Query 042945
Match_columns 172
No_of_seqs 132 out of 1268
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.9 7.7E-21 1.7E-25 129.0 14.9 122 1-123 2-128 (129)
2 cd08342 HPPD_N_like N-terminal 99.9 1.9E-20 4E-25 128.7 15.2 121 6-127 1-126 (136)
3 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 2.9E-20 6.2E-25 128.3 15.4 120 3-124 1-141 (142)
4 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 6.6E-20 1.4E-24 123.1 14.6 120 3-123 1-125 (125)
5 cd09014 BphC-JF8_C_like C-term 99.8 1.1E-19 2.4E-24 129.0 15.4 148 1-152 2-159 (166)
6 cd07243 2_3_CTD_C C-terminal d 99.8 8.5E-20 1.9E-24 126.5 14.1 117 1-124 2-125 (143)
7 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 6.7E-20 1.4E-24 120.7 12.7 113 6-121 1-114 (114)
8 PLN02367 lactoylglutathione ly 99.8 2E-19 4.2E-24 132.1 16.1 121 5-127 75-225 (233)
9 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 2.2E-19 4.9E-24 120.5 15.1 121 3-124 1-125 (125)
10 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.5E-19 3.2E-24 121.6 14.2 117 5-122 1-125 (125)
11 PLN03042 Lactoylglutathione ly 99.8 3.2E-19 6.9E-24 128.1 16.1 122 4-127 26-177 (185)
12 TIGR03645 glyox_marine lactoyl 99.8 2.3E-19 5E-24 126.8 14.5 124 4-127 3-154 (162)
13 PRK04101 fosfomycin resistance 99.8 3.2E-19 6.8E-24 123.0 14.6 119 2-126 1-121 (139)
14 cd07257 THT_oxygenase_C The C- 99.8 1.5E-19 3.3E-24 126.6 12.7 121 5-127 1-128 (153)
15 cd08364 FosX FosX, a fosfomyci 99.8 4.5E-19 9.8E-24 121.0 14.8 116 3-125 2-123 (131)
16 cd08347 PcpA_C_like C-terminal 99.8 4.9E-19 1.1E-23 124.5 14.9 117 5-127 1-123 (157)
17 cd09011 Glo_EDI_BRP_like_23 Th 99.8 4.5E-19 9.7E-24 119.0 13.6 116 4-124 1-119 (120)
18 cd07247 SgaA_N_like N-terminal 99.8 1E-18 2.3E-23 116.0 14.9 113 6-123 1-114 (114)
19 TIGR03081 metmalonyl_epim meth 99.8 3.4E-19 7.3E-24 120.5 12.2 119 5-123 1-128 (128)
20 TIGR00068 glyox_I lactoylgluta 99.8 1.4E-18 3E-23 121.3 15.0 123 2-126 14-143 (150)
21 cd07263 Glo_EDI_BRP_like_16 Th 99.8 1.2E-18 2.5E-23 115.9 14.0 114 8-123 1-119 (119)
22 cd08363 FosB FosB, a fosfomyci 99.8 1E-18 2.3E-23 119.3 13.3 115 6-126 1-117 (131)
23 cd07233 Glyoxalase_I Glyoxalas 99.8 1.9E-18 4.2E-23 115.7 14.1 114 6-122 1-121 (121)
24 cd07265 2_3_CTD_N N-terminal d 99.8 1.9E-18 4.1E-23 116.3 14.0 114 3-125 2-120 (122)
25 cd07237 BphC1-RGP6_C_like C-te 99.8 1.3E-18 2.9E-23 122.0 13.6 118 3-128 7-135 (154)
