Query 042944
Match_columns 637
No_of_seqs 403 out of 3833
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.9E-63 2E-67 553.5 36.0 524 83-622 121-718 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.5E-59 2.9E-63 519.9 32.0 570 27-621 35-693 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-53 7.4E-58 472.3 41.9 546 58-622 25-623 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-52 1.4E-56 462.0 43.7 517 88-624 25-600 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.1E-52 7.1E-57 458.2 39.3 491 116-622 34-561 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 7.2E-51 2.5E-55 446.0 34.3 505 88-622 32-559 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.1E-49 7.1E-54 434.4 33.8 488 60-598 35-561 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-48 1.1E-52 438.8 32.1 510 86-622 22-561 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-47 5.9E-52 419.2 33.0 505 89-626 12-539 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.1E-46 2.4E-50 419.5 34.0 501 58-598 24-561 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 7.2E-46 2.4E-50 403.6 30.8 484 88-599 28-533 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.2E-44 4E-49 394.1 31.7 483 59-577 29-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-44 4E-49 392.0 31.5 480 87-620 4-509 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-44 1.8E-48 386.9 31.9 463 87-601 25-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 5.3E-44 1.8E-48 383.9 22.0 447 118-598 3-482 (520)
16 2z7x_B TOLL-like receptor 1, v 100.0 1E-42 3.6E-47 373.9 29.9 450 91-575 3-483 (520)
17 4eco_A Uncharacterized protein 100.0 7.2E-44 2.5E-48 389.9 16.5 357 227-624 193-603 (636)
18 4eco_A Uncharacterized protein 100.0 4.7E-44 1.6E-48 391.3 14.1 460 88-600 81-603 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-41 1.5E-45 371.1 34.8 507 89-622 53-581 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 1.2E-41 4.3E-46 377.6 26.2 385 198-623 435-866 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 1.6E-40 5.5E-45 368.7 26.0 437 165-625 323-844 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-40 4.6E-45 360.3 22.8 454 114-599 30-512 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-39 8.6E-44 357.0 33.1 523 39-598 38-581 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.5E-40 3.3E-44 353.6 28.4 456 86-575 29-512 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 4.3E-37 1.5E-41 321.5 27.2 390 140-624 11-432 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 4.7E-37 1.6E-41 321.2 25.2 415 87-607 10-439 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.1E-36 3.6E-41 321.6 27.8 364 218-600 31-411 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 1.3E-35 4.4E-40 313.2 31.3 376 144-577 14-412 (455)
29 3bz5_A Internalin-J, INLJ; leu 100.0 7.6E-36 2.6E-40 312.3 26.1 357 111-580 38-394 (457)
30 1o6v_A Internalin A; bacterial 100.0 4.9E-34 1.7E-38 301.3 35.4 344 140-574 46-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-34 4.7E-39 302.8 28.3 362 130-605 33-395 (457)
32 1o6v_A Internalin A; bacterial 100.0 5.6E-34 1.9E-38 300.8 33.1 342 218-598 47-389 (466)
33 4fmz_A Internalin; leucine ric 100.0 6.6E-32 2.3E-36 274.0 31.8 307 84-446 40-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.8E-36 271.6 30.7 306 111-467 40-346 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 2.4E-32 8.3E-37 289.7 26.1 322 242-599 13-335 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 3.4E-32 1.1E-36 280.7 25.5 311 238-599 43-354 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 4.1E-32 1.4E-36 280.0 24.1 310 286-622 44-353 (390)
38 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.5E-36 283.4 27.9 318 142-516 13-333 (477)
39 3oja_B Anopheles plasmodium-re 100.0 2.5E-31 8.5E-36 289.1 25.6 310 239-599 50-360 (597)
40 3oja_B Anopheles plasmodium-re 100.0 3.7E-31 1.3E-35 287.8 24.5 309 286-621 50-358 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-33 7.6E-38 296.7 -4.8 353 115-517 3-412 (461)
42 1xku_A Decorin; proteoglycan, 100.0 1.6E-28 5.6E-33 246.9 28.4 289 265-619 32-330 (330)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-32 5.6E-37 290.1 -0.9 356 88-446 3-411 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 9.9E-29 3.4E-33 248.7 25.5 288 265-619 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-28 3.6E-33 248.5 25.0 248 336-621 54-307 (332)
46 1xku_A Decorin; proteoglycan, 100.0 3.2E-28 1.1E-32 244.8 26.8 249 337-622 53-307 (330)
47 3ogk_B Coronatine-insensitive 100.0 1.1E-30 3.7E-35 285.2 7.4 231 84-344 69-326 (592)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-28 3.7E-33 245.6 17.1 248 360-620 50-303 (313)
49 3ogk_B Coronatine-insensitive 100.0 1.1E-29 3.7E-34 277.3 6.3 302 111-441 69-411 (592)
50 1ogq_A PGIP-2, polygalacturona 99.9 8.3E-28 2.8E-32 239.2 15.3 248 311-597 50-304 (313)
51 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-27 1.1E-31 235.8 8.0 238 359-618 33-272 (317)
52 2p1m_B Transport inhibitor res 99.9 1.7E-28 5.7E-33 268.1 -2.0 427 83-571 61-542 (594)
53 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4.1E-29 234.0 27.9 269 241-609 41-309 (622)
54 2z66_A Variable lymphocyte rec 99.9 6.4E-26 2.2E-30 225.5 16.2 229 87-326 27-263 (306)
55 4fcg_A Uncharacterized protein 99.9 6.9E-26 2.3E-30 226.7 16.3 236 361-624 82-317 (328)
56 2z66_A Variable lymphocyte rec 99.9 1.5E-25 5E-30 222.8 18.0 276 118-429 10-294 (306)
57 2z80_A TOLL-like receptor 2, v 99.9 5.1E-25 1.8E-29 223.5 21.8 282 218-550 32-316 (353)
58 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-24 1.1E-28 230.8 28.6 200 382-622 99-298 (622)
59 2p1m_B Transport inhibitor res 99.9 2.6E-28 9.1E-33 266.5 -5.1 256 84-349 101-385 (594)
60 2z80_A TOLL-like receptor 2, v 99.9 7E-25 2.4E-29 222.6 20.2 277 114-446 30-314 (353)
61 3zyj_A Leucine-rich repeat-con 99.9 2.9E-24 1E-28 224.7 23.8 112 498-620 180-291 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-25 3.2E-29 214.6 18.6 222 91-325 14-239 (285)
63 3zyi_A Leucine-rich repeat-con 99.9 3.3E-24 1.1E-28 225.2 23.6 132 479-621 171-303 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-25 4.9E-30 223.7 10.9 238 362-621 12-250 (317)
65 3zyj_A Leucine-rich repeat-con 99.9 4.6E-24 1.6E-28 223.2 22.0 229 88-351 64-294 (440)
66 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-24 1.2E-28 210.4 19.5 265 143-443 14-284 (285)
67 3zyi_A Leucine-rich repeat-con 99.9 4.6E-24 1.6E-28 224.0 20.8 248 90-353 56-307 (452)
68 4fcg_A Uncharacterized protein 99.9 2.4E-24 8.3E-29 215.4 16.9 85 140-232 81-165 (328)
69 3oja_A Leucine-rich immune mol 99.9 6.9E-25 2.3E-29 231.4 12.8 236 359-616 33-270 (487)
70 3oja_A Leucine-rich immune mol 99.9 3E-24 1E-28 226.6 13.3 218 382-621 32-250 (487)
71 1wwl_A Monocyte differentiatio 99.9 1.9E-25 6.4E-30 222.3 3.3 201 409-622 95-310 (312)
72 1wwl_A Monocyte differentiatio 99.9 1.6E-24 5.5E-29 215.6 6.3 252 111-397 39-309 (312)
73 2z62_A TOLL-like receptor 4, v 99.9 3.7E-22 1.3E-26 195.0 17.8 204 115-325 28-238 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 5.8E-22 2E-26 193.6 17.9 203 385-599 29-239 (276)
75 3rfs_A Internalin B, repeat mo 99.9 5.3E-22 1.8E-26 193.2 17.0 231 52-310 13-245 (272)
76 1p9a_G Platelet glycoprotein I 99.9 2.7E-21 9.2E-26 189.6 20.8 201 84-299 6-207 (290)
77 2o6q_A Variable lymphocyte rec 99.9 3.4E-21 1.2E-25 187.3 20.4 199 385-598 17-219 (270)
78 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.4E-26 189.3 18.0 199 140-355 41-241 (272)
79 1h6u_A Internalin H; cell adhe 99.9 4.4E-21 1.5E-25 190.0 19.6 193 84-299 37-229 (308)
80 1p9a_G Platelet glycoprotein I 99.9 5.2E-21 1.8E-25 187.5 19.2 202 380-598 6-209 (290)
81 2o6q_A Variable lymphocyte rec 99.9 2.1E-20 7.2E-25 181.7 23.1 201 115-349 16-218 (270)
82 3goz_A Leucine-rich repeat-con 99.9 6.6E-23 2.3E-27 208.5 5.1 260 315-599 2-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 1.7E-22 5.8E-27 205.4 7.4 253 365-622 3-298 (362)
84 4glp_A Monocyte differentiatio 99.9 7.7E-22 2.6E-26 196.1 9.0 221 385-622 65-308 (310)
85 1h6u_A Internalin H; cell adhe 99.8 3.9E-20 1.3E-24 183.2 20.6 190 115-349 41-230 (308)
86 2xwt_C Thyrotropin receptor; s 99.8 5.2E-21 1.8E-25 182.5 11.7 196 89-297 32-236 (239)
87 2ca6_A RAN GTPase-activating p 99.8 4.4E-22 1.5E-26 204.5 4.2 183 162-349 91-316 (386)
88 3m19_A Variable lymphocyte rec 99.8 5E-20 1.7E-24 176.9 17.4 175 410-598 15-193 (251)
89 2xwt_C Thyrotropin receptor; s 99.8 2E-20 6.9E-25 178.4 12.7 199 115-346 31-236 (239)
90 2ca6_A RAN GTPase-activating p 99.8 6.4E-22 2.2E-26 203.3 2.3 256 82-344 26-338 (386)
91 4glp_A Monocyte differentiatio 99.8 2.2E-20 7.4E-25 185.6 11.5 80 480-573 225-307 (310)
92 2ast_B S-phase kinase-associat 99.8 6.6E-21 2.2E-25 192.0 6.9 221 115-346 47-282 (336)
93 2ast_B S-phase kinase-associat 99.8 1.5E-20 5E-25 189.5 7.0 198 189-394 48-257 (336)
94 3cvr_A Invasion plasmid antige 99.8 7.6E-19 2.6E-23 186.5 17.3 189 385-609 60-255 (571)
95 3m19_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 162.3 21.5 179 218-399 15-194 (251)
96 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.8E-23 169.3 17.2 193 54-276 20-212 (291)
97 3cvr_A Invasion plasmid antige 99.8 5.3E-18 1.8E-22 180.0 18.4 179 409-622 59-244 (571)
98 4ay9_X Follicle-stimulating ho 99.8 3.7E-18 1.3E-22 172.5 15.9 220 362-596 32-258 (350)
99 2v9t_B SLIT homolog 2 protein 99.8 5E-18 1.7E-22 159.0 14.5 151 436-597 14-165 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 8.3E-18 2.8E-22 157.5 15.1 155 436-599 14-168 (220)
101 4ay9_X Follicle-stimulating ho 99.8 7.1E-18 2.4E-22 170.4 15.6 103 268-372 13-116 (350)
102 1h6t_A Internalin B; cell adhe 99.8 1.6E-17 5.4E-22 162.9 17.2 81 114-201 45-125 (291)
103 1m9s_A Internalin B; cell inva 99.8 1.7E-17 5.7E-22 178.3 18.4 197 53-279 16-212 (605)
104 2o6s_A Variable lymphocyte rec 99.7 1.1E-17 3.7E-22 155.7 14.6 179 388-609 11-190 (208)
105 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.6E-22 169.0 14.3 175 436-621 21-202 (361)
106 3e6j_A Variable lymphocyte rec 99.7 2.2E-17 7.6E-22 155.7 14.8 153 435-599 21-174 (229)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 4E-17 1.4E-21 152.9 15.6 152 457-621 14-166 (220)
108 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.8E-22 178.3 13.7 191 115-325 21-211 (605)
109 2o6s_A Variable lymphocyte rec 99.7 1.7E-16 5.8E-21 147.6 16.9 149 143-323 10-160 (208)
110 1xeu_A Internalin C; cellular 99.7 1.5E-16 5.1E-21 153.4 15.8 173 53-254 14-186 (263)
111 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6.2E-21 148.4 15.4 153 457-622 14-166 (220)
112 1dce_A Protein (RAB geranylger 99.7 2.6E-19 9E-24 191.2 -6.1 204 381-615 346-567 (567)
113 3e6j_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 146.5 16.9 151 456-621 21-172 (229)
114 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.3E-21 145.8 12.0 152 85-253 41-194 (197)
115 4ezg_A Putative uncharacterize 99.7 2.4E-16 8.3E-21 145.0 12.4 153 112-278 41-195 (197)
116 1xeu_A Internalin C; cellular 99.7 9.9E-17 3.4E-21 154.6 10.1 58 140-201 41-98 (263)
117 2xot_A Amphoterin-induced prot 99.7 1.7E-16 5.9E-21 160.8 10.2 173 91-276 21-201 (361)
118 2ell_A Acidic leucine-rich nuc 99.6 3.3E-16 1.1E-20 140.1 9.7 134 479-624 24-163 (168)
119 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.6E-20 137.7 11.7 132 457-601 11-143 (192)
120 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 133.0 9.6 128 479-617 17-149 (149)
121 2wfh_A SLIT homolog 2 protein 99.6 4.8E-15 1.7E-19 135.4 12.8 127 457-597 13-139 (193)
122 3sb4_A Hypothetical leucine ri 99.6 6.9E-16 2.4E-20 154.4 7.3 285 86-389 23-326 (329)
123 1dce_A Protein (RAB geranylger 99.6 2E-17 7E-22 176.6 -5.0 195 112-318 346-567 (567)
124 3sb4_A Hypothetical leucine ri 99.6 4.3E-15 1.5E-19 148.6 9.2 215 383-615 100-328 (329)
125 4fdw_A Leucine rich hypothetic 99.6 1.4E-13 4.9E-18 140.4 20.5 262 140-418 113-379 (401)
126 2ell_A Acidic leucine-rich nuc 99.6 8.3E-15 2.8E-19 131.0 9.9 131 140-277 24-160 (168)
127 1w8a_A SLIT protein; signaling 99.6 2.2E-14 7.5E-19 131.1 12.7 172 436-620 11-182 (192)
128 4b8c_D Glucose-repressible alc 99.6 1.1E-15 3.7E-20 168.6 4.6 178 425-620 216-403 (727)
129 4b8c_D Glucose-repressible alc 99.6 6.1E-16 2.1E-20 170.6 2.0 187 88-297 173-369 (727)
130 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.3E-19 130.8 9.6 128 479-621 19-153 (176)
131 4fdw_A Leucine rich hypothetic 99.5 3.1E-13 1E-17 137.9 20.3 270 86-395 111-381 (401)
132 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.3E-19 125.8 9.7 126 140-272 17-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.5 1.4E-13 4.7E-18 125.7 13.8 127 436-573 13-139 (193)
134 2o6r_A Variable lymphocyte rec 99.5 9.5E-14 3.2E-18 125.2 12.4 132 456-601 9-141 (177)
135 4fs7_A Uncharacterized protein 99.5 3.4E-13 1.2E-17 138.4 18.1 311 81-442 64-375 (394)
136 4fs7_A Uncharacterized protein 99.5 3.1E-13 1.1E-17 138.6 17.6 307 109-464 65-376 (394)
137 2o6r_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 124.0 13.2 128 436-574 10-138 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.5 5.7E-14 1.9E-18 126.5 7.8 131 84-229 15-152 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.6E-20 138.6 -5.2 127 479-621 48-185 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 116.5 10.0 108 480-599 10-117 (170)
141 2r9u_A Variable lymphocyte rec 99.3 2.8E-12 9.7E-17 114.7 10.0 107 481-599 14-120 (174)
142 3un9_A NLR family member X1; l 99.3 6.2E-13 2.1E-17 134.3 5.6 164 86-255 70-254 (372)
143 1ds9_A Outer arm dynein; leuci 99.3 2.4E-14 8.2E-19 131.7 -4.7 130 480-623 19-155 (198)
144 4gt6_A Cell surface protein; l 99.3 5.8E-11 2E-15 121.7 19.7 319 78-421 53-390 (394)
145 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 139.7 -0.7 171 408-604 71-259 (372)
146 3g39_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 111.6 11.1 105 455-573 10-115 (170)
147 2r9u_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 112.0 10.5 108 456-578 14-122 (174)
148 4gt6_A Cell surface protein; l 99.3 1.1E-10 3.6E-15 119.7 20.2 267 109-392 57-342 (394)
149 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.6E-15 116.9 9.3 104 482-598 11-117 (347)
150 4h09_A Hypothetical leucine ri 99.0 2E-08 6.7E-13 102.3 21.2 128 82-227 40-168 (379)
151 4h09_A Hypothetical leucine ri 99.0 2E-08 6.9E-13 102.2 20.8 106 82-199 63-169 (379)
152 2ra8_A Uncharacterized protein 98.9 9.2E-10 3.2E-14 110.0 7.5 136 479-619 193-341 (362)
153 2ifg_A High affinity nerve gro 98.9 1.9E-09 6.4E-14 108.5 9.7 104 457-573 11-116 (347)
154 2ra8_A Uncharacterized protein 98.8 3.4E-09 1.2E-13 105.9 4.5 136 453-595 192-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.2E-08 4.3E-13 91.8 6.0 117 84-201 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 4E-08 1.4E-12 88.5 6.7 116 109-230 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 8.9E-08 3E-12 90.5 2.2 80 532-614 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.3 2.9E-07 9.8E-12 80.5 3.4 88 88-179 61-154 (176)
159 3rw6_A Nuclear RNA export fact 98.3 8.4E-07 2.9E-11 83.8 6.0 79 139-224 169-258 (267)
160 3e4g_A ATP synthase subunit S, 98.2 9.3E-07 3.2E-11 77.2 3.5 85 360-444 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.8E-05 6.1E-10 70.5 5.0 116 84-200 37-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 6.5E-05 2.2E-09 66.9 8.5 113 110-228 36-168 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0026 8.9E-08 52.7 5.2 58 506-573 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.1 0.0093 3.2E-07 49.3 6.3 38 479-516 31-68 (130)
165 2lz0_A Uncharacterized protein 66.4 6.3 0.00022 30.2 4.1 46 151-198 7-53 (100)
166 2lz0_A Uncharacterized protein 51.2 34 0.0012 26.0 5.9 46 298-345 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-63 Score=553.52 Aligned_cols=524 Identities=28% Similarity=0.404 Sum_probs=430.6
Q ss_pred hhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhH---HHhhcCCCcEEECCCCCCCCCCCch
Q 042944 83 TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHW---LFKISSNLLALDLNSNQLAGPIPDY 159 (637)
Q Consensus 83 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---~~~~~~~L~~L~L~~n~l~~~l~~~ 159 (637)
.+..+++|++|++++|.+.+..+ ...+.++++|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+.++
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~-- 195 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGK--VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLAISGNKISGDVD-- 195 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSS--CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TTCCEEECCSSEEESCCB--
T ss_pred HHhCCCCCCEEECcCCccCCcCC--HHHhccCCCCCEEECCCCccCCcCChhhhhhccC-CCCCEEECCCCcccccCC--
Confidence 35566666666666666554432 112255667777777777776555544 3333 777777777777763333
Q ss_pred hccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccC
Q 042944 160 AFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF 239 (637)
Q Consensus 160 ~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 239 (637)
+..+++|++|++++|++...+..++++++|++|++++|.+.+..|..+..++ +|++|++++|.+....+.. .+
T Consensus 196 -~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-----~L~~L~Ls~n~l~~~~~~~-~l 268 (768)
T 3rgz_A 196 -VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT-----ELKLLNISSNQFVGPIPPL-PL 268 (768)
T ss_dssp -CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS-----SCCEEECCSSCCEESCCCC-CC
T ss_pred -cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC-----CCCEEECCCCcccCccCcc-cc
Confidence 3678888888888888877433488888899999988888888888888888 8999999988887555544 77
Q ss_pred CCccEEEccCCcCCCCCCCcCCCC-CCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhh-hcCCCCCCEE
Q 042944 240 SSLQELHLFDNKLDGSFPEKFRKP-SPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEG-LGRLSKLEFL 316 (637)
Q Consensus 240 ~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L 316 (637)
++|++|++++|.+++..|..+... ++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|.. +..+++|+.|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 889999999998887777777664 8899999999988765554 445888999999999887555544 8888999999
Q ss_pred ecCCCcCCCccchhhhcCCC-CCcEEEccCCcccccccCCCCC--CCceeEEeccCCcCCCCccccccCCCCccEEEeeC
Q 042944 317 DLFGNSLEGMITESHVSNLS-KLKYMDFSFNSLALNFSFGWLP--PFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD 393 (637)
Q Consensus 317 ~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 393 (637)
++++|.+.+..+. .+.+++ +|++|++++|.+....+..+.. +++|++|++.+|.+.+..|.++..+++|++|++++
T Consensus 349 ~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 349 DLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp ECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred eCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 9999988765555 455555 8999999999888766666655 78899999999999988899999999999999999
Q ss_pred CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcc
Q 042944 394 TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPI 470 (637)
Q Consensus 394 n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~ 470 (637)
|.+.+..+..+... ++|++|++++|.+++..+..+..+++|+.|++++|++.+..|.. +++|++|++++|++++.+
T Consensus 428 N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 428 NYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 99998888887765 89999999999999999999999999999999999999887765 689999999999999887
Q ss_pred cccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcccc----------------------------
Q 042944 471 SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTF---------------------------- 522 (637)
Q Consensus 471 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---------------------------- 522 (637)
|..... .++|++|++++|.+++.+|..+..+++|+.|++++|++++..|..
T Consensus 507 p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 507 PKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred ChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 765543 399999999999999999999999999999999999998665543
Q ss_pred ----------------------------------ccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEecc
Q 042944 523 ----------------------------------FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLR 568 (637)
Q Consensus 523 ----------------------------------~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~ 568 (637)
+.|.+|..+..+++|++||+++|.+++.+|..+. .+++|+.|+|+
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~L~Ls 664 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLG 664 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG-GCTTCCEEECC
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh-ccccCCEEeCc
Confidence 2234566677889999999999999999999988 69999999999
Q ss_pred CccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 569 SNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 569 ~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
+|++++.+|..+..+++|++||+++|++++.+|+.|..+++|++|++++|+++-
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999999999999999999999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.5e-59 Score=519.88 Aligned_cols=570 Identities=27% Similarity=0.348 Sum_probs=456.8
Q ss_pred HHHHhhccccceeeeeeccccccccccCc--------hhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCC
Q 042944 27 AELAMCRRKQVELTMYRREQVELAISPIN--------SFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASS 98 (637)
Q Consensus 27 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 98 (637)
...++|.|.|+.|...+...+...-..+. .+..++.|++..+++....... ..+..+++|++|+|++|
T Consensus 35 ~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~----~~~~~l~~L~~L~Ls~n 110 (768)
T 3rgz_A 35 SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV----SGFKCSASLTSLDLSRN 110 (768)
T ss_dssp TTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECC----CCCCCCTTCCEEECCSS
T ss_pred CCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCc----hhhccCCCCCEEECCCC
Confidence 44579999999997434433333222221 1222344555555555544322 23778888888888888
Q ss_pred CCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchh---ccCCCCCCEEEcCCC
Q 042944 99 TLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYA---FSNMTALQHLNLSLN 175 (637)
Q Consensus 99 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~---~~~l~~L~~L~L~~n 175 (637)
.+.+..+. ...++++++|++|++++|.+.+..+..+...+++|++|++++|.+++..+. . +.++++|++|++++|
T Consensus 111 ~l~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 111 SLSGPVTT-LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp EEEEEGGG-GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSS
T ss_pred cCCCcCCC-hHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCC
Confidence 87764331 126777788888888888777655554423338888888888888744443 4 678888888888888
Q ss_pred cccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCCccEEEccCCcCCC
Q 042944 176 QISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDG 254 (637)
Q Consensus 176 ~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~i~~ 254 (637)
.+..... +..+++|++|++++|.+.+..|. ++.++ +|++|++++|.+....+ .+..+++|++|++++|.+.+
T Consensus 189 ~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~-----~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 189 KISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCS-----ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp EEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCC-----SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred cccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCC-----CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence 8776432 37788888888888888766666 77777 88888888888875433 57788888888888888876
Q ss_pred CCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCC-CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhh
Q 042944 255 SFPEKFRKPSPLVILNLDGNQLWGSLPD-LSV-FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHV 332 (637)
Q Consensus 255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 332 (637)
..+.. .+++|++|++++|.+.+..+. +.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++...+
T Consensus 262 ~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH
Confidence 55544 778888888888888744443 444 58999999999999888888899999999999999998866777678
Q ss_pred cCCCCCcEEEccCCcccccccCCCCCCC-ceeEEeccCCcCCCCccccccC--CCCccEEEeeCCCCCCccchhhhhcCC
Q 042944 333 SNLSKLKYMDFSFNSLALNFSFGWLPPF-QLESIGLLHCKLGPHFPKWLQS--QKNYYFLDISDTEISDAVPSWFWDLSP 409 (637)
Q Consensus 333 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~n~i~~~~~~~~~~~~~ 409 (637)
.++++|++|++++|.+....+..+..+. +|+.|++++|.+.+..+..+.. +++|++|++++|.+.+..+..+... +
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~ 418 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-S 418 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-T
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-C
Confidence 8999999999999999877777777766 8999999999988777777766 7899999999999988888877765 8
Q ss_pred CccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeC
Q 042944 410 NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDV 486 (637)
Q Consensus 410 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 486 (637)
+|++|++++|.+++..+..+..+++|+.|++++|.+.+..|.. +++|++|++++|++++..+..... .++|++|++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L 497 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISL 497 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEEC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEc
Confidence 9999999999999999999999999999999999999877764 678999999999999877765433 399999999
Q ss_pred CCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh---------
Q 042944 487 SDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD--------- 557 (637)
Q Consensus 487 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~--------- 557 (637)
++|.+++.+|..+..+++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.+|..++.
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFS--------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCE--------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCccc--------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 999999999999999999999999999987 478888999999999999999999888876542
Q ss_pred ------------------------------------------------------------cCCCCcEEeccCccccccCC
Q 042944 558 ------------------------------------------------------------TLPKLAILSLRSNQFHGSIP 577 (637)
Q Consensus 558 ------------------------------------------------------------~l~~L~~L~L~~n~~~~~~~ 577 (637)
.+++|+.|+|++|++++.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 24678999999999999999
Q ss_pred ccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944 578 RNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT 621 (637)
Q Consensus 578 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 621 (637)
..+..+++|+.|++++|.+++.+|+.|+.+++|+.|++++|+++
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 99999999999999999999999999999999999999999997
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-53 Score=472.25 Aligned_cols=546 Identities=20% Similarity=0.170 Sum_probs=433.6
Q ss_pred HHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHh
Q 042944 58 ILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFK 137 (637)
Q Consensus 58 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 137 (637)
..++.++++++.+.... ...|..+++|++|++++|.+.++.+ ..++++++|++|++++|.++...+..+..
T Consensus 25 ~~l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP------AANFTRYSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCCC------GGGGGGGTTCSEEECCSSCCCCCCT---THHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCcC------HHHHhCCCcCcEEECCCCccCccCH---HHHhcccCcCEEECCCCccCccChhhhcc
Confidence 34667888888765433 2347888999999999999988875 45566699999999999988665555666
Q ss_pred hcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhh--cccC
Q 042944 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLN--LSGC 214 (637)
Q Consensus 138 ~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~--l~~~ 214 (637)
+ ++|++|++++|.+. .++...|.++++|++|++++|.+..+ +..+.++++|++|++++|.+.+..+..+.. ++
T Consensus 96 l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-- 171 (680)
T 1ziw_A 96 C-TNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-- 171 (680)
T ss_dssp C-TTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC--
T ss_pred C-CCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc--
Confidence 6 99999999999998 77765789999999999999998885 567888999999999999998777776653 35
Q ss_pred CCCcccEEEcCCCCCCCCcCC-ccc---------------------------CCCccEEEccCCcCCCCCCCcCCCCCC-
Q 042944 215 SKNSLEILKLGGNKLTGSLPD-ITE---------------------------FSSLQELHLFDNKLDGSFPEKFRKPSP- 265 (637)
Q Consensus 215 ~~~~L~~L~l~~n~~~~~~~~-~~~---------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~- 265 (637)
+|++|++++|.+....+. +.. .++|++|++++|.+.+..+..+..++.
T Consensus 172 ---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 172 ---SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248 (680)
T ss_dssp ---EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred ---cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence 899999999988765443 222 256888888888888777788877754
Q ss_pred -CcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCc--------cchhhhcCC
Q 042944 266 -LVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM--------ITESHVSNL 335 (637)
Q Consensus 266 -L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l 335 (637)
|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|..... +....+..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 99999999998876654 44589999999999999888888889999999999988754321 122357788
Q ss_pred CCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc--cccccC--CCCccEEEeeCCCCCCccchhhhhcCCCc
Q 042944 336 SKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF--PKWLQS--QKNYYFLDISDTEISDAVPSWFWDLSPNL 411 (637)
Q Consensus 336 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~--~~~L~~L~l~~n~i~~~~~~~~~~~~~~L 411 (637)
++|++|++++|.+....+..+..+++|++|++++|.+.... ...+.. .++|+.|++++|.+.+..+..+... ++|
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L 407 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-GHL 407 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC-TTC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC-CCC
Confidence 99999999999998888888888999999999998753321 122222 3689999999999988777666554 899
Q ss_pred cEEECCCCcCCCccc-ccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccC--cccccccccCCCccEEe
Q 042944 412 YYLNLSHNHLEGTVL-DLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSG--PISSLCSISGEYFSYLD 485 (637)
Q Consensus 412 ~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~ 485 (637)
++|++++|.+++..+ ..+..+++|+.|++++|++.+..+.. +++|++|++++|.+.. ..+.. +...++|+.|+
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~ 486 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILD 486 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cccCCCCCEEE
Confidence 999999999976544 67888999999999999987665443 6789999999998863 23322 22338999999
Q ss_pred CCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944 486 VSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565 (637)
Q Consensus 486 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L 565 (637)
+++|.+++..+..+..+++|++|++++|.+++.....+.+..+..+..+++|++|++++|.++ .+|...+..+++|+.|
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKII 565 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCccee
Confidence 999999987888899999999999999998854322111112234788999999999999998 8887766689999999
Q ss_pred eccCccccccCCccccCCCCCcEeeCCCCccccccccccc-ccccceeeccCCCeeEE
Q 042944 566 SLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN-NLTAMVEKASSNSTITH 622 (637)
Q Consensus 566 ~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~l~l~~n~l~~ 622 (637)
+|++|++++..+..|..+++|+.|++++|++++..|..|. .+++|+++++++|++..
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 9999999965666678999999999999999988887787 89999999999999854
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-52 Score=462.01 Aligned_cols=517 Identities=23% Similarity=0.246 Sum_probs=426.0
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL 167 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L 167 (637)
+++++|++++|.+.++.+ ..+.++++|++|++++|.+.+..+..+.++ ++|++|++++|.++ .++..+|+++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccC-ccChhhhccCCCC
Confidence 689999999999999875 456777999999999999998888878777 99999999999998 8888789999999
Q ss_pred CEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC---cccCCCcc
Q 042944 168 QHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD---ITEFSSLQ 243 (637)
Q Consensus 168 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~L~ 243 (637)
++|++++|++..++ ..|.++++|++|++++|.+.+..+..+..++ +|++|++++|.+....+. ...+++|+
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-----NLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-----TCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc-----cCCEEEccCCcccccCHHHhhcccccccc
Confidence 99999999999975 6799999999999999999988888888888 999999999999876553 23557999
Q ss_pred EEEccCCcCCCCCCCcCCCC---------------------------CCCcEEEcCCCCCCCCCCCCCC-C--CCCCEEE
Q 042944 244 ELHLFDNKLDGSFPEKFRKP---------------------------SPLVILNLDGNQLWGSLPDLSV-F--PFLTRLD 293 (637)
Q Consensus 244 ~L~l~~n~i~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~-~--~~L~~L~ 293 (637)
+|++++|.+++..+..+..+ ++|+.|++++|.+.+..+.... + ++|++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 99999999988777766554 4567777777777665544333 4 4599999
Q ss_pred ccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc---------ccccCCCCCCCceeE
Q 042944 294 VSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA---------LNFSFGWLPPFQLES 364 (637)
Q Consensus 294 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~~~~~L~~ 364 (637)
+++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.++++|+.|++++|... ......+..+++|++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 99999988777888899999999999999887444 47888999999999876443 222336778899999
Q ss_pred EeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc--chhhhhc-CCCccEEECCCCcCCCcccccccCCCCCCeEeCC
Q 042944 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV--PSWFWDL-SPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441 (637)
Q Consensus 365 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 441 (637)
|++++|.+.+..+.++..+++|++|++++|.+.... ...+... .++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 999999999888888999999999999998754322 2222221 2589999999999998888889999999999999
Q ss_pred CCcCcCCCC----CCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc--ccCchhhhccCCCcEEeccCccC
Q 042944 442 SNDFEGPVP----PVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS--GELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 442 ~n~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+|.+.+..+ ..+++|++|++++|++.+..+..+. ..++|+.|++++|.+. +..|..+..+++|+.|++++|.+
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 999876544 2378999999999998766554433 3399999999999886 46788899999999999999998
Q ss_pred CCCccccccccCCccccCCCCCcEEEcCCCcccccC-------ChhhhhcCCCCcEEeccCccccccCCccccCCCCCcE
Q 042944 516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI-------PAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQL 588 (637)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-------~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 588 (637)
++ ..+..+..+++|++|++++|.+++.. |...+..+++|+.|+|++|+++...+..|..+++|+.
T Consensus 493 ~~--------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 493 AN--------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp CC--------CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred Cc--------CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 83 22345788999999999999997321 1112447899999999999999433446899999999
Q ss_pred eeCCCCcccccccccccccccceeeccCCCeeEEEE
Q 042944 589 LDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIY 624 (637)
Q Consensus 589 L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 624 (637)
|++++|.+++..+..|..+++|++|++++|+|+.++
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 999999999777777899999999999999998775
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-52 Score=458.21 Aligned_cols=491 Identities=19% Similarity=0.167 Sum_probs=339.3
Q ss_pred CccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEE
Q 042944 116 SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLH 194 (637)
Q Consensus 116 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~ 194 (637)
++++|++++|.+++..+..+.++ ++|++|++++|.+. .+...+|.++++|++|++++|++..+ |..|+++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 34444444444444433334333 44444444444444 33222444444444444444444442 33444444444444
Q ss_pred cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc--EEEc
Q 042944 195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV--ILNL 271 (637)
Q Consensus 195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~--~L~l 271 (637)
+++|.+.+..+..+..++ +|++|++++|.+... .+.+..+++|++|++++|.+++..+..+..+++|+ .+++
T Consensus 112 L~~n~i~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQK-----TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CTTSCCSCGGGSCCTTCT-----TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccccCcccCCcchhccCC-----cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 444444433334444444 444444444444431 12333344455555554444443344444444444 4444
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEccCCc--------------------------CCCCChhhhcCCC--CCCEEecCCCcC
Q 042944 272 DGNQLWGSLPDLSVFPFLTRLDVSDSR--------------------------LNGTVSEGLGRLS--KLEFLDLFGNSL 323 (637)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~L~l~~n~--------------------------~~~~~~~~l~~l~--~L~~L~l~~n~~ 323 (637)
++|.+.+..+..+....|++|++++|. .....+..+..+. +|+.|++++|.+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 444444444444444444444444442 0111222233322 688999999998
Q ss_pred CCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchh
Q 042944 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW 403 (637)
Q Consensus 324 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 403 (637)
.+. +...+..+++|++|++++|.++ ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..
T Consensus 267 ~~~-~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 267 FNI-SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp SSC-CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred Ccc-CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 874 4447888999999999999888 45556788889999999999988877888899999999999999888666555
Q ss_pred hhhcCCCccEEECCCCcCCCcc--cccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccC
Q 042944 404 FWDLSPNLYYLNLSHNHLEGTV--LDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISG 478 (637)
Q Consensus 404 ~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~ 478 (637)
....+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+.. +++|++|++++|++.+..+.......
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 4444589999999999998765 667889999999999999988766544 67899999999999877665444455
Q ss_pred CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944 479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~ 558 (637)
++|++|++++|.+++..+..+..+++|++|++++|++.+... ..+..+..+++|++|++++|.+++..|..+. .
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~ 498 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-S 498 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTSCCCEECTTTTT-T
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCCccCccChhhhc-c
Confidence 999999999999998888999999999999999999874211 2235688899999999999999866666665 7
Q ss_pred CCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 559 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
+++|++|+|++|++++..|..+..+++| .|++++|.+++..|..|..+++|+++++++|++..
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999999999998899999999999 99999999999889999999999999999999964
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.2e-51 Score=445.99 Aligned_cols=505 Identities=20% Similarity=0.217 Sum_probs=361.8
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL 167 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L 167 (637)
+++++|++++|.++++.+ ..+.++++|++|++++|.+++..+..+.++ ++|++|++++|.++ .+++.+|+++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~-~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQ-SFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC-CCCTTSSTTCTTC
T ss_pred CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCccc-ccChhhcCCcccC
Confidence 566677777766666543 345556667777777766665555555555 66777777776666 4433366667777
Q ss_pred CEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCC---
Q 042944 168 QHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSS--- 241 (637)
Q Consensus 168 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~--- 241 (637)
++|++++|++..++ ..++++++|++|++++|.+.+ ..|..+++++ +|++|++++|.+....+ .+..+.+
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-----NLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-----TCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-----CCCEEEccCCcceecChhhhhhhhcccc
Confidence 77777777666654 456666677777777666654 3466666666 67777776666664333 2333332
Q ss_pred -ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCC--CCCCCCCCCCCCEEEccCCcCCC------CChhhhcCCC-
Q 042944 242 -LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWG--SLPDLSVFPFLTRLDVSDSRLNG------TVSEGLGRLS- 311 (637)
Q Consensus 242 -L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~------~~~~~l~~l~- 311 (637)
+++|++++|.+++..+..+... +|+.|++++|.+.. ....+..++.++.+++..+.+.. .....+..+.
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 3366666666665444444443 66666666665531 11123335555555553332221 1111122222
Q ss_pred -CCCEEec-CCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEE
Q 042944 312 -KLEFLDL-FGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFL 389 (637)
Q Consensus 312 -~L~~L~l-~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 389 (637)
.++.+++ ..+.+.+..+. +..+++|+.|+++++.+.... .+..+++|++|++.+|.+ +.+|. + .+++|+.|
T Consensus 261 l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L 333 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSL 333 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEE
T ss_pred ccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-ccccc-C-CCCcccee
Confidence 2445555 55566654443 788899999999999986544 777888999999999999 56664 4 89999999
Q ss_pred EeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcc--cccccCCCCCCeEeCCCCcCcCCCCC--CCCCccEEEccccc
Q 042944 390 DISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTV--LDLSLNYAGYPGIDLSSNDFEGPVPP--VPGNVTSLNLSNNK 465 (637)
Q Consensus 390 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~L~~n~ 465 (637)
++++|...... .+. .+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+.... .+++|++|++++|+
T Consensus 334 ~l~~n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 334 TLTMNKGSISF--KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEESCSSCEEC--CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred eccCCcCccch--hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence 99999655433 222 3589999999999988663 67788999999999999998765422 36899999999999
Q ss_pred ccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCC
Q 042944 466 FSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDN 545 (637)
Q Consensus 466 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 545 (637)
+.+..+.......++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+|..+..+++|++|++++|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-------TLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTS
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc-------chHHhhccCCCCCEEECCCC
Confidence 99877644444459999999999999988999999999999999999998731 25778889999999999999
Q ss_pred cccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccc-cceeeccCCCeeEE
Q 042944 546 KFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT-AMVEKASSNSTITH 622 (637)
Q Consensus 546 ~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~l~l~~n~l~~ 622 (637)
.+++..|..+. .+++|++|+|++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+++++++|++..
T Consensus 484 ~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 484 QLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 99866666665 7999999999999999888999999999999999999998 7888899997 59999999999864
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-49 Score=434.41 Aligned_cols=488 Identities=21% Similarity=0.187 Sum_probs=372.6
Q ss_pred HHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhc
Q 042944 60 KLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS 139 (637)
Q Consensus 60 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 139 (637)
++.+++++|....+. ...|..+++|++|++++|.+..+.+ .+|.++++|++|++++|.+.+..+..+..+
T Consensus 35 l~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l- 104 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQ------NTTFSRLINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLVLTANPLIFMAETALSGP- 104 (606)
T ss_dssp CCEEECTTCCCSEEC------TTTSTTCTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCSEECTTTTSSC-
T ss_pred CcEEEccCCccCcCC------hhHhccCccceEEECCCCccceeCh---hhccCccccCeeeCCCCcccccChhhhccc-
Confidence 567999998776542 2457899999999999999988765 667788999999999999998777777777
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS 218 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~ 218 (637)
++|++|++++|.++ .++...+.++++|++|++++|++..++ ..+.++++|++|++++|.+.+..+..+..+. +
T Consensus 105 ~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~ 178 (606)
T 3t6q_A 105 KALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-----Q 178 (606)
T ss_dssp TTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-----T
T ss_pred ccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-----c
Confidence 99999999999998 775557999999999999999999862 3455599999999999999988889999998 8
Q ss_pred cc--EEEcCCCCCCCCcCCcccCCCccEEEccCCcCC--------------------------CCCCCcCCCCC--CCcE
Q 042944 219 LE--ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD--------------------------GSFPEKFRKPS--PLVI 268 (637)
Q Consensus 219 L~--~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~--------------------------~~~~~~l~~l~--~L~~ 268 (637)
|+ .|++++|.+...++.......|++|++++|... ...+..+..+. +|+.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 98 899999999987777777778999998877410 11112222222 7899
Q ss_pred EEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc
Q 042944 269 LNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS 347 (637)
Q Consensus 269 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 347 (637)
+++++|.+....+. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCC
Confidence 99999999887776 445999999999999998 667778999999999999999987544 478899999999999999
Q ss_pred ccccc-cCCCCCCCceeEEeccCCcCCCCc--cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCc
Q 042944 348 LALNF-SFGWLPPFQLESIGLLHCKLGPHF--PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424 (637)
Q Consensus 348 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 424 (637)
+.... ...+..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++.
