 297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 376 (637)
|.++.... -....+|+.+++++|.+... + .++..+.+|+.++...|.++ ..+.......+|+.+.+..|.+. ..
T Consensus 229 n~l~~~~~--~p~p~nl~~~dis~n~l~~l-p-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yi 302 (1081)
T KOG0618|consen 229 NPLTTLDV--HPVPLNLQYLDISHNNLSNL-P-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YI 302 (1081)
T ss_pred Ccceeecc--ccccccceeeecchhhhhcc-h-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hC
Confidence 99984332 22345799999999999874 4 68999999999999999994 44555667778888888888776 44
Q ss_pred cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCc
Q 042944 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNV 456 (637)
Q Consensus 377 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L 456 (637)
|......+.|+.|+|..|.+.......+......+..|+.+.|++.......-.. .+.|
T Consensus 303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~---------------------~~~L 361 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN---------------------HAAL 361 (1081)
T ss_pred CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh---------------------hHHH
Confidence 5556778888888888888877554333333234777777777765433222222 3355
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE 536 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~ 536 (637)
+.|++.+|.+++..-..... .++|+.|+|++|++.......+.+++.|++|+++||+++ .+|..+.+++.
T Consensus 362 q~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~---------~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT---------TLPDTVANLGR 431 (1081)
T ss_pred HHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh---------hhhHHHHhhhh
Confidence 56666666655432111111 167777777777776444456677777888888888777 77777777778
Q ss_pred CcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944 537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS 615 (637)
Q Consensus 537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l 615 (637)
|++|...+|++. ..| .+. .++.|+.+|++.|.++.. +|..... ++|++||++||.-...--+.|..+..+...++
T Consensus 432 L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred hHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheec
Confidence 888887777776 667 455 477788888888777633 3333322 67788888887633233344555555555444
Q ss_pred CCC
Q 042944 616 SNS 618 (637)
Q Consensus 616 ~~n 618 (637)
.-+
T Consensus 508 ~~~ 510 (1081)
T KOG0618|consen 508 TLN 510 (1081)
T ss_pred ccC
Confidence 433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.8e-33 Score=274.20 Aligned_cols=385 Identities=26% Similarity=0.328 Sum_probs=260.3
Q ss_pred CCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCC
Q 042944 163 NMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS 240 (637)
Q Consensus 163 ~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 240 (637)
-++-.+-.++++|.++. +|..+..|++++.|.+....+. ..|+.++.+. +|++|.+++|++......+..++
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-----kLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-----KLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh-----hhhhhhhhhhhhHhhhhhhccch
Confidence 34556677888888774 7888888888888888888776 7788888887 88888888888877666777777
Q ss_pred CccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecC
Q 042944 241 SLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319 (637)
Q Consensus 241 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 319 (637)
.|+.+.+++|++.. -.|..+-.+..|..|++++|++...+..+....++-.|+|++|.|..+.-..+.+++.|-.|+++
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 77777777776642 23334445566666666666666555555555555666666666654433444455555566666
Q ss_pred CCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCC-C
Q 042944 320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS-D 398 (637)
Q Consensus 320 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~-~ 398 (637)
+|++....| ....+..|++|++++|++... -...+..+++|+.|.+++.+-+ +
T Consensus 159 ~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hf------------------------QLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 159 NNRLEMLPP--QIRRLSMLQTLKLSNNPLNHF------------------------QLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred cchhhhcCH--HHHHHhhhhhhhcCCChhhHH------------------------HHhcCccchhhhhhhcccccchhh
Confidence 665554322 245555555555555554311 1122334555566666654322 2
Q ss_pred ccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccC
Q 042944 399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG 478 (637)
Q Consensus 399 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 478 (637)
..|..+.++ .+|..+|++.|.+. ..|..+..++ +|+.|+|++|+|+........+
T Consensus 213 N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~---------------------~LrrLNLS~N~iteL~~~~~~W-- 267 (1255)
T KOG0444|consen 213 NIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLR---------------------NLRRLNLSGNKITELNMTEGEW-- 267 (1255)
T ss_pred cCCCchhhh-hhhhhccccccCCC-cchHHHhhhh---------------------hhheeccCcCceeeeeccHHHH--
Confidence 233333332 55666666666554 3444444444 5555555555555433333333
Q ss_pred CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944 479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~ 558 (637)
.+|+.|++|.|+++ .+|++++.+++|+.|+..+|+++ |. .+|++++.+..|+.+..++|.+. .+|.++. .
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~------Fe-GiPSGIGKL~~Levf~aanN~LE-lVPEglc-R 337 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT------FE-GIPSGIGKLIQLEVFHAANNKLE-LVPEGLC-R 337 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc------cc-CCccchhhhhhhHHHHhhccccc-cCchhhh-h
Confidence 78899999999998 89999999999999999999988 44 59999999999999999999997 9999999 5
Q ss_pred CCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS 615 (637)
Q Consensus 559 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l 615 (637)
|++|+.|.|++|++- .+|+++.-++.|+.||+..|+-.-..|.-=..-++|+.-+|
T Consensus 338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 999999999999987 79999999999999999999876333332222245554444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.5e-32 Score=267.36 Aligned_cols=382 Identities=23% Similarity=0.319 Sum_probs=213.3
Q ss_pred CccEEECCCCCCC-chhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944 116 SLTLLDLSSCGLS-NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH 194 (637)
Q Consensus 116 ~L~~L~L~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~ 194 (637)
-.+-.|+++|.++ +..|..+... +.++.|.|....+. .+|. .++.+.+|++|.+++|++.++-..+..++.|+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 3444555555554 2334444444 55555555555555 5555 45555555555555555555555555555555555
Q ss_pred cCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCC
Q 042944 195 LFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDG 273 (637)
Q Consensus 195 l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 273 (637)
+..|++.. -.|..+-++. .|..|++++|++.+.+..+...+++-.|++++|+|..+....|.+++.|-.|++++
T Consensus 85 ~R~N~LKnsGiP~diF~l~-----dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLK-----DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred hhccccccCCCCchhcccc-----cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 55554432 1233344444 55555555555555555555555555556666655544445555666666666666
Q ss_pred CCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCc-cchhhhcCCCCCcEEEccCCcccccc
Q 042944 274 NQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM-ITESHVSNLSKLKYMDFSFNSLALNF 352 (637)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~ 352 (637)
|++...+|....+..|+.|+|++|++...-...+..+++|+.|.+++..-+-. +|. .+..+.+|..+|++.|.+.
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp--- 235 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP--- 235 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC---
Confidence 66665555555566666666666665543333344555566666665543211 222 3444555555555555554
Q ss_pred cCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCC
Q 042944 353 SFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY 432 (637)
Q Consensus 353 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 432 (637)
..|+.+-.+++|+.|+|++|+|+..... ...+ .+|++|+++.|.++ ..|+.+..+
T Consensus 236 ----------------------~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W-~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 236 ----------------------IVPECLYKLRNLRRLNLSGNKITELNMT-EGEW-ENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred ----------------------cchHHHhhhhhhheeccCcCceeeeecc-HHHH-hhhhhhccccchhc-cchHHHhhh
Confidence 5566667777777777777777653321 1122 57888888888877 566667777
Q ss_pred CCCCeEeCCCCcCcCC-CCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEecc
Q 042944 433 AGYPGIDLSSNDFEGP-VPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLA 511 (637)
Q Consensus 433 ~~L~~L~l~~n~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 511 (637)
+.|+.|++.+|+++.. +|....+| ..|+.+..++|.+. .+|+.++.|++|+.|.|+
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL----------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKL----------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhh----------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 7777777666665421 11111111 44555555666555 666777777777777777
Q ss_pred CccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEec
Q 042944 512 NNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSL 567 (637)
Q Consensus 512 ~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L 567 (637)
.|.+. .+|+.+.-++.|+.||+..|.-. .+|..-.+.-++|+.-++
T Consensus 348 ~NrLi---------TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 348 HNRLI---------TLPEAIHLLPDLKVLDLRENPNL-VMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred cccee---------echhhhhhcCCcceeeccCCcCc-cCCCCcchhhhcceeeec
Confidence 77666 66666666777777777766544 444333222244544444
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=9.8e-26 Score=211.61 Aligned_cols=133 Identities=26% Similarity=0.384 Sum_probs=107.6
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCC-CCCCCCCCchhccCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNS-NQLAGPIPDYAFSNMTA 166 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~-n~l~~~l~~~~~~~l~~ 166 (637)
+....++|..|.|+.+++ .+|..+++|+.|||++|.|+.+.|++|..+ ++|..|-+.+ |+|+ .+|.++|.++..
T Consensus 67 ~~tveirLdqN~I~~iP~---~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPP---GAFKTLHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccCCcccCCh---hhccchhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 467888999999999886 445555899999999999998888888777 6666655555 8898 899889999999
Q ss_pred CCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCC
Q 042944 167 LQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT 230 (637)
Q Consensus 167 L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~ 230 (637)
|+.|.+.-|++.-+ .+.|..+++|..|.+.+|.+....-..|..+. .++.+.+..|...
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-----~i~tlhlA~np~i 201 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-----AIKTLHLAQNPFI 201 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-----ccchHhhhcCccc
Confidence 99999998888885 56788999999999999988755555777777 8888888877643
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.7e-21 Score=223.40 Aligned_cols=126 Identities=18% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccc
Q 042944 384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSN 463 (637)
Q Consensus 384 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~ 463 (637)
++|+.|++++|......|..+..+ ++|+.|++++|.....+|... .+++|+.|++++|......|..+.++++|++++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 344555555544444344443332 455555555443322333222 344555555555544333333344444444444
Q ss_pred ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCc
Q 042944 464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANN 513 (637)
Q Consensus 464 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 513 (637)
|.+...+..+.. .++|+.|++++|.-...+|..+..+++|+.+++++|
T Consensus 856 n~i~~iP~si~~--l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 856 TGIEEVPWWIEK--FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCccChHHHhc--CCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 444432221111 144444444443222233333444444444444444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.2e-21 Score=224.01 Aligned_cols=339 Identities=21% Similarity=0.220 Sum_probs=254.6
Q ss_pred hhhcCCCCCCcEEEcCCCcC------CCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC
Q 042944 181 SKSFGNMCGLKTLHLFDNNL------TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG 254 (637)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~i------~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 254 (637)
+.+|.+|++|+.|.+..+.. ....|..+..++ ++|+.|++.++.+...+..+ ...+|++|++.++.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-
Confidence 35688889999988865532 224566666554 27999999998888665554 5678999999999887
Q ss_pred CCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcC
Q 042944 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334 (637)
Q Consensus 255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 334 (637)
..+..+..+++|+.++++++......+.+..+++|+.|++++|.....+|..+..+++|+.|++++|......+.. .+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--IN 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CC
Confidence 4566778889999999998765556667777899999999998766678888889999999999998654444442 27
Q ss_pred CCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc------cchhhhhcC
Q 042944 335 LSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA------VPSWFWDLS 408 (637)
Q Consensus 335 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~------~~~~~~~~~ 408 (637)
+++|+.|++++|......+. ...+|+.|++.++.+. .+|..+ .+++|++|++.++..... .+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 88999999999865444332 2457889999998875 345433 578888888876432111 111122335
Q ss_pred CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC--CCCccEEEcccccccCcccccccccCCCccEEeC
Q 042944 409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV--PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDV 486 (637)
Q Consensus 409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 486 (637)
++|++|++++|.....+|..+..+++|+.|++++|...+..|.. +++|++|++++|......+... ++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~----~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS----TNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc----cccCEeEC
Confidence 79999999999888788888999999999999999755555543 6889999999986554444322 78999999
Q ss_pred CCCCCcccCchhhhccCCCcEEeccCcc-CCCCccccccccCCccccCCCCCcEEEcCCCc
Q 042944 487 SDNLLSGELPDCLLRWQALAVLNLANNN-FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK 546 (637)
Q Consensus 487 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 546 (637)
++|.++ .+|..+..+++|+.|++++|+ +. .+|..+..+++|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~---------~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ---------RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcC---------ccCcccccccCCCeeecCCCc
Confidence 999998 688889999999999999964 44 566677788999999999884
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=4.1e-25 Score=207.48 Aligned_cols=147 Identities=26% Similarity=0.300 Sum_probs=98.0
Q ss_pred ceeeeeeccccccccccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCC
Q 042944 37 VELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTS 116 (637)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 116 (637)
|.|......+++.++++- ...+.|+-|....+. ..+|+.+++||+|||++|.|+.+.+++|.++ ++
T Consensus 51 VdCr~~GL~eVP~~LP~~-----tveirLdqN~I~~iP------~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL---~~ 116 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPE-----TVEIRLDQNQISSIP------PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL---AS 116 (498)
T ss_pred EEccCCCcccCcccCCCc-----ceEEEeccCCcccCC------hhhccchhhhceecccccchhhcChHhhhhh---Hh
Confidence 344444555555555443 112455554433322 2467788888888888888888876555444 66
Q ss_pred ccEEECCC-CCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEE
Q 042944 117 LTLLDLSS-CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLH 194 (637)
Q Consensus 117 L~~L~L~~-n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~ 194 (637)
|.+|-+.+ |+|++.....|.++ ..|+.|.+.-|++. .++.++|..+++|..|.+.+|.+..+++ .|..+..++.+.