26 cd08360 MhqB_like_C C-terminal 99.8 3.9E-18 8.4E-23 116.8 15.4 115 4-127 2-123 (134)
27 cd08362 BphC5-RrK37_N_like N-t 99.8 1.9E-18 4.2E-23 115.6 13.6 115 3-126 1-119 (120)
28 cd07264 Glo_EDI_BRP_like_15 Th 99.8 3.5E-18 7.5E-23 115.1 14.9 116 6-123 1-124 (125)
29 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 4.8E-18 1E-22 115.0 15.5 117 5-123 1-127 (128)
30 cd07255 Glo_EDI_BRP_like_12 Th 99.8 6.8E-18 1.5E-22 113.7 15.6 116 4-126 1-121 (125)
31 cd08351 ChaP_like ChaP, an enz 99.8 4E-18 8.6E-23 115.0 14.3 111 3-124 2-121 (123)
32 PLN02300 lactoylglutathione ly 99.8 4.1E-18 8.9E-23 130.7 15.9 126 1-128 20-152 (286)
33 cd07267 THT_Oxygenase_N N-term 99.8 4.9E-18 1.1E-22 112.9 14.3 110 3-124 1-110 (113)
34 cd09013 BphC-JF8_N_like N-term 99.8 3.4E-18 7.3E-23 114.9 13.1 114 1-125 2-119 (121)
35 PRK06724 hypothetical protein; 99.8 6.8E-18 1.5E-22 114.8 14.3 111 3-124 5-123 (128)
36 cd08346 PcpA_N_like N-terminal 99.8 5.8E-18 1.3E-22 113.8 13.5 115 5-122 1-126 (126)
37 PF00903 Glyoxalase: Glyoxalas 99.8 4.9E-19 1.1E-23 119.1 8.3 117 5-121 1-128 (128)
38 cd07256 HPCD_C_class_II C-term 99.8 6.4E-18 1.4E-22 119.3 14.3 142 4-152 2-154 (161)
39 cd08355 Glo_EDI_BRP_like_14 Th 99.8 1.5E-17 3.3E-22 111.8 15.1 115 9-124 3-122 (122)
40 PRK10291 glyoxalase I; Provisi 99.8 6.9E-18 1.5E-22 114.7 13.4 115 10-126 1-122 (129)
41 cd07252 BphC1-RGP6_N_like N-te 99.8 7.2E-18 1.6E-22 113.3 13.3 113 4-125 1-118 (120)
42 cd08361 PpCmtC_N N-terminal do 99.8 6.2E-18 1.3E-22 114.3 12.9 110 2-124 3-119 (124)
43 cd07249 MMCE Methylmalonyl-CoA 99.8 5.6E-18 1.2E-22 114.3 12.3 118 6-123 1-128 (128)
44 cd07239 BphC5-RK37_C_like C-te 99.8 1.5E-17 3.2E-22 115.4 14.5 113 4-127 3-120 (144)
45 cd08348 BphC2-C3-RGP6_C_like T 99.8 2.6E-17 5.6E-22 112.4 15.4 116 5-126 1-122 (134)
46 cd08359 Glo_EDI_BRP_like_22 Th 99.8 2.2E-17 4.7E-22 110.4 14.6 112 8-123 4-119 (119)
47 cd07235 MRD Mitomycin C resist 99.8 1.7E-17 3.7E-22 111.5 13.5 114 6-122 1-121 (122)
48 cd07240 ED_TypeI_classII_N N-t 99.8 2E-17 4.4E-22 110.0 13.7 111 4-125 1-115 (117)
49 cd07258 PpCmtC_C C-terminal do 99.8 1.5E-17 3.3E-22 114.9 13.5 114 7-128 1-118 (141)
50 cd07266 HPCD_N_class_II N-term 99.8 1.2E-17 2.6E-22 112.1 12.5 114 2-125 1-119 (121)
51 cd08349 BLMA_like Bleomycin bi 99.8 3.3E-17 7.1E-22 108.1 14.1 109 10-123 3-112 (112)