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVK 415 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECC
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCc
Confidence 87544 445888999999999999988765 6778999999999999999988777766654 8999999999999876
Q ss_pred cc-ccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhh
Q 042944 425 VL-DLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL 500 (637)
Q Consensus 425 ~~-~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 500 (637)
.+ ..+..+++|+.|++++|.+.+..+.. +++|++|++++|++.+... ..+..+.
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------~~~~~~~ 473 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----------------------QKTNSLQ 473 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----------------------CSSCGGG
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----------------------ccchhhc
Confidence 55 44789999999999999998766554 4455555555555543110 1123455
Q ss_pred ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccc
Q 042944 501 RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL 580 (637)
Q Consensus 501 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l 580 (637)
.+++|+.|++++|.+++ ..|..+..+++|++|++++|++++..|..+. .++.| .|++++|++++..|..+
T Consensus 474 ~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSS--------IDQHAFTSLKMMNHVDLSHNRLTSSSIEALS-HLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp GCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCCGGGGGGGT-TCCSC-EEECCSSCCCCCCGGGH
T ss_pred cCCCccEEECCCCccCc--------cChhhhccccCCCEEECCCCccCcCChhHhC-ccccc-EEECcCCcccccCHhhc
Confidence 56666666666666552 2234455566666666666666544444444 46666 66666666665555555
Q ss_pred cCCCCCcEeeCCCCcccc
Q 042944 581 CRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 581 ~~l~~L~~L~ls~n~l~~ 598 (637)
..+++|+.|++++|++.+
T Consensus 544 ~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 544 PILSQQRTINLRQNPLDC 561 (606)
T ss_dssp HHHHTSSEEECTTCCEEC
T ss_pred ccCCCCCEEeCCCCCccc
Confidence 666666666666666654
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-48 Score=438.78 Aligned_cols=510 Identities=20% Similarity=0.188 Sum_probs=408.2
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh-hhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA-YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM 164 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l 164 (637)
..+++++|+|++|.++.+.+ ..+.++++|++|++++|...... +..+.++ ++|++|+|++|.+. .++..+|.++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~-~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIY-FLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCC-EECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCc-ccCHhHccCC
Confidence 34789999999999998765 66778899999999999654444 5666666 99999999999998 5544489999
Q ss_pred CCCCEEEcCCCcccc-hhhh--cCCCCCCcEEEcCCCcCCCCch-hHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccC
Q 042944 165 TALQHLNLSLNQISA-ISKS--FGNMCGLKTLHLFDNNLTGQLP-ELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEF 239 (637)
Q Consensus 165 ~~L~~L~L~~n~l~~-l~~~--~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~ 239 (637)
++|++|++++|.+.. ++.. +.++++|++|++++|.+.+..+ ..|++++ +|++|++++|.+....+ .+..+
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-----~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-----SLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-----SCCEEEEESSCCCCCCSGGGHHH
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-----CCCEEECCCCcCCeeCHHHcccc
Confidence 999999999999987 4444 8999999999999999986654 6788898 99999999999886544 45555
Q ss_pred --CCccEEEccCCcCCCCCCCcCCCCCC------CcEEEcCCCCCCCCCCCC----CCCCCCCEEEccCCc---------
Q 042944 240 --SSLQELHLFDNKLDGSFPEKFRKPSP------LVILNLDGNQLWGSLPDL----SVFPFLTRLDVSDSR--------- 298 (637)
Q Consensus 240 --~~L~~L~l~~n~i~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~n~--------- 298 (637)
++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+.. ....+++.+.++.+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 79999999999998877777666655 999999999876544332 224678888877432
Q ss_pred CCCCChhhhcCC--CCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc
Q 042944 299 LNGTVSEGLGRL--SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF 376 (637)
Q Consensus 299 ~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 376 (637)
+.+.....+.++ ++|+.|++++|.+.+.. ...+..+++|+.|++++|.+....+..+..+++|++|++++|.+....
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 222233344443 68999999999988644 347889999999999999999888888999999999999999998888
Q ss_pred cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCc
Q 042944 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNV 456 (637)
Q Consensus 377 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L 456 (637)
+..+..+++|+.|++++|.+....+..+.. +++|++|++++|.+++.. .+++|+.+++++|++.. .|....++
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~-l~~~~~~l 403 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKF-LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVT-LPKINLTA 403 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCS-CCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCC-CCCCCTTC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcC-CCCCCEEECCCCCCCccc-----CCCCcchhccCCCCccc-cccccccc
Confidence 889999999999999999998776665544 489999999999987532 37889999999999984 45557789
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCch-hhhccCCCcEEeccCccCCCCccccccccCCccccCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD-CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN 535 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~ 535 (637)
+.|++++|++.+..........++|+.|++++|.+++..+. .+..+++|+.|++++|.+....+. +..+..+..++
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~l~ 480 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET---ELCWDVFEGLS 480 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS---CCCSSCSSCBC
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc---ccchhhhcCcc
Confidence 99999999998765443333459999999999999865433 456689999999999998743221 23455688899
Q ss_pred CCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944 536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS 615 (637)
Q Consensus 536 ~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l 615 (637)
+|++|++++|.++ .++...+..+++|+.|+|++|++++..+..+. ++|+.|++++|++++..|..|. +|+.+++
T Consensus 481 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l 554 (844)
T 3j0a_A 481 HLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI 554 (844)
T ss_dssp CEECCCCCHHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred cccEEECCCCccc-ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEe
Confidence 9999999999998 55555444799999999999999965555554 8999999999999988887764 7889999
Q ss_pred CCCeeEE
Q 042944 616 SNSTITH 622 (637)
Q Consensus 616 ~~n~l~~ 622 (637)
++|++..
T Consensus 555 ~~Np~~C 561 (844)
T 3j0a_A 555 THNKFIC 561 (844)
T ss_dssp EEECCCC
T ss_pred cCCCccc
Confidence 9998753
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-47 Score=419.20 Aligned_cols=505 Identities=17% Similarity=0.119 Sum_probs=422.7
Q ss_pred CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944 89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ 168 (637)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 168 (637)
.-++++.+++.++.++ ..+. +++++|++++|.+++..+..+.++ ++|++|++++|.++ .++..+|.++++|+
T Consensus 12 ~~~~~~c~~~~l~~ip----~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVP----DDIP--SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIE-TIEDKAWHGLHHLS 83 (606)
T ss_dssp TTTEEECTTSCCSSCC----TTSC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred CCCceEccCCCcccCC----CCCC--CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCccc-ccCHHHhhchhhcC
Confidence 4568999999999885 3332 789999999999998777777777 99999999999998 77665899999999
Q ss_pred EEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCCCccEE
Q 042944 169 HLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQEL 245 (637)
Q Consensus 169 ~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L 245 (637)
+|++++|+++.+ |..|+++++|++|++++|.+.+..+..+++++ +|++|++++|.+.. .+..+..+++|++|
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-----TCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC-----CCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 999999999997 88999999999999999999877778899998 99999999999985 45668999999999
Q ss_pred EccCCcCCCCCCCcCCCCCCCc----EEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCC-CCChhhhcCCCCCCEEecCC
Q 042944 246 HLFDNKLDGSFPEKFRKPSPLV----ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN-GTVSEGLGRLSKLEFLDLFG 320 (637)
Q Consensus 246 ~l~~n~i~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~ 320 (637)
++++|.+++..+..+..+++|+ ++++++|.+....+......+|++|++++|.+. +..+..+..++.++.+++..
T Consensus 159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 9999999988777777766554 899999999988877777679999999999886 35677788999999888765
Q ss_pred CcCCCc-----cchhhhcCCC--CCcEEEc-cCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEee
Q 042944 321 NSLEGM-----ITESHVSNLS--KLKYMDF-SFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDIS 392 (637)
Q Consensus 321 n~~~~~-----~~~~~~~~l~--~L~~L~l-~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 392 (637)
+.+... .....+..+. +++.+++ ..+.+....+. +..+++|+.+++.+|.+.. ++ ++..+++|+.|+++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSII 315 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEE
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcc
Confidence 443321 1122333333 4566777 55666666555 8889999999999999864 44 78999999999999
Q ss_pred CCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC--CC---CCCCccEEEccccccc
Q 042944 393 DTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV--PP---VPGNVTSLNLSNNKFS 467 (637)
Q Consensus 393 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~L~~L~L~~n~l~ 467 (637)
+|.+. ..+. + .+++|++|++++|...+.. .+..+++|+.|++++|.+.+.. +. .+++|++|++++|++.
T Consensus 316 ~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 316 RCQLK-QFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp SCCCS-SCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred cccCc-cccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 99994 4553 3 4589999999999665433 5678999999999999988653 22 3789999999999988
Q ss_pred CcccccccccCCCccEEeCCCCCCcccCc-hhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCc
Q 042944 468 GPISSLCSISGEYFSYLDVSDNLLSGELP-DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK 546 (637)
Q Consensus 468 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~ 546 (637)
+....+ ...++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 390 ~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 390 IMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI--------DFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE--------CCTTTTTTCTTCCEEECTTCE
T ss_pred cchhhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc--------cchhhhcCCCCCCEEECCCCc
Confidence 755322 233999999999999997776 689999999999999999873 456778899999999999999
Q ss_pred cccc-CChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEEEE
Q 042944 547 FSGT-IPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYV 625 (637)
Q Consensus 547 l~~~-~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~ 625 (637)
+++. +|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|++++|+|+.++.
T Consensus 460 l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp EGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred CCCcchHHhhc-cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence 9863 566555 79999999999999998888999999999999999999999999999999999999999999998875
Q ss_pred E
Q 042944 626 Y 626 (637)
Q Consensus 626 ~ 626 (637)
.
T Consensus 539 ~ 539 (606)
T 3vq2_A 539 I 539 (606)
T ss_dssp C
T ss_pred h
Confidence 3
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.1e-46 Score=419.54 Aligned_cols=501 Identities=21% Similarity=0.193 Sum_probs=411.7
Q ss_pred HHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCC-CCcccccccCCCCCccEEECCCCCCCchhhhHHH
Q 042944 58 ILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLS-INRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLF 136 (637)
Q Consensus 58 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 136 (637)
..++.+++++|...... ...|..+++|++|++++|.... +.+ .++.++++|++|+|++|.+.+..+..+.
T Consensus 24 ~~l~~LdLs~N~i~~i~------~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVT------ASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp TTCCEEEEESCCCCEEC------SSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCcCEEECCCCcCCccC------hhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 35678999998765432 2347899999999999995443 333 6678889999999999999988788787
Q ss_pred hhcCCCcEEECCCCCCCCCCCc-hhccCCCCCCEEEcCCCcccch--hhhcCCCCCCcEEEcCCCcCCCCchhHhhhc--
Q 042944 137 KISSNLLALDLNSNQLAGPIPD-YAFSNMTALQHLNLSLNQISAI--SKSFGNMCGLKTLHLFDNNLTGQLPELFLNL-- 211 (637)
Q Consensus 137 ~~~~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~~L~L~~n~l~~l--~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-- 211 (637)
.+ ++|++|++++|.+.+.++. ..+.++++|++|++++|.+..+ +..|+++++|++|++++|.+.+..+..+..+
T Consensus 95 ~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 77 9999999999999855554 3489999999999999999885 3579999999999999999998888888877
Q ss_pred ccCCCCcccEEEcCCCCCCCCcC-CcccCC------CccEEEccCCcCCCCCCCcCCCC---CCCcEEEcCCCCCC----
Q 042944 212 SGCSKNSLEILKLGGNKLTGSLP-DITEFS------SLQELHLFDNKLDGSFPEKFRKP---SPLVILNLDGNQLW---- 277 (637)
Q Consensus 212 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~------~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~l~~~~~~---- 277 (637)
+ +|+.|++++|.+....+ .+..++ .|++|++++|.+++..+..+... +.++.+.+..+...
T Consensus 174 ~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 174 K-----TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp C-----SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred C-----ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 5 99999999999886433 344444 49999999999887666665433 67888888743322
Q ss_pred -----CCCC-CCCC--CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944 278 -----GSLP-DLSV--FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 278 -----~~~~-~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
.... .+.+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCS
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCC
Confidence 1111 1222 4789999999999998888889999999999999999987544 47899999999999999999
Q ss_pred ccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccc
Q 042944 350 LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLS 429 (637)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 429 (637)
...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+... +++|++|++++|+++.. +.
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l-~~-- 398 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTL-PK-- 398 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCC-CC--
T ss_pred ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCcccc-cc--
Confidence 8888899999999999999999988888889999999999999999986433 48999999999999844 32
Q ss_pred cCCCCCCeEeCCCCcCcCCCCC----CCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc-----ccCchhhh
Q 042944 430 LNYAGYPGIDLSSNDFEGPVPP----VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS-----GELPDCLL 500 (637)
Q Consensus 430 ~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~ 500 (637)
....++.+++++|.+.+.... .+++|++|++++|++++..+.......++|+.|++++|.++ +..+..|.
T Consensus 399 -~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 399 -INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp -CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred -cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 256899999999999875432 47899999999999987655544444599999999999987 34456788
Q ss_pred ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccc
Q 042944 501 RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL 580 (637)
Q Consensus 501 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l 580 (637)
++++|+.|++++|.+++ ..|..+..+++|++|++++|+++ .+|...+ .++|+.|+|++|++++..|..+
T Consensus 478 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~--~~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNS--------LPPGVFSHLTALRGLSLNSNRLT-VLSHNDL--PANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp CBCCEECCCCCHHHHTT--------CCTTSSSSCCSCSEEEEESCCCS-SCCCCCC--CSCCCEEEEEEECCCCCCSCCC
T ss_pred CcccccEEECCCCcccc--------cChhHccchhhhheeECCCCCCC-ccChhhh--hccccEEECCCCcCCCCChhHh
Confidence 99999999999999883 34456789999999999999998 5665555 2899999999999998888665
Q ss_pred cCCCCCcEeeCCCCcccc
Q 042944 581 CRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 581 ~~l~~L~~L~ls~n~l~~ 598 (637)
.+|+.|++++|++..
T Consensus 547 ---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 547 ---VSLSVLDITHNKFIC 561 (844)
T ss_dssp ---SSCCEEEEEEECCCC
T ss_pred ---CCcCEEEecCCCccc
Confidence 588999999999875
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-46 Score=403.63 Aligned_cols=484 Identities=21% Similarity=0.225 Sum_probs=233.8
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL 167 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L 167 (637)
+++++|++++|.++++.+ ..+..+++|++|++++|.+.+..+..+.++ ++|++|++++|.++ .++..+|.++++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQ-SLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC-EECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccCh---hHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCC-ccCHhhhcCcccc
Confidence 356666666666665543 344555666666666666665444444444 66666666666665 4544456666666
Q ss_pred CEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCCc--
Q 042944 168 QHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSL-- 242 (637)
Q Consensus 168 ~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~L-- 242 (637)
++|++++|+++.++. .++++++|++|++++|.+.+ ..|..+++++ +|++|++++|.+....+ .+..+++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC-----CCCEEeCcCCccceecHHHccchhccch
Confidence 666666666666543 46666666666666666654 2455666665 66666666666554322 24444444
Q ss_pred --cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCC--CCCCCCCCCCCEEEccCCcCC------CCChhhhcCCCC
Q 042944 243 --QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS--LPDLSVFPFLTRLDVSDSRLN------GTVSEGLGRLSK 312 (637)
Q Consensus 243 --~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~------~~~~~~l~~l~~ 312 (637)
+.+++++|.+.+..+..+... +|+.+++++|..... ...+..++.++...+....+. ......+..+++
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 556666666555545444443 455665555532110 001112333333322211110 011111111111
Q ss_pred --CCEEecCCC-cCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEE
Q 042944 313 --LEFLDLFGN-SLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFL 389 (637)
Q Consensus 313 --L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 389 (637)
++.++++++ .+.+..+ ..+..+++|++|++++|.+.. .+..+... +|++|++.+|.+. .+|. ..+++|+.|
T Consensus 257 l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L 330 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRL 330 (570)
T ss_dssp SEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEE
T ss_pred cchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEE
Confidence 233444443 2222222 234455555555555555542 22233333 5555555555554 2222 244555555
Q ss_pred EeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcc--cccccCCCCCCeEeCCCCcCcCCCCC--CCCCccEEEccccc
Q 042944 390 DISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTV--LDLSLNYAGYPGIDLSSNDFEGPVPP--VPGNVTSLNLSNNK 465 (637)
Q Consensus 390 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~L~~n~ 465 (637)
++++|.+....+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+.+..+. .+++|++|++++|+
T Consensus 331 ~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 331 TFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred eCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc
Confidence 5555554443332 22355555555555554332 33444555555555555554433221 23455555555555
Q ss_pred ccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCC
Q 042944 466 FSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDN 545 (637)
Q Consensus 466 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n 545 (637)
+.+..+...+...++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ +.+|..+..+++|++|++++|
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------GEECSCCTTCTTCCEEECTTS
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc-------ccchhhhhcccCCCEEECCCC
Confidence 5444332222222455555555555554444445555555555555554431 123444445555555555555
Q ss_pred cccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 546 KFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 546 ~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
.+++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 481 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 481 QLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCChhhhh-cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 55433333333 345555555555555544444444555555555555555443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=394.08 Aligned_cols=483 Identities=18% Similarity=0.199 Sum_probs=387.5
Q ss_pred HHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhh
Q 042944 59 LKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138 (637)
Q Consensus 59 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~ 138 (637)
.++.++++++...... ...|..+++|++|++++|.+.++.+ ..+.++++|++|++++|.++...+..+..+
T Consensus 29 ~l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 29 STKNLDLSFNPLRHLG------SYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCCEEECCSCCCCEEC------TTTTTTCSSCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccEEEccCCccCccC------hhHhhCCCCceEEECCCCcCCccCc---ccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 3567899998765443 2357899999999999999998764 567788999999999999997777777776
Q ss_pred cCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCC
Q 042944 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK 216 (637)
Q Consensus 139 ~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~ 216 (637)
++|++|++++|.+. .++...++++++|++|++++|.+.. +|..|+++++|++|++++|.+.+..+..++.+.
T Consensus 100 -~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---- 173 (570)
T 2z63_A 100 -SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH---- 173 (570)
T ss_dssp -TTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH----
T ss_pred -cccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh----
Confidence 99999999999998 7776679999999999999999987 689999999999999999999988888899888
Q ss_pred Ccc----cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCCCC------CCCC-CCC
Q 042944 217 NSL----EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLW------GSLP-DLS 284 (637)
Q Consensus 217 ~~L----~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~------~~~~-~~~ 284 (637)
+| +.+++++|.+....+......+|++|++++|.... ..+..+..++.++...+...... .... .+.
T Consensus 174 -~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 174 -QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp -TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred -ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 88 89999999998776665555689999999985432 22334556666666554322111 1111 111
Q ss_pred CCC--CCCEEEccCC-cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCc
Q 042944 285 VFP--FLTRLDVSDS-RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQ 361 (637)
Q Consensus 285 ~~~--~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 361 (637)
.++ .++.++++++ .+.+..+..+..+++|+.|++++|.+.+ .+. .+..+ +|++|++++|.+..... ..+++
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~-~L~~L~l~~n~~~~l~~---~~l~~ 326 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF-GWQHLELVNCKFGQFPT---LKLKS 326 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC-CCSEEEEESCBCSSCCB---CBCSS
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC-CccEEeeccCcccccCc---ccccc
Confidence 222 3567777777 6666777888899999999999999885 333 46667 99999999999883332 46788
Q ss_pred eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc--chhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEe
Q 042944 362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV--PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID 439 (637)
Q Consensus 362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 439 (637)
|+.+++.+|.+....+. ..+++|++|++++|.+.... +..+.. +++|++|++++|.+++..+. +..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 402 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402 (570)
T ss_dssp CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence 99999999998766554 78899999999999988754 455555 48999999999999876665 88999999999
Q ss_pred CCCCcCcCCCC----CCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc-ccCchhhhccCCCcEEeccCcc
Q 042944 440 LSSNDFEGPVP----PVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS-GELPDCLLRWQALAVLNLANNN 514 (637)
Q Consensus 440 l~~n~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 514 (637)
+++|.+.+..+ ..+++|++|++++|++.+..+.... ..++|++|++++|.++ +.+|..+..+++|+.|++++|+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 99999987654 2378999999999999876665433 2399999999999997 4688899999999999999999
Q ss_pred CCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCC
Q 042944 515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP 577 (637)
Q Consensus 515 l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~ 577 (637)
+++ ..|..+..+++|++|++++|.++ .++...+..+++|+.|++++|+++...|
T Consensus 482 l~~--------~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 482 LEQ--------LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCE--------ECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccc--------CChhhhhcccCCCEEeCCCCcCC-CCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 883 34677889999999999999998 4554444479999999999999986554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-44 Score=391.97 Aligned_cols=480 Identities=19% Similarity=0.220 Sum_probs=299.5
Q ss_pred CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCC
Q 042944 87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTA 166 (637)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~ 166 (637)
|+.....+.+++.++.++ ..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+. .++..+|.++++
T Consensus 4 C~~~~~c~~~~~~l~~ip----~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~-~~~~~~~~~l~~ 75 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIP----SGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRIN-TIEGDAFYSLGS 75 (549)
T ss_dssp ECTTSEEECTTSCCSSCC----SCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred CCCCceEECCCCcccccc----ccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcC-ccChhhcccccc
Confidence 445555788888888875 3332 789999999999987777767776 99999999999998 666558899999
Q ss_pred CCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCC-chhHhhhcccCCCCcccEEEcCCCC-CCCCc-CCcccCCCc
Q 042944 167 LQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQ-LPELFLNLSGCSKNSLEILKLGGNK-LTGSL-PDITEFSSL 242 (637)
Q Consensus 167 L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~-~~~~~~~~L 242 (637)
|++|++++|+++.++. .|+++++|++|++++|.+.+. .+..+..++ +|++|++++|. +...+ ..+..+++|
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----NLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-----CccEEECCCCccccccCHhhhhccccc
Confidence 9999999999998654 589999999999999988753 456778887 99999999988 44333 257888899
Q ss_pred cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCC---hhhhcCCCCCCEEec
Q 042944 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS-VFPFLTRLDVSDSRLNGTV---SEGLGRLSKLEFLDL 318 (637)
Q Consensus 243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l 318 (637)
++|++++|.+++..+..+..+++|++|+++.|.+......+. .+++|++|++++|.+.+.. ......+++|+.|++
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 999999999888788888889999999999888764433332 3788999999999887632 122345778889999
Q ss_pred CCCcCCCccch---hhhcCCCCCcEEEccCCccccccc------CCCCCCCceeEEeccCCcCCCCc-----cccccCCC
Q 042944 319 FGNSLEGMITE---SHVSNLSKLKYMDFSFNSLALNFS------FGWLPPFQLESIGLLHCKLGPHF-----PKWLQSQK 384 (637)
Q Consensus 319 ~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~ 384 (637)
++|.+.+..+. ..+..+++|+.+++++|.+..... ..+..+.+++.+.+.++.+.... +......+
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 88887654332 234567888888888887764321 12234455666666665543211 11122234
Q ss_pred CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccc---ccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEc
Q 042944 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVL---DLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL 461 (637)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L 461 (637)
+|+.|++++|.+.. .|..+...+++|++|++++|.+++..+ ..+..+++|+.|++++|++++.
T Consensus 311 ~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------- 376 (549)
T 2z81_A 311 KVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM------------- 376 (549)
T ss_dssp TCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH-------------
T ss_pred cceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc-------------
Confidence 56666666666553 333333333566666666666654432 2234455555555555555432
Q ss_pred ccccccCcccc-cccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEE
Q 042944 462 SNNKFSGPISS-LCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKII 540 (637)
Q Consensus 462 ~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L 540 (637)
.+. ......++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ .++|++|
T Consensus 377 --------~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~---------~l~~~~--~~~L~~L 436 (549)
T 2z81_A 377 --------QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---------VVKTCI--PQTLEVL 436 (549)
T ss_dssp --------HHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS---------CCCTTS--CTTCSEE
T ss_pred --------ccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc---------cccchh--cCCceEE
Confidence 110 01111245555555555554 34444444555555555555544 222221 1345555
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944 541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 541 ~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
++++|++++ ++ ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|+.|..+++|++|++++|++
T Consensus 437 ~Ls~N~l~~-~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 437 DVSNNNLDS-FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp ECCSSCCSC-CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ECCCCChhh-hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 555555542 22 13455555555555554 3443 23455555555555555544444455555555555555554
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-44 Score=386.89 Aligned_cols=463 Identities=21% Similarity=0.250 Sum_probs=356.1
Q ss_pred CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCC
Q 042944 87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTA 166 (637)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~ 166 (637)
.++|++|++++|.++++.+ ..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+. .++...|+++++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLS-SLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCC-SCCHHHHTTCTT
T ss_pred CCCccEEECcCCccCccCh---hhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccC-ccCHHHhccCCC
Confidence 3689999999999998764 567888999999999999998777777777 99999999999998 777767999999
Q ss_pred CCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCc-hhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCc
Q 042944 167 LQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQL-PELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSL 242 (637)
Q Consensus 167 L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L 242 (637)
|++|++++|+++. +|..+.++++|++|++++|...+.. +..+..++ +|++|++++|.+... +..+..+++|
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-----SLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-----EEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-----ccCeeeccCCcccccChhhhhccccC
Confidence 9999999999996 4678999999999999999843344 46888888 999999999999864 4468889999
Q ss_pred cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCC----CCCCCCCCCCEEEccCCcCCCCCh----hhhcCCCCCC
Q 042944 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL----PDLSVFPFLTRLDVSDSRLNGTVS----EGLGRLSKLE 314 (637)
Q Consensus 243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~----~~l~~l~~L~ 314 (637)
++|++++|.+.......+..+++|++|++++|.+.+.. +....+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 99999999987443333456899999999999997642 222338899999999998876433 3346788999
Q ss_pred EEecCCCcCCCccc-----hhhhcCCCCCcEEEccCCcccccccCC-----CCCCCceeEEeccCCcCCCCccccc-cCC
Q 042944 315 FLDLFGNSLEGMIT-----ESHVSNLSKLKYMDFSFNSLALNFSFG-----WLPPFQLESIGLLHCKLGPHFPKWL-QSQ 383 (637)
Q Consensus 315 ~L~l~~n~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l-~~~ 383 (637)
.+++++|.+.+... ...+..+++++.+++.++.+....... +....+++++++.+|.+. .+|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcC
Confidence 99999998765321 123567889999999998876432111 122468999999999987 455544 679
Q ss_pred CCccEEEeeCCCCCCccchh--hhhcCCCccEEECCCCcCCCccc--ccccCCCCCCeEeCCCCcCcCCCCCCCCCccEE
Q 042944 384 KNYYFLDISDTEISDAVPSW--FWDLSPNLYYLNLSHNHLEGTVL--DLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL 459 (637)
Q Consensus 384 ~~L~~L~l~~n~i~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L 459 (637)
++|++|++++|.+.+..+.. ....+++|++|++++|.+++..+ ..+..+++|+.|++++|++++. |..+.
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~----- 407 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQ----- 407 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCC-----
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-Chhhc-----
Confidence 99999999999998765432 12345899999999999987643 4577888888888888887642 22110
Q ss_pred EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944 460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI 539 (637)
Q Consensus 460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~ 539 (637)
..++|++|++++|.++ .++..+ .++|+.|++++|++++ ++ ..+++|++
T Consensus 408 -----------------~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~---------~~---~~l~~L~~ 455 (549)
T 2z81_A 408 -----------------WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDS---------FS---LFLPRLQE 455 (549)
T ss_dssp -----------------CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSC---------CC---CCCTTCCE
T ss_pred -----------------ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhh---------hc---ccCChhcE
Confidence 0155666666666655 233332 2578888888888772 22 36778888
Q ss_pred EEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944 540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601 (637)
Q Consensus 540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 601 (637)
|++++|+++ .+|.. . .+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 456 L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 456 LYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888888887 77763 3 48888888888888887777778888888888888888876655
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.3e-44 Score=383.91 Aligned_cols=447 Identities=18% Similarity=0.158 Sum_probs=289.3
Q ss_pred cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcC
Q 042944 118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196 (637)
Q Consensus 118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~ 196 (637)
++|++++|.++. .|..+. ++|++|++++|.+. .++...|.++++|++|++++|+++.+ |..|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~---~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS---QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC---TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-cccccc---ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 578999999884 444333 78999999999998 66655889999999999999999986 7789999999999999
Q ss_pred CCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC--cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCC--cEEEcC
Q 042944 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS--LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPL--VILNLD 272 (637)
Q Consensus 197 ~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~ 272 (637)
+|.+. ..|.. .++ +|++|++++|.+... +..+..+++|++|++++|.+++ ..+..+++| +.|+++
T Consensus 78 ~N~l~-~lp~~--~l~-----~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 78 HNKLV-KISCH--PTV-----NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp SSCCC-EEECC--CCC-----CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred CCcee-ecCcc--ccC-----CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 99988 45544 555 999999999998863 3568888999999999998875 456667777 999999
Q ss_pred CCCC--CCCCCC-CCCCC-CCCEEEccCCcCCCCC-hhhhcCCCCCCEEecCCCc-------CCCccchhhhcCCCCCcE
Q 042944 273 GNQL--WGSLPD-LSVFP-FLTRLDVSDSRLNGTV-SEGLGRLSKLEFLDLFGNS-------LEGMITESHVSNLSKLKY 340 (637)
Q Consensus 273 ~~~~--~~~~~~-~~~~~-~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~-------~~~~~~~~~~~~l~~L~~ 340 (637)
+|.+ ....+. +..+. ....+++++|.+.+.. ...+..+++|+.+++++|. +.+..+ .+..+++|+.
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~ 224 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSN 224 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhh
Confidence 9888 433332 22222 2335677888766533 3356678888999988886 433222 5778889999
Q ss_pred EEccCCcccccccCCC---CCCCceeEEeccCCcCCCCccccc-----cCCCCccEEEeeCCCCCCccchhhhhcC--CC
Q 042944 341 MDFSFNSLALNFSFGW---LPPFQLESIGLLHCKLGPHFPKWL-----QSQKNYYFLDISDTEISDAVPSWFWDLS--PN 410 (637)
Q Consensus 341 L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~~ 410 (637)
|++++|.+.......+ ...++|++|++++|.+.+..|.++ ..+++|+.+++++|.+ .....++.... ++
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCc
Confidence 9998887764322211 113478888888888877777777 7888888888888887 32223443321 46
Q ss_pred ccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccc-cccccCCCccEEeC
Q 042944 411 LYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISS-LCSISGEYFSYLDV 486 (637)
Q Consensus 411 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l 486 (637)
|++|++++|.+..... ...+++|++|++++|.+.+..+.. +++|++|++++|++++.... ......++|++|++
T Consensus 304 L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 8888888887764331 246677777777777776644432 44555666666655531110 00111255555555
Q ss_pred CCCCCcccCch-hhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944 487 SDNLLSGELPD-CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565 (637)
Q Consensus 487 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L 565 (637)
++|.+++.+|. .+..+++|++|++++|++++ .+|..+. ++|++|++++|.++ .+|..++ .+++|++|
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L 449 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--------TIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQEL 449 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG--------GGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEE
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCc--------chhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEE
Confidence 55555542332 24455555555555555542 1222221 44555555555554 5555555 45555555
Q ss_pred eccCccccccCCcc-ccCCCCCcEeeCCCCcccc
Q 042944 566 SLRSNQFHGSIPRN-LCRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 566 ~L~~n~~~~~~~~~-l~~l~~L~~L~ls~n~l~~ 598 (637)
++++|+++ .+|.. +..+++|++|++++|++.+
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 55555555 34333 5555555555555555543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=373.85 Aligned_cols=450 Identities=19% Similarity=0.186 Sum_probs=366.8
Q ss_pred cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944 91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHL 170 (637)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 170 (637)
++|+++++.++.++ ..+. ++|++|++++|.+.+..+..+..+ ++|++|++++|.++ .++..+|.++++|++|
T Consensus 3 ~~l~ls~n~l~~ip----~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP----KDLS--QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQ-YLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCC----CSCC--TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCC-EEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccccc----cccc--ccccEEECCCCcccccChhhcccc-ccccEEecCCCccC-CcChHHhhcccCCCEE
Confidence 57899999999774 3333 899999999999998777777777 99999999999998 6654489999999999
Q ss_pred EcCCCcccchhhhcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCc--cEEEc
Q 042944 171 NLSLNQISAISKSFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL--QELHL 247 (637)
Q Consensus 171 ~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L--~~L~l 247 (637)
++++|+++.+|.. .+++|++|++++|.+.+ ..|..++.++ +|++|++++|.+.. ..+..+++| ++|++
T Consensus 75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-----~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-----QLKFLGLSTTHLEK--SSVLPIAHLNISKVLL 145 (520)
T ss_dssp ECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-----TCCEEEEEESSCCG--GGGGGGTTSCEEEEEE
T ss_pred ecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCC-----cceEEEecCcccch--hhccccccceeeEEEe
Confidence 9999999998876 89999999999999986 4678999998 99999999999875 456777777 99999
Q ss_pred cCCcC--CCCCCCcCCCCC-CCcEEEcCCCCCCCCCCC--CCCCCCCCEEEccCCc-------CCCCChhhhcCCCCCCE
Q 042944 248 FDNKL--DGSFPEKFRKPS-PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSR-------LNGTVSEGLGRLSKLEF 315 (637)
Q Consensus 248 ~~n~i--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~ 315 (637)
++|.+ .+..+..+..+. ....+++++|.+.+..+. +..+++|+.+++++|. +.+..+ .+..+++|+.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~ 224 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSN 224 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhh
Confidence 99998 667777777665 344667888887654433 3348999999999986 443343 6788999999
Q ss_pred EecCCCcCCCccchhhh--cCCCCCcEEEccCCcccccccCCC-----CCCCceeEEeccCCcCCCCcc-ccccCC---C
Q 042944 316 LDLFGNSLEGMITESHV--SNLSKLKYMDFSFNSLALNFSFGW-----LPPFQLESIGLLHCKLGPHFP-KWLQSQ---K 384 (637)
Q Consensus 316 L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~---~ 384 (637)
|++++|.+.+....... ...++|++|++++|.+.+..+..+ ..++.|+.+++.+|.+ ..| .++..+ .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 99999987653222111 124699999999999987777766 8899999999999988 344 444443 6
Q ss_pred CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC-----CCCCCCccEE
Q 042944 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV-----PPVPGNVTSL 459 (637)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L 459 (637)
+|+.|++++|.+..... ...+++|++|++++|.+++..+..+..+++|+.|++++|++.+.. ...+++|++|
T Consensus 303 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 89999999999876442 134589999999999999988888999999999999999998632 2357899999
Q ss_pred EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944 460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI 539 (637)
Q Consensus 460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~ 539 (637)
++++|++.+.++...+...++|+.|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|++
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~---------~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK---------SIPKQVVKLEALQE 448 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC---------CCCGGGGGCTTCCE
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc---------ccchhhhcCCCCCE
Confidence 99999999855554344449999999999999877776664 79999999999998 78888889999999
Q ss_pred EEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944 540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575 (637)
Q Consensus 540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~ 575 (637)
|++++|.++ .+|...+..+++|++|++++|+++..
T Consensus 449 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 449 LNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 999999998 78887555799999999999999743
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.2e-44 Score=389.87 Aligned_cols=357 Identities=18% Similarity=0.224 Sum_probs=199.8
Q ss_pred CCCCCCcCCcccCCCccEEEccCCcCCCC-----------------CCCcCC--CCCCCcEEEcCCCCCCCCCCC-CCCC
Q 042944 227 NKLTGSLPDITEFSSLQELHLFDNKLDGS-----------------FPEKFR--KPSPLVILNLDGNQLWGSLPD-LSVF 286 (637)
Q Consensus 227 n~~~~~~~~~~~~~~L~~L~l~~n~i~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~~ 286 (637)
|.++..++.+..+++|++|++++|.+++. .|..+. ++++|++|++++|.+.+..+. +..+
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 44444344466666777777777776653 566666 666677777766666554443 3346
Q ss_pred CCCCEEEccCCc-CCC-CChhhhcCC------CCCCEEecCCCcCCCccch-hhhcCCCCCcEEEccCCcccccccCCCC
Q 042944 287 PFLTRLDVSDSR-LNG-TVSEGLGRL------SKLEFLDLFGNSLEGMITE-SHVSNLSKLKYMDFSFNSLALNFSFGWL 357 (637)
Q Consensus 287 ~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 357 (637)
++|++|++++|. +++ .+|..+..+ ++|+.|++++|.++. ++. ..+.++++|++|++++|.+....+ .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 666677776666 655 455555544 666666666666663 322 246666666666666666664444 555
Q ss_pred CCCceeEEeccCCcCCCCccccccCCCC-ccEEEeeCCCCCCccchhhhhc-CCCccEEECCCCcCCCccccccc-----
Q 042944 358 PPFQLESIGLLHCKLGPHFPKWLQSQKN-YYFLDISDTEISDAVPSWFWDL-SPNLYYLNLSHNHLEGTVLDLSL----- 430 (637)
Q Consensus 358 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~i~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~----- 430 (637)
.+++|++|++++|.+. .+|.++..+++ |++|++++|.+. ..|..+... +++|++|++++|.+++..+..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 5666666666666655 44555666666 666666666665 233333221 13566666666666555554444
Q ss_pred --CCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCch-hhhc------
Q 042944 431 --NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD-CLLR------ 501 (637)
Q Consensus 431 --~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~------ 501 (637)
.++ +|++|++++|+++...+. .+...++|++|++++|.++ .+|. .+..
T Consensus 429 ~~~~~---------------------~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 429 PFKGI---------------------NVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK 485 (636)
T ss_dssp CCCCC---------------------CEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT
T ss_pred cccCC---------------------CCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCC-CcCHHHhcccccccc
Confidence 333 455555555555422222 1111255555555555555 2222 2221
Q ss_pred -cCCCcEEeccCccCCCCccccccccCCcccc--CCCCCcEEEcCCCcccccCChhhhhcCCCCcEEec------cCccc
Q 042944 502 -WQALAVLNLANNNFSGNFLTFFVGEIPPSLK--KCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSL------RSNQF 572 (637)
Q Consensus 502 -l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L------~~n~~ 572 (637)
+++|+.|++++|.++ .+|..+. .+++|++|++++|.++ .+|..++ .+++|+.|+| ++|++
T Consensus 486 ~l~~L~~L~Ls~N~l~---------~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT---------KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPL-NSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp TGGGCCEEECCSSCCC---------BCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGG-GCSSCCEEECCSCBCTTCCBC
T ss_pred ccCCccEEECcCCcCC---------ccChhhhhccCCCcCEEECCCCCCC-CcChhhh-cCCCCCEEECCCCcccccCcc
Confidence 125666666666655 4455444 5566666666666665 3555555 4666666666 33445
Q ss_pred cccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEEE
Q 042944 573 HGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIY 624 (637)
Q Consensus 573 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 624 (637)
.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++..+.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 555666666666666666666666 35555554 56666666666665543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.7e-44 Score=391.30 Aligned_cols=460 Identities=18% Similarity=0.224 Sum_probs=305.9
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCC------c------hhhhHHHhhcCCCcEEECCCCCCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS------N------SAYHWLFKISSNLLALDLNSNQLAGP 155 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~------~------~~~~~~~~~~~~L~~L~L~~n~l~~~ 155 (637)
.+++.|+|+++.+.+..+ ++++++++|++|+|++|.+. + ..|... . ..|+ ++++++.+.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp---~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~-~~l~-l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP---DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K-QKMR-MHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSCCEEEEC---GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H-HHHH-THHHHHHTCCC
T ss_pred CCEEEEEecCcccCCcCC---hHHhcCccceEEECcCCccccCCccccccccccCchHHH--H-HHHH-hhHHHhhhccC
Confidence 478888888888876654 66777888888888888641 1 122222 1 4456 66666666544
Q ss_pred CCchhcc-CCCCCCEEEcCCCcccchhhhcCCCCCCcEEEc--CCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC-
Q 042944 156 IPDYAFS-NMTALQHLNLSLNQISAISKSFGNMCGLKTLHL--FDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG- 231 (637)
Q Consensus 156 l~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l--~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~- 231 (637)
++. .+. .+..+..+++....+.. .....++.+.+ ..|.+++ .|..+++++ +|++|++++|.++.
T Consensus 154 ~~~-~~~~~~~~l~~~~l~~~~~~~-----~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~-----~L~~L~Ls~n~l~~~ 221 (636)
T 4eco_A 154 PRE-DFSDLIKDCINSDPQQKSIKK-----SSRITLKDTQIGQLSNNITF-VSKAVMRLT-----KLRQFYMGNSPFVAE 221 (636)
T ss_dssp GGG-GSCHHHHHHHHHCTTSCCCCC-----CCCCCCCTTTTTCCSCEEEE-ECGGGGGCT-----TCCEEEEESCCCCGG
T ss_pred chh-hHHHHHHHHhhcCcccccccc-----ccccchhhhhhccccCCCcc-CCHHHhccc-----CCCEEECcCCccccc
Confidence 443 222 11111122221111110 01111111112 1344443 455555555 55555555555554
Q ss_pred -----------------CcCCcc--cCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCC-CCC-CCC-CCCC----
Q 042944 232 -----------------SLPDIT--EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQ-LWG-SLP-DLSV---- 285 (637)
Q Consensus 232 -----------------~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~-~~~~---- 285 (637)
.++.+. .+++|++|++++|.+.+..|..+.++++|++|++++|+ +++ ..+ .+..