T Consensus 117 l~~Lvlyg~NkI~~l~k~~F~gL-~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 117 LLSLVLYGNNKITDLPKGAFGGL-SSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhHHHhhcCCchhhhhhhHhhhH-HHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 66665555 77775544444444 88888888888887 7777788888888888888888888766 677888888887
Q ss_pred cCCCc
Q 042944 195 LFDNN 199 (637)
Q Consensus 195 l~~n~ 199 (637)
+..|.
T Consensus 195 lA~np 199 (498)
T KOG4237|consen 195 LAQNP 199 (498)
T ss_pred hhcCc
Confidence 77775
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.9e-21 Score=204.96 Aligned_cols=142 Identities=23% Similarity=0.317 Sum_probs=78.7
Q ss_pred CCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCcc
Q 042944 435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN 514 (637)
Q Consensus 435 L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 514 (637)
|+.|++++|.+.+ .|..+.+|+.|++++|+++..+. . .++|+.|++++|.+. .+|.. ..+|+.|++++|+
T Consensus 324 L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~LP~-l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~ 393 (788)
T PRK15387 324 LCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLASLPT-L----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR 393 (788)
T ss_pred ccccccccCcccc-ccccccccceEecCCCccCCCCC-C----Ccccceehhhccccc-cCccc---ccccceEEecCCc
Confidence 3344444444432 22233455555555555553221 1 145555666666655 23432 2456667777776
Q ss_pred CCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944 515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN 594 (637)
Q Consensus 515 l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n 594 (637)
++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus 394 Lt---------~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 394 LT---------SLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cc---------CCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 66 33432 245667777777776 55542 235666777777776 56666777777777777777
Q ss_pred cccccccccc
Q 042944 595 SISGAIPKCI 604 (637)
Q Consensus 595 ~l~~~~p~~l 604 (637)
++++..|..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 7776655555
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.4e-20 Score=199.74 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=148.9
Q ss_pred CCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccc
Q 042944 384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSN 463 (637)
Q Consensus 384 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~ 463 (637)
++|+.|++++|.+.... . .+++|+.|++++|+++.... ..++|+.|++++|++.+. |..+.+|+.|++++
T Consensus 262 ~sL~~L~Ls~N~L~~Lp-~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~ 331 (788)
T PRK15387 262 PGLLELSIFSNPLTHLP-A----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PALPSELCKLWAYN 331 (788)
T ss_pred cccceeeccCCchhhhh-h----chhhcCEEECcCCccccccc----cccccceeECCCCccccC-CCCccccccccccc
Confidence 35556666666554321 1 22466677777777664322 235678888888877753 44567899999999
Q ss_pred ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcC
Q 042944 464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG 543 (637)
Q Consensus 464 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls 543 (637)
|++++.+ .. ..+|+.|++++|+++. +|.. .++|+.|++++|++. .+|.. ..+|+.|+++
T Consensus 332 N~L~~LP-~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~---------~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 332 NQLTSLP-TL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT---------SLPAL---PSGLKELIVS 390 (788)
T ss_pred Ccccccc-cc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc---------cCccc---ccccceEEec
Confidence 9998643 21 1689999999999984 5543 367899999999998 45543 2579999999
Q ss_pred CCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 544 DNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 544 ~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
+|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|+.+..+++|+.+++++|+|+.
T Consensus 391 ~N~Lt-~LP~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 391 GNRLT-SLPVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCccc-CCCCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 99998 67752 468999999999998 57754 357889999999998 789999999999999999999963
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.3e-18 Score=187.82 Aligned_cols=246 Identities=18% Similarity=0.241 Sum_probs=160.5
Q ss_pred CCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEe
Q 042944 312 KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDI 391 (637)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 391 (637)
+...|+++++.++.. |.. + .+.++.|++++|.++..... + ..+|+.|++.+|.+. .+|..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~-I--p~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTI-PAC-I--PEQITTLILDNNELKSLPEN-L--QGNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcC-Ccc-c--ccCCcEEEecCCCCCcCChh-h--ccCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 567888888887753 331 2 25788899998888744322 2 247888888888776 344433 246788888
Q ss_pred eCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCccc
Q 042944 392 SDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPIS 471 (637)
Q Consensus 392 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 471 (637)
++|.+.. .|..+ +.+|+.|++++|+++. +|..+ +++|+.|++++|++++.....+++|+.|++++|+++....
T Consensus 249 s~N~L~~-LP~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 249 SINRITE-LPERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred cCCccCc-CChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc
Confidence 8888774 34433 2578888888887774 33322 2467888888887776544445567777777777764332
Q ss_pred ccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccC
Q 042944 472 SLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI 551 (637)
Q Consensus 472 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 551 (637)
... ++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|.++ .+
T Consensus 322 ~l~----~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~---------~LP~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 322 TLP----PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT---------VLPETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred ccc----ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC---------cCChhh--cCCcCEEECCCCcCC-CC
Confidence 211 677777777777763 555443 67777777777776 444433 256777777777776 66
Q ss_pred ChhhhhcCCCCcEEeccCccccccCCccccC----CCCCcEeeCCCCccc
Q 042944 552 PAWIGDTLPKLAILSLRSNQFHGSIPRNLCR----LSKIQLLDFSLNSIS 597 (637)
Q Consensus 552 ~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~----l~~L~~L~ls~n~l~ 597 (637)
|..+. +.|+.|++++|++. .+|..+.. ++.+..|++.+|++.
T Consensus 383 P~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 76654 25777777777776 55544433 366777777777776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.2e-18 Score=188.23 Aligned_cols=247 Identities=21% Similarity=0.320 Sum_probs=171.8
Q ss_pred CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344 (637)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 344 (637)
+...|+++++.++..+..+ .++++.|++++|.++. +|..+. ++|+.|++++|.++.. +.. + .++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsL-P~~-l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSI-PAT-L--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccC-Chh-h--hccccEEECc
Confidence 3456667666665443322 3456666776666663 333322 3566666666665532 221 1 1244555555
Q ss_pred CCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCc
Q 042944 345 FNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424 (637)
Q Consensus 345 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 424 (637)
+| .+. .+|..+. .+|+.|++++|.+.. .|..+ +++|+.|++++|.++..
T Consensus 250 ~N------------------------~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l---~~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 250 IN------------------------RIT-ELPERLP--SALQSLDLFHNKISC-LPENL---PEELRYLSVYDNSIRTL 298 (754)
T ss_pred CC------------------------ccC-cCChhHh--CCCCEEECcCCccCc-ccccc---CCCCcEEECCCCccccC
Confidence 44 443 3344342 479999999999885 44433 36899999999999864
Q ss_pred ccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCC
Q 042944 425 VLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQA 504 (637)
Q Consensus 425 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 504 (637)
... + .++|+.|++++|.+.......+++|+.|++++|.++.....+. ++|+.|++++|.++ .+|..+. ++
T Consensus 299 P~~-l--p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~L~-~LP~~lp--~~ 368 (754)
T PRK15370 299 PAH-L--PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP----PELQVLDVSKNQIT-VLPETLP--PT 368 (754)
T ss_pred ccc-c--hhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc----CcccEEECCCCCCC-cCChhhc--CC
Confidence 332 2 2479999999999987655567899999999999986443322 79999999999998 5676553 78
Q ss_pred CcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh---cCCCCcEEeccCcccc
Q 042944 505 LAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD---TLPKLAILSLRSNQFH 573 (637)
Q Consensus 505 L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~---~l~~L~~L~L~~n~~~ 573 (637)
|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.. .++.+..|++.+|+++
T Consensus 369 L~~LdLs~N~Lt---------~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 369 ITTLDVSRNALT---------NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCEEECCCCcCC---------CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 999999999998 5666543 46999999999998 77765542 3588999999999987
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=9.7e-20 Score=151.83 Aligned_cols=159 Identities=25% Similarity=0.406 Sum_probs=145.5
Q ss_pred CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcccc
Q 042944 453 PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK 532 (637)
Q Consensus 453 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~ 532 (637)
..+++.|.+++|+++.+.|.+... .+|+.|++++|+++ .+|..++.+++|+.|+++-|++. .+|.+++
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l--~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAEL--KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHh--hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------cCccccC
Confidence 346788888888888888877766 89999999999998 78899999999999999999998 8999999
Q ss_pred CCCCCcEEEcCCCccc-ccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccce
Q 042944 533 KCNELKIIDAGDNKFS-GTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMV 611 (637)
Q Consensus 533 ~l~~L~~L~ls~n~l~-~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 611 (637)
.++.|+.||+++|.+. ..+|..+| .++.|+.|+|++|.+. .+|..++++++||.|.+.+|.+. .+|..++.+++|+
T Consensus 100 s~p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred CCchhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999999999999886 46888888 6999999999999998 89999999999999999999999 8899999999999
Q ss_pred eeccCCCeeEEEEEE
Q 042944 612 EKASSNSTITHIYVY 626 (637)
Q Consensus 612 ~l~l~~n~l~~~~~~ 626 (637)
+|+++||+++.+|..
T Consensus 177 elhiqgnrl~vlppe 191 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPE 191 (264)
T ss_pred HHhcccceeeecChh
Confidence 999999999988743
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.6e-19 Score=178.44 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=160.9
Q ss_pred EEEccCCcCCC-CChhhhcCCCCCCEEecCCCcCCCccc---hhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEe
Q 042944 291 RLDVSDSRLNG-TVSEGLGRLSKLEFLDLFGNSLEGMIT---ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIG 366 (637)
Q Consensus 291 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 366 (637)
.|+|.++.+.+ .....+..++.|+.++++++.+++... ...+...+.+++++++++.+... .
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~------------- 67 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P------------- 67 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c-------------
Confidence 45666666653 334445566678888888887754211 12345566677777776655410 0
Q ss_pred ccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcC--CCccEEECCCCcCCCccc----ccccCCCCCCeEeC
Q 042944 367 LLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS--PNLYYLNLSHNHLEGTVL----DLSLNYAGYPGIDL 440 (637)
Q Consensus 367 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l 440 (637)
......+..+..+++|+.|++++|.+.+..+..+.... ++|++|++++|++++... ..+..+
T Consensus 68 ----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~-------- 135 (319)
T cd00116 68 ----RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL-------- 135 (319)
T ss_pred ----hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC--------
Confidence 00012233445566666666666666554444433331 226666666666653111 112222
Q ss_pred CCCcCcCCCCCCCCCccEEEcccccccCccccc---ccccCCCccEEeCCCCCCccc----CchhhhccCCCcEEeccCc
Q 042944 441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSL---CSISGEYFSYLDVSDNLLSGE----LPDCLLRWQALAVLNLANN 513 (637)
Q Consensus 441 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n 513 (637)
.++|++|++++|.+++..... .....+.|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 136 ------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 136 ------------PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred ------------CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 123444444444443211100 011115677777777776632 2334555568888888888
Q ss_pred cCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc----CCCCcEEeccCccccc----cCCccccCCCC
Q 042944 514 NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT----LPKLAILSLRSNQFHG----SIPRNLCRLSK 585 (637)
Q Consensus 514 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~----l~~L~~L~L~~n~~~~----~~~~~l~~l~~ 585 (637)
.+.+.... .++..+..+++|++|++++|.+++.....+.+. .+.|++|++++|.++. .+...+..+++
T Consensus 204 ~i~~~~~~----~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 204 GLTDEGAS----ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred ccChHHHH----HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 77643222 233445667888888888888774333333332 3688888888888752 23445666688
Q ss_pred CcEeeCCCCccccc----cccccccc-ccceeeccCCCee
Q 042944 586 IQLLDFSLNSISGA----IPKCINNL-TAMVEKASSNSTI 620 (637)
Q Consensus 586 L~~L~ls~n~l~~~----~p~~l~~l-~~L~~l~l~~n~l 620 (637)
|+.+++++|.+... +...+... +.|+++++.+|++
T Consensus 280 L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 280 LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 88888888888744 33344444 6778888877753
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=3.3e-18 Score=172.23 Aligned_cols=71 Identities=30% Similarity=0.394 Sum_probs=34.2
Q ss_pred hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-----cCCcccC-CCccEEEccCCcCC
Q 042944 181 SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-----LPDITEF-SSLQELHLFDNKLD 253 (637)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~-~~L~~L~l~~n~i~ 253 (637)
+..+..+++|+.|++++|.+....+..+..+... ++|++|++++|.+... ...+..+ ++|++|++++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~--~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS--SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc--CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3445555666666666665554444555444411 1255555555554420 0112233 45555555555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=6.8e-18 Score=140.89 Aligned_cols=164 Identities=30% Similarity=0.470 Sum_probs=126.7
Q ss_pred cccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCC
Q 042944 109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMC 188 (637)
Q Consensus 109 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~ 188 (637)
.++..+.+++.|.+|+|+++. .|..+..+ .+|+.|++.+|++. ++|. .++.++.|+.|+++-|++..+|..|+.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l-~nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAEL-KNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHh-hhhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhhcCccccCCCc
Confidence 445556778888888888874 44447777 88888888888887 8887 77888888888888888888888888888
Q ss_pred CCcEEEcCCCcCC-CCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc
Q 042944 189 GLKTLHLFDNNLT-GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV 267 (637)
Q Consensus 189 ~L~~L~l~~n~i~-~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 267 (637)
.|++||+..|.+. ...|..|..+. .|+.|++++|.+...+++++.+++|+.|.+++|.+. ..|..++.++.|+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~-----tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred hhhhhhccccccccccCCcchhHHH-----HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 8888888877765 34677777777 788888888888877778888888888888888766 4677777777777
Q ss_pred EEEcCCCCCCCCCCC
Q 042944 268 ILNLDGNQLWGSLPD 282 (637)
Q Consensus 268 ~L~l~~~~~~~~~~~ 282 (637)
+|.+.+|+++..++.