52 cd08345 Fosfomycin_RP Fosfomyc 99.8 1.8E-17 3.9E-22 109.8 12.7 108 8-123 1-110 (113)
53 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 6.1E-17 1.3E-21 108.4 15.1 114 9-123 5-121 (122)
54 cd07244 FosA FosA, a Fosfomyci 99.8 2.9E-17 6.4E-22 110.4 12.9 108 5-124 1-110 (121)
55 cd08343 ED_TypeI_classII_C C-t 99.8 7.3E-17 1.6E-21 110.0 15.0 114 7-128 1-121 (131)
56 cd09012 Glo_EDI_BRP_like_24 Th 99.8 2.4E-17 5.1E-22 111.2 12.5 114 6-123 1-123 (124)
57 PF12681 Glyoxalase_2: Glyoxal 99.8 4.4E-17 9.5E-22 107.0 12.8 103 11-122 1-108 (108)
58 cd08350 BLMT_like BLMT, a bleo 99.8 7.2E-17 1.6E-21 108.3 13.9 108 8-124 5-119 (120)
59 cd08357 Glo_EDI_BRP_like_18 Th 99.8 6.8E-17 1.5E-21 108.7 13.7 114 8-124 2-125 (125)
60 cd08354 Glo_EDI_BRP_like_13 Th 99.7 1E-16 2.2E-21 107.4 14.3 114 6-123 1-121 (122)
61 TIGR03211 catechol_2_3 catecho 99.7 5E-17 1.1E-21 125.6 14.1 117 1-123 141-264 (303)
62 cd07261 Glo_EDI_BRP_like_11 Th 99.7 9.8E-17 2.1E-21 106.5 13.6 108 9-122 2-113 (114)
63 cd08356 Glo_EDI_BRP_like_17 Th 99.7 1E-16 2.2E-21 106.7 12.7 104 9-123 5-113 (113)
64 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1E-16 2.3E-21 123.2 14.5 145 2-153 133-288 (294)
65 cd07262 Glo_EDI_BRP_like_19 Th 99.7 1.8E-16 3.9E-21 106.6 13.8 112 6-122 1-122 (123)
66 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 1.6E-16 3.5E-21 105.2 13.3 106 8-124 3-111 (112)
67 cd07254 Glo_EDI_BRP_like_20 Th 99.7 2.7E-16 5.8E-21 105.4 14.3 112 7-125 3-118 (120)
68 cd06587 Glo_EDI_BRP_like This 99.7 1.9E-16 4E-21 103.3 12.5 111 8-121 1-112 (112)
69 cd08358 Glo_EDI_BRP_like_21 Th 99.7 3.6E-16 7.9E-21 105.8 13.4 108 4-123 1-126 (127)
70 cd08344 MhqB_like_N N-terminal 99.7 3.9E-16 8.5E-21 103.5 12.8 105 4-124 1-109 (112)
71 cd07251 Glo_EDI_BRP_like_10 Th 99.7 6E-16 1.3E-20 103.4 13.2 112 9-123 2-120 (121)
72 TIGR03213 23dbph12diox 2,3-dih 99.7 9.9E-16 2.2E-20 117.5 14.3 116 3-125 140-264 (286)
73 TIGR03211 catechol_2_3 catecho 99.7 3.1E-15 6.7E-20 115.6 14.0 112 3-127 2-121 (303)
74 TIGR03213 23dbph12diox 2,3-dih 99.6 6.7E-15 1.4E-19 112.9 14.1 113 3-126 1-120 (286)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.6 6.3E-15 1.4E-19 113.3 13.5 111 3-126 2-117 (294)
76 COG3324 Predicted enzyme relat 99.6 4E-14 8.6E-19 94.7 13.9 116 3-124 7-125 (127)
77 PLN02300 lactoylglutathione ly 99.6 4.3E-14 9.2E-19 108.5 14.3 120 4-125 153-279 (286)