T Consensus 222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~ 301 (636)
T 4eco_A 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301 (636)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence 455566 77788888888888777777788888888888888887 654 222 2322
Q ss_pred --CCCCCEEEccCCcCCCCChh--hhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCc
Q 042944 286 --FPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQ 361 (637)
Q Consensus 286 --~~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 361 (637)
+++|++|++++|.++ .+|. .+..+++|+.|++++|.+.+.++ .+..+++|++|++++|.+. ..+..+..+++
T Consensus 302 ~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 378888888888888 6666 78888888888888888875555 5777888888888888887 55556777777
Q ss_pred -eeEEeccCCcCCCCccccccCCC--CccEEEeeCCCCCCccchhhhh------cCCCccEEECCCCcCCCcccccccCC
Q 042944 362 -LESIGLLHCKLGPHFPKWLQSQK--NYYFLDISDTEISDAVPSWFWD------LSPNLYYLNLSHNHLEGTVLDLSLNY 432 (637)
Q Consensus 362 -L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~~ 432 (637)
|++|++++|.+. .+|.++...+ +|+.|++++|.+.+..|..+.. .+++|++|++++|.++......+..+
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence 888888888887 6677776654 8999999999988877666541 23689999999999986666666678
Q ss_pred CCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhh--ccCCCcEEec
Q 042944 433 AGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL--RWQALAVLNL 510 (637)
Q Consensus 433 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l 510 (637)
++|+.|++++|.+....+..+...... + ...++|+.|++++|.++ .+|..+. .+++|+.|++
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~-~--------------~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENEN-F--------------KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEE-C--------------TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHHHhcccccc-c--------------cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEEC
Confidence 888888888887763322222111000 0 00036777777777777 5666665 7788888888
Q ss_pred cCccCCCCccccccccCCccccCCCCCcEEEc------CCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCC
Q 042944 511 ANNNFSGNFLTFFVGEIPPSLKKCNELKIIDA------GDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS 584 (637)
Q Consensus 511 ~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~l------s~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 584 (637)
++|+++ .+|..+..+++|++|++ ++|.+.+.+|..+. .+++|++|+|++|++. .+|..+. +
T Consensus 521 s~N~l~---------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~-~ip~~~~--~ 587 (636)
T 4eco_A 521 SYNSFS---------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIR-KVNEKIT--P 587 (636)
T ss_dssp CSSCCS---------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCCC-BCCSCCC--T
T ss_pred CCCCCC---------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCCcCC-ccCHhHh--C
Confidence 888877 46777777888888888 45667777887777 5888888888888884 7777665 7
Q ss_pred CCcEeeCCCCcccccc
Q 042944 585 KIQLLDFSLNSISGAI 600 (637)
Q Consensus 585 ~L~~L~ls~n~l~~~~ 600 (637)
+|+.|++++|++...-
T Consensus 588 ~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 588 NISVLDIKDNPNISID 603 (636)
T ss_dssp TCCEEECCSCTTCEEE
T ss_pred cCCEEECcCCCCcccc
Confidence 8888888888777543
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.4e-41 Score=371.07 Aligned_cols=507 Identities=21% Similarity=0.230 Sum_probs=354.4
Q ss_pred CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944 89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ 168 (637)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 168 (637)
++++|+|++|.|+.+.+ ..|.++++|++|+|++|.++...+.+|..+ ++|++|+|++|+++ .++.++|.++++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQ-SLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence 67777777777777654 445666777777777777776555555555 77777777777776 67666777777777
Q ss_pred EEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCC----C
Q 042944 169 HLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFS----S 241 (637)
Q Consensus 169 ~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~----~ 241 (637)
+|++++|+++.++. .|+++++|++|++++|.+.. ..|..+..++ +|++|++++|.+....+ .+..+. .
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-----hhhhhcccCccccccccccccchhhhhhh
Confidence 77777777777654 47777777777777777754 3456666676 77777777777765433 232222 3
Q ss_pred ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCC--CCCCCCCCCCEEEccCCc------CCCCChhhhcCCCCC
Q 042944 242 LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL--PDLSVFPFLTRLDVSDSR------LNGTVSEGLGRLSKL 313 (637)
Q Consensus 242 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~------~~~~~~~~l~~l~~L 313 (637)
...++++.|.+....+..+. ...++.+++.+|...... ..+..++.++...+..+. +.......+..+..+
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 34667777776644443333 334566666665432110 112224444444332221 111222233334444
Q ss_pred CEEecCCCcCCCc--cchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEe
Q 042944 314 EFLDLFGNSLEGM--ITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDI 391 (637)
Q Consensus 314 ~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 391 (637)
....+..+..... .....+....+++.+++..+.+..... +.....++.+++.+|.+....+ ..++.|+.+++
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l 356 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTF 356 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEE
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc---ccchhhhhccc
Confidence 4444443322211 111235556778888888887764433 3445678899999988765433 34577888999
Q ss_pred eCCCCCCccchhhhhcCCCccEEECCCCcCCCc--ccccccCCCCCCeEeCCCCcCcCCCCC--CCCCccEEEccccccc
Q 042944 392 SDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT--VLDLSLNYAGYPGIDLSSNDFEGPVPP--VPGNVTSLNLSNNKFS 467 (637)
Q Consensus 392 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~L~~n~l~ 467 (637)
..|.+...... . .+++|+.+++++|.+... .+.......+|+.+++..+......+. .+++|+.+++.++...
T Consensus 357 ~~n~~~~~~~~--~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 357 TSNKGGNAFSE--V-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp ESCCSCCBCCC--C-BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred ccccCCCCccc--c-cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence 88877654332 2 248999999999988643 344556788999999999877654433 3789999999999887
Q ss_pred CcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcc
Q 042944 468 GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKF 547 (637)
Q Consensus 468 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l 547 (637)
...+...+...++++.+++++|.+....+..+..+++|+.|++++|.+.+. ..|..+..+++|++|++++|++
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~-------~~~~~~~~l~~L~~L~Ls~N~L 506 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-------FLPDIFTELRNLTFLDLSQCQL 506 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCC
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc-------cCchhhhhccccCEEECCCCcc
Confidence 777666666669999999999999988889999999999999999986522 4567788999999999999999
Q ss_pred cccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccc-ccceeeccCCCeeEE
Q 042944 548 SGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNL-TAMVEKASSNSTITH 622 (637)
Q Consensus 548 ~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~l~~n~l~~ 622 (637)
++..|..+. ++++|++|+|++|++++..|..|..+++|++||+++|++++..|+.|..+ ++|++|++++|+++.
T Consensus 507 ~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 507 EQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CEECTTTTT-TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCcChHHHc-CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 855555554 79999999999999997778889999999999999999999999999988 689999999999853
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-41 Score=377.62 Aligned_cols=385 Identities=18% Similarity=0.200 Sum_probs=254.0
Q ss_pred CcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC------------------CcCCcc--cCCCccEEEccCCcCCCCCC
Q 042944 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG------------------SLPDIT--EFSSLQELHLFDNKLDGSFP 257 (637)
Q Consensus 198 n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~------------------~~~~~~--~~~~L~~L~l~~n~i~~~~~ 257 (637)
|.+++ +|..+++++ +|+.|++++|.++. .++.+. .+++|++|++++|.+.+..|
T Consensus 435 N~L~~-IP~~l~~L~-----~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 435 NRITF-ISKAIQRLT-----KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508 (876)
T ss_dssp CEEEE-ECGGGGGCT-----TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred Ccccc-hhHHHhcCC-----CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh
Confidence 45554 566666666 66666666666665 444554 66777777777777666666
Q ss_pred CcCCCCCCCcEEEcCCCC-CCC-CCC--------CCCCCCCCCEEEccCCcCCCCChh--hhcCCCCCCEEecCCCcCCC
Q 042944 258 EKFRKPSPLVILNLDGNQ-LWG-SLP--------DLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 258 ~~l~~l~~L~~L~l~~~~-~~~-~~~--------~~~~~~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~ 325 (637)
..+.++++|+.|++++|+ +.+ ..+ .+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+.
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence 667777777777777776 543 121 2223456777777777766 5555 6667777777777777666
Q ss_pred ccchhhhcCCCCCcEEEccCCcccccccCCCCCCCc-eeEEeccCCcCCCCccccccCCCC--ccEEEeeCCCCCCccch
Q 042944 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQ-LESIGLLHCKLGPHFPKWLQSQKN--YYFLDISDTEISDAVPS 402 (637)
Q Consensus 326 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~i~~~~~~ 402 (637)
.++ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|.++...+. |+.|++++|.+.+..+.
T Consensus 587 ~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 233 4666677777777777666 44444555555 666666666665 45555554433 66666666666554332
Q ss_pred hh---hh-cCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccC
Q 042944 403 WF---WD-LSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG 478 (637)
Q Consensus 403 ~~---~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 478 (637)
.. .. ..++|++|++++|.++......+..+++|+.|++++|.+.......+..... ....+
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~---------------~l~nl 727 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG---------------NYKNT 727 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS---------------CCTTG
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc---------------ccccc
Confidence 11 00 1135666666666666444343445555555555555554221111110000 00001
Q ss_pred CCccEEeCCCCCCcccCchhhh--ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCC------Cccccc
Q 042944 479 EYFSYLDVSDNLLSGELPDCLL--RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGD------NKFSGT 550 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~------n~l~~~ 550 (637)
++|+.|++++|.++ .+|..+. .+++|+.|++++|+++ .+|..+..+++|+.|++++ |.+.+.
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~---------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS---------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS---------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC---------ccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 37888888888888 6777776 8899999999999988 5777888899999999976 777778
Q ss_pred CChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEE
Q 042944 551 IPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHI 623 (637)
Q Consensus 551 ~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 623 (637)
+|..+. .+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|+++.|
T Consensus 798 ip~~l~-~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 798 WPTGIT-TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp CCTTGG-GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred ChHHHh-cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 888887 699999999999999 48888765 6999999999999988888888888888888888888776
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-40 Score=368.72 Aligned_cols=437 Identities=16% Similarity=0.199 Sum_probs=316.7
Q ss_pred CCCCEEEcCCCcccc-hhhhcCCCCCCcEEEc-CCCcCCCCchhHhhhcc-cCCCC---cccE--------E--------
Q 042944 165 TALQHLNLSLNQISA-ISKSFGNMCGLKTLHL-FDNNLTGQLPELFLNLS-GCSKN---SLEI--------L-------- 222 (637)
Q Consensus 165 ~~L~~L~L~~n~l~~-l~~~~~~l~~L~~L~l-~~n~i~~~~~~~l~~l~-~~~~~---~L~~--------L-------- 222 (637)
.+++.|+|+++.+.. +|..++++++|++|++ ++|.+.+..+....... ..... .++. .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 578889999998885 7888899999999999 77765433111000000 00000 0000 0
Q ss_pred ----EcCCCCCCCCcCCcccCCCccEEEccC--CcCCCCCCCcCCCCCCCcEEEcCCCCCCC------------------
Q 042944 223 ----KLGGNKLTGSLPDITEFSSLQELHLFD--NKLDGSFPEKFRKPSPLVILNLDGNQLWG------------------ 278 (637)
Q Consensus 223 ----~l~~n~~~~~~~~~~~~~~L~~L~l~~--n~i~~~~~~~l~~l~~L~~L~l~~~~~~~------------------ 278 (637)
.+..+... ..........++.+.+.. |.+++ .|..+.++++|+.|++++|.+.+
T Consensus 403 l~~~~l~~~~~~-~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEM-KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTS-CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccc-cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00000000 000001112333333333 56665 66778888888888888888876
Q ss_pred CCCCCC--CCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCc-CCC-ccchh------hhcCCCCCcEEEccCCcc
Q 042944 279 SLPDLS--VFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS-LEG-MITES------HVSNLSKLKYMDFSFNSL 348 (637)
Q Consensus 279 ~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~------~~~~l~~L~~L~l~~n~~ 348 (637)
.+..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|.. .+..+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 555555 68888888888888877888888888888888888887 665 34431 223455888888888888
Q ss_pred cccccC--CCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCC-ccEEECCCCcCCCcc
Q 042944 349 ALNFSF--GWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPN-LYYLNLSHNHLEGTV 425 (637)
Q Consensus 349 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~-L~~L~l~~n~i~~~~ 425 (637)
. ..+. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..|..+... ++ |++|++++|.++ .+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE-CTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhc-cccCCEEECcCCCCC-cC
Confidence 8 5555 6778888888888888887 666 7888888888888888888 566666655 56 888888888887 55
Q ss_pred cccccCCC--CCCeEeCCCCcCcCCCCCC--------CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccC
Q 042944 426 LDLSLNYA--GYPGIDLSSNDFEGPVPPV--------PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGEL 495 (637)
Q Consensus 426 ~~~~~~~~--~L~~L~l~~n~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 495 (637)
+..+...+ +|+.|++++|.+.+..|.. .++|++|++++|+++.. +...+...++|+.|++++|.++ .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-cc
Confidence 56565554 4888999988887755432 24899999999999844 4333333489999999999998 55
Q ss_pred chhhh--------ccCCCcEEeccCccCCCCccccccccCCcccc--CCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944 496 PDCLL--------RWQALAVLNLANNNFSGNFLTFFVGEIPPSLK--KCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565 (637)
Q Consensus 496 ~~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L 565 (637)
|..+. ++++|+.|+|++|+++ .+|..+. .+++|+.|++++|.++ .+|..++ .+++|+.|
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~~l~-~L~~L~~L 781 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL-NSSQLKAF 781 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC---------CCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGG-GCTTCCEE
T ss_pred ChHHhccccccccccCCccEEECCCCCCc---------cchHHhhhccCCCcCEEEeCCCCCC-ccchhhh-cCCCCCEE
Confidence 54433 2349999999999998 6788876 8999999999999998 5898888 69999999
Q ss_pred eccC------ccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEEEE
Q 042944 566 SLRS------NQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYV 625 (637)
Q Consensus 566 ~L~~------n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~ 625 (637)
+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++..+..
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 9977 778888999999999999999999999 68898877 699999999999988763
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-40 Score=360.29 Aligned_cols=454 Identities=19% Similarity=0.174 Sum_probs=299.1
Q ss_pred CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcE
Q 042944 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKT 192 (637)
Q Consensus 114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~ 192 (637)
+...+++++++|.++. .|..+ .++|++|++++|.+. .++..+|.++++|++|++++|+++.+ |..|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4556899999999985 44433 378999999999998 77766899999999999999999997 678999999999
Q ss_pred EEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCc--CCcccCCCccEEEccCCcCCCCCCCcCCCCCCC--cE
Q 042944 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL--PDITEFSSLQELHLFDNKLDGSFPEKFRKPSPL--VI 268 (637)
Q Consensus 193 L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~ 268 (637)
|++++|.+. ..|.. .++ +|++|++++|.+.... ..+..+++|++|++++|.++.. .+..+++| +.
T Consensus 105 L~Ls~N~l~-~lp~~--~l~-----~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~ 173 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMA-----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC 173 (562)
T ss_dssp EECTTSCCC-EECSC--CCT-----TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred EECCCCcCC-ccCcc--ccc-----cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence 999999998 45544 566 9999999999988643 4688899999999999998753 34444555 99
Q ss_pred EEcCCCCC--CCCCCCCCC-CC-CCCEEEccCCcCCCCCh-hhhcCCCCCCEEecCCCcCCCc---cchhhhcCCCCCcE
Q 042944 269 LNLDGNQL--WGSLPDLSV-FP-FLTRLDVSDSRLNGTVS-EGLGRLSKLEFLDLFGNSLEGM---ITESHVSNLSKLKY 340 (637)
Q Consensus 269 L~l~~~~~--~~~~~~~~~-~~-~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~ 340 (637)
|++++|.+ ....+.... +. ..-.+++++|.+.+..+ ..+..+++|+.+++++|..... .....+..+++|+.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99999988 544333222 22 12256778887765333 3456778899999998852100 01124677888888
Q ss_pred EEccCCcccccccC---CCCCCCceeEEeccCCcCCCCccccc-----cCCCCccEEEeeCCCCCCccchhhhhc--CCC
Q 042944 341 MDFSFNSLALNFSF---GWLPPFQLESIGLLHCKLGPHFPKWL-----QSQKNYYFLDISDTEISDAVPSWFWDL--SPN 410 (637)
Q Consensus 341 L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~~ 410 (637)
+++.++.+...... ......+|++|++++|.+.+..|..+ ..++.|+.+++..+.+ .....++... .++
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCc
Confidence 88888766532211 11123489999999998887777766 6677777777777776 2222333222 156
Q ss_pred ccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCccccc-ccccCCCccEEeC
Q 042944 411 LYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSL-CSISGEYFSYLDV 486 (637)
Q Consensus 411 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l 486 (637)
|++|++++|.+..... ...+++|++|++++|.+.+..+.. +++|++|++++|++++..... .....++|+.|++
T Consensus 333 L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 8888888888754321 256677777777777777655433 456666666666665432111 1122266666666
Q ss_pred CCCCCcccCc-hhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944 487 SDNLLSGELP-DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565 (637)
Q Consensus 487 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L 565 (637)
++|.+++.+| ..+..+++|++|++++|++++ .+|..+. ++|++|++++|.++ .+|..++ .+++|++|
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L 478 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--------SVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQEL 478 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG--------GGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEE
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCc--------chhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEE
Confidence 6666665233 335556666666666666552 2222221 45666666666665 5666555 46666666
Q ss_pred eccCccccccCCcc-ccCCCCCcEeeCCCCccccc
Q 042944 566 SLRSNQFHGSIPRN-LCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 566 ~L~~n~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~ 599 (637)
+|++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 66666666 44444 56666666666666666543
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-39 Score=356.99 Aligned_cols=523 Identities=17% Similarity=0.153 Sum_probs=395.1
Q ss_pred eeeeeccccccccccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCcc
Q 042944 39 LTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLT 118 (637)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~ 118 (637)
|.......++..+++ .++.|+|++|.+..+.+ ..|..+++|++|+|++|.++.+.+ .+|.++++|+
T Consensus 38 c~~~~l~~vP~~lp~-----~~~~LdLs~N~i~~l~~------~~f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~ 103 (635)
T 4g8a_A 38 CMELNFYKIPDNLPF-----STKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLS 103 (635)
T ss_dssp CTTSCCSSCCSSSCT-----TCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCC
T ss_pred CCCCCcCccCCCCCc-----CCCEEEeeCCCCCCCCH------HHHhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCC
Confidence 333344445544432 35679999998765432 358899999999999999998875 5577789999
Q ss_pred EEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcC
Q 042944 119 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLF 196 (637)
Q Consensus 119 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~ 196 (637)
+|+|++|+++...+..|..+ ++|++|++++|.++ .++...|+++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 104 ~L~Ls~N~l~~l~~~~f~~L-~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 104 TLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp EEECTTCCCCEECGGGGTTC-TTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred EEEccCCcCCCCCHHHhcCC-CCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999999997666666666 99999999999998 8887789999999999999999987 57889999999999999
Q ss_pred CCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCC
Q 042944 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQ 275 (637)
Q Consensus 197 ~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~ 275 (637)
+|.+.+..+..+..+..... ....++++.|.+....+.......++.+++.+|.... ..+..+..+..++...+..+.
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~-~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPL-LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTT-CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred Cccccccccccccchhhhhh-hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence 99999888888887762211 3457899999998766666666678889998876442 222345566667666553322
Q ss_pred CC------CC-CCCCCCCCCCCEEEccCCcCCC---CChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccC
Q 042944 276 LW------GS-LPDLSVFPFLTRLDVSDSRLNG---TVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF 345 (637)
Q Consensus 276 ~~------~~-~~~~~~~~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 345 (637)
.. .. ...+.....+....+..+.... .....+..+.+++.+.+.++.+.... .+.....++.|++.+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVN 337 (635)
T ss_dssp CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEES
T ss_pred cccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhccc
Confidence 21 11 1122224555555554443321 22334556778999999888876532 356678899999999
Q ss_pred CcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc--chhhhhcCCCccEEECCCCcCCC
Q 042944 346 NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV--PSWFWDLSPNLYYLNLSHNHLEG 423 (637)
Q Consensus 346 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~l~~n~i~~ 423 (637)
|.+..... ..+..++.+.+..+..... .....+++|+.++++.|.+.... +..... ..+|+.+++..+.+..
T Consensus 338 ~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~ 411 (635)
T 4g8a_A 338 CKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT 411 (635)
T ss_dssp CEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE
T ss_pred ccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh-hhhhhhhhcccccccc
Confidence 98865443 3456788888888876543 33457899999999999886543 333333 4799999999988764
Q ss_pred cccccccCCCCCCeEeCCCCcCcCCCCC----CCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc-ccCchh
Q 042944 424 TVLDLSLNYAGYPGIDLSSNDFEGPVPP----VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS-GELPDC 498 (637)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~ 498 (637)
.+..+..++.|+.++++.+......+. .+.+++.++++.|.+....+...... +.++.|++++|... ...|..
T Consensus 412 -~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~ 489 (635)
T 4g8a_A 412 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDI 489 (635)
T ss_dssp -ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSC
T ss_pred -ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc-hhhhhhhhhhcccccccCchh
Confidence 344577899999999999987655443 36789999999999987766554433 89999999999754 457788
Q ss_pred hhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCc
Q 042944 499 LLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPR 578 (637)
Q Consensus 499 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~ 578 (637)
|..+++|+.|++++|++++ ..|..+..+++|++|++++|+++ .++...++.+++|+.|+|++|++++..|.
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~--------l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp CTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred hhhccccCEEECCCCccCC--------cChHHHcCCCCCCEEECCCCcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 9999999999999999883 34667889999999999999998 55555555799999999999999988888
Q ss_pred cccCC-CCCcEeeCCCCcccc
Q 042944 579 NLCRL-SKIQLLDFSLNSISG 598 (637)
Q Consensus 579 ~l~~l-~~L~~L~ls~n~l~~ 598 (637)
.+..+ ++|+.|++++|++..
T Consensus 561 ~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTCCCTTCCEEECTTCCBCC
T ss_pred HHHhhhCcCCEEEeeCCCCcc
Confidence 99888 689999999999974
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.5e-40 Score=353.63 Aligned_cols=456 Identities=20% Similarity=0.196 Sum_probs=359.3
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT 165 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~ 165 (637)
.+...++++++++.++.++ ..+. ++|++|++++|.+.+..+..+..+ ++|++|++++|.++ .++..+|.+++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip----~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~-~~~~~~~~~l~ 100 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVP----KDLP--PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIR-SLDFHVFLFNQ 100 (562)
T ss_dssp ----CCEEECTTSCCCSCC----TTSC--TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCC-EECTTTTTTCT
T ss_pred ccCCCcEEEcCCCCCccCC----CCCC--CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCC-cCCHHHhCCCC
Confidence 4455699999999999874 3332 899999999999998777777777 99999999999998 66555899999
Q ss_pred CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCC-chhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCc--
Q 042944 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ-LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL-- 242 (637)
Q Consensus 166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L-- 242 (637)
+|++|++++|+++.+|.. .+++|++|++++|.+.+. .|..|++++ +|++|++++|.+.. ..+..+++|
T Consensus 101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-----~L~~L~L~~n~l~~--~~~~~l~~L~L 171 (562)
T 3a79_B 101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-----KLTFLGLSAAKFRQ--LDLLPVAHLHL 171 (562)
T ss_dssp TCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-----TCCEEEEECSBCCT--TTTGGGTTSCE
T ss_pred CCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-----cccEEecCCCcccc--Cchhhhhhcee
Confidence 999999999999999877 899999999999999863 468999998 99999999999875 345566666
Q ss_pred cEEEccCCcC--CCCCCCcCCCCC-CCcEEEcCCCCCCCCCCC--CCCCCCCCEEEccCCcCC----CCChhhhcCCCCC
Q 042944 243 QELHLFDNKL--DGSFPEKFRKPS-PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLN----GTVSEGLGRLSKL 313 (637)
Q Consensus 243 ~~L~l~~n~i--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~----~~~~~~l~~l~~L 313 (637)
++|++++|.+ ++..+..+..+. ..-.+++++|.+....+. +..+++|+.+++++|... ......+..+++|
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9999999998 777777776654 122567788887654433 234788999999998521 0223456788999
Q ss_pred CEEecCCCcCCCccchh--hhcCCCCCcEEEccCCcccccccCCC-----CCCCceeEEeccCCcCCCCcc-cccc---C
Q 042944 314 EFLDLFGNSLEGMITES--HVSNLSKLKYMDFSFNSLALNFSFGW-----LPPFQLESIGLLHCKLGPHFP-KWLQ---S 382 (637)
Q Consensus 314 ~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~---~ 382 (637)
+.++++++.+.+..... .....++|++|++++|.+....+..+ ..+..|+.+++..+.+ .+| .++. .
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 99999888766432111 12234599999999999986666655 5666677777776665 333 2222 2
Q ss_pred CCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC-----CCCCCCcc
Q 042944 383 QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV-----PPVPGNVT 457 (637)
Q Consensus 383 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~ 457 (637)
..+|+.|++++|.+..... ...+++|++|++++|.+++..+..+..+++|+.|++++|++.+.. ...+++|+
T Consensus 330 ~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp TCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred cCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 3679999999999865432 134589999999999999988888999999999999999998743 24478999
Q ss_pred EEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCC
Q 042944 458 SLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNEL 537 (637)
Q Consensus 458 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L 537 (637)
+|++++|++++.++...+...++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~---------~ip~~~~~l~~L 475 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM---------SIPKDVTHLQAL 475 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC---------CCCTTTTSSCCC
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc---------ccChhhcCCCCC
Confidence 9999999999855554444559999999999999876666554 79999999999998 788888899999
Q ss_pred cEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575 (637)
Q Consensus 538 ~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~ 575 (637)
++|++++|+++ .+|...+..+++|+.|++++|++...
T Consensus 476 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99999999998 88887455799999999999998754
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-37 Score=321.46 Aligned_cols=390 Identities=25% Similarity=0.286 Sum_probs=162.9
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc-hhhhcCCCCCC-------------cEEEcCCCcCCCCch
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGL-------------KTLHLFDNNLTGQLP 205 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~l~~L-------------~~L~l~~n~i~~~~~ 205 (637)
.+|++|++++|.+ +.+|. .++++++|++|++++|++.. +|..++.+.+| ++|++++|.+++ .|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 7899999999999 49988 78999999999999998874 78888888776 666666665553 22
Q ss_pred hHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCC
Q 042944 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSV 285 (637)
Q Consensus 206 ~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 285 (637)
.. .+ +|++|++++|.+...+. ..++|++|++++|.+++.. .. .++|++|++++|.+.+ .+.+..
T Consensus 88 ~~---~~-----~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~-lp~~~~ 151 (454)
T 1jl5_A 88 EL---PP-----HLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEK-LPELQN 151 (454)
T ss_dssp SC---CT-----TCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSS-CCCCTT
T ss_pred CC---cC-----CCCEEEccCCcCCcccc---ccCCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCC-CcccCC
Confidence 21 12 56666666665554221 1245666666666555321 11 1456666666665554 224444
Q ss_pred CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEE
Q 042944 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI 365 (637)
Q Consensus 286 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 365 (637)
+++|++|++++|.+++ +|.. .++|+.|++++|.+.+ .+ .+.++++|++|++++|.+..... ...+|++|
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L 220 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESI 220 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEE
Confidence 5566666666665553 2221 2355666666665554 22 25555556666666555543111 11345555
Q ss_pred eccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC
Q 042944 366 GLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF 445 (637)
Q Consensus 366 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 445 (637)
++++|.+. .+|. +..+++|++|++++|.+.+.. . .+++|++|++++|.+++. +. ..++|+.|++++|.+
T Consensus 221 ~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~-~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLP-D----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIF 289 (454)
T ss_dssp ECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCC-S----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred ECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccc-c----cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCcc
Confidence 55555544 2332 445555555555555554321 1 124555555555554432 11 124445555555544
Q ss_pred cCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc-CCCcEEeccCccCCCCcccccc
Q 042944 446 EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW-QALAVLNLANNNFSGNFLTFFV 524 (637)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~ 524 (637)
.+. +..+++|++|++++|++++. + .+ ++|+.|++++|+++
T Consensus 290 ~~l-~~~~~~L~~L~l~~N~l~~i--------------------------~----~~~~~L~~L~Ls~N~l~-------- 330 (454)
T 1jl5_A 290 SGL-SELPPNLYYLNASSNEIRSL--------------------------C----DLPPSLEELNVSNNKLI-------- 330 (454)
T ss_dssp SEE-SCCCTTCCEEECCSSCCSEE--------------------------C----CCCTTCCEEECCSSCCS--------
T ss_pred Ccc-cCcCCcCCEEECcCCcCCcc--------------------------c----CCcCcCCEEECCCCccc--------
Confidence 431 11223444444444444321 1 11 24455555555444
Q ss_pred ccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccc--cCCccccCC-------------CCCcEe
Q 042944 525 GEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG--SIPRNLCRL-------------SKIQLL 589 (637)
Q Consensus 525 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~--~~~~~l~~l-------------~~L~~L 589 (637)
.+|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|
T Consensus 331 -~lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 331 -ELPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp -CCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred -ccccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence 22222 244455555555444 3443 13445555555555444 344444443 788999
Q ss_pred eCCCCcccc--cccccccccccceeeccCCCeeEEEE
Q 042944 590 DFSLNSISG--AIPKCINNLTAMVEKASSNSTITHIY 624 (637)
Q Consensus 590 ~ls~n~l~~--~~p~~l~~l~~L~~l~l~~n~l~~~~ 624 (637)
++++|++++ .+|. +++.|.+++|.+....
T Consensus 402 ~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 402 HVETNPLREFPDIPE------SVEDLRMNSERVVDPY 432 (454)
T ss_dssp -------------------------------------
T ss_pred ECCCCcCCccccchh------hHhheeCcCcccCCcc
Confidence 999999886 5553 3555667777765443
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.7e-37 Score=321.16 Aligned_cols=415 Identities=22% Similarity=0.199 Sum_probs=204.9
Q ss_pred CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCC-------------CcEEECCCCCCC
Q 042944 87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN-------------LLALDLNSNQLA 153 (637)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~-------------L~~L~L~~n~l~ 153 (637)
.++|++|++++|.+..+ ++.++++++|++|++++|.+.+..|..+..+ .+ +++|++++|.++
T Consensus 10 ~~~L~~L~l~~n~l~~i----P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCC-HHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccCchhhC----ChhHhcccchhhhhccCCcccccCCcccccc-hhcchhhhhhhhccCCCEEEecCCccc
Confidence 46677777777777444 2556666777777777776655555444433 33 355555555554
Q ss_pred CCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCc
Q 042944 154 GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL 233 (637)
Q Consensus 154 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~ 233 (637)
.+|. -.++|++|++++|.++.+|.. .++|++|++++|.+ ....
T Consensus 85 -~lp~----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l-----------------------------~~l~ 127 (454)
T 1jl5_A 85 -SLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-----------------------------KALS 127 (454)
T ss_dssp -CCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-----------------------------SCCC
T ss_pred -cCCC----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCcc-----------------------------Cccc
Confidence 4443 124555555555555554432 24455555555544 4211
Q ss_pred CCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCC
Q 042944 234 PDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL 313 (637)
Q Consensus 234 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 313 (637)
. + .++|++|++++|.+++ .| .+..+++|++|++++|++.+.... .++|++|++++|.+++ ++ .+..+++|
T Consensus 128 ~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L 197 (454)
T 1jl5_A 128 D-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFL 197 (454)
T ss_dssp S-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCC
Confidence 1 1 1345555555555543 22 355555555555555555432211 2356666666666554 23 35556666
Q ss_pred CEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeC
Q 042944 314 EFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD 393 (637)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 393 (637)
+.|++++|.+.+. +. ..++|++|++++|.+... + .+..+++|++|++++|.+.. +|. ..++|+.|++++
T Consensus 198 ~~L~l~~N~l~~l-~~----~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~ 266 (454)
T 1jl5_A 198 TAIYADNNSLKKL-PD----LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRD 266 (454)
T ss_dssp CEEECCSSCCSSC-CC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCS
T ss_pred CEEECCCCcCCcC-CC----CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCC
Confidence 6666666665542 11 124666666666666522 2 35566666666666666653 232 247899999999
Q ss_pred CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCccccc
Q 042944 394 TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSL 473 (637)
Q Consensus 394 n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 473 (637)
|.+.+. +. .+++|++|++++|.+++... ..++|+.|++++|.+.+. +..+++|++|++++|++++... .
T Consensus 267 N~l~~l-~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~~~~~L~~L~Ls~N~l~~lp~-~ 335 (454)
T 1jl5_A 267 NYLTDL-PE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLIELPA-L 335 (454)
T ss_dssp SCCSCC-CC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSSCCSCCCC-C
T ss_pred Cccccc-Cc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-cCCcCcCCEEECCCCccccccc-c
Confidence 998873 32 23799999999999986321 236899999999999874 3445799999999999986332 2
Q ss_pred ccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCCh
Q 042944 474 CSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA 553 (637)
Q Consensus 474 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 553 (637)
.++|++|++++|.++ .+|. .+++|+.|++++|++++.. .+|..+. .| +.|.+.+.+|.
T Consensus 336 ----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~------~ip~~l~------~L--~~n~~~~~i~~ 393 (454)
T 1jl5_A 336 ----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFP------DIPESVE------DL--RMNSHLAEVPE 393 (454)
T ss_dssp ----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCC------CCCTTCC------EE--ECCC-------
T ss_pred ----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCC------CChHHHH------hh--hhccccccccc
Confidence 289999999999998 4565 4789999999999988421 3454433 23 34555556665
Q ss_pred hhhhcCCCCcEEeccCccccc--cCCccccCCCCCcEeeCCCCccccccccccccc
Q 042944 554 WIGDTLPKLAILSLRSNQFHG--SIPRNLCRLSKIQLLDFSLNSISGAIPKCINNL 607 (637)
Q Consensus 554 ~l~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l 607 (637)
.+++|+.|++++|++++ .+| .+++.|++++|.+.+..|......
T Consensus 394 ----~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 394 ----LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp --------------------------------------------------------
T ss_pred ----ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHHh
Confidence 25799999999999985 444 456778899998887776555543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-36 Score=321.55 Aligned_cols=364 Identities=21% Similarity=0.230 Sum_probs=176.9
Q ss_pred cccEEEcCCCCCCCCc-CCcccCCCccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEc
Q 042944 218 SLEILKLGGNKLTGSL-PDITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDV 294 (637)
Q Consensus 218 ~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 294 (637)
+|++|++++|.+.... ..+..+++|++|++++|.+.+ ..+..|..+++|++|++++|.+....+. +..+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 6666666666666542 245666666666666666542 2345566666666666666666554333 334666666666
Q ss_pred cCCcCCCCChhh--hcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCC--CceeEEeccCC
Q 042944 295 SDSRLNGTVSEG--LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPP--FQLESIGLLHC 370 (637)
Q Consensus 295 ~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~~ 370 (637)
++|.+++..+.. +..+++|+.|++++|.+.+..+...+.++++|++|++++|.+....+..+..+ .+++.+++.+|
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 666665433333 55666666666666666654444345666666666666666655544444333 45666666666
Q ss_pred cCCCCccccc--------cCCCCccEEEeeCCCCCCccchhhhhcC--CCccEEECCCCcCCCcccccccCCCCCCeEeC
Q 042944 371 KLGPHFPKWL--------QSQKNYYFLDISDTEISDAVPSWFWDLS--PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDL 440 (637)
Q Consensus 371 ~~~~~~~~~l--------~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 440 (637)
.+....+.++ ..+++|+.|++++|.+.+..+..+.... ++|+.|++++|...+.... ...++.+...
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~-- 267 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNF-- 267 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTT--
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCccc--
Confidence 5544333221 2345555555555555554444443321 4555555555544321110 0000000000
Q ss_pred CCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcc
Q 042944 441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL 520 (637)
Q Consensus 441 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 520 (637)
.+ .....++|++|++++|++.+..+..... .++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 268 ---~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 337 (455)
T 3v47_A 268 ---TF---KGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS--- 337 (455)
T ss_dssp ---TT---GGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE---
T ss_pred ---cc---ccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC---
Confidence 00 0001234444444444444333322211 1445555555555544444444445555555555554431
Q ss_pred ccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc
Q 042944 521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI 600 (637)
Q Consensus 521 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 600 (637)
..|..+..+++|++|++++|.+++..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++++..
T Consensus 338 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 338 -----IDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp -----ECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred -----cChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 1123344444555555555555433333333 3455555555555554333333444455555555555554443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-35 Score=313.25 Aligned_cols=376 Identities=18% Similarity=0.167 Sum_probs=269.3
Q ss_pred EEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEE
Q 042944 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEIL 222 (637)
Q Consensus 144 ~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L 222 (637)
.++.+++.++ .+|. + .++|++|++++|.++.+ |..|.++++|++|++++|.+.+..+
T Consensus 14 ~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~----------------- 71 (455)
T 3v47_A 14 NAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR----------------- 71 (455)
T ss_dssp EEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred ccCcCCCCcc-cCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------
Confidence 4455555554 4544 1 14555555555555553 4445555555555555554431111
Q ss_pred EcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC-C--CCCCCCCCEEEccCCcC
Q 042944 223 KLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-D--LSVFPFLTRLDVSDSRL 299 (637)
Q Consensus 223 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~n~~ 299 (637)
...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+ . +..+++|++|++++|.+
T Consensus 72 ----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 141 (455)
T 3v47_A 72 ----------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141 (455)
T ss_dssp ----------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC
T ss_pred ----------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc
Confidence 1235566677777777777777778889999999999999999976322 2 55699999999999999
Q ss_pred CCCChhh-hcCCCCCCEEecCCCcCCCccchhhhcCC--CCCcEEEccCCcccccccCC--------CCCCCceeEEecc
Q 042944 300 NGTVSEG-LGRLSKLEFLDLFGNSLEGMITESHVSNL--SKLKYMDFSFNSLALNFSFG--------WLPPFQLESIGLL 368 (637)
Q Consensus 300 ~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~--------~~~~~~L~~L~l~ 368 (637)
.+..+.. +..+++|+.|++++|.+.+..+. .+..+ .+|+.+++++|.+....... +...++|++|+++
T Consensus 142 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred CccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 9876665 78999999999999999875443 45444 78999999999987655433 3356789999999
Q ss_pred CCcCCCCccccccC---CCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccccccc--CCCCCCeEeCCCC
Q 042944 369 HCKLGPHFPKWLQS---QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL--NYAGYPGIDLSSN 443 (637)
Q Consensus 369 ~~~~~~~~~~~l~~---~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n 443 (637)
+|.+....+..+.. .++|+.|++++|...+... ..+.+.+.....+. ..++|+.|++++|
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred CCcccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCcccccccccccCceEEEecCc
Confidence 99998877776644 3899999999987654321 11111111111111 2356777777777
Q ss_pred cCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcc
Q 042944 444 DFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL 520 (637)
Q Consensus 444 ~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 520 (637)
.+.+..+.. +++|++|++++|++.+..+.... ..++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 361 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--- 361 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE---
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc---
Confidence 776655443 56788888888888766554332 23899999999999998888999999999999999999872
Q ss_pred ccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCC
Q 042944 521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP 577 (637)
Q Consensus 521 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~ 577 (637)
..|..+..+++|++|++++|+++ .+|...+..+++|++|++++|+++...|
T Consensus 362 -----~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 362 -----LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -----ECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----cChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 34667889999999999999998 6776666679999999999999986665
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.6e-36 Score=312.27 Aligned_cols=357 Identities=22% Similarity=0.226 Sum_probs=193.0
Q ss_pred cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCC
Q 042944 111 MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL 190 (637)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L 190 (637)
++++++|++|++++|.+++. + .+..+ ++|++|++++|.++ .++ +..+++|++|++++|+++.++ ++++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l-~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKL-TGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGC-TTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhccc-CCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 44446666666666666543 2 34444 66666666666665 343 455666666666666666653 5566666
Q ss_pred cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEE
Q 042944 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN 270 (637)
Q Consensus 191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 270 (637)
++|++++|.+.+. + +..++ +|++|++++|.++.. .+..+++|++|++++|...+.. .+..+++|+.|+
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~-----~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNP-----LLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCT-----TCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CEEECCCCcCCee-c--CCCCC-----cCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 6666666665532 2 44444 555666655555532 2445555555555555322221 244445555555
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccc
Q 042944 271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL 350 (637)
Q Consensus 271 l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 350 (637)
+++|.+++.. +..+++|++|++++|.+++. .+..+++|+.|++++|.+++. + +..+++|+.|++++|
T Consensus 177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N---- 243 (457)
T 3bz5_A 177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVN---- 243 (457)
T ss_dssp CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSS----
T ss_pred CCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCC----
Confidence 5555544321 33344455555555444432 134444444444444444431 1 334444444444444
Q ss_pred cccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccccccc
Q 042944 351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL 430 (637)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 430 (637)
.+.+.. +..+++|+.|+++.| +|+++++++|.+.+..+ +.