T Consensus 177 elhiqgnrl~vlppe 191 (264)
T KOG0617|consen 177 ELHIQGNRLTVLPPE 191 (264)
T ss_pred HHhcccceeeecChh
Confidence 777777777655544
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.3e-13 Score=129.79 Aligned_cols=209 Identities=21% Similarity=0.162 Sum_probs=137.5
Q ss_pred cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhh-hHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944 85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAY-HWLFKISSNLLALDLNSNQLAGPIPDYAFSN 163 (637)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~ 163 (637)
+++++|+.+.|.++.+...... .....|++++.||||.|-+....+ ..+..-+|+|+.|+++.|.+........-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 5678899999999888766421 345667999999999998775443 2455556999999999998763333322346
Q ss_pred CCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCc--CCcccC
Q 042944 164 MTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL--PDITEF 239 (637)
Q Consensus 164 l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~ 239 (637)
+++|+.|.++.|.++. +...+..+|+|+.|++..|...........-+. .|+.|+|++|.+.+.. .....+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-----~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-----TLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-----HHhhccccCCcccccccccccccc
Confidence 7889999999998875 445567789999999988853323333344444 8888999988877544 446777
Q ss_pred CCccEEEccCCcCCCCCCCcC------CCCCCCcEEEcCCCCCC--CCCCCCCCCCCCCEEEccCCcCC
Q 042944 240 SSLQELHLFDNKLDGSFPEKF------RKPSPLVILNLDGNQLW--GSLPDLSVFPFLTRLDVSDSRLN 300 (637)
Q Consensus 240 ~~L~~L~l~~n~i~~~~~~~l------~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~ 300 (637)
+.|+.|+++.+.+........ ..+++|+.|++..|++. .....+..+++|+.|.+..|.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 788888888887764322222 33455666666666552 22223333445555554444443
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=1.5e-13 Score=125.53 Aligned_cols=236 Identities=20% Similarity=0.258 Sum_probs=156.1
Q ss_pred ccccCCCCccEEEeeCCC--CCC------ccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC
Q 042944 378 KWLQSQKNYYFLDISDTE--ISD------AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV 449 (637)
Q Consensus 378 ~~l~~~~~L~~L~l~~n~--i~~------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 449 (637)
..+..+..|++|.++... +.. ..+..+ ..+.+|.++.++.+.-.. +......-|.|.++.+....+.. .
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l-~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~ 252 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNL-NAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-V 252 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccch-HHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-c
Confidence 445567788888877542 111 111111 112566666666664332 22223344556666655444331 2
Q ss_pred CCCCCCccEEEcccccc---cCc-ccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccc
Q 042944 450 PPVPGNVTSLNLSNNKF---SGP-ISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVG 525 (637)
Q Consensus 450 ~~~~~~L~~L~L~~n~l---~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 525 (637)
+...|.-..-|.....- +|. ...+..+ ..|+.+|+|+|.++ .+.+.+.-.|+++.|++++|.|.
T Consensus 253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW--q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~--------- 320 (490)
T KOG1259|consen 253 PSLLPETILADPSGSEPSTSNGSALVSADTW--QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR--------- 320 (490)
T ss_pred ccccchhhhcCccCCCCCccCCceEEecchH--hhhhhccccccchh-hhhhhhhhccceeEEecccccee---------
Confidence 22222111222221110 110 1112222 78899999999998 66777888899999999999998
Q ss_pred cCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc-cccc
Q 042944 526 EIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI-PKCI 604 (637)
Q Consensus 526 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~l 604 (637)
.+. .++.+++|+.||+|+|.++ .+..+-. .+-+.++|+|+.|.+. .+ .++..+-+|..||+++|+|.+.- -..+
T Consensus 321 ~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~I 395 (490)
T KOG1259|consen 321 TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHI 395 (490)
T ss_pred eeh-hhhhcccceEeecccchhH-hhhhhHh-hhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhccc
Confidence 333 3788999999999999997 7776655 6999999999999997 33 57899999999999999998532 2478
Q ss_pred cccccceeeccCCCeeEEEEEEEeeeeecc
Q 042944 605 NNLTAMVEKASSNSTITHIYVYYRSATLDG 634 (637)
Q Consensus 605 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~ 634 (637)
+++|-|+++.+.||+|..+ +.||..++..
T Consensus 396 G~LPCLE~l~L~~NPl~~~-vdYRTKVLa~ 424 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPLAGS-VDYRTKVLAR 424 (490)
T ss_pred ccccHHHHHhhcCCCcccc-chHHHHHHHH
Confidence 9999999999999999988 5566655543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=6.9e-14 Score=138.54 Aligned_cols=152 Identities=30% Similarity=0.479 Sum_probs=111.4
Q ss_pred CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcccc
Q 042944 453 PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK 532 (637)
Q Consensus 453 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~ 532 (637)
+..|..+.+.+|.+......++.. ..|++|+++.|++. .+|..++.|| |+.|.+++|+++ .+|+.++
T Consensus 97 f~~Le~liLy~n~~r~ip~~i~~L--~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~---------~lp~~ig 163 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTIPEAICNL--EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT---------SLPEEIG 163 (722)
T ss_pred HHHHHHHHHHhccceecchhhhhh--hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc---------cCCcccc
Confidence 445666666666665554444444 66777777777776 6777777766 788888888877 7777777
Q ss_pred CCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccccee
Q 042944 533 KCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE 612 (637)
Q Consensus 533 ~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 612 (637)
.++.|..||.+.|.+. .+|..+. ++.+|+.|+++.|++. .+|..+..++ |..||+|+|++. .+|-+|..++.|++
T Consensus 164 ~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred cchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence 7777888888888886 7777777 5788888888888877 5666677544 777888888887 77888888888888
Q ss_pred eccCCCeeEE
Q 042944 613 KASSNSTITH 622 (637)
Q Consensus 613 l~l~~n~l~~ 622 (637)
|-|.+|+|++
T Consensus 239 l~LenNPLqS 248 (722)
T KOG0532|consen 239 LQLENNPLQS 248 (722)
T ss_pred eeeccCCCCC
Confidence 8888888764
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.4e-13 Score=128.93 Aligned_cols=87 Identities=21% Similarity=0.296 Sum_probs=53.0
Q ss_pred cCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC--cccccccCCCCCCeEeCCCCcCcCCCCC----CCC
Q 042944 381 QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG--TVLDLSLNYAGYPGIDLSSNDFEGPVPP----VPG 454 (637)
Q Consensus 381 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~ 454 (637)
.++.+|+.+.|.++.+...+.......+++++.||++.|-++. .+......+|+|+.|+++.|++...... .++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4567778888888777665554555666888888888876654 2334445667777777777665422211 144
Q ss_pred CccEEEccccccc
Q 042944 455 NVTSLNLSNNKFS 467 (637)
Q Consensus 455 ~L~~L~L~~n~l~ 467 (637)
+++.|.+++|.++
T Consensus 198 ~lK~L~l~~CGls 210 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS 210 (505)
T ss_pred hhheEEeccCCCC
Confidence 5555555555444
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=2.6e-12 Score=120.36 Aligned_cols=240 Identities=24% Similarity=0.300 Sum_probs=142.0
Q ss_pred cccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCC---CCCCCCc------hhccCCCCCCEEEcCCCc
Q 042944 109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQ---LAGPIPD------YAFSNMTALQHLNLSLNQ 176 (637)
Q Consensus 109 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~---l~~~l~~------~~~~~l~~L~~L~L~~n~ 176 (637)
+.+.....++.+++++|.+.......+.+.+ +.|+..+++.-- ....+|. .++..+++|++|+||+|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4455567788888888877755444444332 456666666431 1112332 145567788888888887
Q ss_pred ccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhh----c----ccCCCCcccEEEcCCCCCCCCcC-----Cccc
Q 042944 177 ISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLN----L----SGCSKNSLEILKLGGNKLTGSLP-----DITE 238 (637)
Q Consensus 177 l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~----l----~~~~~~~L~~L~l~~n~~~~~~~-----~~~~ 238 (637)
+.. +.+-+..+..|++|.+.+|.+.-.....+++ + ..-..++|+++..++|++..... .+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 665 3345677888888888888776332233221 1 11234577888888777764322 1455
Q ss_pred CCCccEEEccCCcCCCC----CCCcCCCCCCCcEEEcCCCCCCCCC-----CCCCCCCCCCEEEccCCcCCCCChhhh--
Q 042944 239 FSSLQELHLFDNKLDGS----FPEKFRKPSPLVILNLDGNQLWGSL-----PDLSVFPFLTRLDVSDSRLNGTVSEGL-- 307 (637)
Q Consensus 239 ~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~~l-- 307 (637)
.+.|+.+.+..|.|... ....|..+++|+.|++..|.++... ..+..+++|++|++++|.+......++
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 56777777777766422 2234566777777777777665321 223346677777777776665333222
Q ss_pred ---cCCCCCCEEecCCCcCCCccc---hhhhcCCCCCcEEEccCCcc
Q 042944 308 ---GRLSKLEFLDLFGNSLEGMIT---ESHVSNLSKLKYMDFSFNSL 348 (637)
Q Consensus 308 ---~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~ 348 (637)
...|+|+.+.+.+|.++.... .......+.|+.|++++|.+
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 245677777777777664321 12334456677777777766
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=2.2e-12 Score=120.90 Aligned_cols=251 Identities=22% Similarity=0.226 Sum_probs=133.2
Q ss_pred CCCcEEECCCCCCCCC----CCchhccCCCCCCEEEcCCCcc---cc-hh-------hhcCCCCCCcEEEcCCCcCCCCc
Q 042944 140 SNLLALDLNSNQLAGP----IPDYAFSNMTALQHLNLSLNQI---SA-IS-------KSFGNMCGLKTLHLFDNNLTGQL 204 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~l---~~-l~-------~~~~~l~~L~~L~l~~n~i~~~~ 204 (637)
..+++++|++|.+... +.. .+...++|+..++++--. .. +| +++.++++|++|+||+|-+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 5566677776665411 111 344555666666555311 11 22 23445555555566555554444
Q ss_pred hhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCC
Q 042944 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS 284 (637)
Q Consensus 205 ~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 284 (637)
++.|..+ +..+..|++|++.+|.+.......++. .|..+. .+ ....
T Consensus 109 ~~~l~~l------------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~------kk~~ 154 (382)
T KOG1909|consen 109 IRGLEEL------------------------LSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN------KKAA 154 (382)
T ss_pred hHHHHHH------------------------HHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH------hccC
Confidence 4444432 344667888888888765322222211 111111 11 1122
Q ss_pred CCCCCCEEEccCCcCCCC----ChhhhcCCCCCCEEecCCCcCCCccc---hhhhcCCCCCcEEEccCCcccccccCCCC
Q 042944 285 VFPFLTRLDVSDSRLNGT----VSEGLGRLSKLEFLDLFGNSLEGMIT---ESHVSNLSKLKYMDFSFNSLALNFSFGWL 357 (637)
Q Consensus 285 ~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 357 (637)
..+.|+++...+|++.+. ....+...+.|+.+.+..|.+..... ...+..+++|+.||+.+|-++.....
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--- 231 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--- 231 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---
Confidence 356678888887777653 33456667788888888887753322 23567778888888887777633221
Q ss_pred CCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhh----cCCCccEEECCCCcCCCcc----cccc
Q 042944 358 PPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWD----LSPNLYYLNLSHNHLEGTV----LDLS 429 (637)
Q Consensus 358 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~----~~~~L~~L~l~~n~i~~~~----~~~~ 429 (637)
.+...+...++|+.|++++|.+...+...+.. ..|+|+.+.+.+|.|+... ....