78 PF13669 Glyoxalase_4: Glyoxal 99.6 2.5E-14 5.5E-19 94.5 9.5 92 7-98 1-97 (109)
79 COG3607 Predicted lactoylgluta 99.6 7.7E-14 1.7E-18 91.4 10.3 119 5-126 3-129 (133)
80 COG2514 Predicted ring-cleavag 99.5 2.1E-13 4.7E-18 100.9 13.3 118 4-127 9-129 (265)
81 KOG2944 Glyoxalase [Carbohydra 99.5 1.5E-12 3.2E-17 88.9 12.1 119 4-124 21-168 (170)
82 cd07250 HPPD_C_like C-terminal 99.4 9.3E-13 2E-17 95.4 8.6 145 3-148 1-179 (191)
83 COG3565 Predicted dioxygenase 99.4 2E-11 4.3E-16 79.0 11.5 119 4-126 3-131 (138)
84 cd06588 PhnB_like Escherichia 99.4 6.1E-11 1.3E-15 80.5 13.6 109 9-122 3-128 (128)
85 TIGR01263 4HPPD 4-hydroxypheny 99.3 9.6E-12 2.1E-16 98.2 10.2 147 1-148 154-333 (353)
86 COG0346 GloA Lactoylglutathion 99.2 3.6E-11 7.8E-16 80.4 7.5 117 4-123 1-138 (138)
87 TIGR01263 4HPPD 4-hydroxypheny 99.2 1.9E-10 4.2E-15 90.8 12.1 121 4-124 1-127 (353)
88 COG2764 PhnB Uncharacterized p 99.2 2.5E-09 5.4E-14 72.8 13.7 116 9-126 4-133 (136)
89 KOG2943 Predicted glyoxalase [ 99.2 1.6E-10 3.5E-15 84.1 7.8 138 4-150 16-171 (299)
90 PRK01037 trmD tRNA (guanine-N( 99.1 4.2E-10 9.1E-15 86.8 9.8 106 5-125 247-355 (357)
91 PLN02875 4-hydroxyphenylpyruva 98.8 9.5E-09 2.1E-13 81.7 7.3 123 3-125 178-341 (398)
92 KOG2943 Predicted glyoxalase [ 98.8 6E-08 1.3E-12 70.9 8.6 119 5-126 149-272 (299)
93 PRK10148 hypothetical protein; 98.7 2E-06 4.4E-11 59.7 14.7 112 9-126 5-143 (147)
94 COG2514 Predicted ring-cleavag 98.7 1.4E-07 3.1E-12 70.2 9.4 74 4-80 167-243 (265)
95 KOG0638 4-hydroxyphenylpyruvat 98.6 2.4E-07 5.1E-12 70.4 7.9 114 2-115 14-139 (381)
96 PLN02875 4-hydroxyphenylpyruva 98.6 5.5E-06 1.2E-10 66.1 14.8 120 6-125 1-152 (398)
97 PF14696 Glyoxalase_5: Hydroxy 98.5 2E-06 4.3E-11 58.9 10.3 121 1-125 5-127 (139)
98 PF13468 Glyoxalase_3: Glyoxal 98.5 1.1E-06 2.3E-11 62.8 8.9 121 6-126 1-139 (175)
99 COG3185 4-hydroxyphenylpyruvat 98.4 4E-07 8.6E-12 70.2 5.2 145 3-149 165-340 (363)
100 PF14506 CppA_N: CppA N-termin 98.4 3.3E-05 7.2E-10 50.8 12.9 112 7-125 2-115 (125)
101 PF06983 3-dmu-9_3-mt: 3-demet 97.3 0.011 2.5E-07 39.2 11.1 93 14-122 11-116 (116)
102 PF15067 FAM124: FAM124 family 96.8 0.018 3.9E-07 42.5 9.1 102 5-120 128-234 (236)
103 COG3185 4-hydroxyphenylpyruvat 96.7 0.051 1.1E-06 42.6 11.4 111 2-115 19-141 (363)