T Consensus 244 --------------------~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 244 --------------------PLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp --------------------CCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CT
T ss_pred --------------------cCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--cc
Confidence 443321 334556666665443 45566666666655544 35
Q ss_pred CCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEec
Q 042944 431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNL 510 (637)
Q Consensus 431 ~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 510 (637)
.+++|+.|++++|...+..|....+|+.|++++| ++|++|++++|++++. + +..+++|+.|++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSC 346 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEEC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEEEC
Confidence 6677777777777766655555556666666555 5667777777776653 2 666677777777
Q ss_pred cCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccc
Q 042944 511 ANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL 580 (637)
Q Consensus 511 ~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l 580 (637)
++|++++ ++.|+.|++++|.+.+. + .+..|+.+++++|++++.+|..+
T Consensus 347 ~~N~l~~----------------l~~L~~L~l~~n~l~g~-~-----~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 347 VNAHIQD----------------FSSVGKIPALNNNFEAE-G-----QTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CSSCCCB----------------CTTGGGSSGGGTSEEEE-E-----EEEECCCBCCBTTBEEEECCTTC
T ss_pred CCCCCCC----------------ccccccccccCCcEEec-c-----eeeecCccccccCcEEEEcChhH
Confidence 7776651 23455556666666533 1 24455666666666666665543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-34 Score=301.28 Aligned_cols=344 Identities=23% Similarity=0.308 Sum_probs=172.7
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L 219 (637)
+++++|+++++.+. .++. +..+++|++|++++|.++.++. +.++++|++|++++|.+.+..+ +..++ +|
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----~L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-----NL 114 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-----TC
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-----CC
Confidence 33444444444443 3332 3444444444444444444433 4444444444444444442222 33333 44
Q ss_pred cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL 299 (637)
Q Consensus 220 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 299 (637)
++|++++|.+.... .+..+++|++|++++|.+.+. ..+..+++|+.|+++ +.+... ..+..+++|++|++++|.+
T Consensus 115 ~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 115 TGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-hhhccCCCCCEEECcCCcC
Confidence 44444444444322 244444555555555544432 124445555555543 222211 1233345555555555554
Q ss_pred CCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcccc
Q 042944 300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW 379 (637)
Q Consensus 300 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 379 (637)
.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--------------------------~~ 238 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--------------------------GT 238 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--------------------------GG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--------------------------hh
Confidence 432 124555556666666555554322 34455555555555544311 12
Q ss_pred ccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEE
Q 042944 380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL 459 (637)
Q Consensus 380 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L 459 (637)
+..+++|+.|++++|.+.+..+ +. .+++|++|++++|.+++..+ +..+++|+.|++++|++.+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~------------ 301 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED------------ 301 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC------------
T ss_pred hhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC------------
Confidence 3445555555555555554333 22 23556666666665554332 3444444444444444332
Q ss_pred EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944 460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI 539 (637)
Q Consensus 460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~ 539 (637)
..+ ....++|+.|++++|.+++..+ +..+++|+.|++++|++++ + ..+..+++|++
T Consensus 302 ---------~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~ 357 (466)
T 1o6v_A 302 ---------ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD---------V-SSLANLTNINW 357 (466)
T ss_dssp ---------CGG---GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC---------C-GGGTTCTTCCE
T ss_pred ---------chh---hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC---------c-hhhccCCCCCE
Confidence 221 1112667777777777765443 6677778888888887762 2 34667777888
Q ss_pred EEcCCCcccccCChhhhhcCCCCcEEeccCccccc
Q 042944 540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG 574 (637)
Q Consensus 540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~ 574 (637)
|++++|++++..| +. .+++|+.|++++|++++
T Consensus 358 L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC
T ss_pred EeCCCCccCccch--hh-cCCCCCEEeccCCcccC
Confidence 8888887774444 33 57888888888887774
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-34 Score=302.78 Aligned_cols=362 Identities=19% Similarity=0.201 Sum_probs=251.7
Q ss_pred hhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhh
Q 042944 130 SAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFL 209 (637)
Q Consensus 130 ~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~ 209 (637)
..+..+.++ ++|++|++++|.++ .+| .+..+++|++|++++|+++.+| ++.+++|++|++++|.+.+. + ++
T Consensus 33 ~~~~~~~~l-~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQL-ATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TSEEEHHHH-TTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ccccChhHc-CCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cC
Confidence 334446666 88899999988887 566 3788888889998888888875 77888888888888888754 2 56
Q ss_pred hcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCC
Q 042944 210 NLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFL 289 (637)
Q Consensus 210 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 289 (637)
.++ +|++|++++|.+... + +..+++|++|++++|.+++. .+..+++|++|++++|...+.. .+..+++|
T Consensus 104 ~l~-----~L~~L~L~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L 172 (457)
T 3bz5_A 104 PLT-----KLTYLNCDTNKLTKL-D-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQL 172 (457)
T ss_dssp TCT-----TCCEEECCSSCCSCC-C-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTC
T ss_pred CCC-----cCCEEECCCCcCCee-c-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcC
Confidence 666 788888888877753 2 66677777777777777653 2566666777777666433222 34445666
Q ss_pred CEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccC
Q 042944 290 TRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH 369 (637)
Q Consensus 290 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 369 (637)
++|++++|.+++. + +..+++|+.|++++|.+++. .+..+++|++|++++|.+
T Consensus 173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l--------------------- 224 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKL--------------------- 224 (457)
T ss_dssp CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCC---------------------
T ss_pred CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcc---------------------
Confidence 6666666665542 2 44555555555555555542 244444455555544444
Q ss_pred CcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC
Q 042944 370 CKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV 449 (637)
Q Consensus 370 ~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 449 (637)
.+ +| +..+++|+.|++++|.+.+..+. .+++|+.|++++| .|+.+++++|.+.+..
T Consensus 225 ---~~-ip--~~~l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 225 ---TE-ID--VTPLTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp ---SC-CC--CTTCTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred ---cc-cC--ccccCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence 33 23 56778889999999988875432 2378888888765 3566778888766655
Q ss_pred CCC-CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCC
Q 042944 450 PPV-PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIP 528 (637)
Q Consensus 450 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 528 (637)
|.. +++|++|++++|+..+.++. ..+.|+.|+++ .+++|+.|++++|+++ .++
T Consensus 281 ~~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~---------~l~ 334 (457)
T 3bz5_A 281 QAEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLS-------------QNPKLVYLYLNNTELT---------ELD 334 (457)
T ss_dssp ECTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCT-------------TCTTCCEEECTTCCCS---------CCC
T ss_pred cccccccCCEEECCCCcccceecc----CCCcceEechh-------------hcccCCEEECCCCccc---------ccc
Confidence 533 67888888888876554442 11445555444 4478999999999998 343
Q ss_pred ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccc
Q 042944 529 PSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN 605 (637)
Q Consensus 529 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~ 605 (637)
+..+++|+.|++++|++++ ++.|..|++++|.+.+. ..+..|+.+++++|.+++.+|..+.
T Consensus 335 --l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 335 --VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp --CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred --cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 7789999999999999983 35677788999999865 3567788999999999999988654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.6e-34 Score=300.82 Aligned_cols=342 Identities=22% Similarity=0.285 Sum_probs=253.3
Q ss_pred cccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCC
Q 042944 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDS 297 (637)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 297 (637)
+++.|++.++.+.. ++.+..+++|++|++++|.+++..+ +..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 47 ~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp TCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred cccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 89999999999885 4568888999999999999986544 8899999999999999986655 667999999999999
Q ss_pred cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcc
Q 042944 298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP 377 (637)
Q Consensus 298 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 377 (637)
.+++..+ +..+++|+.|++++|.+.+. + .+..+++|++|++++ .+... ..+..+++|+.|++++|.+...
T Consensus 123 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 123 QITDIDP--LKNLTNLNRLELSSNTISDI-S--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEEEEEEEECCC-G--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred CCCCChH--HcCCCCCCEEECCCCccCCC-h--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC--
Confidence 9886543 88899999999999988763 2 478899999999863 33322 2366778888888888887654
Q ss_pred ccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCC-CCCCc
Q 042944 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPP-VPGNV 456 (637)
Q Consensus 378 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L 456 (637)
..+..+++|++|++++|.+.+..+ + ..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+. .+++|
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--L-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred hhhccCCCCCEEEecCCccccccc--c-cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence 347788888888888888877655 2 2357888888888888754 3467778888888888887765542 25677
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE 536 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~ 536 (637)
++|++++|++.+..+ ....++|+.|++++|.+++..+ +..+++|+.|++++|++++. +. +..+++
T Consensus 268 ~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---------~~-~~~l~~ 332 (466)
T 1o6v_A 268 TELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---------SP-VSSLTK 332 (466)
T ss_dssp SEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC---------GG-GGGCTT
T ss_pred CEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc---------hh-hccCcc
Confidence 777777777766544 2223777777777777764333 66777777777777777632 22 456777
Q ss_pred CcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944 537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 598 (637)
|++|++++|.++ .++ .+. .+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 333 L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 333 LQRLFFYNNKVS-DVS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCC-CCG-GGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEeECCCCccC-Cch-hhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 777777777776 333 343 57777777777777775544 6777777777777777764
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-32 Score=274.04 Aligned_cols=307 Identities=22% Similarity=0.316 Sum_probs=224.1
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN 163 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~ 163 (637)
+..+++|++|+++++.+.++ +++..+++|++|++++|.+++..+ +..+ ++|++|++++|.++ .++. +.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n~i~-~~~~--~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTNKIT-DISA--LQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC-CCGG--GTT
T ss_pred chhcccccEEEEeCCccccc-----hhhhhcCCccEEEccCCccccchh--hhcC-CcCCEEEccCCccc-CchH--HcC
Confidence 56788999999999998876 346778999999999999886554 5555 99999999999988 6764 889
Q ss_pred CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCcc
Q 042944 164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ 243 (637)
Q Consensus 164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 243 (637)
+++|++|++++|.+..++. +..+++|++|++++|...... ..+..++ +|++|++++|.+....+ +..+++|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~-----~L~~L~l~~~~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMT-----GLNYLTVTESKVKDVTP-IANLTDLY 180 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCT-----TCCEEECCSSCCCCCGG-GGGCTTCS
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCC-----CCcEEEecCCCcCCchh-hccCCCCC
Confidence 9999999999999998866 889999999999999655333 3477777 88999998888875443 77788888
Q ss_pred EEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcC
Q 042944 244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323 (637)
Q Consensus 244 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 323 (637)
+|++++|.+.+..+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 88888888775433 6777788888888877764433 5557777777777777765433 66777777777777776
Q ss_pred CCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchh
Q 042944 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW 403 (637)
Q Consensus 324 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 403 (637)
.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+..
T Consensus 256 ~~~---~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 256 SDI---NAVKDLTKLKMLNVGSNQISDI--------------------------SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCC---GGGTTCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCC---hhHhcCCCcCEEEccCCccCCC--------------------------hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 653 2466667777777776665532 23556667777777777776655555
Q ss_pred hhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCc
Q 042944 404 FWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFE 446 (637)
Q Consensus 404 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~ 446 (637)
+... ++|++|++++|++++..+ +..+++|+.|++++|.++
T Consensus 307 l~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGL-TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTC-TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhcc-ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5543 677777777777766555 566777777777777654
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=271.60 Aligned_cols=306 Identities=22% Similarity=0.325 Sum_probs=222.9
Q ss_pred cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCC
Q 042944 111 MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL 190 (637)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L 190 (637)
+..+++|++|+++++.+.... .+..+ ++|++|++++|.++ .++. +..+++|++|++++|.++.++ .+.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~-~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ--GIEYL-TNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred chhcccccEEEEeCCccccch--hhhhc-CCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence 344588888888888887543 25555 88888888888887 6766 788888888888888888875 58888888
Q ss_pred cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEE
Q 042944 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN 270 (637)
Q Consensus 191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 270 (637)
++|++++|.+.+..+ +..++ +|++|++++|.....++.+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~-----~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLT-----KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCT-----TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CEEECcCCcccCchh--hccCC-----ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 888888888874433 66666 8888888888655566667777778888887777764432 66667777777
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccc
Q 042944 271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL 350 (637)
Q Consensus 271 l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 350 (637)
+++|.+....+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~- 256 (347)
T 4fmz_A 184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQIS- 256 (347)
T ss_dssp CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC-
T ss_pred ccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccC-
Confidence 77776654333 4446666666666666654333 5556666666666666654321 555555666665555543
Q ss_pred cccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccccccc
Q 042944 351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL 430 (637)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 430 (637)
.. ..+..+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++..+..+.
T Consensus 257 -----------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 257 -----------------------DI--NAVKDLTKLKMLNVGSNQISDI--SVL-NNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp -----------------------CC--GGGTTCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred -----------------------CC--hhHhcCCCcCEEEccCCccCCC--hhh-cCCCCCCEEECcCCcCCCcChhHhh
Confidence 22 4577889999999999999875 233 3458999999999999998889899
Q ss_pred CCCCCCeEeCCCCcCcCCCCC-CCCCccEEEccccccc
Q 042944 431 NYAGYPGIDLSSNDFEGPVPP-VPGNVTSLNLSNNKFS 467 (637)
Q Consensus 431 ~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~L~~n~l~ 467 (637)
.+++|+.|++++|++++..+. .+++|++|++++|+++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 999999999999999987763 3889999999999875
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=289.73 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=238.6
Q ss_pred ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCC
Q 042944 242 LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320 (637)
Q Consensus 242 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 320 (637)
-+.++.+++.++. .|..+ .+.++.|++++|.+....+. +..+++|++|++++|.+.+..+..+.++++|+.|++++
T Consensus 13 ~~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 3567777777763 34433 35788888888888776543 44588888888888888877777888888888888888
Q ss_pred CcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc
Q 042944 321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV 400 (637)
Q Consensus 321 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 400 (637)
|.+.. .+...+.++++|++|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..
T Consensus 90 n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88876 34446778888888888888887777777777777888888877777666667777777777777777777655
Q ss_pred chhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCC
Q 042944 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEY 480 (637)
Q Consensus 401 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 480 (637)
+..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|... +..+...... .+
T Consensus 169 ~~~l~~-l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~~-~~ 225 (477)
T 2id5_A 169 TEALSH-LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL---------------------DTMTPNCLYG-LN 225 (477)
T ss_dssp HHHHTT-CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC---------------------CEECTTTTTT-CC
T ss_pred hhHhcc-cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc---------------------cccCcccccC-cc
Confidence 544444 367777777777776655555555555555555555433 2222222211 57
Q ss_pred ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944 481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560 (637)
Q Consensus 481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~ 560 (637)
|+.|++++|.++...+..+..+++|+.|++++|.+++ ..+..+..+++|++|++++|.+++..|..+. .++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~ 296 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFR-GLN 296 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--------ECTTSCTTCTTCCEEECCSSCCSEECTTTBT-TCT
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--------cChhhccccccCCEEECCCCccceECHHHhc-Ccc
Confidence 8888888888886555788999999999999999883 2334578899999999999999865565555 799
Q ss_pred CCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
+|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999966666788899999999999999754
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-32 Score=280.66 Aligned_cols=311 Identities=18% Similarity=0.157 Sum_probs=221.5
Q ss_pred cCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEE
Q 042944 238 EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFL 316 (637)
Q Consensus 238 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 316 (637)
.+++++.|+++++.++...+..+..+++|++|++++|.+....+ .+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34577777777777765555556667777777777777665544 34446677777777776666656666666667777
Q ss_pred ecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCC
Q 042944 317 DLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEI 396 (637)
Q Consensus 317 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i 396 (637)
++++|.+.. .+...+.++++|++|++++|.+... .+..+..+++|++|++++|.+
T Consensus 123 ~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERI------------------------EDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBC------------------------CTTTTSSCTTCCEEECCSSCC
T ss_pred ECCCCccCc-CCHHHhcCCCCCcEEECCCCccCcc------------------------ChhhccCCCCCCEEECCCCcC
Confidence 776666664 3333456666666666666665533 344455566666666666666
Q ss_pred CCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccc
Q 042944 397 SDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSI 476 (637)
Q Consensus 397 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 476 (637)
.+.... .+++|+++++++|.+++. ...+.|+.|++++|.+.......+++|++|++++|++++. +. ..
T Consensus 178 ~~~~~~----~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~--l~ 245 (390)
T 3o6n_A 178 THVDLS----LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AW--LL 245 (390)
T ss_dssp SBCCGG----GCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GG--GG
T ss_pred Cccccc----cccccceeeccccccccc-----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HH--Hc
Confidence 554221 236777777777766532 2334677777777777666555567888888888888764 22 22
Q ss_pred cCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhh
Q 042944 477 SGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG 556 (637)
Q Consensus 477 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 556 (637)
..++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.++ .+|..+.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC---------EEECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc---------ccCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 3389999999999999888899999999999999999988 55666678899999999999998 7887777
Q ss_pred hcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 557 DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 557 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
.+++|++|++++|+++ .++ +..+++|+.|++++|++...
T Consensus 316 -~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 316 -QFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -HHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred -ccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccch
Confidence 5899999999999998 444 67889999999999999864
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-32 Score=280.04 Aligned_cols=310 Identities=16% Similarity=0.179 Sum_probs=252.4
Q ss_pred CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEE
Q 042944 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI 365 (637)
Q Consensus 286 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 365 (637)
+++++.|+++++.++...+..+..+++|+.|++++|.+.+. +...+.++++|++|++++|.+....+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 56677777777777755555567777788888877777653 33367777788888888887777666677777888888
Q ss_pred eccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC
Q 042944 366 GLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF 445 (637)
Q Consensus 366 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 445 (637)
++++|.+....+..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++.. +..+++|+.+++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS-CTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC-CCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 88888877555566789999999999999998877666655 489999999999998653 56789999999999998
Q ss_pred cCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccc
Q 042944 446 EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVG 525 (637)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 525 (637)
.+.. .+++|++|++++|++....... .++|+.|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 199 ~~~~--~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-------- 262 (390)
T 3o6n_A 199 STLA--IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK-------- 262 (390)
T ss_dssp SEEE--CCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE--------
T ss_pred cccC--CCCcceEEECCCCeeeeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC--------
Confidence 7642 3568999999999987653322 28999999999999853 578999999999999999883
Q ss_pred cCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccc
Q 042944 526 EIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN 605 (637)
Q Consensus 526 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~ 605 (637)
..|..+..+++|++|++++|.++ .++.... .+++|++|++++|+++ .+|..+..+++|+.|++++|++++. | +.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred cChhHccccccCCEEECCCCcCc-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence 34677889999999999999998 5666554 6999999999999998 6788889999999999999999844 4 78
Q ss_pred ccccceeeccCCCeeEE
Q 042944 606 NLTAMVEKASSNSTITH 622 (637)
Q Consensus 606 ~l~~L~~l~l~~n~l~~ 622 (637)
.+++|++|++++|+++.
T Consensus 337 ~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCCSEEECCSSCEEH
T ss_pred hhccCCEEEcCCCCccc
Confidence 89999999999999864
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=283.42 Aligned_cols=318 Identities=21% Similarity=0.197 Sum_probs=197.0
Q ss_pred CcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCccc
Q 042944 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220 (637)
Q Consensus 142 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~ 220 (637)
-+.++.+++.++ .+|. .+ .+++++|++++|+++.+ +..|.++++|++|++++|.+.+..|..|.+++ +|+
T Consensus 13 ~~~v~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLR 83 (477)
T ss_dssp TTEEECCSCCCS-SCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCC
T ss_pred CCEEEeCCCCcC-cCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCC
Confidence 457888888887 7877 23 35788999999988886 56788888999999988888877778888777 888
Q ss_pred EEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCc
Q 042944 221 ILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSR 298 (637)
Q Consensus 221 ~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~ 298 (637)
+|++++|.+...++. +..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+. +..+++|++|++++|.
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 888888887765543 56677777777777777766666666777777777776666544332 3335566666666665
Q ss_pred CCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccc
Q 042944 299 LNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPK 378 (637)
Q Consensus 299 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 378 (637)
+++..+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++| ......+.
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~------------------------~~~~~~~~ 218 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHW------------------------PYLDTMTP 218 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECC------------------------TTCCEECT
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCC------------------------ccccccCc
Confidence 5554444555555555555555555442 2223444455555555444 43333444
Q ss_pred cccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccE
Q 042944 379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458 (637)
Q Consensus 379 ~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~ 458 (637)
......+|+.|++++|.+....+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+.
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---- 293 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---- 293 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT----
T ss_pred ccccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc----
Confidence 4444456777777777766544333333 36777777777777665555556666666666666555543332211
Q ss_pred EEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCC
Q 042944 459 LNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS 516 (637)
Q Consensus 459 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 516 (637)
..++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 294 ------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 294 ------------------GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ------------------TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ------------------CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 1145555555555555444445555556666666666554
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.5e-31 Score=289.10 Aligned_cols=310 Identities=18% Similarity=0.155 Sum_probs=215.7
Q ss_pred CCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEe
Q 042944 239 FSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317 (637)
Q Consensus 239 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 317 (637)
+.+++.+++++|.+....+..+..+++|+.|++++|.+....+ .+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 3456666666666654444445555666666666665554443 233355555555555555555555555555555555
Q ss_pred cCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCC
Q 042944 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS 397 (637)
Q Consensus 318 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 397 (637)
+++|.+.+ .+...+.++++|++|++++|.+ ....+..+..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l------------------------~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNNL------------------------ERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CCSSCCCC-CCTTTTTTCTTCCEEECCSSCC------------------------CBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eeCCCCCC-CCHHHhccCCCCCEEEeeCCcC------------------------CCCChhhhhcCCcCcEEECcCCCCC
Confidence 55555553 2222345555555555555544 4444555666677777777777766
Q ss_pred CccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCccccccccc
Q 042944 398 DAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSIS 477 (637)
Q Consensus 398 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 477 (637)
+.... .+++|+.|++++|.+++ +...+.|+.|++++|.+....+..+++|+.|++++|.+++. +. ...
T Consensus 185 ~~~~~----~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~--l~~ 252 (597)
T 3oja_B 185 HVDLS----LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AW--LLN 252 (597)
T ss_dssp BCCGG----GCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GG--GGG
T ss_pred CcChh----hhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hh--hcc
Confidence 54322 23677778887777653 23445788888888887766666677899999999988764 22 223
Q ss_pred CCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944 478 GEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557 (637)
Q Consensus 478 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 557 (637)
.++|+.|++++|.+++..|..|..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~- 321 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP- 321 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC---------EEECSSSCCTTCCEEECCSSCCC-CCGGGHH-
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC---------CCCcccccCCCCcEEECCCCCCC-ccCcccc-
Confidence 389999999999999888999999999999999999998 56666778899999999999998 8888887
Q ss_pred cCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 558 TLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 558 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
.+++|+.|+|++|++++ ++ +..+++|+.|++++|++.+.
T Consensus 322 ~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence 69999999999999984 43 67789999999999999754
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.7e-31 Score=287.78 Aligned_cols=309 Identities=16% Similarity=0.176 Sum_probs=256.2
Q ss_pred CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEE
Q 042944 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI 365 (637)
Q Consensus 286 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 365 (637)
+.+++.+++++|.+....+..+..+++|+.|++++|.+.+. +...+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56677777777777766666677778888888888877763 33367778888888888888877777777778888888
Q ss_pred eccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC
Q 042944 366 GLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF 445 (637)
Q Consensus 366 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~ 445 (637)
++++|.+....+..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 888888876666667899999999999999998777777654 89999999999998753 56788999999999998
Q ss_pred cCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccc
Q 042944 446 EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVG 525 (637)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 525 (637)
.+.. .+.+|++|++++|.+........ ++|+.|++++|.+++ +..+..+++|+.|++++|.+.+
T Consensus 205 ~~l~--~~~~L~~L~ls~n~l~~~~~~~~----~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-------- 268 (597)
T 3oja_B 205 STLA--IPIAVEELDASHNSINVVRGPVN----VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-------- 268 (597)
T ss_dssp SEEE--CCTTCSEEECCSSCCCEEECSCC----SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE--------
T ss_pred cccc--CCchhheeeccCCcccccccccC----CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC--------
Confidence 7643 35689999999999876543322 789999999999985 4779999999999999999883
Q ss_pred cCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccc
Q 042944 526 EIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN 605 (637)
Q Consensus 526 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~ 605 (637)
..|..+..+++|++|++++|.++ .+|..+. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++. | +.
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~ 342 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 342 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred CCHHHhcCccCCCEEECCCCCCC-CCCcccc-cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hh
Confidence 45677889999999999999998 5676665 6999999999999999 7888899999999999999999854 3 78
Q ss_pred ccccceeeccCCCeeE
Q 042944 606 NLTAMVEKASSNSTIT 621 (637)
Q Consensus 606 ~l~~L~~l~l~~n~l~ 621 (637)
.+++|+.|++++|++.
T Consensus 343 ~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 343 THHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCCSEEECCSSCEE
T ss_pred hcCCCCEEEeeCCCCC
Confidence 8899999999999986
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.2e-33 Score=296.71 Aligned_cols=353 Identities=20% Similarity=0.199 Sum_probs=185.8
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCC----CCCchhccCCCCCCEEEcCCCcccch--hhhcCCCC
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG----PIPDYAFSNMTALQHLNLSLNQISAI--SKSFGNMC 188 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~----~l~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~l~ 188 (637)
++|++|++++|.+++.....++..+++|++|++++|.+.+ .++. .+..+++|++|++++|.+.+. ...+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 6799999999999877766655555999999999999872 1233 577889999999999988772 22233344
Q ss_pred ----CCcEEEcCCCcCCCC----chhHhhhcccCCCCcccEEEcCCCCCCCCcC-Cc-----ccCCCccEEEccCCcCCC
Q 042944 189 ----GLKTLHLFDNNLTGQ----LPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DI-----TEFSSLQELHLFDNKLDG 254 (637)
Q Consensus 189 ----~L~~L~l~~n~i~~~----~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~-----~~~~~L~~L~l~~n~i~~ 254 (637)
+|++|++++|.+... .+..+..++ +|++|++++|.+..... .+ ...++|++|++++|.+++
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-----TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCT-----TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCC-----ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 799999999988743 356666666 88888888877653211 11 113356666666666554
Q ss_pred CC----CCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhc-----CCCCCCEEecCCCcCCC
Q 042944 255 SF----PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLG-----RLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 255 ~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~ 325 (637)
.. +..+..+++|++|++++|.+ .+..+..+. ..++|+.|++++|.+.+
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i-----------------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDI-----------------------NEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBC-----------------------HHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCc-----------------------chHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 22 22233344455555554444 322221111 23355555555555443
Q ss_pred cc---chhhhcCCCCCcEEEccCCccccccc-----CCCCCCCceeEEeccCCcCCCC----ccccccCCCCccEEEeeC
Q 042944 326 MI---TESHVSNLSKLKYMDFSFNSLALNFS-----FGWLPPFQLESIGLLHCKLGPH----FPKWLQSQKNYYFLDISD 393 (637)
Q Consensus 326 ~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~ 393 (637)
.. ....+..+++|++|++++|.+..... ..+..+++|++|++++|.++.. ++..+..+++|++|++++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 21 01133445555555555555442211 0111223333333333333321 234444556666666666
Q ss_pred CCCCCccchhhhhc----CCCccEEECCCCcCCCcc----cccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccccc
Q 042944 394 TEISDAVPSWFWDL----SPNLYYLNLSHNHLEGTV----LDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNK 465 (637)
Q Consensus 394 n~i~~~~~~~~~~~----~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~ 465 (637)
|.+.+..+..+... .++|++|++++|.+++.. +..+..++ +|++|++++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~---------------------~L~~L~Ls~n~ 352 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR---------------------FLLELQISNNR 352 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS---------------------SCCEEECCSSB
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC---------------------CccEEEccCCc
Confidence 65554433333322 135555555555554321 22222233 33333333333
Q ss_pred ccCccccccc----ccCCCccEEeCCCCCCcc----cCchhhhccCCCcEEeccCccCCC
Q 042944 466 FSGPISSLCS----ISGEYFSYLDVSDNLLSG----ELPDCLLRWQALAVLNLANNNFSG 517 (637)
Q Consensus 466 l~~~~~~~~~----~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~ 517 (637)
+++....... ...++|++|++++|.+++ .++..+..+++|++|++++|++++
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3322111110 001456666666666554 445555556666666666666554
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-28 Score=246.94 Aligned_cols=289 Identities=18% Similarity=0.181 Sum_probs=170.2
Q ss_pred CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344 (637)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 344 (637)
+++.++++++.+...+..+ .+.++.|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECC
Confidence 3445555555444332222 24556666666666555444555666666666666665543222 45556666666666
Q ss_pred CCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC-
Q 042944 345 FNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG- 423 (637)
Q Consensus 345 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~- 423 (637)
+|.++.. |..+. ++|++|++++|.+.+..+..+.. +++|++|++++|.+..
T Consensus 109 ~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 109 KNQLKEL-------------------------PEKMP--KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSS 160 (330)
T ss_dssp SSCCSBC-------------------------CSSCC--TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSCCCGG
T ss_pred CCcCCcc-------------------------Chhhc--ccccEEECCCCcccccCHhHhcC-CccccEEECCCCcCCcc
Confidence 6555421 11111 45555555555555444433333 2566666666665542
Q ss_pred -cccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc
Q 042944 424 -TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW 502 (637)
Q Consensus 424 -~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 502 (637)
..+..+..+++|+.|++++|.+.......+ ++|++|++++|.+++..+..+..+
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLP-------------------------PSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-------------------------TTCSEEECTTSCCCEECTGGGTTC
T ss_pred CcChhhccCCCCcCEEECCCCccccCCcccc-------------------------ccCCEEECCCCcCCccCHHHhcCC
Confidence 334445555555555555555543222112 456666666666666666777777
Q ss_pred CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccC
Q 042944 503 QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR 582 (637)
Q Consensus 503 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~ 582 (637)
++|+.|++++|.+++ ..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|++++..+..|..
T Consensus 216 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 216 NNLAKLGLSFNSISA--------VDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp TTCCEEECCSSCCCE--------ECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred CCCCEEECCCCcCce--------eChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCC
Confidence 788888888887762 22335667777888888888876 7777666 5788888888888877544444433
Q ss_pred ------CCCCcEeeCCCCcccc--cccccccccccceeeccCCCe
Q 042944 583 ------LSKIQLLDFSLNSISG--AIPKCINNLTAMVEKASSNST 619 (637)
Q Consensus 583 ------l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~l~l~~n~ 619 (637)
.++++.|++++|++.. ..|..|..++.++.++++||+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3678888888888863 556788888889999988885
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-32 Score=290.06 Aligned_cols=356 Identities=19% Similarity=0.174 Sum_probs=213.4
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh----hhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA----YHWLFKISSNLLALDLNSNQLAGPIPDYAFSN 163 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~ 163 (637)
+++++|+++++.+++... ...+..+++|++|++++|.+++.. +..+..+ ++|++|++++|.+.+..+...+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARW--AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHH--HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccCchhH--HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHH
Confidence 456777777776665431 112444567777777777766433 2223333 677777777776652222212233
Q ss_pred CC----CCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC--
Q 042944 164 MT----ALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-- 232 (637)
Q Consensus 164 l~----~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-- 232 (637)
++ +|++|++++|+++. ++..+..+++|++|++++|.+.+..+..+...-....++|++|++++|.++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 44 57777777777663 45666777777777777777654444444331101112577777777766532
Q ss_pred ---cCCcccCCCccEEEccCCcCCCCCCCcCC-----CCCCCcEEEcCCCCCCCC-----CCCCCCCCCCCEEEccCCcC
Q 042944 233 ---LPDITEFSSLQELHLFDNKLDGSFPEKFR-----KPSPLVILNLDGNQLWGS-----LPDLSVFPFLTRLDVSDSRL 299 (637)
Q Consensus 233 ---~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~ 299 (637)
...+..+++|++|++++|.+++..+..+. ..++|++|++++|.+... ...+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 12244556777777777776543333232 245777777777776542 12233367777777777776
Q ss_pred CCCC-----hhhhcCCCCCCEEecCCCcCCCcc---chhhhcCCCCCcEEEccCCcccccccCCC-----CCCCceeEEe
Q 042944 300 NGTV-----SEGLGRLSKLEFLDLFGNSLEGMI---TESHVSNLSKLKYMDFSFNSLALNFSFGW-----LPPFQLESIG 366 (637)
Q Consensus 300 ~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~ 366 (637)
++.. +..+..+++|+.|++++|.+++.. ....+..+++|++|++++|.+.......+ ...++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 6432 122235677888888887776532 12245567778888888877754332221 2235677777
Q ss_pred ccCCcCCCC----ccccccCCCCccEEEeeCCCCCCccchhhhhc----CCCccEEECCCCcCCC----cccccccCCCC
Q 042944 367 LLHCKLGPH----FPKWLQSQKNYYFLDISDTEISDAVPSWFWDL----SPNLYYLNLSHNHLEG----TVLDLSLNYAG 434 (637)
Q Consensus 367 l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~l~~n~i~~----~~~~~~~~~~~ 434 (637)
+++|.++.. ++.++..+++|++|++++|.+.+..+..+... .++|++|++++|.+++ ..+..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 777776554 45566777888888888888877666555432 3588888888888875 55566666777
Q ss_pred CCeEeCCCCcCc
Q 042944 435 YPGIDLSSNDFE 446 (637)
Q Consensus 435 L~~L~l~~n~~~ 446 (637)
|++|++++|+++
T Consensus 400 L~~L~l~~N~i~ 411 (461)
T 1z7x_W 400 LRELDLSNNCLG 411 (461)
T ss_dssp CCEEECCSSSCC
T ss_pred ccEEECCCCCCC
Confidence 777777777665
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.9e-29 Score=248.68 Aligned_cols=288 Identities=20% Similarity=0.195 Sum_probs=166.0
Q ss_pred CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344 (637)
Q Consensus 265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 344 (637)
+++.++++++.+...+..+ .+++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECC
Confidence 4555555555554333222 2455556666665554444455555666666666665554322 245555555555555
Q ss_pred CCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC-
Q 042944 345 FNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG- 423 (637)
Q Consensus 345 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~- 423 (637)
+|.+... |..+. ++|++|++++|.+....+..+.. +++|++|++++|.++.
T Consensus 111 ~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 111 KNHLVEI-------------------------PPNLP--SSLVELRIHDNRIRKVPKGVFSG-LRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SSCCCSC-------------------------CSSCC--TTCCEEECCSSCCCCCCSGGGSS-CSSCCEEECCSCCCBGG
T ss_pred CCcCCcc-------------------------Ccccc--ccCCEEECCCCccCccCHhHhCC-CccCCEEECCCCccccC
Confidence 5554421 11111 34444444444444333222222 2444444444444431
Q ss_pred -cccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc
Q 042944 424 -TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW 502 (637)
Q Consensus 424 -~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 502 (637)
..+..+..+ +|+.|++++|. +++...... ++|++|++++|.+++..+..+..+
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~---------------------l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAK---------------------LTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSB---------------------CSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred CCCcccccCC-ccCEEECcCCC---------------------CCccCcccc----CCCCEEECCCCcCCccCHHHhcCC
Confidence 222222222 44444444444 433221111 566777777777776666778888
Q ss_pred CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccC
Q 042944 503 QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR 582 (637)
Q Consensus 503 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~ 582 (637)
++|+.|++++|.+.+ ..+..+..+++|++|++++|.++ .+|..+. .+++|+.|++++|++++..+..|..
T Consensus 217 ~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRM--------IENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp TTCSCCBCCSSCCCC--------CCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CCCCEEECCCCcCCc--------CChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhHccc
Confidence 888888888888773 22335677888888888888887 7887766 5888888888888888555555544
Q ss_pred ------CCCCcEeeCCCCccc--ccccccccccccceeeccCCCe
Q 042944 583 ------LSKIQLLDFSLNSIS--GAIPKCINNLTAMVEKASSNST 619 (637)
Q Consensus 583 ------l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~l~l~~n~ 619 (637)
.++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367888999999887 5677888889999999998875
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.1e-28 Score=248.47 Aligned_cols=248 Identities=18% Similarity=0.204 Sum_probs=180.8
Q ss_pred CCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEE
Q 042944 336 SKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLN 415 (637)
Q Consensus 336 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 415 (637)
++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..... .+ .++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~---~~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NL---PSSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-SC---CTTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc-cc---cccCCEEE
Confidence 445555555555554444445555555555555555555556777888888888888888775333 22 26888888
Q ss_pred CCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccC
Q 042944 416 LSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGEL 495 (637)
Q Consensus 416 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 495 (637)
+++|.+++..+..+..+++|+.|++++|.+... +..+.... . .+|+.|++++|.+++ +
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~-~-l~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------------GFEPGAFD-G-LKLNYLRISEAKLTG-I 187 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------------GSCTTSSC-S-CCCSCCBCCSSBCSS-C
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccC-------------------CCCccccc-C-CccCEEECcCCCCCc-c
Confidence 888888776666667777777666666665421 01111111 1 378999999999985 5
Q ss_pred chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944 496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575 (637)
Q Consensus 496 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~ 575 (637)
|..+. ++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~--------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQA--------IELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCC--------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-B
T ss_pred Ccccc--CCCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-e
Confidence 55443 799999999999983 2345688899999999999999844444454 7999999999999999 8
Q ss_pred CCccccCCCCCcEeeCCCCcccccccccccc------cccceeeccCCCeeE
Q 042944 576 IPRNLCRLSKIQLLDFSLNSISGAIPKCINN------LTAMVEKASSNSTIT 621 (637)
Q Consensus 576 ~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~------l~~L~~l~l~~n~l~ 621 (637)
+|..+..+++|+.|++++|++++..+..|.. .++|+.+++++|++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 8999999999999999999999777777765 467999999999986
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.2e-28 Score=244.79 Aligned_cols=249 Identities=17% Similarity=0.159 Sum_probs=180.5
Q ss_pred CCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEEC
Q 042944 337 KLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNL 416 (637)
Q Consensus 337 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l 416 (637)
+++.|++++|.++......+..+++|++|++++|.+....|..+..+++|++|++++|.+... +..+ .++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~---~~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM---PKTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC---CTTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh---cccccEEEC
Confidence 344444444444433333444444455555555555445567778888888888888888753 3322 268899999
Q ss_pred CCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCc
Q 042944 417 SHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP 496 (637)
Q Consensus 417 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 496 (637)
++|.+++..+..+..+++|+.|++++|.+.... ..+ ......++|++|++++|.++. +|
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~-~~~~~l~~L~~L~l~~n~l~~-l~ 187 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------IEN-GAFQGMKKLSYIRIADTNITT-IP 187 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------BCT-TGGGGCTTCCEEECCSSCCCS-CC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccC-------------------cCh-hhccCCCCcCEEECCCCcccc-CC
Confidence 999888777777777887777777777664210 111 111122778888888888874 45
Q ss_pred hhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccC
Q 042944 497 DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI 576 (637)
Q Consensus 497 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~ 576 (637)
..+. ++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .+
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITK--------VDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCE--------ECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SC
T ss_pred cccc--ccCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cC
Confidence 4443 899999999999883 3356788999999999999999855454555 6999999999999999 88
Q ss_pred CccccCCCCCcEeeCCCCcccccccccccc------cccceeeccCCCeeEE
Q 042944 577 PRNLCRLSKIQLLDFSLNSISGAIPKCINN------LTAMVEKASSNSTITH 622 (637)
Q Consensus 577 ~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~------l~~L~~l~l~~n~l~~ 622 (637)
|..+..+++|++|++++|++++..+..|.. .+.|+.+++++|++..
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 999999999999999999999777777754 4789999999999864
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.1e-30 Score=285.25 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=135.9
Q ss_pred hcCCCCCcEEEcCCCCCCC---CCc--------cccccc-CCCCCccEEECCCCCCCchhhhHHHhhcCC-CcEEECCCC
Q 042944 84 ITSLASLRDLYLASSTLLS---INR--------PSLSSM-NSSTSLTLLDLSSCGLSNSAYHWLFKISSN-LLALDLNSN 150 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~---~~~--------~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~-L~~L~L~~n 150 (637)
+..+++|++|+++++.... ..+ .++..+ ..+++|++|+|++|.+++..+..+...+++ |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 5678899999998864321 111 011111 157889999998888887776666664466 899998887
Q ss_pred CC-CC-CCCchhccCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCC----chhHhhhcccCCCCcc
Q 042944 151 QL-AG-PIPDYAFSNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQ----LPELFLNLSGCSKNSL 219 (637)
Q Consensus 151 ~l-~~-~l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~~~~~~L 219 (637)
.. .. .++. ...++++|++|++++|.+.+ ++..+.++++|++|++++|.+.+. .+..+..++ +|
T Consensus 149 ~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-----~L 222 (592)
T 3ogk_B 149 SGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-----SL 222 (592)
T ss_dssp EEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-----TC
T ss_pred CCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-----CC
Confidence 62 10 1111 23478888888888887654 334556778888888888887633 233444555 78
Q ss_pred cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCC---CCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccC
Q 042944 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD---GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD 296 (637)
Q Consensus 220 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 296 (637)
++|++++|.+...+..+..+++|++|++++.... ......+..+++|+.++++++...
T Consensus 223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------------- 283 (592)
T 3ogk_B 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN------------------- 283 (592)
T ss_dssp CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------------------
T ss_pred cEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------------------
Confidence 8888888776655545666777777777653221 112223344444444444443222
Q ss_pred CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344 (637)
Q Consensus 297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 344 (637)
..+..+..+++|+.|++++|.+.+......+..+++|++|+++
T Consensus 284 -----~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 284 -----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp -----TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred -----HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 3334444555555555555554433222234555566666555
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.1e-28 Score=245.59 Aligned_cols=248 Identities=24% Similarity=0.413 Sum_probs=193.8
Q ss_pred CceeEEeccCCcCCC--CccccccCCCCccEEEeeC-CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCC
Q 042944 360 FQLESIGLLHCKLGP--HFPKWLQSQKNYYFLDISD-TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYP 436 (637)
Q Consensus 360 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 436 (637)
.+++.|++++|.+.+ ..|..+..+++|++|++++ |.+.+..|..+... ++|++|++++|.+++..+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666665 5666777777777777774 67766666666554 6777777777777766777777777777
Q ss_pred eEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCc
Q 042944 437 GIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANN 513 (637)
Q Consensus 437 ~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 513 (637)
+|++++|.+.+..|.. +++|++|++++|++++..+.......+.|++|++++|.+++..|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 7777777777655543 567788888888877655554443324899999999999888888898887 999999999
Q ss_pred cCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCC
Q 042944 514 NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL 593 (637)
Q Consensus 514 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~ 593 (637)
.+++ ..|..+..+++|++|++++|.+++.++. +. .+++|++|++++|++++.+|..+..+++|++|++++
T Consensus 208 ~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 208 MLEG--------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp EEEE--------CCGGGCCTTSCCSEEECCSSEECCBGGG-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred cccC--------cCCHHHhcCCCCCEEECCCCceeeecCc-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 9873 4566788899999999999999855554 44 689999999999999988999999999999999999
Q ss_pred CcccccccccccccccceeeccCCCee
Q 042944 594 NSISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 594 n~l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
|++++.+|.. ..+++|+.+++++|+.
