BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042945
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 31/131 (23%)
Query: 22 FYEQVLGFVMIKR---PSFNF-------------------EGAWLFNHGIGIHLL----- 54
FY +VLG ++++ P+ F + AW F+ + L
Sbjct: 48 FYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGT 107
Query: 55 ESDKAPE-KRGKINPKD-NHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFH 112
E D+ G +P+ HI D+ ++ EE+ +++ D+G ++ F
Sbjct: 108 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF-VKKPDDGKMK-GLAFIQ 165
Query: 113 DPDGYMIEICN 123
DPDGY IEI N
Sbjct: 166 DPDGYWIEILN 176
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 64 GKINPKD-NHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122
G +P+ HI D+ ++ EE+ +++ D+G ++ F DPDGY IEI
Sbjct: 121 GNSDPRGFGHIGIAVPDVYSACKRFEELGVKF-VKKPDDGKMK-GLAFIQDPDGYWIEIL 178
Query: 123 N 123
N
Sbjct: 179 N 179
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 64 GKINPKD-NHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122
G +P+ HI D+ ++ EE+ +++ D+G ++ F DPDGY IEI
Sbjct: 117 GNSDPRGFGHIGIAVPDVYSACKRFEELGVKF-VKKPDDGKMK-GLAFIQDPDGYWIEIL 174
Query: 123 N 123
N
Sbjct: 175 N 175
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 6 LNHXXXXXXXXXXXXMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGK 65
++H FYE+VLGF + N + I +H E + P K +
Sbjct: 24 IDHLVLTVSDISTTIRFYEEVLGFSAVTFKQ-NRKALIFGAQKINLHQQEXEFEP-KASR 81
Query: 66 INPKDNHISFQCSD-MKLVMRKLEEMNIEYETAVVDEGGI--QVDQLFFHDPDGYMIEIC 122
P + F S + V+ ++ + I V+ G ++ ++ DPDG +IEI
Sbjct: 82 PTPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRDPDGNLIEIS 141
Query: 123 N 123
Sbjct: 142 Q 142
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 64 GKINPKD-NHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122
G +P+ HI D+ ++ EE+ +++ D+G ++ F DPDGY I+I
Sbjct: 117 GNSDPRGFGHIGIAVPDVYSACKRFEELGVKF-VKKPDDGKMK-GLAFIQDPDGYWIQIL 174
Query: 123 N 123
N
Sbjct: 175 N 175
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 23/136 (16%)
Query: 3 ILSLNHXXXXXXXXXXXXMFYEQVLGFVMIKRPSFNFEGAWL-FNH-GIGIHLLESDKAP 60
I L+H FYE+VLG K SF L F H I +H L ++
Sbjct: 8 ISHLDHLVLTVADIPTTTNFYEKVLG---XKAVSFGAGRIALEFGHQKINLHQLGNE--- 61
Query: 61 EKRGKINPKDNHISFQCSDMKLVM--------RKLEEMNIEYETAVVDEGGIQ--VDQLF 110
PK ++ +D+ + + +E+ + V G Q + +
Sbjct: 62 -----FEPKAQNVRVGSADLCFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITSFY 116
Query: 111 FHDPDGYMIEICNCQN 126
F DPDG +IE+ N
Sbjct: 117 FRDPDGNLIEVSTYSN 132
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 5/127 (3%)
Query: 3 ILSLNHXXXXXXXXXXXXMFYEQVLGFVMIKRPSFNFEGAWLFNH-GIGIHLLESDKAPE 61
I L+H FYE+VLG + S A F H I +H L + P+
Sbjct: 8 ISHLDHLVLTVADIPTTTKFYEKVLGXKAVSFGSGRI--ALEFGHQKINLHQLGHEFEPK 65
Query: 62 KRGKINPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQ--VDQLFFHDPDGYMI 119
+ + D+ +E + V G Q + +F DPDG +I
Sbjct: 66 AQNVRTGSADLCFITDIDLSDAXEYVENQGVVIXEGPVKRTGAQGAITSFYFRDPDGNLI 125
Query: 120 EICNCQN 126
E+ N
Sbjct: 126 EVSTYSN 132
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 1 MPILSLNHXXXXXXXXXXXXMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAP 60
M I ++H FYE+VLGF + N + I +H E + P
Sbjct: 19 MIIDRIDHLVLTVSDISTTIRFYEEVLGFSAVTFKQ-NRKALIFGAQKINLHQQEMEFEP 77
Query: 61 EKRGKINPKDNHISFQCSD-MKLVMRKLEEMNIEYETAVVDEGGI--QVDQLFFHDPDGY 117
K + P + F S + V+ ++ + I V+ G ++ ++ DPDG
Sbjct: 78 -KASRPTPGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGN 136
Query: 118 MIEICN 123
+IEI
Sbjct: 137 LIEISQ 142
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 21 MFYEQVLGF---VMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQC 77
FY ++LGF ++ +NF W+ + L E K N + H SF+
Sbjct: 44 QFYTEILGFEAGLLDSARRWNF--LWVSGRAGXVVLQEE--------KENWQQQHFSFRV 93
Query: 78 --SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122
S+++ + + LE + V E Q L+F DP+G+ +E
Sbjct: 94 EKSEIEPLKKALESKGVSVHGPVNQEW-XQAVSLYFADPNGHALEFT 139
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 71 NHISFQCSDMKLV---MRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126
HI+ D+K + MRK ++ I+YE DE G F DPDGY IE+ N +
Sbjct: 79 GHIAIGVEDVKELVADMRK-HDVPIDYE----DESGFMA---FVVDPDGYYIELLNEKT 129
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 71 NHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEI 121
H++F+ ++ V+ L E IE E VD+ + FF DPDG +E+
Sbjct: 75 RHLAFKVEHIEEVIAFLNEQGIETEPLRVDDFTGKKXTFFF-DPDGLPLEL 124
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens
Chaperone Alphab-Crystallin Elucidated By A Triple
Hybrid Approach
Length = 175
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 32 IKRPSFNFEG-AWLFNHGIGIHLLESDKAP 60
I+RP F F + LF+ G HLLESD P
Sbjct: 10 IRRPFFPFHSPSRLFDQFFGEHLLESDLFP 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,132,867
Number of Sequences: 62578
Number of extensions: 141872
Number of successful extensions: 321
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 12
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)