104 KOG0638 4-hydroxyphenylpyruvat 96.7 0.0024 5.3E-08 49.0 4.0 123 2-124 175-337 (381)
105 PF13669 Glyoxalase_4: Glyoxal 96.5 0.02 4.4E-07 37.2 7.0 56 71-127 1-58 (109)
106 KOG2944 Glyoxalase [Carbohydra 94.6 0.23 4.9E-06 34.7 6.6 32 4-36 114-145 (170)
107 PF14507 CppA_C: CppA C-termin 94.3 0.19 4.1E-06 32.5 5.5 90 5-119 5-98 (101)
108 PF13468 Glyoxalase_3: Glyoxal 94.0 0.11 2.5E-06 36.8 4.5 54 71-126 2-56 (175)
109 cd08353 Glo_EDI_BRP_like_7 Thi 92.4 0.96 2.1E-05 30.4 7.1 57 69-125 3-70 (142)
110 cd08346 PcpA_N_like N-terminal 92.1 1.6 3.5E-05 28.2 7.7 58 69-126 1-62 (126)
111 PF06185 YecM: YecM protein; 91.3 2 4.3E-05 31.0 7.6 74 4-78 33-114 (185)
112 cd08352 Glo_EDI_BRP_like_1 Thi 90.6 3.1 6.8E-05 26.7 8.1 56 69-125 3-59 (125)
113 PRK11700 hypothetical protein; 89.8 5.9 0.00013 28.6 9.0 74 4-78 38-119 (187)
114 PF13670 PepSY_2: Peptidase pr 89.4 2.4 5.2E-05 26.1 6.2 44 79-124 30-73 (83)
115 TIGR03645 glyox_marine lactoyl 88.6 4.7 0.0001 28.1 7.9 58 69-126 4-79 (162)
116 cd07268 Glo_EDI_BRP_like_4 Thi 88.3 6.6 0.00014 27.2 10.2 72 6-78 2-81 (149)
117 PLN02367 lactoylglutathione ly 88.1 2.5 5.5E-05 31.6 6.5 53 4-57 168-223 (233)
118 cd07249 MMCE Methylmalonyl-CoA 86.3 4.7 0.0001 26.0 6.6 55 71-126 2-57 (128)
119 PLN03042 Lactoylglutathione ly 85.7 5.3 0.00012 28.8 6.9 52 5-57 121-175 (185)
120 cd08347 PcpA_C_like C-terminal 83.3 8.8 0.00019 26.6 7.1 51 69-124 1-53 (157)
121 cd07233 Glyoxalase_I Glyoxalas 81.8 11 0.00024 24.0 7.5 54 71-125 2-59 (121)
122 cd06587 Glo_EDI_BRP_like This 81.2 10 0.00022 23.2 6.5 52 72-127 1-53 (112)
123 cd07242 Glo_EDI_BRP_like_6 Thi 80.1 12 0.00025 24.3 6.5 52 69-126 1-56 (128)
124 cd07250 HPPD_C_like C-terminal 79.7 12 0.00027 26.9 7.0 57 69-125 3-64 (191)
125 cd07241 Glo_EDI_BRP_like_3 Thi 79.3 14 0.0003 23.6 7.8 54 70-124 2-56 (125)
126 PF00903 Glyoxalase: Glyoxalas 79.0 14 0.0003 23.5 8.1 57 69-126 1-59 (128)
127 cd07263 Glo_EDI_BRP_like_16 Th 78.4 14 0.0003 23.2 6.8 50 72-123 1-53 (119)
128 cd07245 Glo_EDI_BRP_like_9 Thi 77.6 13 0.00028 23.0 6.0 52 71-126 2-54 (114)
129 PRK10291 glyoxalase I; Provisi 76.7 18 0.0004 23.6 7.2 52 5-57 65-121 (129)
130 cd04882 ACT_Bt0572_2 C-termina 74.5 7.2 0.00016 22.1 3.8 26 69-94 39-64 (65)
131 cd08342 HPPD_N_like N-terminal 74.0 21 0.00045 23.8 6.5 52 5-57 69-124 (136)
132 PRK11478 putative lyase; Provi 73.0 23 0.00049 23.0 7.0 56 69-125 6-62 (129)