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred CcccccCCCC-ccccccChHHhcCCCC
Confidence 9999888876 8899999999999973
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.1e-29 Score=277.34 Aligned_cols=302 Identities=13% Similarity=-0.004 Sum_probs=173.7
Q ss_pred cCCCCCccEEECCCCCCC-----------c---hhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC-CCC-CCEEEcCC
Q 042944 111 MNSSTSLTLLDLSSCGLS-----------N---SAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN-MTA-LQHLNLSL 174 (637)
Q Consensus 111 l~~l~~L~~L~L~~n~i~-----------~---~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~-l~~-L~~L~L~~ 174 (637)
+..+++|++|+++++... + .....+...+++|++|++++|.+++.... .+.. ++. |++|++++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEEES
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEECcC
Confidence 445688999999775321 0 11223343448888888888877633222 3433 334 88888888
Q ss_pred Cc-ccc--hhhhcCCCCCCcEEEcCCCcCCCCc----hhHhhhcccCCCCcccEEEcCCCCCCCCc-----CCcccCCCc
Q 042944 175 NQ-ISA--ISKSFGNMCGLKTLHLFDNNLTGQL----PELFLNLSGCSKNSLEILKLGGNKLTGSL-----PDITEFSSL 242 (637)
Q Consensus 175 n~-l~~--l~~~~~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~L 242 (637)
|. +.. ++....++++|++|++++|.+.+.. +..+..++ +|++|++++|.+.... ..+..+++|
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~-----~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT-----SLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC-----CCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC-----CccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 76 222 4444557788888888888776553 23344455 7777777777765211 113345566
Q ss_pred cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCc
Q 042944 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322 (637)
Q Consensus 243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 322 (637)
++|++++|.+.+ .+..+..+++|+.|+++....... .......+..+++|+.++++++.
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~--------------------~~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG--------------------MPEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT--------------------CTTSSSCCCCCTTCCEEEETTCC
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc--------------------hHHHHHHhhccccccccCccccc
Confidence 666666665543 234444455555555543211100 01223446677889999998864
Q ss_pred CCCccchhhhcCCCCCcEEEccCCccccccc-CCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeC--------
Q 042944 323 LEGMITESHVSNLSKLKYMDFSFNSLALNFS-FGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD-------- 393 (637)
Q Consensus 323 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-------- 393 (637)
... . ...+..+++|++|++++|.+..... ..+..+++|++|++.++.....++.....+++|++|++++
T Consensus 282 ~~~-l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 282 PNE-M-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp TTT-G-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred hhH-H-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence 432 2 3367789999999999998754333 2235566777777763322222333345567777777773
Q ss_pred ---CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccC-CCCCCeEeCC
Q 042944 394 ---TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLN-YAGYPGIDLS 441 (637)
Q Consensus 394 ---n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~ 441 (637)
+.+++.....+...+++|++|+++.+.+++.....+.. +++|+.|+++
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 34544444444444567777777666666544444433 5555555554
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=8.3e-28 Score=239.21 Aligned_cols=248 Identities=24% Similarity=0.346 Sum_probs=174.2
Q ss_pred CCCCEEecCCCcCCC--ccchhhhcCCCCCcEEEccC-CcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCcc
Q 042944 311 SKLEFLDLFGNSLEG--MITESHVSNLSKLKYMDFSF-NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYY 387 (637)
Q Consensus 311 ~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 387 (637)
.+++.|++++|.+.+ ..+. .+.++++|++|++++ |.+.... |..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~------------------------p~~l~~l~~L~ 104 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPI------------------------PPAIAKLTQLH 104 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCC------------------------CGGGGGCTTCS
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccC------------------------ChhHhcCCCCC
Confidence 456677777776665 3443 566666666666663 5555444 44455555555
Q ss_pred EEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CC-CccEEEccc
Q 042944 388 FLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PG-NVTSLNLSN 463 (637)
Q Consensus 388 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~-~L~~L~L~~ 463 (637)
+|++++|.+.+..+..+... ++|++|++++|.+++..+..+..+++|++|++++|.+.+..|.. ++ +|++|++++
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp EEEEEEECCEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred EEECcCCeeCCcCCHHHhCC-CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 55555555554444444333 55555555555555555555555555555555555555444332 22 667777777
Q ss_pred ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcC
Q 042944 464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG 543 (637)
Q Consensus 464 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls 543 (637)
|++++..+...... .|++|++++|.+++..+..+..+++|+.|++++|.+++ .+..+..+++|++|+++
T Consensus 184 N~l~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 184 NRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF---------DLGKVGLSKNLNGLDLR 252 (313)
T ss_dssp SEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC---------BGGGCCCCTTCCEEECC
T ss_pred CeeeccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee---------ecCcccccCCCCEEECc
Confidence 77766555544432 39999999999998899999999999999999999883 33336778999999999
Q ss_pred CCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 544 DNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 544 ~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
+|.+++.+|..+. .+++|+.|+|++|++++.+|.. ..+++|+.+++++|+..
T Consensus 253 ~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 253 NNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp SSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred CCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 9999988998887 6999999999999999889876 88999999999999844
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=235.76 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=180.0
Q ss_pred CCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeE
Q 042944 359 PFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGI 438 (637)
Q Consensus 359 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 438 (637)
+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ +. .+++|++|++++|.+++.. ..++|+.|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-TCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-hcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 3444455555555544555566677777777777777665443 22 2367777777777765432 23677888
Q ss_pred eCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhh-hccCCCcEEeccCccCCC
Q 042944 439 DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL-LRWQALAVLNLANNNFSG 517 (637)
Q Consensus 439 ~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~ 517 (637)
++++|.+.+..+..+++|++|++++|++++..+.... ..++|++|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 105 ~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~- 182 (317)
T 3o53_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182 (317)
T ss_dssp ECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred ECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-
Confidence 8888877776666678889999999988876554332 23899999999999997777766 47899999999999988
Q ss_pred CccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 518 NFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 518 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
.++. ...+++|++|++++|.++ .+|..+. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus 183 --------~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 183 --------DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp --------EEEC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred --------cccc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 3332 234889999999999998 6666665 6999999999999998 67888999999999999999998
Q ss_pred -ccccccccccccceeeccCCC
Q 042944 598 -GAIPKCINNLTAMVEKASSNS 618 (637)
Q Consensus 598 -~~~p~~l~~l~~L~~l~l~~n 618 (637)
+.+|..+..+++|+.++++++
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCHHHHHhccccceEEECCCc
Confidence 788889999999999988733
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.7e-28 Score=268.10 Aligned_cols=427 Identities=13% Similarity=0.046 Sum_probs=205.4
Q ss_pred hhcCCCCCcEEEcCCCCCCCCC---cc--------cccc-cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCC
Q 042944 83 TITSLASLRDLYLASSTLLSIN---RP--------SLSS-MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 150 (637)
Q Consensus 83 ~~~~~~~L~~L~l~~~~~~~~~---~~--------~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n 150 (637)
.+..+++|++|+++++...... +. ++.. ...+++|++|++++|.+++..+..+.+.+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3567888999999887532110 00 0111 2246788888888888777666666644488888888877
Q ss_pred -CCCCC-CCchhccCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHh----hhcccCCCCcc
Q 042944 151 -QLAGP-IPDYAFSNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELF----LNLSGCSKNSL 219 (637)
Q Consensus 151 -~l~~~-l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~~~~~~L 219 (637)
.+... ++. .+.++++|++|++++|.++. ++.....+++|++|++++|. .......+ ..++ +|
T Consensus 141 ~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~-----~L 213 (594)
T 2p1m_B 141 EGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCP-----NL 213 (594)
T ss_dssp EEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCT-----TC
T ss_pred CCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCC-----CC
Confidence 44311 222 34467888888888887655 33334467788888888776 21222333 2334 77
Q ss_pred cEEEcCCCC-CCCCcCCcccCCCccEEEccCCcC-------CCCCCCcCCCCCCCcEE-EcCCCCCCCCCCCCCCCCCCC
Q 042944 220 EILKLGGNK-LTGSLPDITEFSSLQELHLFDNKL-------DGSFPEKFRKPSPLVIL-NLDGNQLWGSLPDLSVFPFLT 290 (637)
Q Consensus 220 ~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~i-------~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~L~ 290 (637)
++|++++|. +......+..+++|++|++..+.. .+ .+..+.++++|+.+ .+.....
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-------------- 278 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-------------- 278 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG--------------
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch--------------
Confidence 777777762 222222344556677776554421 11 11123444444444 2221111
Q ss_pred EEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCC-CCCCCceeEEeccC
Q 042944 291 RLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFG-WLPPFQLESIGLLH 369 (637)
Q Consensus 291 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~ 369 (637)
..++..+..+++|+.|++++|.+.+......+..+++|++|++++| +....... ...+++|++|++.+
T Consensus 279 ----------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 279 ----------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp ----------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ----------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 1122222234455555555554433222222344455555555544 22111000 01122333333322
Q ss_pred C---------cCCCCccccc-cCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECC--C----CcCCCcc-----ccc
Q 042944 370 C---------KLGPHFPKWL-QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLS--H----NHLEGTV-----LDL 428 (637)
Q Consensus 370 ~---------~~~~~~~~~l-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~--~----n~i~~~~-----~~~ 428 (637)
| .++......+ ..+++|+.|.+..+.+++.....+...+++|++|+++ + +.+++.. +..
T Consensus 348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l 427 (594)
T 2p1m_B 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 (594)
T ss_dssp SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence 1 1111111111 2355566665555555554444444334556655555 2 2232110 011
Q ss_pred ccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhh-hccCCCcE
Q 042944 429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL-LRWQALAV 507 (637)
Q Consensus 429 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~ 507 (637)
+..+ ++|++|++++ .+++..........++|+.|++++|.+++..+..+ ..+++|++
T Consensus 428 ~~~~---------------------~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 428 VEHC---------------------KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp HHHC---------------------TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred HhhC---------------------CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 2222 3444444433 22222111111112566666666666654444333 55677777
Q ss_pred EeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcc
Q 042944 508 LNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQ 571 (637)
Q Consensus 508 L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~ 571 (637)
|++++|.+++.. +......+++|++|++++|.++......+.+.+|+|+...+..+.
T Consensus 486 L~L~~n~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 486 LEIRDCPFGDKA-------LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EEEESCSCCHHH-------HHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred EECcCCCCcHHH-------HHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 777777664221 112234456677777777766533333443456666655555544
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-24 Score=233.98 Aligned_cols=269 Identities=23% Similarity=0.282 Sum_probs=148.1
Q ss_pred CccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCC
Q 042944 241 SLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320 (637)
Q Consensus 241 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 320 (637)
+++.|++++|.++ ..|..+. ++|+.|++++|.++.... .+++|++|++++|.++. +|. .+++|+.|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 5677777777776 3344333 566666666666653332 34556666666666553 222 345555555555
Q ss_pred CcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc
Q 042944 321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV 400 (637)
Q Consensus 321 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 400 (637)
|.+.+... .+++|+.|++++|.++ . +|. .+++|++|++++|.+.+..
T Consensus 111 N~l~~l~~-----~l~~L~~L~L~~N~l~------------------------~-lp~---~l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 111 NPLTHLPA-----LPSGLCKLWIFGNQLT------------------------S-LPV---LPPGLQELSVSDNQLASLP 157 (622)
T ss_dssp CCCCCCCC-----CCTTCCEEECCSSCCS------------------------C-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred CcCCCCCC-----CCCCcCEEECCCCCCC------------------------c-CCC---CCCCCCEEECcCCcCCCcC
Confidence 55544211 2344444444444433 1 121 1255666666666655422
Q ss_pred chhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCC
Q 042944 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEY 480 (637)
Q Consensus 401 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 480 (637)
. .+++|+.|++++|.+++.. ..+++|+.|++++|.+.+ .+..+ ++
T Consensus 158 ~-----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~~~-------------------------~~ 202 (622)
T 3g06_A 158 A-----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPTLP-------------------------SE 202 (622)
T ss_dssp C-----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCCCC-------------------------TT
T ss_pred C-----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCCcc-------------------------ch
Confidence 1 1245666666666655422 233445555555544443 12223 45
Q ss_pred ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944 481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560 (637)
Q Consensus 481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~ 560 (637)
|+.|++++|.++ .+|. .+++|+.|++++|.++ .+| ..+++|++|++++|.++ .+|. .++
T Consensus 203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~---------~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~ 261 (622)
T 3g06_A 203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT---------SLP---VLPSELKELMVSGNRLT-SLPM----LPS 261 (622)
T ss_dssp CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS---------CCC---CCCTTCCEEECCSSCCS-CCCC----CCT
T ss_pred hhEEECcCCccc-ccCC---CCCCCCEEEccCCccC---------cCC---CCCCcCcEEECCCCCCC-cCCc----ccc
Confidence 555555555555 2332 1356777777777666 344 23466777777777776 5555 356
Q ss_pred CCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccc
Q 042944 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA 609 (637)
Q Consensus 561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 609 (637)
+|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..|..+++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 7777777777776 56666777777777777777777666666655543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6.4e-26 Score=225.48 Aligned_cols=229 Identities=28% Similarity=0.330 Sum_probs=171.3
Q ss_pred CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh--hhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944 87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA--YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM 164 (637)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l 164 (637)
.+++++|++++|.++.+.+ ..+.++++|++|++++|.+.... +..+... ++|++|++++|.+. .++. .+..+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~-~l~~-~~~~l 100 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSS-NFLGL 100 (306)
T ss_dssp CTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEE-EEEE-EEETC
T ss_pred CCCCCEEECCCCccCccCH---hHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCccc-cChh-hcCCC
Confidence 3578888888888887753 34567788889999888887442 4456665 88888888888887 7776 57888
Q ss_pred CCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCC
Q 042944 165 TALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFS 240 (637)
Q Consensus 165 ~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~ 240 (637)
++|++|++++|+++.++. .+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.. .+..+..++
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-----TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-----CCCEEECCCCccccccchhHHhhCc
Confidence 888888888888888653 688888888888888888777777777777 88888888887764 344567777
Q ss_pred CccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCC-CCCEEec
Q 042944 241 SLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLS-KLEFLDL 318 (637)
Q Consensus 241 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l 318 (637)
+|++|++++|.+++..+..+..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..++ +|+.|++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 888888888877766677777777777777777777655442 34467777777777777766666666664 6777777
Q ss_pred CCCcCCCc
Q 042944 319 FGNSLEGM 326 (637)
Q Consensus 319 ~~n~~~~~ 326 (637)
++|.+...
T Consensus 256 ~~N~~~~~ 263 (306)
T 2z66_A 256 TQNDFACT 263 (306)
T ss_dssp TTCCEECS
T ss_pred cCCCeecc
Confidence 77776643
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.9e-26 Score=226.67 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=173.1
Q ss_pred ceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeC
Q 042944 361 QLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDL 440 (637)
Q Consensus 361 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 440 (637)
.++.|++++|.+. .+|..+..+++|++|++++|.+. ..|..+... ++|++|++++|.++ .++..+..+++|+.|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444444444 34444555666666666666666 344444443 66666666666666 44555666666666666
Q ss_pred CCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcc
Q 042944 441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL 520 (637)
Q Consensus 441 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 520 (637)
++|++.+..|..+. ...+.+. ....++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 158 ~~n~~~~~~p~~~~---~~~~~~~----------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~---- 219 (328)
T 4fcg_A 158 RACPELTELPEPLA---STDASGE----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS---- 219 (328)
T ss_dssp EEETTCCCCCSCSE---EEC-CCC----------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC----
T ss_pred CCCCCccccChhHh---hccchhh----------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC----
Confidence 66655554443221 1111100 112288889999998888 77888999999999999999988
Q ss_pred ccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc
Q 042944 521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI 600 (637)
Q Consensus 521 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 600 (637)
.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+
T Consensus 220 -----~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 220 -----ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp -----CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred -----cCchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 6777888999999999999998888888777 6999999999999988899999999999999999999999999
Q ss_pred cccccccccceeeccCCCeeEEEE
Q 042944 601 PKCINNLTAMVEKASSNSTITHIY 624 (637)
Q Consensus 601 p~~l~~l~~L~~l~l~~n~l~~~~ 624 (637)
|+.+.++++|+.+++..+.+..+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSCC--
T ss_pred cHHHhhccCceEEeCCHHHHHHHh
Confidence 999999999999999988776654
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-25 Score=222.85 Aligned_cols=276 Identities=24% Similarity=0.259 Sum_probs=160.2
Q ss_pred cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch---hhhcCCCCCCcEEE
Q 042944 118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI---SKSFGNMCGLKTLH 194 (637)
Q Consensus 118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~ 194 (637)
+.++++++.++.. |..+ .++|++|++++|.+. .++...|.++++|++|++++|+++.+ +..+.++++|++|+
T Consensus 10 ~~l~c~~~~l~~i-p~~~---~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSC-CSCC---CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccC-CCCC---CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 4677777766633 3222 256777777777776 67765677777777777777777654 45566677777777
Q ss_pred cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC--CcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcC
Q 042944 195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272 (637)
Q Consensus 195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 272 (637)
+++|.+. ..+..+..++ +|++|++++|.+....+ .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 85 Ls~n~i~-~l~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLE-----QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCSCSEE-EEEEEEETCT-----TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCCCccc-cChhhcCCCC-----CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 7777766 3444455555 67777777766664432 45556666666666666665555556666666666666
Q ss_pred CCCCCC--CCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccc
Q 042944 273 GNQLWG--SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL 350 (637)
Q Consensus 273 ~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 350 (637)
+|.+.+ ....+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~- 236 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIM- 236 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCC-
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCc-
Confidence 666543 22233335556666666655555445555555555555555555554222 23444555555555555444
Q ss_pred cccCCCCCCCceeEEeccCCcCCCCccccccCC-CCccEEEeeCCCCCCccc-hhhhhcCCCccEEECCCCcCCCccccc
Q 042944 351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQ-KNYYFLDISDTEISDAVP-SWFWDLSPNLYYLNLSHNHLEGTVLDL 428 (637)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~ 428 (637)
+..+..+..+ ++|++|++++|.+..... .++...+...+.+.+..+.+....|..
T Consensus 237 -----------------------~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 237 -----------------------TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp -----------------------BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred -----------------------ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 3444455555 367777777777655422 233333334444555555555444443
Q ss_pred c
Q 042944 429 S 429 (637)
Q Consensus 429 ~ 429 (637)
+
T Consensus 294 ~ 294 (306)
T 2z66_A 294 K 294 (306)
T ss_dssp G
T ss_pred h
Confidence 3
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=223.53 Aligned_cols=282 Identities=21% Similarity=0.198 Sum_probs=189.6
Q ss_pred cccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccC
Q 042944 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSD 296 (637)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 296 (637)
.....+.+++.++..+..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. +..+++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 44556677777775554433 4788888888888766666788888888888888888766554 45588888888888
Q ss_pred CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc-ccccccCCCCCCCceeEEeccCCcCCCC
Q 042944 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS-LALNFSFGWLPPFQLESIGLLHCKLGPH 375 (637)
Q Consensus 297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 375 (637)
|.+++..+..+..+++|+.|++++|.+.+......+.++++|++|++++|. +....+..+..+++|++|++++|.+...
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 888876666688888888888888888764332467888888888888884 6655566777778888888888887776
Q ss_pred ccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCC
Q 042944 376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGN 455 (637)
Q Consensus 376 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 455 (637)
.+..+..+++|++|++++|.+.. .+..+...+++|++|++++|.+++..+..+... .....
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------~~~~~ 250 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------------ETNSL 250 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------CCCC
T ss_pred CHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccc------------------cccch
Confidence 67778888888888888888754 333344445778888887777765432211100 01123
Q ss_pred ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc-ccCC
Q 042944 456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKC 534 (637)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l 534 (637)
++.++++++.+. ++.+. .+|..+..+++|+.|++++|+++ .+|.. +..+
T Consensus 251 l~~l~L~~~~l~--------------------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~---------~i~~~~~~~l 300 (353)
T 2z80_A 251 IKKFTFRNVKIT--------------------DESLF-QVMKLLNQISGLLELEFSRNQLK---------SVPDGIFDRL 300 (353)
T ss_dssp CCEEEEESCBCC--------------------HHHHH-HHHHHHHTCTTCCEEECCSSCCC---------CCCTTTTTTC
T ss_pred hhcccccccccc--------------------Ccchh-hhHHHHhcccCCCEEECCCCCCC---------ccCHHHHhcC
Confidence 334444333322 11111 34566777777777777777776 45554 3667
Q ss_pred CCCcEEEcCCCccccc
Q 042944 535 NELKIIDAGDNKFSGT 550 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~ 550 (637)
++|++|++++|++.+.
T Consensus 301 ~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CCCCEEEeeCCCccCc
Confidence 7777777777777643
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.1e-24 Score=230.78 Aligned_cols=200 Identities=21% Similarity=0.270 Sum_probs=151.4
Q ss_pred CCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEc
Q 042944 382 SQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL 461 (637)
Q Consensus 382 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L 461 (637)
.+++|++|++++|.+.+... .+++|+.|++++|.+++... .+++|++|++++|.+.+. +..+++|+.|++
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L 168 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PALPSELCKLWA 168 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CCCCTTCCEEEC
T ss_pred CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CCccCCCCEEEC
Confidence 34555566666665554322 23566666666666664322 236677777777776653 345678888888
Q ss_pred ccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEE
Q 042944 462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIID 541 (637)
Q Consensus 462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ 541 (637)
++|+++... ...++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|++|+
T Consensus 169 ~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~---------~l~~~---~~~L~~L~ 227 (622)
T 3g06_A 169 YNNQLTSLP-----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT---------SLPAL---PSGLKELI 227 (622)
T ss_dssp CSSCCSCCC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS---------SCCCC---CTTCCEEE
T ss_pred CCCCCCCCc-----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc---------ccCCC---CCCCCEEE
Confidence 888887643 122889999999999884 4432 489999999999998 55543 47899999
Q ss_pred cCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944 542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT 621 (637)
Q Consensus 542 ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 621 (637)
+++|.++ .+|. .+++|+.|+|++|.++ .+|. .+++|+.|++++|.++ .+|..|..+++|+.|++++|+++
T Consensus 228 Ls~N~L~-~lp~----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 228 VSGNRLT-SLPV----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ccCCccC-cCCC----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 9999998 6772 5789999999999998 6776 5789999999999999 78999999999999999999986
Q ss_pred E
Q 042944 622 H 622 (637)
Q Consensus 622 ~ 622 (637)
.
T Consensus 298 ~ 298 (622)
T 3g06_A 298 E 298 (622)
T ss_dssp H
T ss_pred C
Confidence 4
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.6e-28 Score=266.50 Aligned_cols=256 Identities=22% Similarity=0.197 Sum_probs=165.4
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccC-CCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCCCCCCCCc---
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMN-SSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQLAGPIPD--- 158 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~--- 158 (637)
...+++|++|+++++.+++... ..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCL---ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHH---HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHH---HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 3578899999999998776543 4443 5799999999999 566554555665559999999999987632221
Q ss_pred hhccCCCCCCEEEcCCCc--ccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCC-----
Q 042944 159 YAFSNMTALQHLNLSLNQ--ISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL----- 229 (637)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~--l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~----- 229 (637)
.....+++|++|++++|. +.. ++..+.++++|++|++++|......+..+..++ +|+.|+++.+..
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-----~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-----QLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-----TCSEEECSBCCCCCCHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-----cceEcccccccCccchh
Confidence 123477899999999997 332 444456689999999999943334677788888 999999876643
Q ss_pred --CCCcCCcccCCCccEE-EccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCC-CC-CCCCCCCCEEEccCCcCCCC-C
Q 042944 230 --TGSLPDITEFSSLQEL-HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL-PD-LSVFPFLTRLDVSDSRLNGT-V 303 (637)
Q Consensus 230 --~~~~~~~~~~~~L~~L-~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~n~~~~~-~ 303 (637)
....+.+..+++|+.| .+.+.... ..+..+..+++|++|++++|.+.... .. +..+++|++|++++| +.+. .
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred hHHHHHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 1223346778899998 34433221 23333345688888888888764321 11 234677888888777 3321 2
Q ss_pred hhhhcCCCCCCEEecCC---------CcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944 304 SEGLGRLSKLEFLDLFG---------NSLEGMITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 304 ~~~l~~l~~L~~L~l~~---------n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
+.....+++|+.|++.+ +.+++........++++|++|.+..+.++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 22223467777777733 23332222222234666666666555554
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=222.56 Aligned_cols=277 Identities=21% Similarity=0.203 Sum_probs=159.3
Q ss_pred CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcE
Q 042944 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKT 192 (637)
Q Consensus 114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~ 192 (637)
|+.....+++++.++. .|..+ .++|++|++++|.++ .++...+.++++|++|++++|+++.+ +..|.++++|++
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~---~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGL---TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTC---CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCccc-ccccc---cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3455557777777764 33322 256777777777776 66655677777777777777777775 456777777777
Q ss_pred EEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC--CcccCCCccEEEccCCc-CCCCCCCcCCCCCCCcEE
Q 042944 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP--DITEFSSLQELHLFDNK-LDGSFPEKFRKPSPLVIL 269 (637)
Q Consensus 193 L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L 269 (637)
|++++|.+.+..+..+..++ +|++|++++|.+...+. .+..+++|++|++++|. ++...+..+..
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------- 172 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLS-----SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG------- 172 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCT-----TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-------
T ss_pred EECCCCcCCcCCHhHhCCCc-----cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC-------
Confidence 77777777755555566666 77777777776664433 34455555555555552 33333334444
Q ss_pred EcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944 270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+...+..+++|++|++++|.+.
T Consensus 173 ----------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 173 ----------------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ----------------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCT
T ss_pred ----------------CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccc
Confidence 4455555555555554455556666666666666666643 33334555666777777766665
Q ss_pred ccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc----cchhhhhcCCCccEEECCCCcCCCcc
Q 042944 350 LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA----VPSWFWDLSPNLYYLNLSHNHLEGTV 425 (637)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~ 425 (637)
......+. .......++.++++++.+.+. .+.++.. +++|++|++++|.++...
T Consensus 236 ~~~~~~l~---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~~i~ 293 (353)
T 2z80_A 236 TFHFSELS---------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKSVP 293 (353)
T ss_dssp TCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCCCCC
T ss_pred cccccccc---------------------cccccchhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCCccC
Confidence 33221110 012234455556665555442 1222222 356666666666666444
Q ss_pred cccccCCCCCCeEeCCCCcCc
Q 042944 426 LDLSLNYAGYPGIDLSSNDFE 446 (637)
Q Consensus 426 ~~~~~~~~~L~~L~l~~n~~~ 446 (637)
...+..+++|++|++++|++.
T Consensus 294 ~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 294 DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCBC
T ss_pred HHHHhcCCCCCEEEeeCCCcc
Confidence 443455555555555555544
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=224.71 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=52.4
Q ss_pred hhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCC
Q 042944 498 CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP 577 (637)
Q Consensus 498 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~ 577 (637)
.|.++++|+.|++++|.++ .+| .+..+++|++|++++|.+++..+..+. .+++|+.|+|++|++++..+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLR---------EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp TTTTCSSCCEEECTTSCCS---------SCC-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECT
T ss_pred hhhcccccCeecCCCCcCc---------ccc-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEECh
Confidence 4444445555555555444 222 134444455555555555422232222 34555555555555544444
Q ss_pred ccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944 578 RNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 578 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
..|..+++|+.|+|++|++++..+..|..+++|++|++++|++
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 4444455555555555555444444444455555555555544
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=9.4e-25 Score=214.57 Aligned_cols=222 Identities=26% Similarity=0.281 Sum_probs=150.1
Q ss_pred cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944 91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHL 170 (637)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 170 (637)
+.++++++.++.++ ..+ .++|++|++++|.+++..+..+..+ ++|++|++++|.++ .++..+|.++++|++|
T Consensus 14 ~~~~c~~~~l~~ip----~~~--~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP----VGI--PAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLA-RIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCC----TTC--CTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCC----cCC--CCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccc-eeCHhhcCCccCCCEE
Confidence 56777777777663 222 3678888888888776655555555 77888888888777 5544467778888888
Q ss_pred EcCCCc-ccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCccEEEc
Q 042944 171 NLSLNQ-ISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHL 247 (637)
Q Consensus 171 ~L~~n~-l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l 247 (637)
++++|. +..+ +..+.++++|++|++++|.+.+..+..+..++ +|++|++++|.+...++. +..+++|++|++
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-----ALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-----CCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 888876 7665 56677778888888888877766666677666 777777777777655443 556667777777
Q ss_pred cCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944 248 FDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 248 ~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 325 (637)
++|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 77776655555566666777777777666654333 3336666666666666665555556666666666666666553
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3.3e-24 Score=225.15 Aligned_cols=132 Identities=19% Similarity=0.165 Sum_probs=80.0
Q ss_pred CCccEEeCCCC-CCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944 479 EYFSYLDVSDN-LLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557 (637)
Q Consensus 479 ~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 557 (637)
++|++|++++| .+....+..|..+++|+.|++++|.++ .+| .+..+++|++|++++|.+++..|..+.
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 239 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---------DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH- 239 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---------SCC-CCTTCTTCCEEECTTSCCSEECGGGGT-
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---------ccc-cccccccccEEECcCCcCcccCccccc-
Confidence 55555555552 333233345666666666666666666 333 245566666777777766633344333
Q ss_pred cCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944 558 TLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT 621 (637)
Q Consensus 558 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 621 (637)
.+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++.
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5666777777777666555666666667777777777666555556666666777777766654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=223.70 Aligned_cols=238 Identities=17% Similarity=0.115 Sum_probs=199.0
Q ss_pred eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCC
Q 042944 362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441 (637)
Q Consensus 362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 441 (637)
++..+++++.+.......+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 3444555555544444556778899999999999998777777665 899999999999986654 8899999999999
Q ss_pred CCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccc
Q 042944 442 SNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLT 521 (637)
Q Consensus 442 ~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 521 (637)
+|.+.+..+ .++|++|++++|++++..+.. .++|+.|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 89 ~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 159 (317)
T 3o53_A 89 NNYVQELLV--GPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--- 159 (317)
T ss_dssp SSEEEEEEE--CTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE---
T ss_pred CCccccccC--CCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc---
Confidence 999987553 379999999999998765443 38899999999999987788899999999999999999843
Q ss_pred cccccCCccc-cCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc
Q 042944 522 FFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI 600 (637)
Q Consensus 522 ~~~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 600 (637)
.+..+ ..+++|++|++++|.++ .++... .+++|++|+|++|+++ .+|..+..+++|+.|++++|+++ .+
T Consensus 160 -----~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 160 -----NFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp -----EGGGGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred -----cHHHHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-ch
Confidence 22333 46899999999999998 555444 3899999999999999 56667999999999999999999 67
Q ss_pred cccccccccceeeccCCCeeE
Q 042944 601 PKCINNLTAMVEKASSNSTIT 621 (637)
Q Consensus 601 p~~l~~l~~L~~l~l~~n~l~ 621 (637)
|..+..+++|++|++++|++.
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCB
T ss_pred hhHhhcCCCCCEEEccCCCcc
Confidence 889999999999999999996
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=4.6e-24 Score=223.24 Aligned_cols=229 Identities=26% Similarity=0.321 Sum_probs=117.2
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL 167 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L 167 (637)
++++.|+|++|.+..+.+ ..+.++++|++|+|++|.+....+..+..+ ++|++|++++|.++ .++...|..+++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRLT-TIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTC-SSCCEEECCSSCCS-SCCTTTSCSCSSC
T ss_pred CCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCC-ccCCEEECCCCcCC-eeCHhHhhccccC
Confidence 345555555555555442 334444555555555555554444444443 55555555555555 4444445555555
Q ss_pred CEEEcCCCcccchhh-hcCCCCCCcEEEcCCC-cCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944 168 QHLNLSLNQISAISK-SFGNMCGLKTLHLFDN-NLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL 245 (637)
Q Consensus 168 ~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 245 (637)
++|++++|+++.++. .|.++++|++|++++| .+....+..|..++ +|++|++++|.+.. ++.+..+++|++|
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-----~L~~L~L~~n~l~~-~~~~~~l~~L~~L 212 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-----NLRYLNLAMCNLRE-IPNLTPLIKLDEL 212 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-----SCCEEECTTSCCSS-CCCCTTCSSCCEE
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-----ccCeecCCCCcCcc-ccccCCCcccCEE
Confidence 555555555555432 4555555555555553 22222223444444 55555555554442 2234444444444
Q ss_pred EccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944 246 HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 246 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 325 (637)
++++|.+++..+..|.. +++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 213 ~Ls~N~l~~~~~~~~~~-----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQG-----------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp ECTTSCCCEECTTTTTT-----------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred ECCCCccCccChhhhcc-----------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 44444444433444444 5555555555555555555555666666666666666654
Q ss_pred ccchhhhcCCCCCcEEEccCCccccc
Q 042944 326 MITESHVSNLSKLKYMDFSFNSLALN 351 (637)
Q Consensus 326 ~~~~~~~~~l~~L~~L~l~~n~~~~~ 351 (637)
.+...+..+++|+.|++++|++.++
T Consensus 270 -~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 270 -LPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp -CCTTTTSSCTTCCEEECCSSCEECS
T ss_pred -cChhHhccccCCCEEEcCCCCccCC
Confidence 2333556666666666666666543
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=3.6e-24 Score=210.43 Aligned_cols=265 Identities=22% Similarity=0.212 Sum_probs=159.0
Q ss_pred cEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI 221 (637)
Q Consensus 143 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~ 221 (637)
++++.+++.++ .+|. ...++|++|++++|.++.++ ..|..+++|++|++++|.+.+..+..+..++ +|++
T Consensus 14 ~~~~c~~~~l~-~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-----LLEQ 84 (285)
T ss_dssp CEEECCSSCCS-SCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCE
T ss_pred eEEEcCcCCcc-cCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-----CCCE
Confidence 67888888887 7776 23467888888888888865 4678888888888888888766677777766 7777
Q ss_pred EEcCCCC-CCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944 222 LKLGGNK-LTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL 299 (637)
Q Consensus 222 L~l~~n~-~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 299 (637)
|++++|. +... +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------- 145 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP------------------- 145 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------------------
Confidence 7777775 5543 223555566666666666665555555555555555555555554333
Q ss_pred CCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcccc
Q 042944 300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW 379 (637)
Q Consensus 300 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 379 (637)
+..+..+++|+.|++++|.+.+ .+...+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 146 ----~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 146 ----DDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred ----HhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence 3334444455555555554443 22223445555555555555555444445555555555555566555555566
Q ss_pred ccCCCCccEEEeeCCCCCCccch-hhhhcCCCccEEECCCCcCCCcccccccC--CCCCCeEeCCCC
Q 042944 380 LQSQKNYYFLDISDTEISDAVPS-WFWDLSPNLYYLNLSHNHLEGTVLDLSLN--YAGYPGIDLSSN 443 (637)
Q Consensus 380 l~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n 443 (637)
+..+++|++|++++|.+....+. ++. ..++.+..+.+.+....|..+.. +..++..++.+|
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~---~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARPLW---AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHHHH---HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccCcccCEEeccCCCccCCCCcHHHH---HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 77888888888888887654332 222 23444455566665555544432 334444444444
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=4.6e-24 Score=224.02 Aligned_cols=248 Identities=20% Similarity=0.211 Sum_probs=163.1
Q ss_pred CcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944 90 LRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH 169 (637)
Q Consensus 90 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 169 (637)
.+.++.++..++.++ ..+. +++++|+|++|.++...+..+..+ ++|++|++++|.+. .++..+|.++++|++
T Consensus 56 ~~~v~c~~~~l~~iP----~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP----QGIP--SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIR-QIEVGAFNGLASLNT 127 (452)
T ss_dssp SCEEECCSSCCSSCC----SCCC--TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred CcEEEECCCCcCccC----CCCC--CCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccC-CcChhhccCcccCCE
Confidence 456666666666553 2222 567777777777766555555555 77777777777776 555446677777777
Q ss_pred EEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCCcC-CcccCCCccEEE
Q 042944 170 LNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLP-DITEFSSLQELH 246 (637)
Q Consensus 170 L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~-~~~~~~~L~~L~ 246 (637)
|++++|+++.++. .|.++++|++|++++|.+....+..|..++ +|+.|++++|. +....+ .+..+++|++|+
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-----TCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-----cccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 7777777776543 466677777777777776655555666666 77777777643 332222 355666777777
Q ss_pred ccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944 247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 247 l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 325 (637)
+++|.+++. ..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 203 L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 203 LGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 777777643 2466677777777777777665443 3447777777777777776666777777788888888887775
Q ss_pred ccchhhhcCCCCCcEEEccCCccccccc
Q 042944 326 MITESHVSNLSKLKYMDFSFNSLALNFS 353 (637)
Q Consensus 326 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 353 (637)
.+...+..+++|+.|++++|++.++..
T Consensus 281 -~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 281 -LPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp -CCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred -cChHHhccccCCCEEEccCCCcCCCCC
Confidence 344466777788888888887765544
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.4e-24 Score=215.43 Aligned_cols=85 Identities=26% Similarity=0.385 Sum_probs=72.4
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L 219 (637)
+++++|++++|.+. .+|. .+.++++|++|++++|.++.+|..+.++++|++|++++|.+. ..|..+..++ +|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-----~L 152 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-----RL 152 (328)
T ss_dssp TTCCEEEEESSCCS-SCCS-CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-----TC
T ss_pred cceeEEEccCCCch-hcCh-hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCc-----CC
Confidence 78999999999998 8887 577799999999999999988888899999999999999888 6677788877 88
Q ss_pred cEEEcCCCCCCCC
Q 042944 220 EILKLGGNKLTGS 232 (637)
Q Consensus 220 ~~L~l~~n~~~~~ 232 (637)
++|++++|.....
T Consensus 153 ~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 153 RELSIRACPELTE 165 (328)
T ss_dssp CEEEEEEETTCCC
T ss_pred CEEECCCCCCccc
Confidence 8888888665443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.9e-25 Score=231.43 Aligned_cols=236 Identities=17% Similarity=0.147 Sum_probs=184.0
Q ss_pred CCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeE
Q 042944 359 PFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGI 438 (637)
Q Consensus 359 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 438 (637)
+++|+.|++++|.+....|..+..+++|++|++++|.+.+..+ +. .+++|++|++++|.+++..+ .++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 3355555555555555556667777777777777777765444 32 34777788887777764332 2678888
Q ss_pred eCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhh-ccCCCcEEeccCccCCC
Q 042944 439 DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL-RWQALAVLNLANNNFSG 517 (637)
Q Consensus 439 ~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~ 517 (637)
++++|.+.+..+..+++|++|++++|++++..+..+.. .++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888887777777788999999999988766544332 38999999999999988888776 78999999999999883
Q ss_pred CccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 518 NFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 518 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
+|. ...+++|++|++++|.++ .+|..+. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++.
T Consensus 184 ---------~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 184 ---------VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---------EEC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ---------ccc-cccCCCCCEEECCCCCCC-CCCHhHc-CCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 322 335899999999999998 5666666 6999999999999999 57888999999999999999998
Q ss_pred -ccccccccccccceeeccC
Q 042944 598 -GAIPKCINNLTAMVEKASS 616 (637)
Q Consensus 598 -~~~p~~l~~l~~L~~l~l~ 616 (637)
+.+|..+..++.|+.++++
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 6778889999999988885
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3e-24 Score=226.58 Aligned_cols=218 Identities=18% Similarity=0.121 Sum_probs=189.1
Q ss_pred CCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEc
Q 042944 382 SQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL 461 (637)
Q Consensus 382 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L 461 (637)
.+++|+.|++++|.+.+..+..+... ++|++|++++|.+++..+ +..+++|+.|++++|.+++..+. ++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~--~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG--PSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC--TTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC--CCcCEEEC
Confidence 44589999999999999877777665 899999999999987665 88999999999999999876543 89999999
Q ss_pred ccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcccc-CCCCCcEE
Q 042944 462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK-KCNELKII 540 (637)
Q Consensus 462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~-~l~~L~~L 540 (637)
++|.+++..+.. .++|+.|++++|.+++..|..+..+++|+.|++++|.+++. .|..+. .+++|++|
T Consensus 107 ~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 107 ANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL 174 (487)
T ss_dssp CSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred cCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEE
Confidence 999998765542 38999999999999988888999999999999999999843 344444 78999999
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944 541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 541 ~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
++++|.++ .++... .+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++
T Consensus 175 ~Ls~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 175 NLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCC-EEECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred ecCCCccc-cccccc--cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 99999998 445433 48999999999999995 5666999999999999999999 5788999999999999999998
Q ss_pred E
Q 042944 621 T 621 (637)
Q Consensus 621 ~ 621 (637)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 6
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.9e-25 Score=222.33 Aligned_cols=201 Identities=20% Similarity=0.195 Sum_probs=140.0
Q ss_pred CCccEEECCCCcCCCcccccc--cCCCCCCeEeCCCCcCcCCCCCC--------CCCccEEEcccccccCcccccccccC
Q 042944 409 PNLYYLNLSHNHLEGTVLDLS--LNYAGYPGIDLSSNDFEGPVPPV--------PGNVTSLNLSNNKFSGPISSLCSISG 478 (637)
Q Consensus 409 ~~L~~L~l~~n~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~~~~~ 478 (637)
++|++|++++|.+++..+..+ ..+++|++|++++|.+.+. |.. +++|++|++++|++.+..+.... ..
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cC
Confidence 566666666666665555443 5566666666666666554 221 26777777777777665543332 22
Q ss_pred CCccEEeCCCCCCccc--Cchhh--hccCCCcEEeccCccCCCCccccccccCC-ccccCCCCCcEEEcCCCcccccCCh
Q 042944 479 EYFSYLDVSDNLLSGE--LPDCL--LRWQALAVLNLANNNFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPA 553 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~ 553 (637)
++|++|++++|++.+. .+..+ ..+++|++|++++|.+++.. .++ ..+..+++|++|++++|.+++..|.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------GVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------HHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------HHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 7888888888887654 23333 77888999999999887211 112 2235678899999999988865544
Q ss_pred hhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 554 WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 554 ~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 44435788999999999988 7777766 8899999999999855 66 8889999999999998764
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.6e-24 Score=215.59 Aligned_cols=252 Identities=19% Similarity=0.183 Sum_probs=150.0
Q ss_pred cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCC-CCCCchhcc-------CCCCCCEEEcCCCcccc-hh
Q 042944 111 MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLA-GPIPDYAFS-------NMTALQHLNLSLNQISA-IS 181 (637)
Q Consensus 111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~-~~l~~~~~~-------~l~~L~~L~L~~n~l~~-l~ 181 (637)
+...++|++|++++|.+ ..|..+... |++|++++|.+. ..++. .+. ++++|++|++++|+++. +|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 34447888899999988 456556654 888899988874 23444 233 68889999999888885 66
Q ss_pred hhc--CCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCc
Q 042944 182 KSF--GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK 259 (637)
Q Consensus 182 ~~~--~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 259 (637)
..+ ..+++|++|++++|.+.+. |..+..+... ..++|++|++++|.+++..+..