T Consensus 232 -----------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~ 294 (382)
T KOG1909|consen 232 -----------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM 294 (382)
T ss_pred -----------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence 22234455566666666666666655543332 2356677777777665321 1222
Q ss_pred cCCCCCCeEeCCCCcC
Q 042944 430 LNYAGYPGIDLSSNDF 445 (637)
Q Consensus 430 ~~~~~L~~L~l~~n~~ 445 (637)
...|.|..|++++|.+
T Consensus 295 ~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcchhhHHhcCCcccc
Confidence 2344555555555554
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=8.2e-12 Score=110.10 Aligned_cols=104 Identities=29% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCcEEEcCCCCCCCCCcccccccC-CCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944 89 SLRDLYLASSTLLSINRPSLSSMN-SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL 167 (637)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L 167 (637)
++++|+|+++.|+.+ +.++ .+.+|+.|++++|.|+... .+..+ ++|++|++++|.++ .++......+++|
T Consensus 20 ~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L-~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKLE--GLPGL-PRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-----cchhhhhcCCCEEECCCCCCcccc--CccCh-hhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 444555555544443 2232 2344455555555444322 13333 44455555555444 4432111234444
Q ss_pred CEEEcCCCcccchh--hhcCCCCCCcEEEcCCCcCC
Q 042944 168 QHLNLSLNQISAIS--KSFGNMCGLKTLHLFDNNLT 201 (637)
Q Consensus 168 ~~L~L~~n~l~~l~--~~~~~l~~L~~L~l~~n~i~ 201 (637)
++|++++|+|.++. ..+..+++|++|++.+|+++
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 45555444444421 23334444444444444443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=2.7e-11 Score=106.80 Aligned_cols=124 Identities=24% Similarity=0.323 Sum_probs=49.4
Q ss_pred CCccEEeCCCCCCcccCchhhh-ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944 479 EYFSYLDVSDNLLSGELPDCLL-RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 557 (637)
..+++|++++|.++. + +.+. .+.+|+.|++++|.|+ .+ +.+..++.|++|++++|.++ .++..+..
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~---------~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT---------KL-EGLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc---------cc-cCccChhhhhhcccCCCCCC-ccccchHH
Confidence 455667777777663 2 2344 4678888888888887 33 24667888888888888887 67655554
Q ss_pred cCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCccccc---ccccccccccceeecc
Q 042944 558 TLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGA---IPKCINNLTAMVEKAS 615 (637)
Q Consensus 558 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~---~p~~l~~l~~L~~l~l 615 (637)
.+|+|++|++++|+|... .-..+..+++|+.|++.+||++.. -...+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 588888888888888642 124566788888888888888743 1225567888888775
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1e-12 Score=130.44 Aligned_cols=170 Identities=25% Similarity=0.364 Sum_probs=90.6
Q ss_pred cEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccc
Q 042944 387 YFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKF 466 (637)
Q Consensus 387 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l 466 (637)
...|++.|++.. .|..++.+ ..|+.+.+..|.+. .++..+..+..|+.+|++.|++
T Consensus 78 ~~aDlsrNR~~e-lp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql--------------------- 133 (722)
T KOG0532|consen 78 VFADLSRNRFSE-LPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL--------------------- 133 (722)
T ss_pred hhhhcccccccc-CchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh---------------------
Confidence 355666666654 33333332 45566666666554 3444455555555555555554
Q ss_pred cCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCc
Q 042944 467 SGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK 546 (637)
Q Consensus 467 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 546 (637)
......+|. --|+.|.+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..+.++.+|+.|.++.|+
T Consensus 134 S~lp~~lC~---lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~---------slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 134 SHLPDGLCD---LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ---------SLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred hcCChhhhc---CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh---------hchHHhhhHHHHHHHHHhhhh
Confidence 433333333 23455555555555 45555555555555555555555 555555555555555555555
Q ss_pred ccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 547 FSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 547 l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
+. .+|..+. .-.|.+||+|.|+++ .+|-.|.+++.|++|-|.+|+++
T Consensus 201 l~-~lp~El~--~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 201 LE-DLPEELC--SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hh-hCCHHHh--CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 54 5555554 233455555555555 55555555555555555555555
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=1.4e-10 Score=120.11 Aligned_cols=195 Identities=34% Similarity=0.482 Sum_probs=128.7
Q ss_pred EEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC-CCCEEEcCCCcccchhhhcCCCCCCcEEEcCC
Q 042944 119 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT-ALQHLNLSLNQISAISKSFGNMCGLKTLHLFD 197 (637)
Q Consensus 119 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~ 197 (637)
.+++..+.+... ...+... +.++.|++.++.++ .++. ...... +|++|++++|.+..+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~-~~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLEL-TNLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcc-cceeEEecCCcccc-cCcc-ccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 577777766322 2224444 67788888888877 7776 444453 78888888888888777777788888888888
Q ss_pred CcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCC
Q 042944 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277 (637)
Q Consensus 198 n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 277 (637)
|++. ..+...+... .|+.|++++|.+...++.......|+++.+++|.+. ..+..+.++.++..+.+.+|++.
T Consensus 173 N~l~-~l~~~~~~~~-----~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 173 NDLS-DLPKLLSNLS-----NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred chhh-hhhhhhhhhh-----hhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 8776 4444444555 777888888877755554445556777777777433 34455666777777777777765
Q ss_pred CCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCc
Q 042944 278 GSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326 (637)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 326 (637)
.....+..++.++.|++++|.+..... +....+++.|+++++.+...
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 444444556667777777777764433 66667777777777766554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=1.1e-10 Score=120.87 Aligned_cols=200 Identities=31% Similarity=0.430 Sum_probs=161.1
Q ss_pred EEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcC-CCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944 92 DLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS-NLLALDLNSNQLAGPIPDYAFSNMTALQHL 170 (637)
Q Consensus 92 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 170 (637)
.++++.+.+.... ..+..++.++.|++.+|.++...+ ...... +|+.|++++|.+. .++. .+..+++|+.|
T Consensus 97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~~--~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCc----hhhhcccceeEEecCCcccccCcc--ccccchhhcccccccccchh-hhhh-hhhcccccccc
Confidence 5788888773332 445556889999999999986554 233324 8999999999998 8864 58899999999
Q ss_pred EcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCC
Q 042944 171 NLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN 250 (637)
Q Consensus 171 ~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 250 (637)
++++|++.++|......++|+.|++++|.+. ..|....... .|+++.+++|.+...+..+..+..+..+.+.+|
T Consensus 169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~-----~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-----ALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred ccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhh-----hhhhhhhcCCcceecchhhhhcccccccccCCc
Confidence 9999999999887779999999999999998 5565544454 799999999976657777888889999999999
Q ss_pred cCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhh
Q 042944 251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGL 307 (637)
Q Consensus 251 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 307 (637)
++.. .+..+..++.++.|++++|.+..... +....+++.|+++++.+....+...
T Consensus 243 ~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 243 KLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred eeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 8763 36778888999999999999986655 6679999999999999886655443
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.7e-10 Score=127.36 Aligned_cols=132 Identities=26% Similarity=0.329 Sum_probs=97.0
Q ss_pred cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC--CCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhcc
Q 042944 85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG--LSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS 162 (637)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~ 162 (637)
......+...+-++.+..+. .-..++.|++|-+..|. +. ..+..++..++.|++|||++|.-.+.+|. .++
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~-----~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~ 592 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIA-----GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIG 592 (889)
T ss_pred cchhheeEEEEeccchhhcc-----CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCCh-HHh
Confidence 34456788888777776652 23344678888888885 33 33444566568899999998754457888 788
Q ss_pred CCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC
Q 042944 163 NMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK 228 (637)
Q Consensus 163 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~ 228 (637)
.+.+||+|++++..++.+|..++++..|.+|++..+......+.....+. +|++|.+....
T Consensus 593 ~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-----~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-----SLRVLRLPRSA 653 (889)
T ss_pred hhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcc-----cccEEEeeccc
Confidence 88888999998888888888888888888888887765545566666677 88888876654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=3.7e-11 Score=110.11 Aligned_cols=127 Identities=25% Similarity=0.225 Sum_probs=55.9
Q ss_pred CccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCC
Q 042944 241 SLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320 (637)
Q Consensus 241 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 320 (637)
.|+++|+++|.|+ ...+...-.+.++.|+++.|.+. ....+..+++|++||+++|.++. ...+-..+.+++.|.+++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence 4444455554444 23333444444555555555444 22223344555555555554441 122222344455555555
Q ss_pred CcCCCccchhhhcCCCCCcEEEccCCcccccc-cCCCCCCCceeEEeccCCcCC
Q 042944 321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNF-SFGWLPPFQLESIGLLHCKLG 373 (637)
Q Consensus 321 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 373 (637)
|.+.+. ..++.+.+|..||+++|+|.... ...+++++-|+.+.+.+|.+.
T Consensus 362 N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 544432 13444445555555555543211 223444455555555555443
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=6.8e-11 Score=122.49 Aligned_cols=244 Identities=32% Similarity=0.356 Sum_probs=133.9
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT 165 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~ 165 (637)
.+..++.+++..+.+.... ..+..+++|+.|++.+|.|...... +..+ ++|++|++++|.|+ .+.. +..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~----~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~-~~L~~L~ls~N~I~-~i~~--l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL----NHLSKLKSLEALDLYDNKIEKIENL-LSSL-VNLQVLDLSFNKIT-KLEG--LSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhh----cccccccceeeeeccccchhhcccc-hhhh-hcchheeccccccc-cccc--hhhcc
Confidence 3455555556666666531 3355567777777777776643321 2223 77777777777776 6655 66666
Q ss_pred CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL 245 (637)
Q Consensus 166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 245 (637)
.|+.|++++|.|.++ ..+..+++|+.+++++|.+....+.....+. +++.+++.+|.+. .+..+..+..+..+
T Consensus 141 ~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~-----~l~~l~l~~n~i~-~i~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 141 LLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELI-----SLEELDLGGNSIR-EIEGLDLLKKLVLL 213 (414)
T ss_pred chhhheeccCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhcc-----chHHHhccCCchh-cccchHHHHHHHHh
Confidence 777777777777776 3455577777777777776633331034444 6777777777666 33334444444444
Q ss_pred EccCCcCCCCCCCcCCCCCC--CcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcC
Q 042944 246 HLFDNKLDGSFPEKFRKPSP--LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323 (637)
Q Consensus 246 ~l~~n~i~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 323 (637)
++..|.++... .+..+.. |+.+++++|.+......+..+..+..+++.++.+... ..+...+.+..+....+.+
T Consensus 214 ~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 214 SLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred hcccccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 66666655321 1222222 6666666666654334444466666666666665532 1233344444555555544
Q ss_pred CCc---cchhhhcCCCCCcEEEccCCccc
Q 042944 324 EGM---ITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 324 ~~~---~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
... .........+.++...+..+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cchhhhhccccccccccccccccccCccc
Confidence 311 11111334455555555555554
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=1.6e-09 Score=117.40 Aligned_cols=113 Identities=31% Similarity=0.536 Sum_probs=95.5
Q ss_pred CccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcC
Q 042944 480 YFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTL 559 (637)
Q Consensus 480 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l 559 (637)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. +.+|..+..+++|+.|++++|.+++.+|..+. .+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------CcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cC
Confidence 4788999999999889999999999999999999877 46777888899999999999999888888887 69
Q ss_pred CCCcEEeccCccccccCCccccCC-CCCcEeeCCCCccccccc
Q 042944 560 PKLAILSLRSNQFHGSIPRNLCRL-SKIQLLDFSLNSISGAIP 601 (637)
Q Consensus 560 ~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~ls~n~l~~~~p 601 (637)
++|+.|+|++|++++.+|..+... .++..+++++|+.....|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999999998888887664 467788898887665444
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=3.2e-09 Score=115.12 Aligned_cols=106 Identities=29% Similarity=0.534 Sum_probs=59.5
Q ss_pred CcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCC
Q 042944 505 LAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS 584 (637)
Q Consensus 505 L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 584 (637)
++.|+|++|.+. +.+|..+..+++|+.|++++|.+++.+|..+. .+++|+.|+|++|++++.+|..+..++
T Consensus 420 v~~L~L~~n~L~--------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLR--------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCcc--------ccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 455555555554 24455555556666666666666555555554 456666666666666555555556666
Q ss_pred CCcEeeCCCCccccccccccccc-ccceeeccCCCe
Q 042944 585 KIQLLDFSLNSISGAIPKCINNL-TAMVEKASSNST 619 (637)
Q Consensus 585 ~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~l~~n~ 619 (637)
+|+.|++++|.+.+.+|..+... .++..+++++|.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 66666666666665555555432 344455555553
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=3.9e-10 Score=116.84 Aligned_cols=222 Identities=27% Similarity=0.345 Sum_probs=169.0
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN 163 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~ 163 (637)
+..+++++.|++.+|.+..+. ..+..+++|++|++++|.|++..+ +..+ +.|+.|++++|.+. .+.. +..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~----~~l~~~~~L~~L~ls~N~I~~i~~--l~~l-~~L~~L~l~~N~i~-~~~~--~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE----NLLSSLVNLQVLDLSFNKITKLEG--LSTL-TLLKELNLSGNLIS-DISG--LES 160 (414)
T ss_pred cccccceeeeeccccchhhcc----cchhhhhcchheeccccccccccc--hhhc-cchhhheeccCcch-hccC--Ccc
Confidence 678899999999999999883 227778999999999999986654 5555 77999999999998 8876 777
Q ss_pred CCCCCEEEcCCCcccchhhh-cCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCC-
Q 042944 164 MTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSS- 241 (637)
Q Consensus 164 l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~- 241 (637)
++.|+.+++++|++..+... ...+.+++.+.+.+|.+. ....+..+. .+..+++..|.+. ....+.....