133 cd07237 BphC1-RGP6_C_like C-te 70.8 31 0.00067 23.6 7.7 57 68-124 8-68 (154)
134 cd04883 ACT_AcuB C-terminal AC 65.0 16 0.00034 21.2 3.9 28 70-97 42-71 (72)
135 cd08358 Glo_EDI_BRP_like_21 Th 64.3 41 0.00088 22.6 7.4 29 70-98 3-32 (127)
136 cd08360 MhqB_like_C C-terminal 63.9 33 0.00072 22.6 5.8 29 4-32 61-91 (134)
137 TIGR00068 glyox_I lactoylgluta 63.9 28 0.00061 23.5 5.5 30 4-34 85-114 (150)
138 cd07235 MRD Mitomycin C resist 63.0 37 0.0008 21.7 5.9 48 71-123 2-49 (122)
139 PF02208 Sorb: Sorbin homologo 62.3 3.2 6.9E-05 22.5 0.4 24 6-29 12-35 (47)
140 cd04895 ACT_ACR_1 ACT domain-c 61.4 33 0.00072 20.6 5.2 40 80-119 15-55 (72)
141 cd08364 FosX FosX, a fosfomyci 61.2 44 0.00096 22.0 6.7 28 69-96 4-32 (131)
142 TIGR03081 metmalonyl_epim meth 59.7 43 0.00094 21.4 6.6 53 70-124 2-55 (128)
143 PF12681 Glyoxalase_2: Glyoxal 59.3 40 0.00087 20.8 6.5 30 4-34 55-84 (108)
144 cd08344 MhqB_like_N N-terminal 58.5 44 0.00096 21.1 6.0 28 69-96 2-29 (112)
145 cd08348 BphC2-C3-RGP6_C_like T 56.0 54 0.0012 21.3 6.8 51 70-125 2-55 (134)
146 COG3865 Uncharacterized protei 55.3 68 0.0015 22.3 11.5 105 4-122 4-122 (151)
147 cd07257 THT_oxygenase_C The C- 54.0 17 0.00038 24.8 3.1 30 4-33 66-97 (153)
148 cd04906 ACT_ThrD-I_1 First of 53.4 28 0.00061 21.3 3.7 27 70-96 41-71 (85)
149 cd07255 Glo_EDI_BRP_like_12 Th 50.5 64 0.0014 20.5 6.8 49 69-124 2-52 (125)
150 PF07063 DUF1338: Domain of un 48.7 51 0.0011 25.8 5.1 29 67-95 182-216 (302)
151 cd08343 ED_TypeI_classII_C C-t 48.0 76 0.0016 20.7 7.0 51 71-123 1-53 (131)
152 COG4747 ACT domain-containing 46.1 25 0.00053 23.6 2.6 84 5-96 41-135 (142)
153 cd09014 BphC-JF8_C_like C-term 45.4 1E+02 0.0022 21.4 7.4 30 68-97 5-35 (166)
154 cd04908 ACT_Bt0572_1 N-termina 45.0 48 0.001 19.0 3.6 25 71-95 41-65 (66)
155 PF03975 CheD: CheD chemotacti 45.0 51 0.0011 21.6 4.1 44 74-119 60-103 (114)
156 cd04897 ACT_ACR_3 ACT domain-c 43.8 73 0.0016 19.3 5.4 40 80-119 15-55 (75)
157 CHL00193 ycf35 Ycf35; Provisio 43.2 1E+02 0.0022 20.8 6.1 75 75-158 9-88 (128)
158 KOG4657 Uncharacterized conser 41.5 20 0.00044 26.6 1.9 20 14-33 145-164 (246)
159 PF07494 Reg_prop: Two compone 40.2 38 0.00081 15.3 2.1 14 107-120 7-20 (24)
160 COG0253 DapF Diaminopimelate e 40.2 71 0.0015 24.6 4.7 63 67-131 152-214 (272)
161 cd07256 HPCD_C_class_II C-term 40.2 1.2E+02 0.0026 20.8 7.2 28 69-96 3-31 (161)