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-----------------------~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW-----------------------LKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-----------------------CCTTCCEEEEESCSCCCCCTTT
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-----------------------hcCCCcEEEeeCCCCccchHHH
Confidence 655 7888888888888888866 7777766311 1234555555555555444455
Q ss_pred CCCCCCCcEEEcCCCCCCCC---CCCC--CCCCCCCEEEccCCcCCC---CChhhhcCCCCCCEEecCCCcCCCccchhh
Q 042944 260 FRKPSPLVILNLDGNQLWGS---LPDL--SVFPFLTRLDVSDSRLNG---TVSEGLGRLSKLEFLDLFGNSLEGMITESH 331 (637)
Q Consensus 260 l~~l~~L~~L~l~~~~~~~~---~~~~--~~~~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 331 (637)
+..+++|++|++++|++.+. +..+ ..+++|++|++++|.+++ .....+..+++|+.|++++|.+.+..+...
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 55666666666666654321 1111 345666666666666652 112233456677777777777766443334
Q ss_pred hcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCC
Q 042944 332 VSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS 397 (637)
Q Consensus 332 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 397 (637)
+..+++|++|++++|.++. .+..+. ++|++|++++|.+++. |. +..+++|++|++++|.++
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 5556677777777776652 222221 4444444444444433 22 444444444444444443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=3.7e-22 Score=195.05 Aligned_cols=204 Identities=23% Similarity=0.246 Sum_probs=131.5
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEE
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTL 193 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L 193 (637)
++|++|++++|.+++..+..+..+ ++|++|++++|.+. .++..+|.++++|++|++++|+++.++ ..|.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 457777777777765555445555 67777777777766 555546667777777777777776653 456677777777
Q ss_pred EcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc----
Q 042944 194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV---- 267 (637)
Q Consensus 194 ~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~---- 267 (637)
++++|.+.+..+..+..++ +|++|++++|.+.. .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred ECCCCCccccCchhcccCC-----CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 7777776655554566665 67777777776664 233466666777777777766655555555544444
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944 268 ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 268 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 325 (637)
.+++++|.+....+......+|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred eeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6677777766555555555567777777777665555556666777777777776654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.8e-22 Score=193.64 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=108.0
Q ss_pred CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEc
Q 042944 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNL 461 (637)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L 461 (637)
+|++|++++|.+.+..+..+... ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45555555555544433333332 45555555555555444444455555555555555544433221 334444455
Q ss_pred ccccccCcccccccccCCCccEEeCCCCCCccc-CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCc--
Q 042944 462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGE-LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELK-- 538 (637)
Q Consensus 462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~-- 538 (637)
++|++.+..+.. ....++|++|++++|.+++. +|..+..+++|+.|++++|++++. .+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~l 178 (276)
T 2z62_A 108 VETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--------YCTDLRVLHQMPLL 178 (276)
T ss_dssp TTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--------CGGGGHHHHTCTTC
T ss_pred CCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC--------CHHHhhhhhhcccc
Confidence 444444332211 11226666666666666643 466667777777777777766622 112333334444
Q ss_pred --EEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 539 --IIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 539 --~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
+|++++|.++ .++...+ ...+|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 179 ~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 179 NLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ceeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 6677777766 4444444 245677777777776644444456667777777777766644
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.3e-22 Score=193.17 Aligned_cols=231 Identities=24% Similarity=0.325 Sum_probs=167.3
Q ss_pred ccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh
Q 042944 52 SPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA 131 (637)
Q Consensus 52 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 131 (637)
.+...+.....+.+..+....... ...+++|++|+++++.+... ..+..+++|++|++++|.+.+.
T Consensus 13 ~~~~~~~~l~~l~l~~~~~~~~~~--------~~~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l~~n~l~~~- 78 (272)
T 3rfs_A 13 FPDDAFAETIKANLKKKSVTDAVT--------QNELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLALGGNKLHDI- 78 (272)
T ss_dssp SCSHHHHHHHHHHHTCSCTTSEEC--------HHHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECTTSCCCCC-
T ss_pred cCCchHHHHHHHHhcCcccccccc--------cccccceeeeeeCCCCcccc-----cccccCCCCcEEECCCCCCCCc-
Confidence 345566666667777766555443 56788899999999888765 4567778999999999988764
Q ss_pred hhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhh
Q 042944 132 YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLN 210 (637)
Q Consensus 132 ~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 210 (637)
..+..+ ++|++|++++|.++ .++...+.++++|++|++++|+++.++. .|.++++|++|++++|.+.+..+..+..
T Consensus 79 -~~l~~l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 79 -SALKEL-TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp -GGGTTC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred -hhhcCC-CCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc
Confidence 245555 88999999999888 6666577888889999999888888654 4788888888888888888666666777
Q ss_pred cccCCCCcccEEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCC
Q 042944 211 LSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFL 289 (637)
Q Consensus 211 l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 289 (637)
++ +|+.|++++|.+...++. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.. .++++
T Consensus 156 l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l 224 (272)
T 3rfs_A 156 LT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGI 224 (272)
T ss_dssp CT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTT
T ss_pred Cc-----cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHH
Confidence 77 888888888877765544 4567777777777777776666666777777777777776542 24456
Q ss_pred CEEEccCCcCCCCChhhhcCC
Q 042944 290 TRLDVSDSRLNGTVSEGLGRL 310 (637)
Q Consensus 290 ~~L~l~~n~~~~~~~~~l~~l 310 (637)
+.+++..|.+.+.+|..++.+
T Consensus 225 ~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp HHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHHHHHHhCCCcccCccccc
Confidence 666666666665555554443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.7e-21 Score=189.57 Aligned_cols=201 Identities=22% Similarity=0.200 Sum_probs=147.3
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN 163 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~ 163 (637)
++.++++++++++++.++.+. ..+. +++++|++++|.++...+..+..+ ++|++|++++|.++ .++. ...
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip----~~~~--~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~-~~~~--~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP----PDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELT-KLQV--DGT 75 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC----SCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCC-EEEC--CSC
T ss_pred ccccCCccEEECCCCCCCcCC----CCCC--CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccC-cccC--CCC
Confidence 567888999999999888774 2332 688999999999887777767776 89999999999887 6766 378
Q ss_pred CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCc
Q 042944 164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSL 242 (637)
Q Consensus 164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L 242 (637)
+++|++|++++|+++.+|..+.++++|++|++++|++++..+..|..++ +|++|++++|.+...++. +..+++|
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----ELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----CCCEEECCCCCCCccChhhcccccCC
Confidence 8899999999999988888888888888888888888866667777777 777777777777755443 3456667
Q ss_pred cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL 299 (637)
Q Consensus 243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 299 (637)
++|++++|.++...+..|..+++|+.|++++|++......+...++|+.+++++|++
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 777777766665555555666666666666666654444444445555555555544
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.4e-21 Score=187.33 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=128.9
Q ss_pred CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEc
Q 042944 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNL 461 (637)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L 461 (637)
..+.++++++.++.. |..+ ++++++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +++|++|++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCcc-CCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 456677777776653 3222 357777888888777766666777777777777777776554432 456666666
Q ss_pred ccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCCcEE
Q 042944 462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKII 540 (637)
Q Consensus 462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L~~L 540 (637)
++|++.+..+..+ ...++|++|++++|.++...+..|..+++|+.|++++|.++ .+|. .+..+++|++|
T Consensus 93 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 93 TDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ---------SLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEE
T ss_pred CCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC---------ccCHhHccCCccccee
Confidence 6666654433222 22267777777777777666666777777777777777766 3333 35667777777
Q ss_pred EcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944 541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 541 ~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 598 (637)
++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus 163 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77777776 4554444457777777777777774444456667777777777777654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.9e-21 Score=189.29 Aligned_cols=199 Identities=21% Similarity=0.246 Sum_probs=101.0
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L 219 (637)
++|++|++++|.+. .++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..++ +|
T Consensus 41 ~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT-----NL 111 (272)
T ss_dssp TTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TC
T ss_pred cceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCc-----CC
Confidence 44555555555444 3332 444555555555555544442 344455555555555555444444444444 45
Q ss_pred cEEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccCC
Q 042944 220 EILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDS 297 (637)
Q Consensus 220 ~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n 297 (637)
++|++++|.+...++. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.. ..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 5555555544433332 344455555555555555444444555555556655555555444432 23555666666666
Q ss_pred cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCC
Q 042944 298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFG 355 (637)
Q Consensus 298 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 355 (637)
.+.+..+..+..+++|+.|++++|.+.+ .+++++.++++.|.+.+..+..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCc
Confidence 6555555555566666666666665442 2345555555555555444433
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.4e-21 Score=190.04 Aligned_cols=193 Identities=21% Similarity=0.335 Sum_probs=130.4
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN 163 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~ 163 (637)
+..+++|++|+++++.+..+ +.+..+++|++|++++|.+.+..+ +..+ ++|++|++++|.+. .++. +..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-----~~~~~l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~-~~~~--~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLK-NVSA--IAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCS-CCGG--GTT
T ss_pred HHHcCCcCEEEeeCCCccCc-----hhhhccCCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCC-Cchh--hcC
Confidence 45678888899988888775 346667888888888888886554 5555 88888888888887 6654 788
Q ss_pred CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCcc
Q 042944 164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ 243 (637)
Q Consensus 164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 243 (637)
+++|++|++++|+++.++. +..+++|++|++++|.+.+..+ +..++ +|+.|++++|.+....+ +..+++|+
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----~L~~L~l~~n~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLT-----NLQYLSIGNAQVSDLTP-LANLSKLT 176 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT-----TCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCC-----CccEEEccCCcCCCChh-hcCCCCCC
Confidence 8888888888888888754 7888888888888888774433 66666 77777777777764333 55666666
Q ss_pred EEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944 244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL 299 (637)
Q Consensus 244 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 299 (637)
+|++++|.+++..+ +..+++|++|++++|++.+.. .+..+++|++|++++|.+
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 66666666654322 444555555555555544332 233344444444444444
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=5.2e-21 Score=187.53 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=146.2
Q ss_pred ccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCC-CCCCCccE
Q 042944 380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVP-PVPGNVTS 458 (637)
Q Consensus 380 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~ 458 (637)
+..+++++.++++++.+.... ..+ ++++++|++++|.+++..+..+..+++|+.|++++|.+++..+ ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCC-CCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 445666777777777766532 222 3577777777777776666677777777777777777765433 23667778
Q ss_pred EEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCC
Q 042944 459 LNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNEL 537 (637)
Q Consensus 459 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L 537 (637)
|++++|++....... ...++|++|++++|++++..+..|..+++|+.|++++|+++ .+|. .+..+++|
T Consensus 82 L~Ls~N~l~~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L 150 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---------TLPPGLLTPTPKL 150 (290)
T ss_dssp EECCSSCCSSCCCCT--TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC---------CCCTTTTTTCTTC
T ss_pred EECCCCcCCcCchhh--ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC---------ccChhhcccccCC
Confidence 888887776443322 22378888888888888766677888888888888888887 3333 35678888
Q ss_pred cEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 538 ~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 598 (637)
+.|++++|+++ .+|...+..+++|+.|+|++|+++ .+|..+...++|+.+++++|++..
T Consensus 151 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 88888888887 777766657888888888888888 777778888888888888888763
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.1e-20 Score=181.71 Aligned_cols=201 Identities=27% Similarity=0.355 Sum_probs=113.6
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEE
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTL 193 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L 193 (637)
.+.++++++++.++. .|..+ .+++++|++++|.+. .++..+|.++++|++|++++|+++.++. .|.++++|++|
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 346677777777664 23222 255777777777776 5655567777777777777777776644 34667777777
Q ss_pred EcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcC
Q 042944 194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272 (637)
Q Consensus 194 ~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 272 (637)
++++|.+....+..|..++ +|++|++++|.+....+. +..+++|++|++++|.+++..+..|..
T Consensus 91 ~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------- 155 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLV-----NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---------- 155 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCS-----SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred ECCCCcCCcCCHhHccccc-----CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC----------
Confidence 7777766655555555555 566666665555543332 334444555555554444333333444
Q ss_pred CCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944 273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+...+..+++|+.|++++|++.
T Consensus 156 -------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 156 -------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred -------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCee
Confidence 4555555555555554444445555555555555555554 22334555556666666666554
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.6e-23 Score=208.46 Aligned_cols=260 Identities=19% Similarity=0.148 Sum_probs=150.2
Q ss_pred EEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCC-CccEEEeeC
Q 042944 315 FLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYFLDISD 393 (637)
Q Consensus 315 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~ 393 (637)
...++.|.+.+.++. .+...++|++|++++|.++...... +...+..++ +|++|++++
T Consensus 2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~--------------------l~~~l~~~~~~L~~L~Ls~ 60 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVE--------------------LIQAFANTPASVTSLNLSG 60 (362)
T ss_dssp EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHH--------------------HHHHHHTCCTTCCEEECCS
T ss_pred ccccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHH--------------------HHHHHHhCCCceeEEECcC
Confidence 356778888765444 5555666888888888877544310 013334444 455555555
Q ss_pred CCCCCccchhhhhc----CCCccEEECCCCcCCCccccc----ccCC-CCCCeEeCCCCcCcCCCCCC--------CCCc
Q 042944 394 TEISDAVPSWFWDL----SPNLYYLNLSHNHLEGTVLDL----SLNY-AGYPGIDLSSNDFEGPVPPV--------PGNV 456 (637)
Q Consensus 394 n~i~~~~~~~~~~~----~~~L~~L~l~~n~i~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~--------~~~L 456 (637)
|.+.+..+..+... +++|++|++++|.+++..+.. +..+ ++|+.|++++|.+++..+.. ..+|
T Consensus 61 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 55554444333332 245555555555554433322 2222 45555555555554433211 2466
Q ss_pred cEEEcccccccCcccccc----cccCCCccEEeCCCCCCcccCchhh----hcc-CCCcEEeccCccCCCCccccccccC
Q 042944 457 TSLNLSNNKFSGPISSLC----SISGEYFSYLDVSDNLLSGELPDCL----LRW-QALAVLNLANNNFSGNFLTFFVGEI 527 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~ 527 (637)
++|++++|++++...... ....++|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+.... .+
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~----~l 216 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA----EL 216 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH----HH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH----HH
Confidence 677777776664332211 1111478888888888876665444 334 5888888888887743221 24
Q ss_pred CccccC-CCCCcEEEcCCCcccccCCh---hhhhcCCCCcEEeccCcccccc-------CCccccCCCCCcEeeCCCCcc
Q 042944 528 PPSLKK-CNELKIIDAGDNKFSGTIPA---WIGDTLPKLAILSLRSNQFHGS-------IPRNLCRLSKIQLLDFSLNSI 596 (637)
Q Consensus 528 ~~~l~~-l~~L~~L~ls~n~l~~~~~~---~l~~~l~~L~~L~L~~n~~~~~-------~~~~l~~l~~L~~L~ls~n~l 596 (637)
+..+.. .++|++|++++|.+++..+. .+++.+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 444544 35788888888888743332 2234568888888888884322 334567788888888888888
Q ss_pred ccc
Q 042944 597 SGA 599 (637)
Q Consensus 597 ~~~ 599 (637)
.+.
T Consensus 297 ~~~ 299 (362)
T 3goz_A 297 HPS 299 (362)
T ss_dssp CGG
T ss_pred CCc
Confidence 755
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.7e-22 Score=205.42 Aligned_cols=253 Identities=19% Similarity=0.147 Sum_probs=194.4
Q ss_pred EeccCCcCCCCccccccCCCCccEEEeeCCCCCCccc----hhhhhcCC-CccEEECCCCcCCCcccccccCC-----CC
Q 042944 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVP----SWFWDLSP-NLYYLNLSHNHLEGTVLDLSLNY-----AG 434 (637)
Q Consensus 365 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~----~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~~-----~~ 434 (637)
+.++.+.+.+..|..+...++|++|++++|.+.+..+ ..+... + +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5677777777777877778889999999999998777 444444 5 89999999999988766656553 99
Q ss_pred CCeEeCCCCcCcCCCCCC-------C-CCccEEEcccccccCccccccccc----CCCccEEeCCCCCCcccCc----hh
Q 042944 435 YPGIDLSSNDFEGPVPPV-------P-GNVTSLNLSNNKFSGPISSLCSIS----GEYFSYLDVSDNLLSGELP----DC 498 (637)
Q Consensus 435 L~~L~l~~n~~~~~~~~~-------~-~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~----~~ 498 (637)
|+.|++++|.+++..+.. . ++|++|++++|++++......... .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998655431 2 799999999999987665433211 2699999999999986544 44
Q ss_pred hhccC-CCcEEeccCccCCCCccccccccCCccccCC-CCCcEEEcCCCccccc----CChhhhhcCCCCcEEeccCccc
Q 042944 499 LLRWQ-ALAVLNLANNNFSGNFLTFFVGEIPPSLKKC-NELKIIDAGDNKFSGT----IPAWIGDTLPKLAILSLRSNQF 572 (637)
Q Consensus 499 l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l-~~L~~L~ls~n~l~~~----~~~~l~~~l~~L~~L~L~~n~~ 572 (637)
+..++ +|++|++++|++++..+. .+...+..+ ++|++|++++|.+++. ++..+....++|++|+|++|++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCA----ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHH----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HhcCCccccEeeecCCCCchhhHH----HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 45565 999999999999854332 122244556 5999999999999842 4555553356999999999999
Q ss_pred cccCC----ccccCCCCCcEeeCCCCcccc-------cccccccccccceeeccCCCeeEE
Q 042944 573 HGSIP----RNLCRLSKIQLLDFSLNSISG-------AIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 573 ~~~~~----~~l~~l~~L~~L~ls~n~l~~-------~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
++..+ ..+..+++|+.|++++|.+.+ .+++.+..+++|++|++++|++..
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 85433 345678999999999998443 345578899999999999999853
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=7.7e-22 Score=196.06 Aligned_cols=221 Identities=17% Similarity=0.185 Sum_probs=150.1
Q ss_pred CccEEEeeCCCCCCccchhh---hhcCCCccEEECCCCcCCCcccccc--cCCCCCCeEeCCCCcCcCCCC-------CC
Q 042944 385 NYYFLDISDTEISDAVPSWF---WDLSPNLYYLNLSHNHLEGTVLDLS--LNYAGYPGIDLSSNDFEGPVP-------PV 452 (637)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~---~~~~~~L~~L~l~~n~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~-------~~ 452 (637)
.++.+.+.++.+.+.....+ .. .++|++|++++|.+++..+..+ ..+++|+.|++++|.+.+..+ ..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35556666555543222111 11 1457777777777766666555 667777777777777765333 12
Q ss_pred CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCccc--C--chhhhccCCCcEEeccCccCCCCccccccccCC
Q 042944 453 PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGE--L--PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIP 528 (637)
Q Consensus 453 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 528 (637)
+++|++|++++|++.+..+.... ..++|++|++++|++.+. . +..+..+++|++|++++|+++ .++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~ 213 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------TPT 213 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------CHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------chH
Confidence 56778888888877665544332 227888888888887542 1 233467888888888888886 222
Q ss_pred c----cccCCCCCcEEEcCCCcccccCChhhhhcC---CCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944 529 P----SLKKCNELKIIDAGDNKFSGTIPAWIGDTL---PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601 (637)
Q Consensus 529 ~----~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 601 (637)
. .+..+++|++|++++|.+++.+|..+. .+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++. |
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence 2 246778888899999988865576655 34 68899999999888 6777664 7889999999988853 4
Q ss_pred ccccccccceeeccCCCeeEE
Q 042944 602 KCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 602 ~~l~~l~~L~~l~l~~n~l~~ 622 (637)
. +..+++|++|++++|+|+.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 6788888999999988753
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.9e-20 Score=183.22 Aligned_cols=190 Identities=24% Similarity=0.339 Sum_probs=99.1
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH 194 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~ 194 (637)
++|++|++++|.+.... .+..+ ++|++|++++|.+. .++. +..+++|++|++++|+++.++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 45555555555554321 23333 55555555555554 4443 455555555555555555543 344555555555
Q ss_pred cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCC
Q 042944 195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274 (637)
Q Consensus 195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 274 (637)
+++|.+.+ . +.+..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 114 l~~n~l~~-----------------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 114 LTSTQITD-----------------------------V-TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161 (308)
T ss_dssp CTTSCCCC-----------------------------C-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred CCCCCCCC-----------------------------c-hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC
Confidence 55555442 2 224444445555555554443222 444555555555555
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944 275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+++
T Consensus 162 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 162 QVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEE
T ss_pred cCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeee
Confidence 5543322 4445666666666666654332 556666777777777666532 2566677777777777665
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=5.2e-21 Score=182.49 Aligned_cols=196 Identities=18% Similarity=0.185 Sum_probs=134.5
Q ss_pred CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC-CCchhhhHHHhhcCCCcEEECCC-CCCCCCCCchhccCCCC
Q 042944 89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-LSNSAYHWLFKISSNLLALDLNS-NQLAGPIPDYAFSNMTA 166 (637)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~-n~l~~~l~~~~~~~l~~ 166 (637)
++++|++++|.++.+.+ ..+..+++|++|++++|. ++...+..+..+ ++|++|++++ |.++ .++..+|.++++
T Consensus 32 ~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~-~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLT-YIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCC-EECTTSEECCTT
T ss_pred cccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCee-EcCHHHhCCCCC
Confidence 68888888888877754 345666888888888886 765555555555 7888888887 7777 676657778888
Q ss_pred CCEEEcCCCcccchhhhcCCCCCCc---EEEcCCC-cCCCCchhHhhhcccCCCCccc-EEEcCCCCCCCCcCCcccCCC
Q 042944 167 LQHLNLSLNQISAISKSFGNMCGLK---TLHLFDN-NLTGQLPELFLNLSGCSKNSLE-ILKLGGNKLTGSLPDITEFSS 241 (637)
Q Consensus 167 L~~L~L~~n~l~~l~~~~~~l~~L~---~L~l~~n-~i~~~~~~~l~~l~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~ 241 (637)
|++|++++|+++.+|. +..+++|+ +|++++| .+....+..|..++ +|+ .|++++|.+...++.....++
T Consensus 107 L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-----~L~~~L~l~~n~l~~i~~~~~~~~~ 180 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----NETLTLKLYNNGFTSVQGYAFNGTK 180 (239)
T ss_dssp CCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-----SSEEEEECCSCCCCEECTTTTTTCE
T ss_pred CCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchh-----cceeEEEcCCCCCcccCHhhcCCCC
Confidence 8888888888887766 77777777 8888887 77755556677776 777 777777777644444333466
Q ss_pred ccEEEccCCc-CCCCCCCcCCCC-CCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCC
Q 042944 242 LQELHLFDNK-LDGSFPEKFRKP-SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDS 297 (637)
Q Consensus 242 L~~L~l~~n~-i~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 297 (637)
|++|++++|. ++...+..|..+ ++|+.|++++|++....+. .+++|+.|+++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 7777777773 665555566666 6666666666666543332 4555666655544
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=4.4e-22 Score=204.54 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=83.9
Q ss_pred cCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhh----c---------ccCCCCcccEEE
Q 042944 162 SNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLN----L---------SGCSKNSLEILK 223 (637)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~----l---------~~~~~~~L~~L~ 223 (637)
..+++|++|++++|.+.. ++..+..+++|++|++++|.++...+..+.. + + +|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-----~L~~L~ 165 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-----PLRSII 165 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-----CCCEEE
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-----CCcEEE
Confidence 445555555555555544 4444555555555555555554322222222 1 3 555555
Q ss_pred cCCCCCCC-CcC----CcccCCCccEEEccCCcCCC-----CCCCcCCCCCCCcEEEcCCCCCC-----CCCCCCCCCCC
Q 042944 224 LGGNKLTG-SLP----DITEFSSLQELHLFDNKLDG-----SFPEKFRKPSPLVILNLDGNQLW-----GSLPDLSVFPF 288 (637)
Q Consensus 224 l~~n~~~~-~~~----~~~~~~~L~~L~l~~n~i~~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~ 288 (637)
+++|.+.. ..+ .+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ .....+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 55555441 111 23344455555555554441 11123444555555555555542 11122333555
Q ss_pred CCEEEccCCcCCCC----Chhhhc--CCCCCCEEecCCCcCCC----ccchhhhcCCCCCcEEEccCCccc
Q 042944 289 LTRLDVSDSRLNGT----VSEGLG--RLSKLEFLDLFGNSLEG----MITESHVSNLSKLKYMDFSFNSLA 349 (637)
Q Consensus 289 L~~L~l~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~~~ 349 (637)
|++|++++|.+++. ++..+. .+++|+.|++++|.+.+ ..+.....++++|++|++++|+++
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 55555555555432 233332 25555666665555554 122222244555555555555554
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=5e-20 Score=176.92 Aligned_cols=175 Identities=21% Similarity=0.222 Sum_probs=87.6
Q ss_pred CccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeC
Q 042944 410 NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDV 486 (637)
Q Consensus 410 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 486 (637)
..++++++++.++..... + .+.++.|++++|.+.+..+.. +++|++|++++|++.+..+..+. ..++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEEC
Confidence 455666666666543322 1 145666666666665544432 34555555555555543332221 1255555555
Q ss_pred CCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944 487 SDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565 (637)
Q Consensus 487 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L 565 (637)
++|.+++..+..|..+++|++|++++|.++ .++. .+..+++|++|++++|.++ .++...+..+++|+.|
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK---------SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCC---------CcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEE
Confidence 555555444445555555555555555554 2222 2344555555555555554 3333222245555555
Q ss_pred eccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944 566 SLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 566 ~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 598 (637)
+|++|++++..+..+..+++|+.|++++|++.+
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 555555554444445555555555555555543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2e-20 Score=178.37 Aligned_cols=199 Identities=18% Similarity=0.202 Sum_probs=112.5
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchhccCCCCCCEEEcCC-Ccccchh-hhcCCCCCCc
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYAFSNMTALQHLNLSL-NQISAIS-KSFGNMCGLK 191 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~L~~-n~l~~l~-~~~~~l~~L~ 191 (637)
++|++|++++|.++...+..+..+ ++|++|++++|. ++ .++..+|.++++|++|++++ |+++.++ ..|.++++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 366667777666665544444444 666666666665 55 55555566666666666666 6666654 3456666666
Q ss_pred EEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCC-cCCCCCCCcCCCCCCCc-EE
Q 042944 192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN-KLDGSFPEKFRKPSPLV-IL 269 (637)
Q Consensus 192 ~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~-~L 269 (637)
+|++++|.+.+ .|. +..+. +|+ .|++|++++| .++...+..|..+++|+ .|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~-----~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVY-----STD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCC-----BCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred EEeCCCCCCcc-ccc-ccccc-----ccc--------------------cccEEECCCCcchhhcCcccccchhcceeEE
Confidence 66666666553 222 33333 333 1115555555 55544444555666666 66
Q ss_pred EcCCCCCCCCCCCCCCCCCCCEEEccCCc-CCCCChhhhcCC-CCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCC
Q 042944 270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSR-LNGTVSEGLGRL-SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346 (637)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 346 (637)
++++|.+.......+..++|++|++++|+ ++...+..+..+ ++|+.|++++|.+++. +. ..+++|+.|+++++
T Consensus 162 ~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~---~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 162 KLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS---KGLEHLKELIARNT 236 (239)
T ss_dssp ECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC---TTCTTCSEEECTTC
T ss_pred EcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch---hHhccCceeeccCc
Confidence 66666665444433334566666666663 654445556666 6666666666666543 22 14556666666554
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=6.4e-22 Score=203.31 Aligned_cols=256 Identities=19% Similarity=0.211 Sum_probs=195.7
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCCcccc-cccCCCCCccEEECCCCCCC---chhhhHH-------HhhcCCCcEEECCCC
Q 042944 82 VTITSLASLRDLYLASSTLLSINRPSL-SSMNSSTSLTLLDLSSCGLS---NSAYHWL-------FKISSNLLALDLNSN 150 (637)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~---~~~~~~~-------~~~~~~L~~L~L~~n 150 (637)
..+..+++|++|++++|.+.+..+..+ ..+..+++|++|+|++|.+. +..|..+ ..+ ++|++|++++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCC
Confidence 346778999999999999987643322 34778899999999997543 3334444 344 99999999999
Q ss_pred CCCCC----CCchhccCCCCCCEEEcCCCcccc-----hhhhcCCC---------CCCcEEEcCCCcCCC-Cch---hHh
Q 042944 151 QLAGP----IPDYAFSNMTALQHLNLSLNQISA-----ISKSFGNM---------CGLKTLHLFDNNLTG-QLP---ELF 208 (637)
Q Consensus 151 ~l~~~----l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l---------~~L~~L~l~~n~i~~-~~~---~~l 208 (637)
.+.+. ++. .+..+++|++|++++|.++. ++..+..+ ++|++|++++|.+.. ..+ ..+
T Consensus 105 ~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 105 AFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99842 454 67899999999999999975 34445555 899999999999973 333 466
Q ss_pred hhcccCCCCcccEEEcCCCCCCC-----CcC-CcccCCCccEEEccCCcCC----CCCCCcCCCCCCCcEEEcCCCCCCC
Q 042944 209 LNLSGCSKNSLEILKLGGNKLTG-----SLP-DITEFSSLQELHLFDNKLD----GSFPEKFRKPSPLVILNLDGNQLWG 278 (637)
Q Consensus 209 ~~l~~~~~~~L~~L~l~~n~~~~-----~~~-~~~~~~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~l~~~~~~~ 278 (637)
..++ +|++|++++|.+.. ..+ .+..+++|++|++++|.++ ...+..+..+++|++|++++|.+..
T Consensus 184 ~~~~-----~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 184 QSHR-----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHCT-----TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HhCC-----CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 6777 99999999999873 233 6788999999999999985 3456678899999999999999875
Q ss_pred C-----CCCC--CCCCCCCEEEccCCcCCC----CChhhh-cCCCCCCEEecCCCcCCCccc--hhhhcCCCCCcEEEcc
Q 042944 279 S-----LPDL--SVFPFLTRLDVSDSRLNG----TVSEGL-GRLSKLEFLDLFGNSLEGMIT--ESHVSNLSKLKYMDFS 344 (637)
Q Consensus 279 ~-----~~~~--~~~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~ 344 (637)
. ...+ ..+++|++|++++|.+++ .++..+ .++++|+.|++++|.+++..+ ......+++++.+++.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 4 1223 238999999999999997 366666 568999999999999987653 3233334555544443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=185.60 Aligned_cols=80 Identities=30% Similarity=0.461 Sum_probs=39.2
Q ss_pred CccEEeCCCCCCcccCchhhhcc---CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhh
Q 042944 480 YFSYLDVSDNLLSGELPDCLLRW---QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG 556 (637)
Q Consensus 480 ~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~ 556 (637)
+|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|+++ .+|. +
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~---------~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~- 290 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE---------QVPKGLP--AKLRVLDLSSNRLN-RAPQ-P- 290 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC---------SCCSCCC--SCCSCEECCSCCCC-SCCC-T-
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC---------chhhhhc--CCCCEEECCCCcCC-CCch-h-
Confidence 33444444444443333333333 45555555555555 3343332 45666666666665 3333 2
Q ss_pred hcCCCCcEEeccCcccc
Q 042944 557 DTLPKLAILSLRSNQFH 573 (637)
Q Consensus 557 ~~l~~L~~L~L~~n~~~ 573 (637)
..+++|+.|+|++|+++
T Consensus 291 ~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TSCCCCSCEECSSTTTS
T ss_pred hhCCCccEEECcCCCCC
Confidence 24566666666666654
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=6.6e-21 Score=192.05 Aligned_cols=221 Identities=21% Similarity=0.207 Sum_probs=131.2
Q ss_pred CCccEEECCCCCCCchhhhHHHhh-cCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCc
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKI-SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLK 191 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~-~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~ 191 (637)
..++.++++++.+.+.. +... .+++++|++++|.+.+..+. +..+++|++|++++|.+.. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~~~~---~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCHHH---HHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCHHH---HHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34677777777766322 2221 16788888888877744433 5567888888888887765 666777888888
Q ss_pred EEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCC-CCCC--CcCCcccCCCccEEEccCC-cCCCC-CCCcCCCCC-C
Q 042944 192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGN-KLTG--SLPDITEFSSLQELHLFDN-KLDGS-FPEKFRKPS-P 265 (637)
Q Consensus 192 ~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n-~~~~--~~~~~~~~~~L~~L~l~~n-~i~~~-~~~~l~~l~-~ 265 (637)
+|++++|.+.+..+..+..++ +|++|++++| .++. ....+..+++|++|++++| .+++. .+..+..++ +
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~-----~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNS-----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCT-----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred EEeCcCcccCHHHHHHHhcCC-----CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 888888877766677777666 7888888877 4553 2222556667777777777 65532 233445555 6
Q ss_pred CcEEEcCCCC--CC-C-CCCCCCCCCCCCEEEccCCc-CCCCChhhhcCCCCCCEEecCCCc-CCCccchhhhcCCCCCc
Q 042944 266 LVILNLDGNQ--LW-G-SLPDLSVFPFLTRLDVSDSR-LNGTVSEGLGRLSKLEFLDLFGNS-LEGMITESHVSNLSKLK 339 (637)
Q Consensus 266 L~~L~l~~~~--~~-~-~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~ 339 (637)
|++|++++|. ++ . ....+..+++|++|++++|. +++..+..+..+++|+.|++++|. +... ....+.++++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-HHHHHhcCCCCC
Confidence 6666666663 22 1 11112235566666666665 444444455555666666666653 2111 111344555555
Q ss_pred EEEccCC
Q 042944 340 YMDFSFN 346 (637)
Q Consensus 340 ~L~l~~n 346 (637)
.|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 5555555
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.5e-20 Score=189.48 Aligned_cols=198 Identities=19% Similarity=0.146 Sum_probs=102.0
Q ss_pred CCcEEEcCCCcCCCCchhHhhhc--ccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCC-CCCcCCCCCC
Q 042944 189 GLKTLHLFDNNLTGQLPELFLNL--SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGS-FPEKFRKPSP 265 (637)
Q Consensus 189 ~L~~L~l~~n~i~~~~~~~l~~l--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~ 265 (637)
.++.++++++.+. +..+..+ . +++.|++++|.+....+.+..+++|++|++++|.+++. .+..+..+++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~-----~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQ-----GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHT-----TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCC---HHHHHhhhhc-----cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 3556666665543 3444444 4 66666666666665555555666666666666665533 4444556666
Q ss_pred CcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCC-cCCC-CChhhhcCCCCCCEEecCCC-cCCCccchhhhcCCC-CCcE
Q 042944 266 LVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDS-RLNG-TVSEGLGRLSKLEFLDLFGN-SLEGMITESHVSNLS-KLKY 340 (637)
Q Consensus 266 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~-~L~~ 340 (637)
|++|++++|.+.+..+ .+..+++|++|++++| .+++ ..+..+..+++|+.|++++| .+++......+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 6666666665543222 2333566666666666 4443 23444555666666666666 555432233455566 6666
Q ss_pred EEccCCc--cc-ccccCCCCCCCceeEEeccCCc-CCCCccccccCCCCccEEEeeCC
Q 042944 341 MDFSFNS--LA-LNFSFGWLPPFQLESIGLLHCK-LGPHFPKWLQSQKNYYFLDISDT 394 (637)
Q Consensus 341 L~l~~n~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n 394 (637)
|++++|. ++ ...+..+..+++|++|++++|. ++...+..+..+++|++|++++|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 6666663 22 1111122233344444444444 33333334444444444444444
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=7.6e-19 Score=186.52 Aligned_cols=189 Identities=22% Similarity=0.355 Sum_probs=129.2
Q ss_pred CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccc
Q 042944 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNN 464 (637)
Q Consensus 385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n 464 (637)
+++.|++++|.+.+ .|..+ +++|++|++++|.++.. + ..+++|+.|++++|.++++.. ...+|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC
Confidence 56666666666655 23222 25666666666666632 2 335666677777776666333 3347777777777
Q ss_pred cccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCC
Q 042944 465 KFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGD 544 (637)
Q Consensus 465 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~ 544 (637)
++++... ..++|+.|++++|.+++ +|. .+++|+.|++++|+++ .+|. +. ++|+.|++++
T Consensus 131 ~l~~lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~---------~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 131 QLTMLPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT---------FLPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCSCCCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS---------CCCC-CC--TTCCEEECCS
T ss_pred cCCCCCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC---------Ccch-hh--CCCCEEECcC
Confidence 7766333 23778888888888874 454 4678888888888887 4555 43 7888888888
Q ss_pred CcccccCChhhhhcCCCC-------cEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccc
Q 042944 545 NKFSGTIPAWIGDTLPKL-------AILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA 609 (637)
Q Consensus 545 n~l~~~~~~~l~~~l~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 609 (637)
|.++ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..|..++.
T Consensus 190 N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 190 NLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8887 7776 432 56 88888888888 68888888888888888888888888888877654
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=6.2e-18 Score=162.29 Aligned_cols=179 Identities=20% Similarity=0.175 Sum_probs=133.4
Q ss_pred cccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccC
Q 042944 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSD 296 (637)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~ 296 (637)
..++++++++.+...+..+. +.++.|++++|.+++..+..|..+++|++|++++|.+....+.. ..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 56777777777775554443 47788888888877777777778888888888888877665553 4477888888888
Q ss_pred CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc
Q 042944 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF 376 (637)
Q Consensus 297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 376 (637)
|.+++..+..+..+++|+.|++++|.+.+. +...+.++++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 888776666777788888888888887753 3345677888888888888887666666777777778888777777666
Q ss_pred cccccCCCCccEEEeeCCCCCCc
Q 042944 377 PKWLQSQKNYYFLDISDTEISDA 399 (637)
Q Consensus 377 ~~~l~~~~~L~~L~l~~n~i~~~ 399 (637)
+..+..+++|+.|++++|.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777888888888888887665
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2e-18 Score=169.29 Aligned_cols=193 Identities=23% Similarity=0.310 Sum_probs=119.7
Q ss_pred CchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhh
Q 042944 54 INSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYH 133 (637)
Q Consensus 54 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 133 (637)
...+.....+.+.......... +..+++|++|++++|.+.++ +.+..+++|++|++++|.+++..+
T Consensus 20 d~~l~~~~~~~l~~~~~~~~~~--------~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~- 85 (291)
T 1h6t_A 20 DDAFAETIKDNLKKKSVTDAVT--------QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP- 85 (291)
T ss_dssp SHHHHHHHHHHTTCSCTTSEEC--------HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-
T ss_pred CHHHHHHHHHHhcCCCcccccc--------hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc-
Confidence 3344444445555554443332 45677788888888777765 335666777888888777776544
Q ss_pred HHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhccc
Q 042944 134 WLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSG 213 (637)
Q Consensus 134 ~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 213 (637)
+..+ ++|++|++++|.+. .++. +..+++|++|++++|+++.+ ..+..+++|++|++++|.+.+. ..+..++
T Consensus 86 -l~~l-~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~- 156 (291)
T 1h6t_A 86 -LANL-KNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLT- 156 (291)
T ss_dssp -GTTC-TTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-
T ss_pred -cccC-CCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCC-
Confidence 4444 77777777777776 5554 77777777777777777776 3466777777777777776643 4455555
Q ss_pred CCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCC
Q 042944 214 CSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276 (637)
Q Consensus 214 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 276 (637)
+|++|++++|.+....+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++
T Consensus 157 ----~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 157 ----KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ----TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEE
T ss_pred ----CCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcc
Confidence 66666666666664433 55555666666666655532 1244455555555555444
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=5.3e-18 Score=180.02 Aligned_cols=179 Identities=19% Similarity=0.290 Sum_probs=151.3
Q ss_pred CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCC
Q 042944 409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSD 488 (637)
Q Consensus 409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 488 (637)
.+++.|++++|.+++.... + +++|+.|++++|.++.+. ..+++|++|++++|++++. +. .. .+|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~i-p~-l~---~~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN-L--PPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTL-PE-LP---ASLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC-C--CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCC-CC-CC---TTCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHh-H--cCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCc-ch-hh---cCCCEEECCC
Confidence 4899999999999874433 3 478999999999999544 6789999999999999984 43 22 4999999999
Q ss_pred CCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEecc
Q 042944 489 NLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLR 568 (637)
Q Consensus 489 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~ 568 (637)
|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|. +. ++|+.|+|+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~---------~lp~---~l~~L~~L~Ls~N~L~-~lp~-l~---~~L~~L~Ls 188 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLT---------MLPE---LPTSLEVLSVRNNQLT-FLPE-LP---ESLEALDVS 188 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCS---------CCCC---CCTTCCEEECCSSCCS-CCCC-CC---TTCCEEECC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccC---------cCCC---cCCCcCEEECCCCCCC-Ccch-hh---CCCCEEECc
Confidence 99996 665 6899999999999998 5665 5789999999999998 5887 32 899999999
Q ss_pred CccccccCCccccCCCCC-------cEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944 569 SNQFHGSIPRNLCRLSKI-------QLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622 (637)
Q Consensus 569 ~n~~~~~~~~~l~~l~~L-------~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 622 (637)
+|+++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|+++.