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~-----~l~~~~l~~n~i~-~~~~l~~~~~~ 232 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR--EIEGLDLLK-----KLVLLSLLDNKIS-KLEGLNELVML 232 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh--cccchHHHH-----HHHHhhcccccce-eccCcccchhH
Confidence 99999999999999998553 588999999999999985 344444444 6666788888887 3333444444
Q ss_pred -ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC---Chh-hhcCCCCCCEE
Q 042944 242 -LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGT---VSE-GLGRLSKLEFL 316 (637)
Q Consensus 242 -L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~-~l~~l~~L~~L 316 (637)
|+.+++.+|.+.. .+..+..+..+..+++..+++. ........+.+..+....+.+... ... .....+.++.+
T Consensus 233 ~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 233 HLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS-NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHHhcccCcccc-ccccccccccccccchhhcccc-ccccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 8999999999873 3366778889999999999886 333444566677777777765521 111 14456778888
Q ss_pred ecCCCcCCC
Q 042944 317 DLFGNSLEG 325 (637)
Q Consensus 317 ~l~~n~~~~ 325 (637)
.+..+....
T Consensus 311 ~~~~~~~~~ 319 (414)
T KOG0531|consen 311 TLELNPIRK 319 (414)
T ss_pred ccccCcccc
Confidence 888887654
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.88 E-value=4.9e-11 Score=121.77 Aligned_cols=176 Identities=22% Similarity=0.253 Sum_probs=125.1
Q ss_pred cccCCCCCCeEeCCCCcCcCCCCCC--CCCccEEEccccccc----------CcccccccccCCCccEEeCCCCCCcccC
Q 042944 428 LSLNYAGYPGIDLSSNDFEGPVPPV--PGNVTSLNLSNNKFS----------GPISSLCSISGEYFSYLDVSDNLLSGEL 495 (637)
Q Consensus 428 ~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 495 (637)
.+..+.+|+.|.+.+|.+....... -..|++|... |.+. +.+.....+ -.|...+.++|.+. .+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~W--n~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVW--NKLATASFSYNRLV-LM 179 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhh--hhHhhhhcchhhHH-hH
Confidence 3455667777777777665422211 1234444222 2211 111112222 57788899999998 67
Q ss_pred chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944 496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575 (637)
Q Consensus 496 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~ 575 (637)
..++.-++.|+.|+|++|++++ . ..+..|+.|++|||++|.+. .+|..-...+ +|..|+|++|.++ .
T Consensus 180 D~SLqll~ale~LnLshNk~~~---------v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-t 246 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTK---------V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-T 246 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhh---------h-HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-h
Confidence 7889999999999999999883 2 26788999999999999997 7775433233 4999999999998 4
Q ss_pred CCccccCCCCCcEeeCCCCcccccc-cccccccccceeeccCCCeeE
Q 042944 576 IPRNLCRLSKIQLLDFSLNSISGAI-PKCINNLTAMVEKASSNSTIT 621 (637)
Q Consensus 576 ~~~~l~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~l~l~~n~l~ 621 (637)
+ .++.++.+|+.||+++|-+.+-- -+.+..+.+|+.|+|.||++-
T Consensus 247 L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4 47899999999999999776421 124678899999999999984
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.8e-09 Score=78.18 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=37.0
Q ss_pred CCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944 560 PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 560 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
|+|++|++++|+++...+..|..+++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666643445556666666666666666655555666666666666666654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=3e-09 Score=76.96 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=43.1
Q ss_pred CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcc
Q 042944 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSI 596 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l 596 (637)
|+|++|++++|+++ .+|...++.+++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777776 66666665677777777777777765666777777777777777764
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=1e-08 Score=113.55 Aligned_cols=103 Identities=33% Similarity=0.406 Sum_probs=52.0
Q ss_pred CCCcEEECCCCC--CCCCCCchhccCCCCCCEEEcCCC-cccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCC
Q 042944 140 SNLLALDLNSNQ--LAGPIPDYAFSNMTALQHLNLSLN-QISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK 216 (637)
Q Consensus 140 ~~L~~L~L~~n~--l~~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~ 216 (637)
+.|++|-+.+|. +. .++...|..++.|++||+++| .+..+|..++.+-+||+|+++++.+. .+|..+.++.
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk---- 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK---- 618 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH----
Confidence 345555555553 33 444434555555555555544 33445555555555555555555554 5555555555
Q ss_pred CcccEEEcCCCCCCCCcCCc-ccCCCccEEEccC
Q 042944 217 NSLEILKLGGNKLTGSLPDI-TEFSSLQELHLFD 249 (637)
Q Consensus 217 ~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~ 249 (637)
+|.+|++..+.....++.+ ..+++|++|.+..
T Consensus 619 -~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 619 -KLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred -hhheeccccccccccccchhhhcccccEEEeec
Confidence 5555555554433333322 2255555555544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.4e-10 Score=102.09 Aligned_cols=85 Identities=27% Similarity=0.308 Sum_probs=50.6
Q ss_pred CccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCC-cccc--hhhhcCCCCCCcE
Q 042944 116 SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLN-QISA--ISKSFGNMCGLKT 192 (637)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n-~l~~--l~~~~~~l~~L~~ 192 (637)
.|++|||+...|+......+..-|.+|+.|.+.++.+.+.+-. .+++-.+|+.|+++.+ .++. +.-.+..|+.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666666666666544444444446666666666666644444 5566666666666664 3443 2234566666666
Q ss_pred EEcCCCcCC
Q 042944 193 LHLFDNNLT 201 (637)
Q Consensus 193 L~l~~n~i~ 201 (637)
|++++|...
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 666666554
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=1.6e-09 Score=104.32 Aligned_cols=304 Identities=20% Similarity=0.120 Sum_probs=159.6
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchhccCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYAFSNMT 165 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~~~~l~ 165 (637)
..|+.|++.++.-....+ .-.....++++++|++.++ ++++.....+.+.+++|++|++..|. ++...-.+....++
T Consensus 138 g~lk~LSlrG~r~v~~ss-lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSS-LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcch-hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 468888888875544422 0123356788888888888 46666666788888889999988853 44111122335788
Q ss_pred CCCEEEcCCCc-ccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC---CcccC
Q 042944 166 ALQHLNLSLNQ-ISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP---DITEF 239 (637)
Q Consensus 166 ~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~---~~~~~ 239 (637)
+|++|++++|. |+. +...+.++..++.+...+|.- ...+.+.... ...+.+..+++..|....... .-..+
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~-~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAA-AYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHh-ccChHhhccchhhhccccchHHHHHhhhh
Confidence 88888888873 333 445567777788887777642 2233333322 233356666665553221111 12345
Q ss_pred CCccEEEccCCcC-CCCCCCc-CCCCCCCcEEEcCCCCCCC-CCCC--CCCCCCCCEEEccCCcCCC--CChhhhcCCCC
Q 042944 240 SSLQELHLFDNKL-DGSFPEK-FRKPSPLVILNLDGNQLWG-SLPD--LSVFPFLTRLDVSDSRLNG--TVSEGLGRLSK 312 (637)
Q Consensus 240 ~~L~~L~l~~n~i-~~~~~~~-l~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~ 312 (637)
..|+.|..+++.- ++..... -.+..+|+.+.+++|+.-. .-.. ...+++|+.+++.++.... .+...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 5677777766542 2211111 2345667777776665311 1111 1125666666666654321 12222335556
Q ss_pred CCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCC-CccccccCCCCccEEEe
Q 042944 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGP-HFPKWLQSQKNYYFLDI 391 (637)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l 391 (637)
|+.+.+++|..........+ .........++.+.+++|..+. ...+.+..+++|+.+++
T Consensus 374 lr~lslshce~itD~gi~~l--------------------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHL--------------------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred hccCChhhhhhhhhhhhhhh--------------------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 66666665543221100001 0111223345555555554322 23344566677777777
Q ss_pred eCCC-CCCccchhhhhcCCCccEEE
Q 042944 392 SDTE-ISDAVPSWFWDLSPNLYYLN 415 (637)
Q Consensus 392 ~~n~-i~~~~~~~~~~~~~~L~~L~ 415 (637)
-+++ ++......+...+|+++..-
T Consensus 434 ~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 434 IDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred echhhhhhhhhHHHHhhCccceehh
Confidence 6664 34444445555555555443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.7e-09 Score=98.10 Aligned_cols=226 Identities=21% Similarity=0.170 Sum_probs=107.2
Q ss_pred CccEEECCCCCCCchhhhHHHhhc-CCCcEEECCCCCCCCC-CCchhccCC-CCCCEEEcCCCcccc--hhhhcCCCCCC
Q 042944 116 SLTLLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSNQLAGP-IPDYAFSNM-TALQHLNLSLNQISA--ISKSFGNMCGL 190 (637)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~~-~~L~~L~L~~n~l~~~-l~~~~~~~l-~~L~~L~L~~n~l~~--l~~~~~~l~~L 190 (637)
..+.+|+.+-.|.... +.++. ....++.+....+... +.+ .+... ..|++|||+...|+. +-..+..|.+|
T Consensus 137 lW~~lDl~~r~i~p~~---l~~l~~rgV~v~Rlar~~~~~prlae-~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 137 LWQTLDLTGRNIHPDV---LGRLLSRGVIVFRLARSFMDQPRLAE-HFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL 212 (419)
T ss_pred ceeeeccCCCccChhH---HHHHHhCCeEEEEcchhhhcCchhhh-hhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence 4556666665554222 22221 3455666654433211 111 11111 246777777666655 44455666677
Q ss_pred cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCCcC--CcccCCCccEEEccCCcCCCCCCCcCCCCCCCc
Q 042944 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV 267 (637)
Q Consensus 191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 267 (637)
+.|.+.++++.+.....+++-. +|+.|+++.+. ++.... -+..++.|.+|++++|.........
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~-----~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-------- 279 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNS-----NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-------- 279 (419)
T ss_pred hhccccccccCcHHHHHHhccc-----cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--------
Confidence 7777777776666666666655 66666666543 221000 1334445555555555433111100
Q ss_pred EEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcCC---CCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEc
Q 042944 268 ILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRLN---GTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDF 343 (637)
Q Consensus 268 ~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 343 (637)
.+.+ -++|+.|+++|+.-. ..+......+|+|..||+++|..........+..++.|++|.+
T Consensus 280 --------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 280 --------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred --------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 0111 344555555554211 1122223455666666666654322222234455566666666
Q ss_pred cCCccc-ccccCCCCCCCceeEEeccCCcC
Q 042944 344 SFNSLA-LNFSFGWLPPFQLESIGLLHCKL 372 (637)
Q Consensus 344 ~~n~~~-~~~~~~~~~~~~L~~L~l~~~~~ 372 (637)
+.|... -.....+...++|.+|++.+|--
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 665432 12222344556667777666643
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.53 E-value=2.8e-08 Score=90.33 Aligned_cols=239 Identities=17% Similarity=0.173 Sum_probs=152.8
Q ss_pred cCCCCccEEEeeCCCCCCccchhhhhcC---CCccEEECCCCcCCC-----------cccccccCCCCCCeEeCCCCcCc
Q 042944 381 QSQKNYYFLDISDTEISDAVPSWFWDLS---PNLYYLNLSHNHLEG-----------TVLDLSLNYAGYPGIDLSSNDFE 446 (637)
Q Consensus 381 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~---~~L~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~~~ 446 (637)
..+..++.+++|+|.|......+++... .+|+..+++.- +++ .....+..||.|+.+++|.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3466777777777777776666665543 34555555542 121 22244557888888888888877
Q ss_pred CCCCCC-------CCCccEEEcccccccCcccccc------------cccCCCccEEeCCCCCCcccC----chhhhccC
Q 042944 447 GPVPPV-------PGNVTSLNLSNNKFSGPISSLC------------SISGEYFSYLDVSDNLLSGEL----PDCLLRWQ 503 (637)
Q Consensus 447 ~~~~~~-------~~~L~~L~L~~n~l~~~~~~~~------------~~~~~~L~~L~l~~n~l~~~~----~~~l~~l~ 503 (637)
...|.. -..|..|.+++|.+....-.-. ....|.|+..+...|++..-. ...+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 555543 3567888888887643211110 112288999999999886321 12344446
Q ss_pred CCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhh---hcCCCCcEEeccCccccccCCcc-
Q 042944 504 ALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG---DTLPKLAILSLRSNQFHGSIPRN- 579 (637)
Q Consensus 504 ~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~---~~l~~L~~L~L~~n~~~~~~~~~- 579 (637)
.|+.+.+..|.|...... ..+-..+.++++|+.||+..|-++-.....+. ...+.|++|.+..|-++..-...
T Consensus 186 ~lk~vki~qNgIrpegv~---~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVT---MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred CceeEEeeecCcCcchhH---HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 899999999988733211 12223467889999999999988733332222 13566899999999887442211
Q ss_pred ---c--cCCCCCcEeeCCCCccccccccc------c-cccccceeeccCCCeeEEE
Q 042944 580 ---L--CRLSKIQLLDFSLNSISGAIPKC------I-NNLTAMVEKASSNSTITHI 623 (637)
Q Consensus 580 ---l--~~l~~L~~L~ls~n~l~~~~p~~------l-~~l~~L~~l~l~~n~l~~~ 623 (637)
| ...++|+.|-..+|.+.+-+... . ..+|-|..+-++||+|...