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999 7777 654 78 99999999999 689999999999999999999963
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=3.7e-18 Score=172.46 Aligned_cols=220 Identities=15% Similarity=0.095 Sum_probs=137.6
Q ss_pred eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccE-EECCCCcCCCcccccccCCCCCCeEeC
Q 042944 362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYY-LNLSHNHLEGTVLDLSLNYAGYPGIDL 440 (637)
Q Consensus 362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~-L~l~~n~i~~~~~~~~~~~~~L~~L~l 440 (637)
+++|++++|+++...+..|.++++|++|+|++|.+.+..+...+..++++.+ +.+.+|+++...+..+..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 4444444444443333445566666666666666554444333222344443 444556666666666666677777777
Q ss_pred CCCcCcCCCCCC---CCCccEEEccc-ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccC-ccC
Q 042944 441 SSNDFEGPVPPV---PGNVTSLNLSN-NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLAN-NNF 515 (637)
Q Consensus 441 ~~n~~~~~~~~~---~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l 515 (637)
++|.+....+.. ..++..+++.+ +++....+..+......++.|++++|.++...+.++ ..++|++|++++ |.+
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNL 190 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTC
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcc
Confidence 777666544433 23455677655 444433333222222578899999999985444444 557899999985 666
Q ss_pred CCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944 516 SGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN 594 (637)
Q Consensus 516 ~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n 594 (637)
+ .+|. .+..+++|++|++++|+++ .+|... +.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 191 ~---------~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 191 E---------ELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp C---------CCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred c---------CCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 6 5665 4688999999999999998 888754 4567777766654333677 4788999999999876
Q ss_pred cc
Q 042944 595 SI 596 (637)
Q Consensus 595 ~l 596 (637)
..
T Consensus 257 ~~ 258 (350)
T 4ay9_X 257 SH 258 (350)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5e-18 Score=159.01 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=73.5
Q ss_pred CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+.++++++.++.+....++++++|++++|++.+..+..+ ...++|++|++++|.+++..+..|.++++|+.|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 455666666555443344555555555555554333211 1124555555555555544455555555555555555555
Q ss_pred CCCccccccccCCcc-ccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944 516 SGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN 594 (637)
Q Consensus 516 ~~~~~~~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n 594 (637)
+ .+|.. +..+++|++|++++|.+++..+..+ ..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 93 ~---------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 93 T---------ELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp C---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C---------ccCHhHccCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 4 23322 3445555555555555542222222 24555555555555555433344555555555555555
Q ss_pred ccc
Q 042944 595 SIS 597 (637)
Q Consensus 595 ~l~ 597 (637)
++.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 544
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=157.52 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=102.8
Q ss_pred CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+.+++++|.++.+....+..+++|++++|++++..+...+...++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 46778887777654445566777777777777654443333347777777777777766666777777777777777777
Q ss_pred CCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCc
Q 042944 516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNS 595 (637)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~ 595 (637)
++ ..+..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|++++..|..|..+++|+.|++++|+
T Consensus 94 ~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 94 EN--------VQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CC--------CCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred Cc--------cCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 62 1223356677777777777777643344444 57777777777777776556677777777777777777
Q ss_pred cccc
Q 042944 596 ISGA 599 (637)
Q Consensus 596 l~~~ 599 (637)
+.+.
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 7643
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=7.1e-18 Score=170.36 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=49.9
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcE-EEccCC
Q 042944 268 ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKY-MDFSFN 346 (637)
Q Consensus 268 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l~~n 346 (637)
+++.++++++.++..+ .+++++|++++|.++...+.+|.++++|+.|++++|.+.+.++...|.+++++.+ +.+.+|
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3444444444333222 2455566666666554444455666666666666666554444445555555543 333445
Q ss_pred cccccccCCCCCCCceeEEeccCCcC
Q 042944 347 SLALNFSFGWLPPFQLESIGLLHCKL 372 (637)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~ 372 (637)
.+....+..+..+++|++|++.+|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred cccccCchhhhhcccccccccccccc
Confidence 55443333333333344444433333
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.6e-17 Score=162.86 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEE
Q 042944 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTL 193 (637)
Q Consensus 114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L 193 (637)
+++|++|++++|.+.... .+..+ ++|++|++++|.++ .++. +.++++|++|++++|+++.++. +..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred cCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 345555555555554331 13333 55555555555554 3433 4455555555555555554432 4445555555
Q ss_pred EcCCCcCC
Q 042944 194 HLFDNNLT 201 (637)
Q Consensus 194 ~l~~n~i~ 201 (637)
++++|.+.
T Consensus 118 ~L~~n~i~ 125 (291)
T 1h6t_A 118 SLEHNGIS 125 (291)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 55555444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.7e-17 Score=178.32 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=160.0
Q ss_pred cCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhh
Q 042944 53 PINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAY 132 (637)
Q Consensus 53 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 132 (637)
+...+..+..+.+..+....... +..+++|+.|++++|.+..+ +.+..+++|++|+|++|.+.+..+
T Consensus 16 pd~~l~~l~~l~l~~~~i~~~~~--------~~~L~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~ 82 (605)
T 1m9s_A 16 PDDAFAETIKDNLKKKSVTDAVT--------QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP 82 (605)
T ss_dssp CSHHHHHHHHHHTTCSCTTSEEC--------HHHHTTCCCCBCTTCCCCCC-----TTGGGCTTCCEEECTTSCCCCCGG
T ss_pred CcHHHHHHHHHhccCCCcccccc--------hhcCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEeeCCCCCCChh
Confidence 44555666667777766555443 56788999999999998876 357778999999999999987665
Q ss_pred hHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcc
Q 042944 133 HWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212 (637)
Q Consensus 133 ~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 212 (637)
+..+ ++|++|+|++|.+. .++. +..+++|++|+|++|++..++ .+..+++|+.|++++|.+.+. ..+..++
T Consensus 83 --l~~l-~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~ 153 (605)
T 1m9s_A 83 --LTNL-KNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLT 153 (605)
T ss_dssp --GGGC-TTCCEEECCSSCCC-CCTT--STTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred --hccC-CCCCEEECcCCCCC-CChh--hccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccC
Confidence 5665 99999999999998 6764 889999999999999999874 588899999999999998754 5677777
Q ss_pred cCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCC
Q 042944 213 GCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS 279 (637)
Q Consensus 213 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 279 (637)
+|+.|++++|.+....+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+...
T Consensus 154 -----~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 154 -----KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -----TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -----CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 99999999999886655 88888999999999988754 4578888888888888887643
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.1e-17 Score=155.66 Aligned_cols=179 Identities=19% Similarity=0.248 Sum_probs=98.9
Q ss_pred EEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccccccc
Q 042944 388 FLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFS 467 (637)
Q Consensus 388 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~ 467 (637)
.++++++.+..... . .++++++|++++|.+++..+..+..+++|++|++++|++.+..+..+
T Consensus 11 ~v~c~~~~l~~~p~-~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------- 72 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-G---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF-------------- 72 (208)
T ss_dssp EEECCSSCCSSCCS-C---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--------------
T ss_pred EEEecCCCccCCCC-C---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--------------
Confidence 44555555544221 1 13566777777777665555555566666666666665554332211
Q ss_pred CcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCCcEEEcCCCc
Q 042944 468 GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNK 546 (637)
Q Consensus 468 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~ 546 (637)
...++|++|++++|.+++..+..+..+++|++|++++|.++ .++. .+..+++|++|++++|.
T Consensus 73 --------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 73 --------NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ---------SLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp --------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSC
T ss_pred --------CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc---------ccCHhHhccCCcCCEEECCCCc
Confidence 11145555555555555444445566666666666666665 2222 34556666666666666
Q ss_pred ccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccc
Q 042944 547 FSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA 609 (637)
Q Consensus 547 l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 609 (637)
++ .++...+..+++|+.|++++|++. +.+++|+.|+++.|.+++.+|+.++.++.
T Consensus 136 l~-~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 136 LK-SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cc-eeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 65 444443335666666666666554 22345666666666666666666665543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=168.99 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=128.3
Q ss_pred CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+.++++++.+..+....+..++.|++++|++++..+..+....++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 45666666666544444566778888888777665554432348888888888888877777888888899999999888
Q ss_pred CCCccccccccCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCcc-c---cCCCCCcEee
Q 042944 516 SGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN-L---CRLSKIQLLD 590 (637)
Q Consensus 516 ~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~-l---~~l~~L~~L~ 590 (637)
+ .++ ..+..+++|++|++++|.+++..+..+. .+++|+.|+|++|++++ +|.. | ..+++|+.|+
T Consensus 101 ~---------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 101 H---------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp C---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEE
T ss_pred C---------cCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEE
Confidence 7 333 3577888899999999988743344444 68889999999998884 5444 3 5688889999
Q ss_pred CCCCccccccccccccccc--ceeeccCCCeeE
Q 042944 591 FSLNSISGAIPKCINNLTA--MVEKASSNSTIT 621 (637)
Q Consensus 591 ls~n~l~~~~p~~l~~l~~--L~~l~l~~n~l~ 621 (637)
|++|++++..+..|..++. |+.|++++|++.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999888665567777776 478888888886
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.2e-17 Score=155.73 Aligned_cols=153 Identities=22% Similarity=0.202 Sum_probs=101.2
Q ss_pred CCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCcc
Q 042944 435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN 514 (637)
Q Consensus 435 L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 514 (637)
.+.++.+++.+..+....+++|++|++++|++++..+..+. ..++|+.|++++|.++...+..|..+++|+.|++++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 45677777777665555567777777777777765443332 22677777777777765555566777777777777777
Q ss_pred CCCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCC
Q 042944 515 FSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL 593 (637)
Q Consensus 515 l~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~ 593 (637)
++ .++. .+..+++|++|++++|.++ .+|..+. .+++|+.|+|++|++++..+..+..+++|+.|++++
T Consensus 100 l~---------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 100 LT---------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CC---------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CC---------ccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 66 3333 3566777777777777776 6666665 577777777777777744445566677777777777
Q ss_pred Cccccc
Q 042944 594 NSISGA 599 (637)
Q Consensus 594 n~l~~~ 599 (637)
|++...
T Consensus 169 N~~~c~ 174 (229)
T 3e6j_A 169 NPWDCE 174 (229)
T ss_dssp SCBCTT
T ss_pred CCccCC
Confidence 776644
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=152.89 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=112.7
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCc-hhhhccCCCcEEeccCccCCCCccccccccCCccccCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP-DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN 535 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~ 535 (637)
+++++++|.++..+..+. +.+++|++++|.+++..+ ..|..+++|+.|++++|.+++ ..+..+..++
T Consensus 14 ~~l~~s~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--------i~~~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--------IEEGAFEGAS 81 (220)
T ss_dssp TEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--------ECTTTTTTCT
T ss_pred CEeEeCCCCcccCccCCC----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--------ECHHHhCCCC
Confidence 577888887775443221 566788888888876533 457788888888888888772 2223577788
Q ss_pred CCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944 536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS 615 (637)
Q Consensus 536 ~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l 615 (637)
+|++|++++|.++ .++...+..+++|++|+|++|++++..|..|..+++|+.|++++|.+++..|..|..+++|++|++
T Consensus 82 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 82 GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 8888888888887 555554446888888888888888666777888888888888888888777788888888888888
Q ss_pred CCCeeE
Q 042944 616 SNSTIT 621 (637)
Q Consensus 616 ~~n~l~ 621 (637)
++|+++
T Consensus 161 ~~N~l~ 166 (220)
T 2v70_A 161 LANPFN 166 (220)
T ss_dssp CSCCEE
T ss_pred cCcCCc
Confidence 888875
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.7e-17 Score=178.25 Aligned_cols=191 Identities=20% Similarity=0.300 Sum_probs=147.9
Q ss_pred CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH 194 (637)
Q Consensus 115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~ 194 (637)
..+..+++..+.+.+... +..+ ++|+.|++++|.+. .++. +..+++|++|+|++|++..++. +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEE
Confidence 456667778777775544 4555 88999999999987 7765 8889999999999999998866 88899999999
Q ss_pred cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCC
Q 042944 195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274 (637)
Q Consensus 195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~ 274 (637)
+++|.+.+ . ..+..++ +|+.|++++|.+.. ++.+..+++|+.|++++|.+++. ..+..+++|+.|++++|
T Consensus 94 Ls~N~l~~-l-~~l~~l~-----~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLK-----KLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CCSSCCCC-C-TTSTTCT-----TCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CcCCCCCC-C-hhhccCC-----CCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 99998874 2 3566666 88888888888885 45677888888888888888754 56777888888888888
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944 275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 325 (637)
.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 164 ~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 164 QISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 8776555 55677888888888877753 346777778888888777765
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.7e-16 Score=147.55 Aligned_cols=149 Identities=23% Similarity=0.290 Sum_probs=71.5
Q ss_pred cEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI 221 (637)
Q Consensus 143 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~ 221 (637)
+.++++++.++ .+|. .-.++|++|++++|+++.++. .|.++++|++|++++|.+....+..|..++ +|++
T Consensus 10 ~~v~c~~~~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~ 80 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-----SLTY 80 (208)
T ss_dssp TEEECCSSCCS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-----TCCE
T ss_pred CEEEecCCCcc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-----CcCE
Confidence 34556666655 5554 123456666666666665433 345566666666666655544444444444 5555
Q ss_pred EEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccCCcCC
Q 042944 222 LKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDSRLN 300 (637)
Q Consensus 222 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~ 300 (637)
|++++|.+.. ..+..+..+++|++|++++|.+....+.. ..+++|++|++++|.++
T Consensus 81 L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 81 LNLSTNQLQS-----------------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp EECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCCc-----------------------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 5555554443 33333344444444444444443333221 22444444444444444
Q ss_pred CCChhhhcCCCCCCEEecCCCcC
Q 042944 301 GTVSEGLGRLSKLEFLDLFGNSL 323 (637)
Q Consensus 301 ~~~~~~l~~l~~L~~L~l~~n~~ 323 (637)
+..+..+..+++|+.|++++|.+
T Consensus 138 ~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 138 SVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB
T ss_pred eeCHHHhccCCCccEEEecCCCe
Confidence 33333344445555555555543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.5e-16 Score=153.37 Aligned_cols=173 Identities=24% Similarity=0.311 Sum_probs=123.2
Q ss_pred cCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhh
Q 042944 53 PINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAY 132 (637)
Q Consensus 53 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 132 (637)
+...+..+..++++.+....... +..+++|++|++++|.+.++ +.+..+++|++|++++|.+++..+
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~--------~~~l~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~L~~N~i~~~~~ 80 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVS--------QKELSGVQNFNGDNSNIQSL-----AGMQFFTNLKELHLSHNQISDLSP 80 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC--------HHHHTTCSEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG
T ss_pred CCHHHHHHHHHHhcCCCcccccc--------hhhcCcCcEEECcCCCcccc-----hHHhhCCCCCEEECCCCccCCChh
Confidence 44456667777777776654432 56778888888888888765 346667888888888888876554
Q ss_pred hHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcc
Q 042944 133 HWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212 (637)
Q Consensus 133 ~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 212 (637)
+..+ ++|++|++++|.++ .++. +.. ++|++|++++|+++.++ .+.++++|++|++++|.+++. + .+..++
T Consensus 81 --l~~l-~~L~~L~L~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~ 150 (263)
T 1xeu_A 81 --LKDL-TKLEELSVNRNRLK-NLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLS 150 (263)
T ss_dssp --GTTC-SSCCEEECCSSCCS-CCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred --hccC-CCCCEEECCCCccC-CcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence 5555 88888888888887 6665 334 78888888888888874 477888888888888887643 2 566666
Q ss_pred cCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC
Q 042944 213 GCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG 254 (637)
Q Consensus 213 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 254 (637)
+|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 151 -----~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 151 -----KLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -----TCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred -----CCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 777777777777644 556666666666666666653
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.8e-16 Score=148.36 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=128.2
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE 536 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~ 536 (637)
+.++++++.++..+..+. ++++.|++++|.++...+..|..+++|+.|++++|.+++ ..|..+..+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------LAPDAFQGLRS 81 (220)
T ss_dssp TEEECTTSCCSSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------ECTTTTTTCSS
T ss_pred CEEEcCCCCcCcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------cCHHHhhCCcC
Confidence 578888888876544332 788999999999987777788899999999999999872 33667888899
Q ss_pred CcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccC
Q 042944 537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASS 616 (637)
Q Consensus 537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~ 616 (637)
|++|++++|.++ .+|...+..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 82 L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 999999999998 7787776678999999999999987778888899999999999999997777788999999999999
Q ss_pred CCeeEE
Q 042944 617 NSTITH 622 (637)
Q Consensus 617 ~n~l~~ 622 (637)
+|++..
T Consensus 161 ~N~~~c 166 (220)
T 2v9t_B 161 QNPFIC 166 (220)
T ss_dssp SSCEEC
T ss_pred CCCcCC
Confidence 998853
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.6e-19 Score=191.24 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=154.4
Q ss_pred cCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCc-------------CCCcccccccCCCCCCeEe-CCCCcCc
Q 042944 381 QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNH-------------LEGTVLDLSLNYAGYPGID-LSSNDFE 446 (637)
Q Consensus 381 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~~~~~~~L~~L~-l~~n~~~ 446 (637)
..+++|+.|++++|.+. ..|..+..+ ++|++|++++|. ..+..+..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 44666666677666665 345555443 566666665553 3445556666677777776 5555432
Q ss_pred CCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcccccccc
Q 042944 447 GPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGE 526 (637)
Q Consensus 447 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 526 (637)
+|+.+.+++|.++...+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .
T Consensus 424 --------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~---------~ 477 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR---------A 477 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC---------C
T ss_pred --------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc---------c
Confidence 56666777776654322 468999999999985 666 999999999999999998 7
Q ss_pred CCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccC-CccccCCCCCcEeeCCCCcccccccc---
Q 042944 527 IPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI-PRNLCRLSKIQLLDFSLNSISGAIPK--- 602 (637)
Q Consensus 527 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p~--- 602 (637)
+|..+..+++|++|++++|.++ .+| .+. .+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCC-CCG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred cchhhhcCCCCCEEECCCCCCC-CCc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 8889999999999999999998 577 566 6999999999999999665 89999999999999999999966543
Q ss_pred cccccccceeecc
Q 042944 603 CINNLTAMVEKAS 615 (637)
Q Consensus 603 ~l~~l~~L~~l~l 615 (637)
.+..+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 2345888888864
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=5e-16 Score=146.45 Aligned_cols=151 Identities=18% Similarity=0.288 Sum_probs=100.8
Q ss_pred ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCC
Q 042944 456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKC 534 (637)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l 534 (637)
.+.++.++++++..+..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+. .+|. .+..+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---------~i~~~~~~~l 87 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---------ALPVGVFDSL 87 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTC
T ss_pred CCEeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---------CcChhhcccC
Confidence 4566676666654443322 66777777777777666666777777777777777765 3433 34667
Q ss_pred CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeec
Q 042944 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKA 614 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ 614 (637)
++|++|++++|.++ .++...+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+.+..+..|..+++|+.|+
T Consensus 88 ~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 88 TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 77777777777776 555554445777777777777776 6666677777777777777777755555677777777777
Q ss_pred cCCCeeE
Q 042944 615 SSNSTIT 621 (637)
Q Consensus 615 l~~n~l~ 621 (637)
+++|++.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 7777664
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=145.77 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=90.8
Q ss_pred cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944 85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM 164 (637)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l 164 (637)
..+++|++|++++|.+.++ +.+..+++|++|++++|.+.... .+..+ ++|++|++++|.+++..+. .+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~l~~n~l~~~~~~-~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHATNYN--PISGL-SNLERLRIMGKDVTSDKIP-NLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-----TTGGGCTTCSEEEEESCCCSCCG--GGTTC-TTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred hhcCCccEEeccCCCccCh-----HHHhcCCCCCEEEccCCCCCcch--hhhcC-CCCCEEEeECCccCcccCh-hhcCC
Confidence 4566777777777777654 23555677777777777655332 34444 6777777777776632333 46666
Q ss_pred CCCCEEEcCCCcccc-hhhhcCCCCCCcEEEcCCCc-CCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCc
Q 042944 165 TALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNN-LTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL 242 (637)
Q Consensus 165 ~~L~~L~L~~n~l~~-l~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L 242 (637)
++|++|++++|+++. .+..+..+++|++|++++|. +. ..+ .+..++ +|+.|++++|.+... +.+..+++|
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~-----~L~~L~l~~n~i~~~-~~l~~l~~L 183 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP-----ELKSLNIQFDGVHDY-RGIEDFPKL 183 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS-----SCCEEECTTBCCCCC-TTGGGCSSC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC-----CCCEEECCCCCCcCh-HHhccCCCC
Confidence 777777777776665 45566666677777776665 44 233 455555 666666666666532 245555556
Q ss_pred cEEEccCCcCC
Q 042944 243 QELHLFDNKLD 253 (637)
Q Consensus 243 ~~L~l~~n~i~ 253 (637)
++|++++|.+.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 66666555543
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.4e-16 Score=144.97 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=131.1
Q ss_pred CCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc-hhhhcCCCCCC
Q 042944 112 NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGL 190 (637)
Q Consensus 112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~l~~L 190 (637)
+.+++|++|++++|.+.... .+..+ ++|++|++++|.+. .++ .+..+++|++|++++|+++. .+..+.++++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 44589999999999998533 46666 99999999999886 665 48999999999999999997 67889999999
Q ss_pred cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEE
Q 042944 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVIL 269 (637)
Q Consensus 191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 269 (637)
++|++++|.+.+..+..+..++ +|++|++++|. +.. ++.+..+++|++|++++|.+++.. .+..+++|+.|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~-----~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLP-----KVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCS-----SCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred CEEEecCCccCcHhHHHHhhCC-----CCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence 9999999999987889999988 99999999998 764 457899999999999999998643 78899999999
Q ss_pred EcCCCCCCC
Q 042944 270 NLDGNQLWG 278 (637)
Q Consensus 270 ~l~~~~~~~ 278 (637)
++++|++..
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998753
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=9.9e-17 Score=154.59 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=26.0
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~ 201 (637)
++|++|++++|.+. .++. +..+++|++|++++|+++.++. +.++++|++|++++|.+.
T Consensus 41 ~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp TTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred CcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence 44444444444444 3332 4444444444444444444433 444444444444444443
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=1.7e-16 Score=160.83 Aligned_cols=173 Identities=27% Similarity=0.332 Sum_probs=115.6
Q ss_pred cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHH-hhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944 91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLF-KISSNLLALDLNSNQLAGPIPDYAFSNMTALQH 169 (637)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 169 (637)
+.++++++.+..++ ..+. +.+++|+|++|.++...+..+. .+ ++|++|++++|.+. .++..+|.++++|++
T Consensus 21 ~~l~c~~~~l~~iP----~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVP----QSLP--SYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCC----SSCC--TTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccC----ccCC--CCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCC-ccChhhccCCCCCCE
Confidence 57788888777764 2222 4578888888888766555444 44 88888888888887 666657888888888
Q ss_pred EEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCc----ccCCCccE
Q 042944 170 LNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDI----TEFSSLQE 244 (637)
Q Consensus 170 L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~L~~ 244 (637)
|+|++|+++.++. .|.++++|++|++++|.+....+..|..++ +|+.|++++|.+...+... ..+++|+.
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----cCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 8888888887643 577888888888888888766677777777 7777777777777544433 34556666
Q ss_pred EEccCCcCCCCCCCcCCCCCC--CcEEEcCCCCC
Q 042944 245 LHLFDNKLDGSFPEKFRKPSP--LVILNLDGNQL 276 (637)
Q Consensus 245 L~l~~n~i~~~~~~~l~~l~~--L~~L~l~~~~~ 276 (637)
|++++|.++...+..+..++. ++.|++++|++
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 666666665443344444443 24444444443
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.3e-16 Score=140.13 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=111.1
Q ss_pred CCccEEeCCCCCCc-ccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944 479 EYFSYLDVSDNLLS-GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557 (637)
Q Consensus 479 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 557 (637)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.++ .+ ..+..+++|++|++++|.+++.+|..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------SV-SNLPKLPKLKKLELSENRIFGGLDMLAE- 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---------CC-SSCCCCSSCCEEEEESCCCCSCCCHHHH-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---------Ch-hhhccCCCCCEEECcCCcCchHHHHHHh-
Confidence 77888888888887 567777888999999999999988 33 5677889999999999999855666554
Q ss_pred cCCCCcEEeccCccccccCC--ccccCCCCCcEeeCCCCccccccc---ccccccccceeeccCCCeeEEEE
Q 042944 558 TLPKLAILSLRSNQFHGSIP--RNLCRLSKIQLLDFSLNSISGAIP---KCINNLTAMVEKASSNSTITHIY 624 (637)
Q Consensus 558 ~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~l~~n~l~~~~ 624 (637)
.+++|+.|++++|++++ +| ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+..++
T Consensus 93 ~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp HCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred hCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 69999999999999984 43 678899999999999999985544 48889999999999999887765
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=2.2e-15 Score=137.71 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=99.0
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCch-hhhccCCCcEEeccCccCCCCccccccccCCccccCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD-CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN 535 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~ 535 (637)
+++++++++++..+..+. +++++|++++|.+++..+. .+..+++|+.|++++|.+++ ..|..+..++
T Consensus 11 ~~l~~s~~~l~~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--------IEPNAFEGAS 78 (192)
T ss_dssp TEEECTTSCCSSCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--------BCTTTTTTCT
T ss_pred CEEEcCCCCcCcCccCCC----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--------cCHhHcCCcc
Confidence 678888888865443222 5788888888888765553 47888888888888888873 3356677888
Q ss_pred CCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944 536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601 (637)
Q Consensus 536 ~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 601 (637)
+|++|++++|.+++..+..+. .+++|++|+|++|++++..|..+..+++|++|++++|++.+..+
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888888888888744443344 68888888888888887778888888888888888888876543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=133.05 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=108.0
Q ss_pred CCccEEeCCCCCCc-ccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944 479 EYFSYLDVSDNLLS-GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557 (637)
Q Consensus 479 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 557 (637)
++++.|++++|.++ +.+|..+..+++|+.|++++|.++ .+ ..+..+++|++|++++|.+++.+|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~- 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------SI-ANLPKLNKLKKLELSDNRVSGGLEVLAE- 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---------CC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---------Cc-hhhhcCCCCCEEECCCCcccchHHHHhh-
Confidence 67888888888887 567788889999999999999988 33 5677899999999999999855666554
Q ss_pred cCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCccccccc---ccccccccceeeccCC
Q 042944 558 TLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGAIP---KCINNLTAMVEKASSN 617 (637)
Q Consensus 558 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~l~~ 617 (637)
.+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 699999999999999853 34788999999999999999996655 5789999999999874
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=135.39 Aligned_cols=127 Identities=22% Similarity=0.243 Sum_probs=80.5
Q ss_pred cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE 536 (637)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~ 536 (637)
+.+++++++++..+..+. +++++|++++|.++ .+|..|..+++|+.|++++|.|++ ..+..+..+++
T Consensus 13 ~~l~~~~~~l~~ip~~~~----~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~--------i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP----RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST--------LSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCSSCCSCCC----TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC--------CCTTTTTTCTT
T ss_pred CEEEcCCCCCCcCCCCCC----CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE--------eCHhHccCCCC
Confidence 466777777664433221 56777777777776 455667777777777777777662 12234666777
Q ss_pred CcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944 537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597 (637)
Q Consensus 537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~ 597 (637)
|++|++++|.++ .++...+..+++|+.|+|++|+++...+..|..+++|+.|++++|++.
T Consensus 80 L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777777777776 444433335677777777777776444445666777777777777665
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=6.9e-16 Score=154.38 Aligned_cols=285 Identities=18% Similarity=0.154 Sum_probs=140.1
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCC-CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC-
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNS-STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN- 163 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~- 163 (637)
.++++++|.++++ +.. ..+..+.. +++|++|+|++|++...... ....+.++.+.+..+ .+|..+|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~---~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~----~I~~~aF~~~ 92 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNA---EDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN----FVPAYAFSNV 92 (329)
T ss_dssp HHHHCSEEEEEEE-ECH---HHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT----EECTTTTEEE
T ss_pred hhCceeEEEEecc-ccH---HHHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc----ccCHHHhccc
Confidence 3567888888864 221 11344444 68899999999887721111 011122444555544 455667888
Q ss_pred -------CCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCC----CC
Q 042944 164 -------MTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL----TG 231 (637)
Q Consensus 164 -------l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~----~~ 231 (637)
+++|++|++.+ .++.++ .+|.+|++|+.+++.+|.+....+.+|..+. ++..+....... ..
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~-----~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSV-----TAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTT-----CEEEECTTCTHHHHTSTT
T ss_pred ccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCC-----ceEEecCcchhhhhcccc
Confidence 89999999988 888875 4688899999999998888767777777655 666666554211 10
Q ss_pred -CcCCcccCCCcc-EEEccCCcC-CCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcCCCCChhhh
Q 042944 232 -SLPDITEFSSLQ-ELHLFDNKL-DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRLNGTVSEGL 307 (637)
Q Consensus 232 -~~~~~~~~~~L~-~L~l~~n~i-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l 307 (637)
....+..+..|+ .+.+..... .......-....++..+.+.++-.......+.. +++|+.+++++|.++.....+|
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 011233333444 232222110 000000000112233333322211000000111 3445555555554444444445
Q ss_pred cCCCCCCEEecCCCcCCCccchhhhcCCCCCc-EEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCc
Q 042944 308 GRLSKLEFLDLFGNSLEGMITESHVSNLSKLK-YMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNY 386 (637)
Q Consensus 308 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 386 (637)
.++++|+.+++.+| +.. ++...|.++++|+ .+++.. .++.....+|..+.+|+.+++.++.+....+..|.++++|
T Consensus 247 ~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred hCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 55555555555544 322 3333455555555 555544 4443444444444444444444444443333344444444
Q ss_pred cEE
Q 042944 387 YFL 389 (637)
Q Consensus 387 ~~L 389 (637)
+.+
T Consensus 324 ~~l 326 (329)
T 3sb4_A 324 KLI 326 (329)
T ss_dssp CEE
T ss_pred hhh
Confidence 443
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=2e-17 Score=176.64 Aligned_cols=195 Identities=19% Similarity=0.159 Sum_probs=109.4
Q ss_pred CCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCC-------------CCCCCCchhccCCCCCCEEE-cCCCcc
Q 042944 112 NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQ-------------LAGPIPDYAFSNMTALQHLN-LSLNQI 177 (637)
Q Consensus 112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~l~~~~~~~l~~L~~L~-L~~n~l 177 (637)
..+++|+.|+|++|.++ ..|..+..+ ++|+.|++++|. ..+.+|. .+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhccc
Confidence 34455555555555554 344445444 555555554432 2222222 455555566655 444433
Q ss_pred cchhh------hcCC--CCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccC
Q 042944 178 SAISK------SFGN--MCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD 249 (637)
Q Consensus 178 ~~l~~------~~~~--l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 249 (637)
..++. .+.. ...|++|++++|.+++ +|. +..++ +|+.|++++|.++..+..+..+++|+.|++++
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~-----~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL-----LVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT-----TCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc-----cCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 33221 0110 1246677777776664 344 66666 77777777777765555666677777777777
Q ss_pred CcCCCCCCCcCCCCCCCcEEEcCCCCCCCC--CCCCCCCCCCCEEEccCCcCCCCChh---hhcCCCCCCEEec
Q 042944 250 NKLDGSFPEKFRKPSPLVILNLDGNQLWGS--LPDLSVFPFLTRLDVSDSRLNGTVSE---GLGRLSKLEFLDL 318 (637)
Q Consensus 250 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l 318 (637)
|.+++ .| .+..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+++..+. .+..+|+|+.|++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77764 33 566677777777777777665 33445577777777777776654321 2334677777653
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=4.3e-15 Score=148.56 Aligned_cols=215 Identities=13% Similarity=0.053 Sum_probs=128.7
Q ss_pred CCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC-------cCCCCCCCCC
Q 042944 383 QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF-------EGPVPPVPGN 455 (637)
Q Consensus 383 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~-------~~~~~~~~~~ 455 (637)
+++|+.|++.+ .+.......|.. +++|+++++.+|.+....+..|..+..+..+....... ..........
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~-~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKG-CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTT-CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhc-CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 55555555555 444433333333 25566666666555555555555554444444333211 0000111223
Q ss_pred cc-EEEcccccccCccccccc---ccCCCccEEeCCCCCCcccCchhh-hccCCCcEEeccCccCCCCccccccccCCc-
Q 042944 456 VT-SLNLSNNKFSGPISSLCS---ISGEYFSYLDVSDNLLSGELPDCL-LRWQALAVLNLANNNFSGNFLTFFVGEIPP- 529 (637)
Q Consensus 456 L~-~L~L~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~- 529 (637)
|+ .+.+..... .+...+ ....+++.+.+.++-.. .....+ ..+++|+.|++++|+++ .+|.
T Consensus 178 L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~---------~I~~~ 244 (329)
T 3sb4_A 178 LETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT---------TIPDF 244 (329)
T ss_dssp CEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC---------EECTT
T ss_pred cceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc---------eecHh
Confidence 33 232322111 111000 01145556665544222 222222 23789999999998887 5555
Q ss_pred cccCCCCCcEEEcCCCcccccCChhhhhcCCCCc-EEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccc
Q 042944 530 SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLA-ILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608 (637)
Q Consensus 530 ~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 608 (637)
.+.+|++|+.+++.+| ++ .++...|.++++|+ .+++.+ .++..-+..|..+++|+.+++++|.++..-+..|..++
T Consensus 245 aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred hhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 4788899999999988 66 78887777899998 999988 66655668889999999999999999877777899999
Q ss_pred cceeecc
Q 042944 609 AMVEKAS 615 (637)
Q Consensus 609 ~L~~l~l 615 (637)
+|+.++.
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 9988763
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.4e-13 Score=140.39 Aligned_cols=262 Identities=13% Similarity=0.128 Sum_probs=127.3
Q ss_pred CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS 218 (637)
Q Consensus 140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~ 218 (637)
..++.+.+.. .++ .|+..+|.++ +|+.+.+..+ ++.++ .+|.++ +|+.+.+.+ .+......+|..+. +
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-----~ 181 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-----N 181 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT-----T
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc-----c
Confidence 4444444443 233 4444445443 4555555443 44432 234342 455555543 33333444454444 5
Q ss_pred ccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCc
Q 042944 219 LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSR 298 (637)
Q Consensus 219 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 298 (637)
|+.++++.|.+...........+|+.+.+..+ +......+|.++++|+.+++..+ +..+....+...+|+.+.+. +.
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~ 258 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NG 258 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TT
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CC
Confidence 55555555554443333333455555555533 44445556666666666666553 33333333333556666663 33
Q ss_pred CCCCChhhhcCCCCCCEEecCCCcCC----CccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCC
Q 042944 299 LNGTVSEGLGRLSKLEFLDLFGNSLE----GMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGP 374 (637)
Q Consensus 299 ~~~~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 374 (637)
++.....+|.+|++|+.+.+.++.+. ..++...|.+|++|+.+++. +.+......+|..+.+|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44444555666666666666665443 11334456666666666666 3355455555555555555555332 332
Q ss_pred CccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCC
Q 042944 375 HFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH 418 (637)
Q Consensus 375 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~ 418 (637)
.....|.++ +|+.+++.+|.........+.+...+++.+.+..
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 333445555 5555555555444333333333323344444433
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=8.3e-15 Score=130.96 Aligned_cols=131 Identities=23% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCcEEECCCCCCC-CCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944 140 SNLLALDLNSNQLA-GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS 218 (637)
Q Consensus 140 ~~L~~L~L~~n~l~-~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~ 218 (637)
++|++|++++|.+. +.+|. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..+..++ +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----N 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----T
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----C
Confidence 44555555555543 34444 344555555555555555555 4455555555555555555544445554455 5
Q ss_pred ccEEEcCCCCCCCCc--CCcccCCCccEEEccCCcCCCCCC---CcCCCCCCCcEEEcCCCCCC
Q 042944 219 LEILKLGGNKLTGSL--PDITEFSSLQELHLFDNKLDGSFP---EKFRKPSPLVILNLDGNQLW 277 (637)
Q Consensus 219 L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~~~~~ 277 (637)
|++|++++|.+.... ..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555555555432 344555555555555555554333 24555555555555555544
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2.2e-14 Score=131.07 Aligned_cols=172 Identities=18% Similarity=0.161 Sum_probs=123.4
Q ss_pred CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+.++++++.++.+....+.++++|++++|++++..+...+...++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 78999999987666556779999999999998776653334448999999999999988889999999999999999998
Q ss_pred CCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCc
Q 042944 516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNS 595 (637)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~ 595 (637)
++ ..+..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|++....+.. .-...++...+..+.
T Consensus 91 ~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~ 160 (192)
T 1w8a_A 91 KE--------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGA 160 (192)
T ss_dssp CE--------ECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGG
T ss_pred Cc--------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCC
Confidence 83 2344577889999999999999866666665 6899999999999988543311 001123333444444
Q ss_pred ccccccccccccccceeeccCCCee
Q 042944 596 ISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 596 l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
.....|..+. .....++..+.+
T Consensus 161 ~~C~~P~~l~---~~~l~~l~~~~~ 182 (192)
T 1w8a_A 161 ARCGAPSKVR---DVQIKDLPHSEF 182 (192)
T ss_dssp CBBCSSTTTT---TSBGGGSCTTTC
T ss_pred CCCCCChHHc---CCChhhCcHhhc
Confidence 4444454443 333334444443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.1e-15 Score=168.63 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=94.3
Q ss_pred ccccccCCCCCCeEeCCCCcCcCCCCCC--CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc
Q 042944 425 VLDLSLNYAGYPGIDLSSNDFEGPVPPV--PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW 502 (637)
Q Consensus 425 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 502 (637)
.+..+..++.|+.|++++|.+..+.+.. +++|++|+|++|.++.....+. .+++|++|+|++|.++ .+|..|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK--NLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG--GGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhh--CCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444555666666666666655332221 4566677777776663322222 2278888888888888 668888888
Q ss_pred CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccC
Q 042944 503 QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR 582 (637)
Q Consensus 503 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~ 582 (637)
++|+.|+|++|.|+ .+|..+..+++|++|++++|.+++.+|..+......+..++|++|.+++.+|.
T Consensus 293 ~~L~~L~L~~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---- 359 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT---------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---- 359 (727)
T ss_dssp TTCSEEECCSSCCC---------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----
T ss_pred CCCCEEECCCCCCC---------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc----
Confidence 88888888888887 67777888888888888888888666666553112233467888888766664
Q ss_pred CCCCcEeeCCCC--------cccccccccccccccceeeccCCCee
Q 042944 583 LSKIQLLDFSLN--------SISGAIPKCINNLTAMVEKASSNSTI 620 (637)
Q Consensus 583 l~~L~~L~ls~n--------~l~~~~p~~l~~l~~L~~l~l~~n~l 620 (637)
.|+.|++++| .+.+..+..+.++..+....++.|.+
T Consensus 360 --~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 360 --ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp --C-----------------------------------------CC
T ss_pred --ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 4456667666 33333344445555566666666654
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=6.1e-16 Score=170.61 Aligned_cols=187 Identities=21% Similarity=0.189 Sum_probs=91.9
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCc---------hhhhHHHhhcCCCcEEECCCCCCCCCCCc
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSN---------SAYHWLFKISSNLLALDLNSNQLAGPIPD 158 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~---------~~~~~~~~~~~~L~~L~L~~n~l~~~l~~ 158 (637)
++++.|+|.++.+.... ..+ |+.++|+.+.+.. ..+..+..+ ++|++|+|++|.+. .++.
T Consensus 173 ~~~~~l~L~~n~~~~~~----~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l-~~L~~L~Ls~n~l~-~l~~ 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN----QAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDD-QLWHALDLSNLQIF-NISA 241 (727)
T ss_dssp ----------------------------------------------------------CC-CCCCEEECTTSCCS-CCCG
T ss_pred CccceEEeeCCCCCcch----hhH-----hhcCccCcccccCccccccceecChhhhccC-CCCcEEECCCCCCC-CCCh
Confidence 55777777777666542 212 2333333333221 223334444 77777777777776 6766
Q ss_pred hhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCccc
Q 042944 159 YAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITE 238 (637)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~ 238 (637)
.+.++++|++|+|++|.++.+|..|.++++|++|++++|.++ .+|..+..+. +|++|++++|.+...+..+..
T Consensus 242 -~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~lp~~~~~ 314 (727)
T 4b8c_D 242 -NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF-----QLKYFYFFDNMVTTLPWEFGN 314 (727)
T ss_dssp -GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT-----TCSEEECCSSCCCCCCSSTTS
T ss_pred -hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC-----CCCEEECCCCCCCccChhhhc
Confidence 344677777777777777777777777777777777777777 5576777776 777777777777766556777
Q ss_pred CCCccEEEccCCcCCCCCCCcCCCCC-CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCC
Q 042944 239 FSSLQELHLFDNKLDGSFPEKFRKPS-PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDS 297 (637)
Q Consensus 239 ~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n 297 (637)
+++|++|+|++|.+++..+..+..+. .+..+++++|.+....+ ..|+.|+++.|
T Consensus 315 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n 369 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD 369 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence 77777777777777665555443321 11235566666643332 34556666555
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.2e-14 Score=130.81 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=85.5
Q ss_pred CCccEEeCCCCCCcccCchhhhcc-CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944 479 EYFSYLDVSDNLLSGELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 557 (637)
++|+.|++++|.++. ++. +..+ ++|+.|++++|.++ .+ ..+..+++|++|++++|.++ .+|..++.
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~---------~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~ 85 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR---------KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQ 85 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC---------EE-CCCCCCSSCCEEECCSSCCC-EECSCHHH
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC---------cc-cccccCCCCCEEECCCCccc-ccCcchhh
Confidence 566777777776663 333 3333 37777777777776 23 34666777777777777776 55555544
Q ss_pred cCCCCcEEeccCccccccCCc--cccCCCCCcEeeCCCCccccccccc----ccccccceeeccCCCeeE
Q 042944 558 TLPKLAILSLRSNQFHGSIPR--NLCRLSKIQLLDFSLNSISGAIPKC----INNLTAMVEKASSNSTIT 621 (637)
Q Consensus 558 ~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~l~l~~n~l~ 621 (637)
.+++|+.|++++|++. .+|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|.+.