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 1 12588899999999776533222 1 3688899999999999644
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.6e-08 Score=90.76 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=116.5
Q ss_pred CCccEEEeeCCCCCCccch-hhhhcCCCccEEECCCCcCCC--cccccccCCCCCCeEeCCCCcCcCCCCC---CCCCcc
Q 042944 384 KNYYFLDISDTEISDAVPS-WFWDLSPNLYYLNLSHNHLEG--TVLDLSLNYAGYPGIDLSSNDFEGPVPP---VPGNVT 457 (637)
Q Consensus 384 ~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~ 457 (637)
..++.+.+.++.|...+.. .+....+.++++|+.+|.|++ .+...+.++|.|+.|+++.|++...+.. ...+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3444555555555544332 233334566666666666654 2333445666666666666665433322 234666
Q ss_pred EEEcccccccCcccccccccCCCccEEeCCCCCCcc--cCchhhhcc-CCCcEEeccCccCCCCccccccccCCccccCC
Q 042944 458 SLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSG--ELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPPSLKKC 534 (637)
Q Consensus 458 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l 534 (637)
.|-|.+..+............|.++.|.+|.|.+.. ...++.... +.++.|+...|...- -..+..-...+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~------w~~~~~l~r~F 198 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL------WLNKNKLSRIF 198 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH------HHHHHhHHhhc
Confidence 666666554332222222222556666666663221 111222222 244444444443210 00011111235
Q ss_pred CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCcccccccc------ccccc
Q 042944 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGAIPK------CINNL 607 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p~------~l~~l 607 (637)
+++..+.+..|.+++.-...-++.+|.+..|+|+.|+|..- ..+.+..+++|..|.++++++.+.+-. -++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 67777888888776444444445677788888888887621 124566778888888888887654322 24566
Q ss_pred ccceeec
Q 042944 608 TAMVEKA 614 (637)
Q Consensus 608 ~~L~~l~ 614 (637)
+.++.|+
T Consensus 279 ~~v~vLN 285 (418)
T KOG2982|consen 279 TKVQVLN 285 (418)
T ss_pred cceEEec
Confidence 6666654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2.7e-08 Score=91.54 Aligned_cols=208 Identities=23% Similarity=0.246 Sum_probs=113.2
Q ss_pred ccEEECCCCCCCchhh-hHHHhhcCCCcEEECCCCCCCC--CCCchhccCCCCCCEEEcCCCcccchhhhc-CCCCCCcE
Q 042944 117 LTLLDLSSCGLSNSAY-HWLFKISSNLLALDLNSNQLAG--PIPDYAFSNMTALQHLNLSLNQISAISKSF-GNMCGLKT 192 (637)
Q Consensus 117 L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~--~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~l~~L~~ 192 (637)
+..|-+.++.|..... ..+...++.++.|||.+|.|++ ++.. .+.++|+|+.|+++.|.+...-..+ ....+|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4445555555554332 2344444667777777776651 1222 3456677777777776665522222 24556666
Q ss_pred EEcCCCcCCCCch-hHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEc
Q 042944 193 LHLFDNNLTGQLP-ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271 (637)
Q Consensus 193 L~l~~n~i~~~~~-~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 271 (637)
|-+.+..+..... ..+..++ +++.|+++.|.+. .+.+.++.+... -+.+.++..
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP-----~vtelHmS~N~~r-------------q~n~Dd~c~e~~-------s~~v~tlh~ 180 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLP-----KVTELHMSDNSLR-------------QLNLDDNCIEDW-------STEVLTLHQ 180 (418)
T ss_pred EEEcCCCCChhhhhhhhhcch-----hhhhhhhccchhh-------------hhcccccccccc-------chhhhhhhc
Confidence 6666665543222 2223333 5555555554322 112222222211 123344444
Q ss_pred CCCCCCC--CCCCCCC-CCCCCEEEccCCcCCCC-ChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc
Q 042944 272 DGNQLWG--SLPDLSV-FPFLTRLDVSDSRLNGT-VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS 347 (637)
Q Consensus 272 ~~~~~~~--~~~~~~~-~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 347 (637)
..|.... ..-.+.. +|++..+-+..|++.+. ....+..+|.+.-|+++.+.+.+....+.+.++++|..|.++.++
T Consensus 181 ~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 181 LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 4443211 1111222 67788888888877652 233455677788888888888877777778888888888888888
Q ss_pred ccc
Q 042944 348 LAL 350 (637)
Q Consensus 348 ~~~ 350 (637)
+.+
T Consensus 261 l~d 263 (418)
T KOG2982|consen 261 LSD 263 (418)
T ss_pred ccc
Confidence 764
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=6.1e-08 Score=88.15 Aligned_cols=217 Identities=19% Similarity=0.192 Sum_probs=122.2
Q ss_pred ccccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCCCC---CCCCc------hhccCCCCCCEEEcCCC
Q 042944 108 LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQLA---GPIPD------YAFSNMTALQHLNLSLN 175 (637)
Q Consensus 108 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~l~---~~l~~------~~~~~l~~L~~L~L~~n 175 (637)
+..+..+..++.++||+|.|.......+.+.. .+|+..+++.-... ..++. .++.+||+|+..+||+|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 45555667888888888888766665555443 45666666643211 11111 14667888888888888
Q ss_pred cccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhh----hc----ccCCCCcccEEEcCCCCCCCCcCC-----cc
Q 042944 176 QISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFL----NL----SGCSKNSLEILKLGGNKLTGSLPD-----IT 237 (637)
Q Consensus 176 ~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----~l----~~~~~~~L~~L~l~~n~~~~~~~~-----~~ 237 (637)
.+.. +.+.+.+.+.|++|.+++|.+......-++ .+ +....|.|++.....|++...... +.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 7765 334567788888888888876532222222 11 113345788888888877643332 22
Q ss_pred cCCCccEEEccCCcCCCCCC-----CcCCCCCCCcEEEcCCCCCCCCCC-----CCCCCCCCCEEEccCCcCCCCChhhh
Q 042944 238 EFSSLQELHLFDNKLDGSFP-----EKFRKPSPLVILNLDGNQLWGSLP-----DLSVFPFLTRLDVSDSRLNGTVSEGL 307 (637)
Q Consensus 238 ~~~~L~~L~l~~n~i~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~~~~~l 307 (637)
....|+.+.+..|.|..... ..+..+.+|+.|++..|.++.... .+..++.|++|.+..|-+.......+
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 23467777777777652211 122344666777777666643221 12225556666666665543222111
Q ss_pred ----c--CCCCCCEEecCCCcCC
Q 042944 308 ----G--RLSKLEFLDLFGNSLE 324 (637)
Q Consensus 308 ----~--~l~~L~~L~l~~n~~~ 324 (637)
. ..|+|..|...+|...
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhhhhcCCCccccccchhhhc
Confidence 1 2455566655555443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.9e-09 Score=108.27 Aligned_cols=126 Identities=32% Similarity=0.271 Sum_probs=65.4
Q ss_pred CcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEE
Q 042944 190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVIL 269 (637)
Q Consensus 190 L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 269 (637)
|...+.+.|.+. .+...+.-++ .++.|+|++|+++. ...+..++.|++|||++|.+..........+. |+.|
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~-----ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLP-----ALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHH-----Hhhhhccchhhhhh-hHHHHhcccccccccccchhccccccchhhhh-heee
Confidence 445555555554 4455555555 66666666666663 33556666666666666665533222222322 6666
Q ss_pred EcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC-ChhhhcCCCCCCEEecCCCcCC
Q 042944 270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGT-VSEGLGRLSKLEFLDLFGNSLE 324 (637)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~ 324 (637)
.+++|.++ ..-++.++.+|+.||++.|-+.+. .-.-++.+..|+.|.+.+|.+.
T Consensus 238 ~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66666554 333344455566666666655431 1111334445556666666553
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=5.7e-08 Score=93.82 Aligned_cols=259 Identities=20% Similarity=0.160 Sum_probs=162.4
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccC-CCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchh
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMN-SSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYA 160 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~ 160 (637)
..++|++++|++.++.... ...+..++ .|+.|++|++..| .+++.....+.+.+++|++|+++.|. +.+.--...
T Consensus 160 ~~~CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred hhhCCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 4678999999999986332 22233343 4899999999996 57777777788888999999999985 332111124
Q ss_pred ccCCCCCCEEEcCCCcccc---hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCC
Q 042944 161 FSNMTALQHLNLSLNQISA---ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPD 235 (637)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~---l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~ 235 (637)
+.+++.++.+.+.+|.-.. +-..-+.+.-+..+++..|.... ...+... .+.+.+|+.+..+++.-.. .+..
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT--D~~~~~i-~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT--DEDLWLI-ACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc--chHHHHH-hhhhhHhhhhcccCCCCCchHHHHH
Confidence 5677888888888763322 32333456667777776664321 1111111 1233388999888775421 1112
Q ss_pred -cccCCCccEEEccCCc-CCCCCCCcC-CCCCCCcEEEcCCCCCCCC--CCC-CCCCCCCCEEEccCCcCC-CCC----h
Q 042944 236 -ITEFSSLQELHLFDNK-LDGSFPEKF-RKPSPLVILNLDGNQLWGS--LPD-LSVFPFLTRLDVSDSRLN-GTV----S 304 (637)
Q Consensus 236 -~~~~~~L~~L~l~~n~-i~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~n~~~-~~~----~ 304 (637)
..+.++|+.+-+..|+ +++.....+ .+++.|+.+++.++..... ... ...++.|+.+.+++|... +.. .
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 2345689999998886 444333333 3568899999888765321 122 233888999999988543 221 1
Q ss_pred hhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc
Q 042944 305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS 347 (637)
Q Consensus 305 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 347 (637)
..-..+..++.+.+++++.........+..+++|+.+++-++.
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 2223455677888888876655555566666777776665543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=2.2e-08 Score=81.33 Aligned_cols=106 Identities=26% Similarity=0.445 Sum_probs=77.4
Q ss_pred CCccEEeCCCCCCcccCch---hhhccCCCcEEeccCccCCCCccccccccCCcccc-CCCCCcEEEcCCCcccccCChh
Q 042944 479 EYFSYLDVSDNLLSGELPD---CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK-KCNELKIIDAGDNKFSGTIPAW 554 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~-~l~~L~~L~ls~n~l~~~~~~~ 554 (637)
..+..++++.|++. -+++ .+.....|+..+|++|.+. ..|+.+. ..+.++.|++++|.++ .+|..
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk---------~fp~kft~kf~t~t~lNl~~neis-dvPeE 95 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK---------KFPKKFTIKFPTATTLNLANNEIS-DVPEE 95 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh---------hCCHHHhhccchhhhhhcchhhhh-hchHH
Confidence 45667888888776 2333 3445566777788888887 4454433 3457788888888887 78887
Q ss_pred hhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 555 IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 555 l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
+. .+|.|+.|+++.|++. ..|..+..+.++-.||.-+|.+.
T Consensus 96 ~A-am~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 96 LA-AMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred Hh-hhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 66 6888888888888887 66777777888888888888776
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=2e-07 Score=75.83 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=52.3
Q ss_pred CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944 89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ 168 (637)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 168 (637)
.+..++|+.|.+-.+ +++...+....+|+..+|++|.+.+..+. +...++.++.|++++|.+. ++|. .++.++.|+
T Consensus 28 E~h~ldLssc~lm~i-~davy~l~~~~el~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~neis-dvPe-E~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYI-ADAVYMLSKGYELTKISLSDNGFKKFPKK-FTIKFPTATTLNLANNEIS-DVPE-ELAAMPALR 103 (177)
T ss_pred HhhhcccccchhhHH-HHHHHHHhCCceEEEEecccchhhhCCHH-Hhhccchhhhhhcchhhhh-hchH-HHhhhHHhh
Confidence 344455555544433 12233344445555555555555433222 3322245555555555555 5555 355555555
Q ss_pred EEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944 169 HLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201 (637)
Q Consensus 169 ~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~ 201 (637)
.|+++.|.+...|..+..+.++-.|+..+|.+.
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 555555555555554444555555555555443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.09 E-value=8.3e-06 Score=81.24 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCC-CCCCccEEEcccc
Q 042944 409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPP-VPGNVTSLNLSNN 464 (637)
Q Consensus 409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~L~~n 464 (637)
+.+++|++++|.++.. | .-.++|+.|.+++|.-....|. .+.+|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence 5677777777766533 2 1223566666666544333332 2345666666655
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=4.2e-06 Score=90.70 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=72.9
Q ss_pred CCccEEECCCCCCC-chhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEE
Q 042944 115 TSLTLLDLSSCGLS-NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTL 193 (637)
Q Consensus 115 ~~L~~L~L~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 193 (637)
.+|++|++++.... ..-+..++..+|+|+.|.+++-.+...--.....++|+|+.||+|+++++.+ .+++.+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666666665432 2233445555666666666665443111111345666666666666666666 556666666666
Q ss_pred EcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCc-------CCcccCCCccEEEccCCcCCC
Q 042944 194 HLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSL-------PDITEFSSLQELHLFDNKLDG 254 (637)
Q Consensus 194 ~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~-------~~~~~~~~L~~L~l~~n~i~~ 254 (637)
.+.+=.+.. ..-..+.+++ +|++||+|........ .--..+|+|+.||.+++.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~-----~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLK-----KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhccc-----CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 666555442 1223444555 6666666655443221 112336677777777766553
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.03 E-value=1.1e-05 Score=70.69 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=40.4
Q ss_pred CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCCCcc
Q 042944 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQ 243 (637)
Q Consensus 166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~L~ 243 (637)
+...+++++|.+..+ ..|.++++|++|.+++|+|+...|.--..++ +|+.|.+.+|.+.. .+..+..+|.|+
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p-----~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLP-----NLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhcc-----ccceEEecCcchhhhhhcchhccCCccc
Confidence 344455555555444 2344555555555555555543333333333 45555555555543 222345555666
Q ss_pred EEEccCCcCC
Q 042944 244 ELHLFDNKLD 253 (637)
Q Consensus 244 ~L~l~~n~i~ 253 (637)
+|.+-+|.++
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 6666555554
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6e-06 Score=54.42 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=16.3
Q ss_pred CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201 (637)
Q Consensus 166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~ 201 (637)
+|++|++++|+|+++|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444444444444444444444444443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=9.2e-06 Score=53.53 Aligned_cols=41 Identities=49% Similarity=0.656 Sum_probs=33.4
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK 182 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~ 182 (637)
++|++|++++|.++ .++. .++++++|++|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence 57899999999998 8887 68999999999999999988743
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1.2e-05 Score=70.54 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=74.6
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCc-hhccCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPD-YAFSNMTA 166 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~-~~~~~l~~ 166 (637)
.....+||++|.+... ..|..++.|.+|.+.+|+|+.+.+. +...+++|+.|.|.+|.+. .+.+ .-+..+|.
T Consensus 42 d~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK 114 (233)
T ss_pred cccceecccccchhhc-----ccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchh-hhhhcchhccCCc
Confidence 4667788888887766 4566678888888888888866665 6666688888888888776 4332 12567788
Q ss_pred CCEEEcCCCcccchhh----hcCCCCCCcEEEcCCC
Q 042944 167 LQHLNLSLNQISAISK----SFGNMCGLKTLHLFDN 198 (637)
Q Consensus 167 L~~L~L~~n~l~~l~~----~~~~l~~L~~L~l~~n 198 (637)
|++|.+-+|.++.-.. .+..+++|++||+..-
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888887766322 4567788888887664
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=7.7e-06 Score=88.68 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=64.8
Q ss_pred CCCcEEECCCCCCCCCC-CchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCC
Q 042944 140 SNLLALDLNSNQLAGPI-PDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK 216 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l-~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~ 216 (637)
.+|++|++++......- +...-..+|+|+.|.+++-.+.. +.....++++|..||++++.++.. .+++.++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk---- 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLK---- 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccc----
Confidence 34666666664322111 11122345666666666654433 334445566666666666666432 4555555
Q ss_pred CcccEEEcCCCCCCC--CcCCcccCCCccEEEccCCcCCCCC------CCcCCCCCCCcEEEcCCCCCC
Q 042944 217 NSLEILKLGGNKLTG--SLPDITEFSSLQELHLFDNKLDGSF------PEKFRKPSPLVILNLDGNQLW 277 (637)
Q Consensus 217 ~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~l~~~~~~ 277 (637)
+|++|.+.+-.+.. .+.++..+++|+.||++........ .+.-..+|.|+.||.++..+.
T Consensus 196 -nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 -NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66666665554442 2224556666666666654332111 011123556666666655543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=7.8e-05 Score=74.44 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=106.3
Q ss_pred ccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCC-CCcccCchhhhccCCCcE
Q 042944 429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDN-LLSGELPDCLLRWQALAV 507 (637)
Q Consensus 429 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 507 (637)
+..+..++.|++++|.++.. |..+++|++|.+++|.-....+.... ++|++|++++| .+. .+| ++|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PVLPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CCCCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cccce
Confidence 34568899999999987765 56678999999998655444443221 78999999999 444 444 45888
Q ss_pred EeccCccCCCCccccccccCCccccCCCCCcEEEcCCCc-cc-ccCChhhhhcCCCCcEEeccCccccccCCccccCCCC
Q 042944 508 LNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK-FS-GTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSK 585 (637)
Q Consensus 508 L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~-l~-~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 585 (637)
|++.++..... +.+|. +|+.|.+.+++ .. ..++..+ .++|++|++++|... .+|..+. .+
T Consensus 117 L~L~~n~~~~L------~~LPs------sLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 117 LEIKGSATDSI------KNVPN------GLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred EEeCCCCCccc------ccCcc------hHhheecccccccccccccccc---CCcccEEEecCCCcc-cCccccc--cc
Confidence 88887765421 14553 46778875433 21 1222211 368999999999976 5665554 69
Q ss_pred CcEeeCCCCcc------cccccccccccccceeeccCCCeeEEE
Q 042944 586 IQLLDFSLNSI------SGAIPKCINNLTAMVEKASSNSTITHI 623 (637)
Q Consensus 586 L~~L~ls~n~l------~~~~p~~l~~l~~L~~l~l~~n~l~~~ 623 (637)
|+.|+++.+.. ...+|+.+ .+.....+.++.+.++.-
T Consensus 179 Lk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~ 221 (426)
T PRK15386 179 LQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDK 221 (426)
T ss_pred CcEEEecccccccccCccccccccc-EechhhhcccCHHHhhcc
Confidence 99999988731 23556555 444444444444444443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=1.2e-05 Score=73.81 Aligned_cols=81 Identities=26% Similarity=0.258 Sum_probs=44.7
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCc-hhccCC
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPD-YAFSNM 164 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~-~~~~~l 164 (637)
.+.+++.|++.+|++.++ +.+.+++.|+.|.||-|+|+...+ +.++ ++|++|.|..|.|. .+.. ..+.++
T Consensus 17 dl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p--l~rC-trLkElYLRkN~I~-sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP--LQRC-TRLKELYLRKNCIE-SLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh--HHHH-HHHHHHHHHhcccc-cHHHHHHHhcC
Confidence 355666666666666665 345555666666666666654443 4454 66666666666555 4332 123455
Q ss_pred CCCCEEEcCCC
Q 042944 165 TALQHLNLSLN 175 (637)
Q Consensus 165 ~~L~~L~L~~n 175 (637)
++|+.|.|..|
T Consensus 88 psLr~LWL~EN 98 (388)
T KOG2123|consen 88 PSLRTLWLDEN 98 (388)
T ss_pred chhhhHhhccC
Confidence 55555555544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.00078 Score=57.25 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=62.4
Q ss_pred hhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhcc
Q 042944 83 TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS 162 (637)
Q Consensus 83 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~ 162 (637)
.|..+++|+.+.+.. .+..+.. .++..+++|+.+.+..+ +.......+... ++++.+.+.+ .+. .++...|.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~---~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~-~~l~~i~~~~-~~~-~i~~~~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGE---NAFSNCTSLKSINFPNN-LTSIGDNAFSNC-KSLESITFPN-NLK-SIGDNAFS 78 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-T---TTTTT-TT-SEEEESST-TSCE-TTTTTT--TT-EEEEETS-TT--EE-TTTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeCh---hhccccccccccccccc-ccccceeeeecc-cccccccccc-ccc-cccccccc
Confidence 467778888888874 4555554 45666678888888775 554444444444 7888888875 554 66666788
Q ss_pred CCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcc
Q 042944 163 NMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212 (637)
Q Consensus 163 ~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 212 (637)
.+++|+.+.+..+ +..++ ..|.++ +|+.+.+.. .+.......|.++.
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 8888888888765 66654 356666 888888776 34435556666655
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=1.5e-05 Score=73.19 Aligned_cols=99 Identities=24% Similarity=0.358 Sum_probs=65.0
Q ss_pred CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh--hcCCCCCCc
Q 042944 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK--SFGNMCGLK 191 (637)
Q Consensus 114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~ 191 (637)
+.+.+.|++-+|.+.++. +..-++.|++|.|+-|+|+ .+.. +..|++|++|.|+.|.|.++.+ .+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 356667777777776544 3344477777777777776 6665 6777777777777777777543 466777777
Q ss_pred EEEcCCCcCCCCchh-----HhhhcccCCCCcccEEE
Q 042944 192 TLHLFDNNLTGQLPE-----LFLNLSGCSKNSLEILK 223 (637)
Q Consensus 192 ~L~l~~n~i~~~~~~-----~l~~l~~~~~~~L~~L~ 223 (637)
.|.+..|...+..+. .+.-++ +|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LP-----nLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLP-----NLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcc-----cchhcc
Confidence 777777766554433 234444 666665
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00019 Score=65.99 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC--CCCchhhhHHHhhcCCCcEEECCCCCCC--CCCCchhc
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC--GLSNSAYHWLFKISSNLLALDLNSNQLA--GPIPDYAF 161 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~~~~~~~~L~~L~L~~n~l~--~~l~~~~~ 161 (637)
.+..|+.|++.++.++.. ..+-.+++|+.|.++.| ++...... +...+|+|++|++++|++. .+++. +
T Consensus 41 ~~~~le~ls~~n~gltt~-----~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~p--l 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-----TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRP--L 112 (260)
T ss_pred cccchhhhhhhccceeec-----ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccch--h
Confidence 344555555555555544 34445566666666666 33322222 2222366666666666554 11222 3
Q ss_pred cCCCCCCEEEcCCCcccc
Q 042944 162 SNMTALQHLNLSLNQISA 179 (637)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~ 179 (637)
..+.+|..|++.+|..+.
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 344445555555544333
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=0.00011 Score=78.63 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=16.2
Q ss_pred CCCCCCEEEcCCCc-ccc--hhhhcCCCCCCcEEEcCCCc
Q 042944 163 NMTALQHLNLSLNQ-ISA--ISKSFGNMCGLKTLHLFDNN 199 (637)
Q Consensus 163 ~l~~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~l~~n~ 199 (637)
.+++|+.|+++++. +++ +......+++|++|.+.+|.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34455555555554 333 11112224555555544444
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.03 E-value=0.00019 Score=76.81 Aligned_cols=242 Identities=22% Similarity=0.130 Sum_probs=133.2
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC-C-CC--chhhhHHHhhcCCCcEEECCCCC-CCCCCCc
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC-G-LS--NSAYHWLFKISSNLLALDLNSNQ-LAGPIPD 158 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~-i~--~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~ 158 (637)
...++.|+.|.+.++.-..... ..+....+++|+.|+++++ . +. ......+...+++|+.|+++++. ++ +..-
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l 261 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGL 261 (482)
T ss_pred HhhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhH
Confidence 3457899999998874333210 1244566799999999873 2 22 11223355556889999999988 55 4333
Q ss_pred hhcc-CCCCCCEEEcCCCc-ccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC
Q 042944 159 YAFS-NMTALQHLNLSLNQ-ISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234 (637)
Q Consensus 159 ~~~~-~l~~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~ 234 (637)
..+. .+++|++|.+.+|. +++ +.....++++|++|++++|... ....+... ...+++++.+.+.....
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~l~~~-~~~c~~l~~l~~~~~~~----- 333 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSGLEAL-LKNCPNLRELKLLSLNG----- 333 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHHHHHH-HHhCcchhhhhhhhcCC-----
Confidence 2333 48899999988887 565 5556678899999999988764 11112111 11123666655433321
Q ss_pred CcccCCCccEEEccCCcC---CCCCCCcCCCCCCCcEEEcCCCCCCCCC--CCCCCCCCCCEEEccCCcCCCCChhhhcC
Q 042944 235 DITEFSSLQELHLFDNKL---DGSFPEKFRKPSPLVILNLDGNQLWGSL--PDLSVFPFLTRLDVSDSRLNGTVSEGLGR 309 (637)
Q Consensus 235 ~~~~~~~L~~L~l~~n~i---~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 309 (637)
++.++.+.+.+... ..........+++++.+.+..+...... ..+.+++.|+ ..+ ......
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---------~~~~~~ 399 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---------ELRLCR 399 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---------HHHhcc
Confidence 33444444443322 1122234556777777777776633221 1222244441 111 111222
Q ss_pred CCCCCEEecCCCcCCCccchhhhcC-CCCCcEEEccCCccc
Q 042944 310 LSKLEFLDLFGNSLEGMITESHVSN-LSKLKYMDFSFNSLA 349 (637)
Q Consensus 310 l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~~~ 349 (637)
...++.|+++.+............. +..++.+++.++...