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5777777777777775 4554 6677777777777777776 44553 777777777777777653
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=3.1e-13 Score=137.93 Aligned_cols=270 Identities=15% Similarity=0.132 Sum_probs=147.0
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT 165 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~ 165 (637)
.+..++.+.+.. .++.+.. .+|.++ +|+.+.+..+ ++.....+|.. .+|+.+.+.. .+. .++..+|.+++
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~---~aF~~~-~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~-~I~~~aF~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPK---DAFRNS-QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLE-QLKEDIFYYCY 180 (401)
T ss_dssp ECSSCSEEECCT-TCCEECT---TTTTTC-CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCC-EECSSTTTTCT
T ss_pred ecCCccEEEECC-ccCEehH---hhcccC-CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-Ccc-EehHHHhhCcc
Confidence 345566666654 2444443 223333 5666666555 44444443433 3566666664 454 56655666666
Q ss_pred CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944 166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL 245 (637)
Q Consensus 166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 245 (637)
+|+.+++++|+++.++...-.+.+|+.+.+..+ +......+|..+. +|+.+.+..+ +...........+|+.+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~-----~L~~l~l~~~-l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTS-----QLKTIEIPEN-VSTIGQEAFRESGITTV 253 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCT-----TCCCEECCTT-CCEECTTTTTTCCCSEE
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCC-----CCCEEecCCC-ccCccccccccCCccEE
Confidence 666666666666666543223566666666543 4444555666555 6666666553 22222222222455555
Q ss_pred EccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944 246 HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325 (637)
Q Consensus 246 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 325 (637)
.+. +.++.....+|.++++|+.+.+.++.+. .+........+|.+|++|+.+.+.. .+..
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence 552 2233344445555555555555444332 0001123445566677777777763 3433
Q ss_pred ccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCC-CccEEEeeCCC
Q 042944 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYFLDISDTE 395 (637)
Q Consensus 326 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~ 395 (637)
+....|.+|++|+.+++..+ +......+|..+ +|+.+.+.++.........+..++ ++..|++..+.
T Consensus 314 -I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 314 -LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 44446777777777777543 555556666666 777777777766555555666663 67777776654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.8e-14 Score=125.85 Aligned_cols=126 Identities=23% Similarity=0.317 Sum_probs=70.9
Q ss_pred CCCcEEECCCCCCC-CCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944 140 SNLLALDLNSNQLA-GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS 218 (637)
Q Consensus 140 ~~L~~L~L~~n~l~-~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~ 218 (637)
++|++|++++|.+. +.+|. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..+..++ +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----N 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----T
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----C
Confidence 45566666666554 34544 455566666666666666555 4555666666666666666544555555555 6
Q ss_pred ccEEEcCCCCCCCCc--CCcccCCCccEEEccCCcCCCCCC---CcCCCCCCCcEEEcC
Q 042944 219 LEILKLGGNKLTGSL--PDITEFSSLQELHLFDNKLDGSFP---EKFRKPSPLVILNLD 272 (637)
Q Consensus 219 L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~ 272 (637)
|++|++++|.+.... ..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666666655422 345555566666666666554433 345555555555543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=125.66 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=71.2
Q ss_pred CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+.++++++.++.+....++++++|++++|+++.... .+...++|+.|++++|.+++..+..|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 455666666554444445566666666666653331 122225666666666666655555666666666666666666
Q ss_pred CCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944 516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573 (637)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~ 573 (637)
+. ..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|++.
T Consensus 91 ~~--------i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RC--------IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CB--------CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CE--------eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 52 11234555666666666666665 455444445666666666666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=9.5e-14 Score=125.19 Aligned_cols=132 Identities=20% Similarity=0.273 Sum_probs=100.0
Q ss_pred ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCC
Q 042944 456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKC 534 (637)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l 534 (637)
.+.+++++++++....... ++++.|++++|.+++..+..+..+++|++|++++|.++ .++. .+..+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l 75 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ---------SLPDGVFDKL 75 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTTC
T ss_pred CCEEEecCCCCccCCCCCC----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---------EeChhHccCC
Confidence 5678888888775543222 78888899888888666667788888889998888887 3443 35778
Q ss_pred CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 601 (637)
++|++|++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 76 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 76 TKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88888888888887 5555554468888888888888885555556778888888888888876544
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=3.4e-13 Score=138.36 Aligned_cols=311 Identities=14% Similarity=0.072 Sum_probs=130.1
Q ss_pred chhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchh
Q 042944 81 IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYA 160 (637)
Q Consensus 81 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~ 160 (637)
-.+|..+++|+.+.|..+ ++.+.. .+|.+|++|+.+++..+ ++.....++..+ .+|+.+.+..+ +. .++..+
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~~-l~-~i~~~a 135 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGE---FAFENCSKLEIINIPDS-VKMIGRCTFSGC-YALKSILLPLM-LK-SIGVEA 135 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECT---TTTTTCTTCCEECCCTT-CCEECTTTTTTC-TTCCCCCCCTT-CC-EECTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCcch---hHhhCCCCCcEEEeCCC-ceEccchhhccc-ccchhhcccCc-ee-eeccee
Confidence 345556666666666532 444433 34445566666666543 333333333333 55555554432 32 344444
Q ss_pred ccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccC
Q 042944 161 FSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF 239 (637)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 239 (637)
|.++..++...... +..+ ..+|.++++|+.+.+.++. ......+|..+. +|+.+.+..+
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~-----~L~~i~l~~~------------ 195 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCG-----KLKSIKLPRN------------ 195 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCBCCCCTT------------
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCC-----CceEEEcCCC------------
Confidence 54443322222111 1111 2345555555555554432 213334444444 4554444433
Q ss_pred CCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecC
Q 042944 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319 (637)
Q Consensus 240 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 319 (637)
++.....+|.++..|+.+.+..+... ..........|+.+.+.... +.....++..+..++.+.+.
T Consensus 196 ------------~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 196 ------------LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp ------------CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEEC
T ss_pred ------------ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc-eecccccccccccceeEEcC
Confidence 22222333444444444443333221 11222223344444443221 11222334444444444444
Q ss_pred CCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc
Q 042944 320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA 399 (637)
Q Consensus 320 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 399 (637)
.+... +....+.++..++.+......+ ....+..+.+|+.+.+.++ +.......|.+|.+|+.+++.++ +...
T Consensus 262 ~~~~~--i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I 334 (394)
T 4fs7_A 262 NNKLR--IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI 334 (394)
T ss_dssp CTTCE--ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred CCcce--eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence 33221 2222344444444444433322 1223344444444444332 22222334455555555555432 3333
Q ss_pred cchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCC
Q 042944 400 VPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSS 442 (637)
Q Consensus 400 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 442 (637)
....|.. +.+|+.+++..+ ++.....+|.+|.+|+.+++..
T Consensus 335 ~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 335 GKRSFRG-CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTTTT-CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hHHhccC-CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 3333333 255555555444 4444455555666666665543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=3.1e-13 Score=138.61 Aligned_cols=307 Identities=12% Similarity=0.017 Sum_probs=190.6
Q ss_pred cccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCC
Q 042944 109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNM 187 (637)
Q Consensus 109 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l 187 (637)
.+|.+|.+|+++.+..+ ++.....+|..+ ++|+.+++..+ ++ .++..+|.++.+|+.+.+..+ +..+ ..+|.++
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c-~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENC-SKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTC-TTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCC-CCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 34555566666666533 444444444444 66666666543 44 555555666666665554432 2222 2233333
Q ss_pred CCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc
Q 042944 188 CGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV 267 (637)
Q Consensus 188 ~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 267 (637)
..++........ ... ...+..+++|+.+.+.++. ......+|.++.+|+
T Consensus 140 ~~~~~~~~~~~~--~i~----------------------------~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 140 DFKEITIPEGVT--VIG----------------------------DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLK 188 (394)
T ss_dssp CCSEEECCTTCC--EEC----------------------------TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred cccccccCcccc--ccc----------------------------hhhhcccCCCcEEecCCcc-ceeccccccCCCCce
Confidence 322222111110 011 2235556667777765543 235567788899999
Q ss_pred EEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCC
Q 042944 268 ILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346 (637)
Q Consensus 268 ~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 346 (637)
.+.+..+ +...... +..+..|+.+.+..+... . ........+|+.+.+.... . .+....+.++..++.+.+..+
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCT
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCC
Confidence 9998776 3333333 444888888887766433 1 2233455789999886543 2 244457889999999999876
Q ss_pred cccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccc
Q 042944 347 SLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVL 426 (637)
Q Consensus 347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 426 (637)
.. ......+..+..++.+......+. ...+..+.+|+.+.+.++ +.......+.. +++|+.++|.++ ++....
T Consensus 264 ~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 264 KL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFES-CTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp TC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTT-CTTCCEECCCTT-CCEECT
T ss_pred cc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcC-CCCCCEEEeCCc-ccEEhH
Confidence 43 356667888888888887765432 245788999999999765 55444445544 489999999754 776778
Q ss_pred ccccCCCCCCeEeCCCCcCcCC---CCCCCCCccEEEcccc
Q 042944 427 DLSLNYAGYPGIDLSSNDFEGP---VPPVPGNVTSLNLSNN 464 (637)
Q Consensus 427 ~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~L~~n 464 (637)
.+|.+|.+|+.+++..+ +..+ ....+.+|+++++..+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88999999999999876 4433 3334678999998754
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.4e-13 Score=124.01 Aligned_cols=128 Identities=21% Similarity=0.291 Sum_probs=72.7
Q ss_pred CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515 (637)
Q Consensus 436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 515 (637)
+.++++++.+.......++++++|++++|++.+..+... ...++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 456666666655444445566666666666654433322 1225666666666666654445556666666666666666
Q ss_pred CCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccc
Q 042944 516 SGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG 574 (637)
Q Consensus 516 ~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~ 574 (637)
+ .+|. .+..+++|++|++++|.++ .+|...+..+++|+.|++++|++..
T Consensus 89 ~---------~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 Q---------SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp C---------CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred c---------ccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 5 2222 3455666666666666665 4554444456666666666666553
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=5.7e-14 Score=126.46 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=80.5
Q ss_pred hcCCCCCcEEEcCCCCCCCCCcccccccCCC-CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhcc
Q 042944 84 ITSLASLRDLYLASSTLLSINRPSLSSMNSS-TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS 162 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~ 162 (637)
+..+++|++|++++|.+..+ +.+..+ ++|++|++++|.+++. ..+..+ ++|++|++++|.++ .++...+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-----~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-~~L~~L~Ls~N~l~-~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRIC-RIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-----CCGGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCC-EECSCHHH
T ss_pred cCCcCCceEEEeeCCCCchh-----HHhhhcCCCCCEEECCCCCCCcc--cccccC-CCCCEEECCCCccc-ccCcchhh
Confidence 44566777777777776654 123222 3677777777776654 234444 66777777777776 55554456
Q ss_pred CCCCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCchh----HhhhcccCCCCcccEEEcCCCCC
Q 042944 163 NMTALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQLPE----LFLNLSGCSKNSLEILKLGGNKL 229 (637)
Q Consensus 163 ~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~~~----~l~~l~~~~~~~L~~L~l~~n~~ 229 (637)
.+++|++|++++|+++.+|. .+..+++|++|++++|.+. ..|. .+..++ +|+.|++++|..
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~-----~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP-----QVRVLDFQKVKL 152 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT-----TCSEETTEECCH
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC-----ccceeCCCcCCH
Confidence 67777777777777766665 5666677777777777665 2333 355555 666666665544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.2e-15 Score=138.64 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944 479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~ 558 (637)
++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+| .+. .
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~---------~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~-~ 113 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK---------KIENLDAVADTLEELWISYNQIA-SLS-GIE-K 113 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC---------SCSSHHHHHHHCSEEEEEEEECC-CHH-HHH-H
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc---------cccchhhcCCcCCEEECcCCcCC-cCC-ccc-c
Confidence 788888888888875 55 7888888999999988887 56666777788899999999887 455 444 5
Q ss_pred CCCCcEEeccCccccccCC-ccccCCCCCcEeeCCCCccccccccc----------ccccccceeeccCCCeeE
Q 042944 559 LPKLAILSLRSNQFHGSIP-RNLCRLSKIQLLDFSLNSISGAIPKC----------INNLTAMVEKASSNSTIT 621 (637)
Q Consensus 559 l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~----------l~~l~~L~~l~l~~n~l~ 621 (637)
+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|+ +|.++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8889999999998873221 36788888999999999888766543 78888888876 66553
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.3e-12 Score=116.46 Aligned_cols=108 Identities=23% Similarity=0.266 Sum_probs=89.0
Q ss_pred CccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcC
Q 042944 480 YFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTL 559 (637)
Q Consensus 480 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l 559 (637)
..+.+++++|.++ .+|..+ .++|+.|++++|.|++ ..|..+..+++|++|++++|+++ .++...+..+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l 77 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITK--------LEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCc--------cChhhhcCcccCCEEECCCCCcC-ccChhhccCC
Confidence 4578999999998 466555 3889999999999883 23556888999999999999998 7777766679
Q ss_pred CCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 560 PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 560 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
++|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999999865566788999999999999998754
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=2.8e-12 Score=114.69 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=88.4
Q ss_pred ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944 481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560 (637)
Q Consensus 481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~ 560 (637)
-+.++++++.++ .+|..+. ++|+.|++++|.|++ ..|..+..+++|++|++++|+++ .+|...+..++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITK--------LEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT 81 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccc--------cCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcc
Confidence 378999999997 5666554 889999999999883 23566888999999999999998 67777666799
Q ss_pred CCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA 599 (637)
Q Consensus 561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~ 599 (637)
+|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999999999955555588999999999999999843
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=6.2e-13 Score=134.35 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=117.8
Q ss_pred CCCCCcEEEcCCCCCCCCCcccccc-cC-CCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhc--
Q 042944 86 SLASLRDLYLASSTLLSINRPSLSS-MN-SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF-- 161 (637)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~-- 161 (637)
..++|++|++++|.++......+.. +. ..++|++|+|++|.+++.....+...+++|++|+|++|.++ ......+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHH
Confidence 3578999999999988754322222 22 23799999999999988777777776689999999999987 4333233
Q ss_pred ---cCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCc----hhHhhhcccCCCCcccEEEcCCCCC
Q 042944 162 ---SNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQL----PELFLNLSGCSKNSLEILKLGGNKL 229 (637)
Q Consensus 162 ---~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~~~~~~L~~L~l~~n~~ 229 (637)
...++|++|+|++|.+++ ++..+..+++|++|++++|.+.+.. +..+...+ +|++|++++|.+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-----~L~~L~Ls~N~i 223 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-----QLQELNVAYNGA 223 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-----CCCEEECCSSCC
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-----CcCeEECCCCCC
Confidence 357899999999999876 5566788999999999999987543 33344444 788888888777
Q ss_pred CCCc-----CCcccCCCccEEEccCCcCCCC
Q 042944 230 TGSL-----PDITEFSSLQELHLFDNKLDGS 255 (637)
Q Consensus 230 ~~~~-----~~~~~~~~L~~L~l~~n~i~~~ 255 (637)
+... ..+...+.|++|++++|.+++.
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6321 1233455666777766666543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=2.4e-14 Score=131.66 Aligned_cols=130 Identities=20% Similarity=0.216 Sum_probs=106.2
Q ss_pred CccEEeCCCCCCccc------CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCCh
Q 042944 480 YFSYLDVSDNLLSGE------LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA 553 (637)
Q Consensus 480 ~L~~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~ 553 (637)
.++.++++++.+.+. +|..+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|.
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---------~l~-~~~~l~~L~~L~l~~n~l~-~l~~ 87 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---------KIS-SLSGMENLRILSLGRNLIK-KIEN 87 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---------CCC-CHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---------ccc-ccccCCCCCEEECCCCCcc-cccc
Confidence 344444444444433 3448999999999999999998 566 7889999999999999998 8887
Q ss_pred hhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc-ccccccccceeeccCCCeeEEE
Q 042944 554 WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP-KCINNLTAMVEKASSNSTITHI 623 (637)
Q Consensus 554 ~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~l~~n~l~~~ 623 (637)
.+. .+++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++..
T Consensus 88 ~~~-~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 88 LDA-VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHH-HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hhh-cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 665 58999999999999984 55 68899999999999999985332 4789999999999999988543
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=5.8e-11 Score=121.67 Aligned_cols=319 Identities=12% Similarity=0.111 Sum_probs=200.9
Q ss_pred cccchhhcCCC-CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC---CCchhhhHHHhhcCCCcEEECCCCCCC
Q 042944 78 NTCIVTITSLA-SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG---LSNSAYHWLFKISSNLLALDLNSNQLA 153 (637)
Q Consensus 78 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~~~~~L~~L~L~~n~l~ 153 (637)
..+-.+|..++ .|+.+.+... ++.+.. .+|.+|++|+.+.+..+. ++.....+|..+ .+|+.+.+..+ ++
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~---~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGS---NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VT 126 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECT---TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CS
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhH---HHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cc
Confidence 33445677774 5999999754 666654 567778999999987663 555555555555 88888887754 55
Q ss_pred CCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC
Q 042944 154 GPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS 232 (637)
Q Consensus 154 ~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~ 232 (637)
.++..+|..+.+|+.+.+..+ +..+ ..+|.++.+|+.+.+.++ +......+|.. . +|+.+.+..+.....
T Consensus 127 -~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~-----~l~~i~ip~~~~~i~ 197 (394)
T 4gt6_A 127 -EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-T-----ALTQIHIPAKVTRIG 197 (394)
T ss_dssp -EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-C-----CCSEEEECTTCCEEC
T ss_pred -eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-c-----ceeEEEECCcccccc
Confidence 777778899999999999754 4444 357888999999998765 44355556643 3 788888876544333
Q ss_pred cCCcccCCCccEEEccCCcCCCCCCCc-------------CCCCCCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCc
Q 042944 233 LPDITEFSSLQELHLFDNKLDGSFPEK-------------FRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSR 298 (637)
Q Consensus 233 ~~~~~~~~~L~~L~l~~n~i~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~ 298 (637)
...+..+..+................. +.....+..+.+... +..... .+..+..|+.+.+..+.
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC
T ss_pred cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccccc
Confidence 344566667776665544332111111 111223333433322 111222 24447888888886654
Q ss_pred CCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccc
Q 042944 299 LNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPK 378 (637)
Q Consensus 299 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 378 (637)
.. ....+|.++++|+.+.+.. .+.. ++...|.+|.+|+.+++..+ ++.....+|..+.+|+.+.+..+ +......
T Consensus 277 ~~-I~~~aF~~c~~L~~i~l~~-~i~~-I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 277 VS-IGTGAFMNCPALQDIEFSS-RITE-LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CE-ECTTTTTTCTTCCEEECCT-TCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred ce-ecCcccccccccccccCCC-cccc-cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 33 5556788888999988864 3433 55567888999999998754 66667778888899999988654 5555567
Q ss_pred cccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcC
Q 042944 379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHL 421 (637)
Q Consensus 379 ~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i 421 (637)
.|.+|++|+.+++.++... ...+. ...+|+.+.+..+.+
T Consensus 352 aF~~C~~L~~i~~~~~~~~---~~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQ---WNAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHHH---HHTCB-CCCCC----------
T ss_pred HhhCCCCCCEEEECCceee---hhhhh-ccCCCCEEEeCCCCE
Confidence 7889999999999876432 11222 236788887766543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.2e-13 Score=139.66 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=83.7
Q ss_pred CCCccEEECCCCcCCCcccccccC-----CCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCcc
Q 042944 408 SPNLYYLNLSHNHLEGTVLDLSLN-----YAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS 482 (637)
Q Consensus 408 ~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 482 (637)
.+.|++|++++|.++......+.. .+.|+.|++++|.+. +..........++|+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---------------------~~~~~~l~~~L~~L~ 129 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---------------------PAGLRTLLPVFLRAR 129 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---------------------HHHHHHTHHHHHTEE
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---------------------HHHHHHHHHHHHhcc
Confidence 368888888888887544333221 245555555555443 221111111113455
Q ss_pred EEeCCCCCCcccCchhhh-----ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccC----Ch
Q 042944 483 YLDVSDNLLSGELPDCLL-----RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI----PA 553 (637)
Q Consensus 483 ~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~----~~ 553 (637)
.|++++|.+++.....+. ..++|++|++++|.+++.... .++..+..+++|++|++++|.+++.. ..
T Consensus 130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~----~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA----VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH----HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH----HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 555555555543333221 235566666666655422111 22233445555666666666654221 22
Q ss_pred hhhhcCCCCcEEeccCcccccc----CCccccCCCCCcEeeCCCCcccccccccc
Q 042944 554 WIGDTLPKLAILSLRSNQFHGS----IPRNLCRLSKIQLLDFSLNSISGAIPKCI 604 (637)
Q Consensus 554 ~l~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~l 604 (637)
.+. ..++|++|+|++|.+++. +...+...++|++|||++|++++.....+
T Consensus 206 ~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 206 QLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 222 345666666666665532 22333445566666666666654443333
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=7.3e-12 Score=111.63 Aligned_cols=105 Identities=23% Similarity=0.309 Sum_probs=85.3
Q ss_pred CccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccC
Q 042944 455 NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKK 533 (637)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~ 533 (637)
..+++++++|+++.....+. +++++|++++|.+++..+..|..+++|+.|++++|+|+ .+|. .+..
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~f~~ 76 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT---------VLPAGVFDK 76 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTT
T ss_pred CCCEEEeCCCCcCccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC---------ccChhhccC
Confidence 35788999998886554332 78899999999999877888999999999999999988 4444 3578
Q ss_pred CCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944 534 CNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573 (637)
Q Consensus 534 l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~ 573 (637)
+++|++|++++|.++ .++...+..+++|+.|+|++|++.
T Consensus 77 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 899999999999998 666665557899999999999887
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=7.3e-12 Score=112.00 Aligned_cols=108 Identities=22% Similarity=0.264 Sum_probs=88.2
Q ss_pred ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc-ccCC
Q 042944 456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKC 534 (637)
Q Consensus 456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l 534 (637)
-+.+++++|+++..+..+. ++|++|++++|.+++..+..|..+++|+.|++++|+|+ .+|.. +..+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~i~~~~~~~l 80 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT---------AIPTGVFDKL 80 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTC
T ss_pred CcEEEeCCCCCCccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---------ccChhHhCCc
Confidence 3688999999876554332 78999999999999888888999999999999999988 55554 5788
Q ss_pred CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCc
Q 042944 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPR 578 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~ 578 (637)
++|++|++++|.++ .+|...+..+++|+.|+|++|++. ..+.
T Consensus 81 ~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 81 TQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred chhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 99999999999998 677665557999999999999987 4443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=1.1e-10 Score=119.71 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=158.5
Q ss_pred cccCCCC-CccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCC---CCCCCCchhccCCCCCCEEEcCCCcccch-hhh
Q 042944 109 SSMNSST-SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQ---LAGPIPDYAFSNMTALQHLNLSLNQISAI-SKS 183 (637)
Q Consensus 109 ~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~---l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~ 183 (637)
.+|.++. .|+++.+..+ ++.....+|..+ .+|+.+.+..+. ++ .++..+|.++.+|+.+.+..+ ++.+ ..+
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNC-TSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTC-TTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCC-ccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhh
Confidence 4455664 5999999765 666666667776 999999998753 66 788889999999999888654 5555 357
Q ss_pred cCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCC
Q 042944 184 FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKP 263 (637)
Q Consensus 184 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l 263 (637)
|.++.+|+.+.+..+. ......+|..+. +|+.+.+..+ +............|+.+.+..+-. .....+|..+
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~-----~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCY-----SLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhccccccccccee-eeecccceeccc-----ccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhc
Confidence 8899999999997653 335667777777 8999998765 332333333456788888876543 2556778888
Q ss_pred CCCcEEEcCCCCCCCCCCCCCC--------------CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 042944 264 SPLVILNLDGNQLWGSLPDLSV--------------FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329 (637)
Q Consensus 264 ~~L~~L~l~~~~~~~~~~~~~~--------------~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 329 (637)
..+................+.. ...+..+.+... +......+|.++..|+.+.+..+... +..
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~ 281 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS--IGT 281 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE--ECT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce--ecC
Confidence 8888887765544322111111 112223332211 11123344555666666665443221 333
Q ss_pred hhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEee
Q 042944 330 SHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDIS 392 (637)
Q Consensus 330 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 392 (637)
..|.++++|+.+.+. +.+......+|..+.+|+.+.+..+ ++......|.+|.+|+.+.+.
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 455566666666654 2333344444555555555555432 222222344444444444443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.4e-10 Score=116.86 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=78.5
Q ss_pred cEEeCCCC-CCcccCchhhhccCCCcEEeccC-ccCCCCccccccccCC-ccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944 482 SYLDVSDN-LLSGELPDCLLRWQALAVLNLAN-NNFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558 (637)
Q Consensus 482 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~ 558 (637)
..++.+++ .++ .+|. +..+++|+.|+|++ |.|. .++ ..+..+++|++|++++|.+++ ++...+..
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~---------~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~ 78 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ---------HLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHF 78 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC---------EECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGS
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC---------CcChhHhccccCCCEEECCCCccce-eCHHHhcC
Confidence 35678887 787 5777 88888899999986 8887 444 457888899999999999884 44444447
Q ss_pred CCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598 (637)
Q Consensus 559 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 598 (637)
+++|+.|+|++|++++..+..+..++ |+.|++++|++..
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 89999999999998854444455454 8999999988874
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.02 E-value=2e-08 Score=102.27 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=71.9
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhc
Q 042944 82 VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF 161 (637)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~ 161 (637)
.|+....+|+.+.+.. .++.+.. .+|.+|.+|+++++..+ ++.....+|.. .+|+.+.+..+ +. .++..+|
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~---~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~--c~l~~i~~~~~-l~-~I~~~aF 110 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGE---ANFNSCYNMTKVTVAST-VTSIGDGAFAD--TKLQSYTGMER-VK-KFGDYVF 110 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTT--CCCCEEEECTT-CC-EECTTTT
T ss_pred cccccccCCEEEEeCC-CccChHH---HHhhCCCCCCEEEeCCc-ceEechhhhcC--CCCceEECCce-ee-Eecccee
Confidence 4556667788888764 3555554 45666778888888654 55444444443 25666666543 44 6666667
Q ss_pred cCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCC
Q 042944 162 SNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGN 227 (637)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n 227 (637)
... +|+.+.+..+ +..+. .+|.++ +++.+.+..+ +......+|..+. +++...+...
T Consensus 111 ~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~-----~l~~~~~~~~ 168 (379)
T 4h09_A 111 QGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAE-----NLEKIEVSSN 168 (379)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCT-----TCCEEEECTT
T ss_pred ccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccc-----cccccccccc
Confidence 654 6777777654 33332 234433 4555555443 2223344454444 5666655543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2e-08 Score=102.19 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=53.2
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhc
Q 042944 82 VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF 161 (637)
Q Consensus 82 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~ 161 (637)
.+|..+.+|+.++|..+ ++.+.. .+|.++ +|+.+.+..+ +...... .+.. .+|+.+.+..+ +. .+...+|
T Consensus 63 ~aF~~C~~L~~I~lp~~-v~~Ig~---~aF~~c-~l~~i~~~~~-l~~I~~~-aF~~-~~L~~i~lp~~-~~-~i~~~~F 132 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST-VTSIGD---GAFADT-KLQSYTGMER-VKKFGDY-VFQG-TDLDDFEFPGA-TT-EIGNYIF 132 (379)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECT---TTTTTC-CCCEEEECTT-CCEECTT-TTTT-CCCSEEECCTT-CC-EECTTTT
T ss_pred HHhhCCCCCCEEEeCCc-ceEech---hhhcCC-CCceEECCce-eeEeccc-eecc-CCcccccCCCc-cc-ccccccc
Confidence 45666667777776543 444543 233333 4566655443 3322222 2333 45667766653 33 4445455
Q ss_pred cCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCc
Q 042944 162 SNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNN 199 (637)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~ 199 (637)
.++ +|+.+.+..+ ++.+ ..+|.++.+++.+.+..+.
T Consensus 133 ~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 133 YNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN 169 (379)
T ss_dssp TTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC
T ss_pred ccc-eeeeeeccce-eeccccchhccccccccccccccc
Confidence 544 4555554433 3332 2345666666666665443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=9.2e-10 Score=110.02 Aligned_cols=136 Identities=13% Similarity=0.226 Sum_probs=90.4
Q ss_pred CCccEEeCCCCCCcccCchhhh--ccCCCcEEeccC--ccC-CCCccccccccCCccc--cCCCCCcEEEcCCCcccccC
Q 042944 479 EYFSYLDVSDNLLSGELPDCLL--RWQALAVLNLAN--NNF-SGNFLTFFVGEIPPSL--KKCNELKIIDAGDNKFSGTI 551 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l-~~~~~~~~~~~~~~~l--~~l~~L~~L~ls~n~l~~~~ 551 (637)
++|+.|++..|.+.......+. .+|+|+.|+|+. |.. .+.... .+...+ ..+++|++|++++|.+.+..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~----~l~~~l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN----VFRPLFSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG----GTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH----HHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence 7778888877777654444454 678999998853 221 111010 111112 35789999999999887555
Q ss_pred Chhhhh--cCCCCcEEeccCcccccc----CCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCe
Q 042944 552 PAWIGD--TLPKLAILSLRSNQFHGS----IPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNST 619 (637)
Q Consensus 552 ~~~l~~--~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~ 619 (637)
+..+++ .+++|++|+|++|.+.+. ++..+..+++|+.|++++|.+++..-..+...- ..++++++++
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 545543 478899999999998753 445556789999999999998765444444311 3678888887
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=1.9e-09 Score=108.47 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred cEEEcccc-cccCcccccccccCCCccEEeCCC-CCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCC
Q 042944 457 TSLNLSNN-KFSGPISSLCSISGEYFSYLDVSD-NLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKC 534 (637)
Q Consensus 457 ~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l 534 (637)
..++++++ +++..+. +. ..++|+.|+|++ |.+++..+..|.++++|+.|+|++|.|++ ..|..+.++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l 79 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHFT 79 (347)
T ss_dssp SCEECCSSCCCTTTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGSC
T ss_pred CEEEcCCCCCCCccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--------eCHHHhcCC
Confidence 45788887 8876544 22 237899999996 99998888899999999999999999883 344567899
Q ss_pred CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573 (637)
Q Consensus 535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~ 573 (637)
++|++|++++|.++ .+|...+..++ |+.|+|++|++.
T Consensus 80 ~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999999998 78877775454 999999999987
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=3.4e-09 Score=105.88 Aligned_cols=136 Identities=12% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCCccEEEcccccccCccccccc-ccCCCccEEeCCCC--C-Ccc----cCchhh--hccCCCcEEeccCccCCCCcccc
Q 042944 453 PGNVTSLNLSNNKFSGPISSLCS-ISGEYFSYLDVSDN--L-LSG----ELPDCL--LRWQALAVLNLANNNFSGNFLTF 522 (637)
Q Consensus 453 ~~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n--~-l~~----~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~ 522 (637)
.++|++|++..|.+......... ...|+|+.|+|+.+ . ..+ .+...+ ..+|+|+.|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45666666666655432211111 12366777766421 1 100 111122 24678888888888776321111
Q ss_pred ccccCCccccCCCCCcEEEcCCCcccccCChhhh---hcCCCCcEEeccCccccccCCccccC-CCCCcEeeCCCCc
Q 042944 523 FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG---DTLPKLAILSLRSNQFHGSIPRNLCR-LSKIQLLDFSLNS 595 (637)
Q Consensus 523 ~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~---~~l~~L~~L~L~~n~~~~~~~~~l~~-l~~L~~L~ls~n~ 595 (637)
+.. ...+++|++|+++.|.+.+.....+. +++++|+.|+|++|.++...-..+.. + ...++++++.
T Consensus 272 ----la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 272 ----FLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ----HHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ----HHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 000 12467888888888888754332222 24688888888888877443333332 2 3567888776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.2e-08 Score=91.82 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=83.7
Q ss_pred hcCCCCCcEEEcCCC-CCCCCCccc-ccccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCCCCCC---
Q 042944 84 ITSLASLRDLYLASS-TLLSINRPS-LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQLAGP--- 155 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~l~~~--- 155 (637)
+...++|++|+|++| .+.+..... ...+...++|++|+|++|.+.+.....+.+.+ ++|++|+|++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 567888999999988 877643222 24456678899999999998876554443332 6788999998888622
Q ss_pred -CCchhccCCCCCCEEEc--CCCcccc-----hhhhcCCCCCCcEEEcCCCcCC
Q 042944 156 -IPDYAFSNMTALQHLNL--SLNQISA-----ISKSFGNMCGLKTLHLFDNNLT 201 (637)
Q Consensus 156 -l~~~~~~~l~~L~~L~L--~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~ 201 (637)
+.. ++...++|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 112 ~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 222 4667778888888 7788876 4556677788888888888764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=4e-08 Score=88.47 Aligned_cols=116 Identities=12% Similarity=0.138 Sum_probs=83.4
Q ss_pred cccCCCCCccEEECCCC-CCCchhhhHHHhh---cCCCcEEECCCCCCCCC----CCchhccCCCCCCEEEcCCCcccc-
Q 042944 109 SSMNSSTSLTLLDLSSC-GLSNSAYHWLFKI---SSNLLALDLNSNQLAGP----IPDYAFSNMTALQHLNLSLNQISA- 179 (637)
Q Consensus 109 ~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~---~~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~l~~- 179 (637)
..+...++|++|+|++| .+.+.....+... .++|++|+|++|.+... +.. .+...++|++|+|++|.|.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHH
Confidence 45667799999999999 9987665544443 27799999999988621 222 45566889999999998887
Q ss_pred ----hhhhcCCCCCCcEEEc--CCCcCCCCchhHh----hhcccCCCCcccEEEcCCCCCC
Q 042944 180 ----ISKSFGNMCGLKTLHL--FDNNLTGQLPELF----LNLSGCSKNSLEILKLGGNKLT 230 (637)
Q Consensus 180 ----l~~~~~~l~~L~~L~l--~~n~i~~~~~~~l----~~l~~~~~~~L~~L~l~~n~~~ 230 (637)
+..++...+.|++|++ ++|.+.......+ ...+ +|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-----~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-----TLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-----SCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-----CcCEEeccCCCCC
Confidence 5667888888999999 7788875443333 3334 6777777776553
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=8.9e-08 Score=90.50 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=50.9
Q ss_pred cCCCCCcEEEcCCCcccc--cCChhhhhcCCCCcEEeccCccccccCCccccCCC--CCcEeeCCCCccccccc------
Q 042944 532 KKCNELKIIDAGDNKFSG--TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS--KIQLLDFSLNSISGAIP------ 601 (637)
Q Consensus 532 ~~l~~L~~L~ls~n~l~~--~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~ls~n~l~~~~p------ 601 (637)
.++++|++|++++|.+++ .++..+. .+++|+.|+|++|++++. ..+..+. +|++|++++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 456677777777777763 2233333 577777777777777643 2233344 77788888888776554
Q ss_pred -ccccccccceeec
Q 042944 602 -KCINNLTAMVEKA 614 (637)
Q Consensus 602 -~~l~~l~~L~~l~ 614 (637)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2456777777765
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=2.9e-07 Score=80.46 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=57.6
Q ss_pred CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC-CCchhhhHHHhh---cCCCcEEECCCCC-CCCCCCchhcc
Q 042944 88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-LSNSAYHWLFKI---SSNLLALDLNSNQ-LAGPIPDYAFS 162 (637)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~---~~~L~~L~L~~n~-l~~~l~~~~~~ 162 (637)
.+|++|+++++.+++.. +..+..+++|++|+|++|. +++.....+... +++|++|++++|. ++ +-.-..+.
T Consensus 61 ~~L~~LDLs~~~Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG
T ss_pred ceEeEEeCcCCCccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh
Confidence 36788888888766654 4666777888888888874 776666666652 2467888888774 55 32222456
Q ss_pred CCCCCCEEEcCCCc-ccc
Q 042944 163 NMTALQHLNLSLNQ-ISA 179 (637)
Q Consensus 163 ~l~~L~~L~L~~n~-l~~ 179 (637)
++++|++|++++|. +++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 66777777777663 443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=8.4e-07 Score=83.81 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=47.7
Q ss_pred cCCCcEEECCCCCCCCCCCc--hhccCCCCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCch-------hH
Q 042944 139 SSNLLALDLNSNQLAGPIPD--YAFSNMTALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQLP-------EL 207 (637)
Q Consensus 139 ~~~L~~L~L~~n~l~~~l~~--~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~~-------~~ 207 (637)
+++|++|+|++|.++ .++. ..+..+++|++|+|++|+++.+.+ .+..+ +|++|++++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 467777777777776 3332 144567777777777777776521 23333 77777777777764332 23
Q ss_pred hhhcccCCCCcccEEEc
Q 042944 208 FLNLSGCSKNSLEILKL 224 (637)
Q Consensus 208 l~~l~~~~~~~L~~L~l 224 (637)
+..++ +|+.|+-
T Consensus 247 l~~~P-----~L~~LDg 258 (267)
T 3rw6_A 247 RERFP-----KLLRLDG 258 (267)
T ss_dssp HHHCT-----TCCEESS
T ss_pred HHHCc-----ccCeECC
Confidence 55555 7777663
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=9.3e-07 Score=77.23 Aligned_cols=85 Identities=7% Similarity=0.035 Sum_probs=58.1
Q ss_pred CceeEEeccCCcCCCCccccccCCCCccEEEeeCCC-CCCccchhhhhc---CCCccEEECCCCc-CCCcccccccCCCC
Q 042944 360 FQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTE-ISDAVPSWFWDL---SPNLYYLNLSHNH-LEGTVLDLSLNYAG 434 (637)
Q Consensus 360 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~~~~~---~~~L~~L~l~~n~-i~~~~~~~~~~~~~ 434 (637)
..|+.|++++|.++..-...+..+++|+.|+|++|. +++.....+... .++|++|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777665555666778888888888874 666555555542 2468888888874 77666666666777
Q ss_pred CCeEeCCCCc
Q 042944 435 YPGIDLSSND 444 (637)
Q Consensus 435 L~~L~l~~n~ 444 (637)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=1.8e-05 Score=70.53 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=75.8
Q ss_pred hcCCCCCcEEEcCCC-CCCCCCccc-ccccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCCCCCCCCc
Q 042944 84 ITSLASLRDLYLASS-TLLSINRPS-LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQLAGPIPD 158 (637)
Q Consensus 84 ~~~~~~L~~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~l~~~l~~ 158 (637)
+.+-+.|++|+|+++ .+.+....+ ..++..-++|++|+|++|.+.+....++...+ +.|++|+|++|.|. .-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig-~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT-PELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC-HHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC-HHHH
Confidence 355678888888875 666532211 24566668888888888888876665554322 67888888888876 3211
Q ss_pred ----hhccCCCCCCEEEcCCC---cccc-----hhhhcCCCCCCcEEEcCCCcC
Q 042944 159 ----YAFSNMTALQHLNLSLN---QISA-----ISKSFGNMCGLKTLHLFDNNL 200 (637)
Q Consensus 159 ----~~~~~l~~L~~L~L~~n---~l~~-----l~~~~~~l~~L~~L~l~~n~i 200 (637)
.++..-+.|++|+|+++ .+.. +.+.+...+.|+.|+++.+.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 13455667888888754 3343 445566677788888776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=6.5e-05 Score=66.87 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=76.0
Q ss_pred ccCCCCCccEEECCCC-CCCchhhhHHHhhc---CCCcEEECCCCCCCCCCCc----hhccCCCCCCEEEcCCCcccc--
Q 042944 110 SMNSSTSLTLLDLSSC-GLSNSAYHWLFKIS---SNLLALDLNSNQLAGPIPD----YAFSNMTALQHLNLSLNQISA-- 179 (637)
Q Consensus 110 ~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~---~~L~~L~L~~n~l~~~l~~----~~~~~l~~L~~L~L~~n~l~~-- 179 (637)
.+.+-+.|++|+|++| .|.+.....+.+.+ ..|++|+|++|.+. .-.. .++..-+.|++|+|++|.|..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 3455688999999985 88876655444432 57999999999886 3221 144566789999999998887
Q ss_pred ---hhhhcCCCCCCcEEEcCCCc---CCCC----chhHhhhcccCCCCcccEEEcCCCC
Q 042944 180 ---ISKSFGNMCGLKTLHLFDNN---LTGQ----LPELFLNLSGCSKNSLEILKLGGNK 228 (637)
Q Consensus 180 ---l~~~~~~l~~L~~L~l~~n~---i~~~----~~~~l~~l~~~~~~~L~~L~l~~n~ 228 (637)
+.+++...+.|++|+++++. +... +...+..-+ .|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-----tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-----SLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-----SCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-----CcCeEeccCCC
Confidence 55677777889999998653 3322 223344444 67777776553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0026 Score=52.73 Aligned_cols=58 Identities=16% Similarity=0.313 Sum_probs=39.8
Q ss_pred cEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944 506 AVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573 (637)
Q Consensus 506 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~ 573 (637)
..++.+++.++.. .+|..+ -++|++|++++|+|+ .++...+..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~-------~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWA-------SLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTT-------TSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccc-------cCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 4677777776511 233322 135788888888887 777777777888888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.14 E-value=0.0093 Score=49.34 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=21.5
Q ss_pred CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCC
Q 042944 479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS 516 (637)
Q Consensus 479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 516 (637)
++++.|+|++|.|+...+..|..+++|+.|+|.+|++.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34555555555555444455556666666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.39 E-value=6.3 Score=30.24 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=28.0
Q ss_pred CCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCC
Q 042944 151 QLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDN 198 (637)
Q Consensus 151 ~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n 198 (637)
.++ .|...+|.++.+|+.+.+..+ ++.| ..+|.+|.+|+.+.+...
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444 566666777777777776654 3443 235667777777766543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.23 E-value=34 Score=26.04 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=25.6
Q ss_pred cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccC
Q 042944 298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF 345 (637)
Q Consensus 298 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 345 (637)
.++.....+|.+|.+|+.+.+-.+ ++. +....|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSC-CCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hhe-EcHHHHhccCCccEEEEcC
Confidence 344444555666666666666543 221 3334566666666666654
Done!