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 2237777777776543322222222 566677777666543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.01 E-value=0.0027 Score=53.88 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=41.5
Q ss_pred CcCCCCCCCcEEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCC
Q 042944 258 EKFRKPSPLVILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLS 336 (637)
Q Consensus 258 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 336 (637)
.+|.++++|+.+.+.. .+..+....+. +++++.+.+.++ +......++.++++++.+.+.+ .+.. .+...|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccc-cccccccccc
Confidence 3455555566665553 23323332222 445555555553 4434444455555566666644 2221 2233555566
Q ss_pred CCcEEEccCCcccccccCCCCCCCceeEEeccC
Q 042944 337 KLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH 369 (637)
Q Consensus 337 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 369 (637)
+++.+++..+ +.......+... .++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666666543 333333344443 555554443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00031 Score=64.62 Aligned_cols=83 Identities=30% Similarity=0.456 Sum_probs=43.5
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCC--CCCCCCCchhccCCCCCCEEEcCCCcccchh--hhcCCCCCC
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSN--QLAGPIPDYAFSNMTALQHLNLSLNQISAIS--KSFGNMCGL 190 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n--~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L 190 (637)
..|+.|++.+..++.... +..+ ++|++|.++.| .+.+.++. ....+++|++|++++|+|..+. ..+..+.+|
T Consensus 43 ~~le~ls~~n~gltt~~~--~P~L-p~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN--FPKL-PKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeeccc--CCCc-chhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 455555555555543221 3333 66666666666 44433433 2334466666666666665431 123445556
Q ss_pred cEEEcCCCcCC
Q 042944 191 KTLHLFDNNLT 201 (637)
Q Consensus 191 ~~L~l~~n~i~ 201 (637)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 66666666544
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.25 E-value=3e-05 Score=80.47 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=103.0
Q ss_pred ccEEECCCCcCCCccc----ccccCCCCCCeEeCCCCcCcCCCCCC-CCCccEEEcccccccCcccccccccCCCccEEe
Q 042944 411 LYYLNLSHNHLEGTVL----DLSLNYAGYPGIDLSSNDFEGPVPPV-PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLD 485 (637)
Q Consensus 411 L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 485 (637)
+..+.+.+|.+..... ..+...+.|..|++++|.+....... ...++.. ...+++|+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~------------------~~~l~~L~ 150 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP------------------QCLLQTLE 150 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc------------------hHHHHHHH
Confidence 6777888888775432 33445666666777776665211100 0000000 03344455
Q ss_pred CCCCCCccc----CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCC----hhhhh
Q 042944 486 VSDNLLSGE----LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIP----AWIGD 557 (637)
Q Consensus 486 l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~----~~l~~ 557 (637)
+..|.+++. +.+.+...+.++.++++.|.+...........++..+....++++|.+++|.++...- ..+.
T Consensus 151 l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~- 229 (478)
T KOG4308|consen 151 LVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA- 229 (478)
T ss_pred hhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-
Confidence 555555432 3445555667777777777664221110111111112245667777777777652111 1122
Q ss_pred cCCC-CcEEeccCcccccc----CCccccCC-CCCcEeeCCCCcccc----cccccccccccceeeccCCCeeE
Q 042944 558 TLPK-LAILSLRSNQFHGS----IPRNLCRL-SKIQLLDFSLNSISG----AIPKCINNLTAMVEKASSNSTIT 621 (637)
Q Consensus 558 ~l~~-L~~L~L~~n~~~~~----~~~~l~~l-~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~l~l~~n~l~ 621 (637)
..+. +.+|++.+|++.+. +...+..+ ..++.++++.|++++ .+++.+..+++++++.+++|.+.
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3444 66677777776532 33445555 677788888887764 33445567777888888887774
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0035 Score=34.15 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=11.8
Q ss_pred CCcEeeCCCCcccccccccccc
Q 042944 585 KIQLLDFSLNSISGAIPKCINN 606 (637)
Q Consensus 585 ~L~~L~ls~n~l~~~~p~~l~~ 606 (637)
+|++|||++|.++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3556666666666 55555543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.006 Score=33.23 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=9.7
Q ss_pred CCEEEcCCCcccchhhhcC
Q 042944 167 LQHLNLSLNQISAISKSFG 185 (637)
Q Consensus 167 L~~L~L~~n~l~~l~~~~~ 185 (637)
|++|++++|+++.+|..|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.33 E-value=0.00033 Score=72.92 Aligned_cols=111 Identities=27% Similarity=0.318 Sum_probs=63.9
Q ss_pred CcEEEcCCCCCCCCCcccc-cccCCCCCccEEECCCCCCCchhhhHHHhhcC----CCcEEECCCCCCCCC----CCchh
Q 042944 90 LRDLYLASSTLLSINRPSL-SSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS----NLLALDLNSNQLAGP----IPDYA 160 (637)
Q Consensus 90 L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~----~L~~L~L~~n~l~~~----l~~~~ 160 (637)
+..|.|.+|.+.+...... .++...++|..|++++|.+.+.....+...++ .+++|++..|.+++. +.. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence 6777777777766532221 34455677778888888777655554444322 355667777766522 222 3
Q ss_pred ccCCCCCCEEEcCCCcccc-----hhhhcC----CCCCCcEEEcCCCcCC
Q 042944 161 FSNMTALQHLNLSLNQISA-----ISKSFG----NMCGLKTLHLFDNNLT 201 (637)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~-----l~~~~~----~l~~L~~L~l~~n~i~ 201 (637)
+....+++.++++.|.+.. ++..+. ...++++|.+.+|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 4446677777777776643 223333 3556666666666554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.0054 Score=54.32 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC-CCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchhccCCCC
Q 042944 89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-LSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYAFSNMTA 166 (637)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~~~~l~~ 166 (637)
.++.++-+++.|..+. ++.+.+++.++.|.+.+|. +.+.....+....++|+.|++++|. |+ +-.-..+.++++
T Consensus 102 ~IeaVDAsds~I~~eG---le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG---LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHH---HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhh
Confidence 3555555555555443 3455555666666665553 3333444444455666666666553 33 222223445555
Q ss_pred CCEEEcCC
Q 042944 167 LQHLNLSL 174 (637)
Q Consensus 167 L~~L~L~~ 174 (637)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 55555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.012 Score=52.12 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc-cchhhhhcCCCccEEECCCC-cCCCcccccccCCCCC
Q 042944 358 PPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA-VPSWFWDLSPNLYYLNLSHN-HLEGTVLDLSLNYAGY 435 (637)
Q Consensus 358 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L 435 (637)
.-..++.++.+++.+..+-.+-+.+++.++.|.+.+|.-.+. ....+....++|+.|+|++| +||+.....+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 334567777777776655556677777888888877764433 33444555688888888877 5777666777777777
Q ss_pred CeEeCCCC
Q 042944 436 PGIDLSSN 443 (637)
Q Consensus 436 ~~L~l~~n 443 (637)
+.|.+.+=
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77776653
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.55 E-value=0.047 Score=27.49 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=3.7
Q ss_pred CCEEEcCCCccc
Q 042944 167 LQHLNLSLNQIS 178 (637)
Q Consensus 167 L~~L~L~~n~l~ 178 (637)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.17 E-value=0.03 Score=28.21 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=5.9
Q ss_pred CCcEeeCCCCccc
Q 042944 585 KIQLLDFSLNSIS 597 (637)
Q Consensus 585 ~L~~L~ls~n~l~ 597 (637)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.50 E-value=0.18 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=12.1
Q ss_pred CCCcEEEcCCCcccccCChhhh
Q 042944 535 NELKIIDAGDNKFSGTIPAWIG 556 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~ 556 (637)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666665 5555544
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.50 E-value=0.18 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=12.1
Q ss_pred CCCcEEEcCCCcccccCChhhh
Q 042944 535 NELKIIDAGDNKFSGTIPAWIG 556 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~ 556 (637)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666665 5555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.07 E-value=0.21 Score=28.32 Aligned_cols=21 Identities=52% Similarity=0.755 Sum_probs=11.0
Q ss_pred CCCcEEECCCCCCCCCCCchhc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAF 161 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~ 161 (637)
++|++|+|++|.+. .+|.++|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 44555555555555 5554443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.07 E-value=0.21 Score=28.32 Aligned_cols=21 Identities=52% Similarity=0.755 Sum_probs=11.0
Q ss_pred CCCcEEECCCCCCCCCCCchhc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAF 161 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~ 161 (637)
++|++|+|++|.+. .+|.++|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 44555555555555 5554443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.01 E-value=0.0089 Score=54.00 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=62.2
Q ss_pred hhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCc
Q 042944 499 LLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPR 578 (637)
Q Consensus 499 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~ 578 (637)
+......+.||++.|++. .+-..++-++.|..||++.|++. ..|....+ ...+..+++.+|..+ ..|.
T Consensus 38 i~~~kr~tvld~~s~r~v---------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV---------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred hhccceeeeehhhhhHHH---------hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCc
Confidence 444566777777777765 44455666777777888888776 77777663 667777777777776 6777
Q ss_pred cccCCCCCcEeeCCCCccc
Q 042944 579 NLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 579 ~l~~l~~L~~L~ls~n~l~ 597 (637)
++.+.+.+++++.-+|++.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 7788888888887777765
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.84 E-value=0.0091 Score=53.97 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC
Q 042944 155 PIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234 (637)
Q Consensus 155 ~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~ 234 (637)
.+|...+......+.||++.|++..+...|..++.|..|+++.|++. ..|..+++.. .+..++...|.....+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~-----e~~~~~~~~n~~~~~p~ 105 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQR-----ETVNAASHKNNHSQQPK 105 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHH-----HHHHHHhhccchhhCCc
Confidence 45544555666667777777766666666666666777777777665 5666666666 66666666666665555
Q ss_pred CcccCCCccEEEccCCcC
Q 042944 235 DITEFSSLQELHLFDNKL 252 (637)
Q Consensus 235 ~~~~~~~L~~L~l~~n~i 252 (637)
.....+.+++++..++.+
T Consensus 106 s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccccCCcchhhhccCcc
Confidence 566666666666665554
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.43 E-value=0.14 Score=28.38 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=12.0
Q ss_pred CCccEEECCCCCCCchhhhHH
Q 042944 115 TSLTLLDLSSCGLSNSAYHWL 135 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~ 135 (637)
++|++|++++|.+++..+.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 567777777777665555444
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.83 E-value=0.12 Score=28.77 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=7.5
Q ss_pred CCCcEeeCCCCccccc
Q 042944 584 SKIQLLDFSLNSISGA 599 (637)
Q Consensus 584 ~~L~~L~ls~n~l~~~ 599 (637)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555555555555543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.13 E-value=0.91 Score=26.33 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=16.7
Q ss_pred CCccEEECCCCCCCchhhhHHHhh
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKI 138 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~ 138 (637)
++|++|+|++|.+.+.....+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 567888888888876666555544
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.33 E-value=0.53 Score=26.75 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=12.8
Q ss_pred cccceeeccCCCeeEEEE
Q 042944 607 LTAMVEKASSNSTITHIY 624 (637)
Q Consensus 607 l~~L~~l~l~~n~l~~~~ 624 (637)
++.|+.|++++|+|++++
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 356777777777777764
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.31 E-value=6.2 Score=40.29 Aligned_cols=65 Identities=25% Similarity=0.245 Sum_probs=41.3
Q ss_pred CccEEeCCCCCCcccC---chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCccc
Q 042944 480 YFSYLDVSDNLLSGEL---PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFS 548 (637)
Q Consensus 480 ~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~ 548 (637)
-+..+.++.|.+.... ...+..-+.+.+|++++|...+.... .+|...+.-.++.....+.|..+
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap----~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAP----PLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCC----cCccccCCCCccCCCCCCCCCcc
Confidence 3455666666665322 22344457788888888877654433 55666666667888888888765
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.76 E-value=7.9 Score=39.56 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=10.1
Q ss_pred CCCCEEEccCCcCCCCChhhh
Q 042944 287 PFLTRLDVSDSRLNGTVSEGL 307 (637)
Q Consensus 287 ~~L~~L~l~~n~~~~~~~~~l 307 (637)
+.+++++++.|.+.+..+..+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 344555555555554444333
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.56 E-value=1.6 Score=24.73 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=11.2
Q ss_pred CCCEEEcCCCcccchhh
Q 042944 166 ALQHLNLSLNQISAISK 182 (637)
Q Consensus 166 ~L~~L~L~~n~l~~l~~ 182 (637)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777776666654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.69 E-value=3.3 Score=43.04 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=15.9
Q ss_pred CCccEEECCCCCCCchh-hhHHHhhcCCCcEEECCCC
Q 042944 115 TSLTLLDLSSCGLSNSA-YHWLFKISSNLLALDLNSN 150 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~-~~~~~~~~~~L~~L~L~~n 150 (637)
+.+..++|++|++.... ..++..-.|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555555443221 1123333355555555555
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.89 E-value=4.4 Score=22.83 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=9.0
Q ss_pred CCccEEECCCCC-CCchh
Q 042944 115 TSLTLLDLSSCG-LSNSA 131 (637)
Q Consensus 115 ~~L~~L~L~~n~-i~~~~ 131 (637)
++|++|++++|. +++..
T Consensus 2 ~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 2 PNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCEeCCCCCCCcCHHH
Confidence 456666666653 44433
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.57 E-value=7.5 Score=40.59 Aligned_cols=36 Identities=33% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCCCCEEEcCCCcccch---hhhcCCCCCCcEEEcCCC
Q 042944 163 NMTALQHLNLSLNQISAI---SKSFGNMCGLKTLHLFDN 198 (637)
Q Consensus 163 ~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~l~~n 198 (637)
+.+.+..++|++|++..+ ..--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344455555555544442 111223445555555555
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.68 E-value=41 Score=42.79 Aligned_cols=30 Identities=37% Similarity=0.428 Sum_probs=14.8
Q ss_pred cCCCcccccCChhhhhcCCCCcEEeccCccc
Q 042944 542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQF 572 (637)
Q Consensus 542 ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~ 572 (637)
|++|+|+ .+|...|+.+++|+.|+|++|++
T Consensus 2 LSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKIS-TIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCC-ccChHHhccCCCceEEEeeCCcc
Confidence 4445554 44444444455555555555543
Done!