162 COG3102 Uncharacterized protei 39.8 1.4E+02 0.003 21.4 7.9 84 4-88 38-130 (185)
163 PRK03467 hypothetical protein; 36.3 1.5E+02 0.0032 20.6 5.9 50 78-127 5-54 (144)
164 PF08445 FR47: FR47-like prote 36.1 84 0.0018 19.2 3.9 24 10-34 59-82 (86)
165 PRK13490 chemoreceptor glutami 36.0 86 0.0019 22.1 4.3 43 75-119 109-151 (162)
166 cd04885 ACT_ThrD-I Tandem C-te 35.6 57 0.0012 18.8 2.9 26 70-95 39-67 (68)
167 cd07243 2_3_CTD_C C-terminal d 33.2 1.5E+02 0.0033 19.8 6.7 29 69-97 6-35 (143)
168 PRK13495 chemoreceptor glutami 33.0 1E+02 0.0022 21.7 4.3 43 75-119 102-144 (159)
169 PF00583 Acetyltransf_1: Acety 32.6 78 0.0017 18.3 3.3 25 5-30 58-83 (83)
170 PRK13494 chemoreceptor glutami 32.0 1.1E+02 0.0024 21.6 4.3 43 75-119 111-153 (163)
171 COG3254 Uncharacterized conser 32.0 1.5E+02 0.0032 19.3 4.7 19 107-125 41-59 (105)
172 PRK13498 chemoreceptor glutami 31.9 1.1E+02 0.0024 21.7 4.3 44 74-119 111-154 (167)
173 PF06923 GutM: Glucitol operon 31.0 1.2E+02 0.0026 19.8 4.1 51 76-126 22-72 (109)
174 COG3603 Uncharacterized conser 30.8 60 0.0013 21.7 2.6 25 71-95 103-127 (128)
175 TIGR00318 cyaB adenylyl cyclas 30.7 1.1E+02 0.0023 21.7 4.2 37 73-115 6-42 (174)
176 PRK03094 hypothetical protein; 30.0 1.4E+02 0.003 18.4 4.9 48 76-123 5-53 (80)
177 PRK13488 chemoreceptor glutami 30.0 1.2E+02 0.0027 21.2 4.3 43 75-119 104-146 (157)
178 PF13176 TPR_7: Tetratricopept 29.8 52 0.0011 16.3 1.8 21 9-29 8-28 (36)
179 PRK13497 chemoreceptor glutami 29.1 1.3E+02 0.0028 21.7 4.4 42 76-119 110-151 (184)
180 PF12142 PPO1_DWL: Polyphenol 28.7 77 0.0017 18.0 2.5 17 107-123 10-26 (54)
181 PF12687 DUF3801: Protein of u 28.5 1.7E+02 0.0037 21.4 5.0 48 68-115 32-79 (204)
182 PRK10234 DNA-binding transcrip 28.3 1.4E+02 0.003 19.9 4.0 52 76-127 23-74 (118)
183 PRK06704 RNA polymerase factor 28.0 43 0.00092 25.0 1.8 44 74-122 183-226 (228)
184 PRK13493 chemoreceptor glutami 27.9 1.3E+02 0.0028 22.3 4.2 41 77-119 138-178 (213)
185 PF00585 Thr_dehydrat_C: C-ter 27.8 83 0.0018 19.7 2.9 28 69-96 50-80 (91)
186 PRK10140 putative acetyltransf 27.7 1.1E+02 0.0024 20.4 3.8 29 5-34 112-141 (162)
187 PF13225 DUF4033: Domain of un 27.6 1.1E+02 0.0025 19.1 3.3 21 19-39 49-69 (86)
188 PF00379 Chitin_bind_4: Insect 27.1 93 0.002 17.0 2.7 16 108-123 30-45 (52)
189 PF09142 TruB_C: tRNA Pseudour 27.0 1.3E+02 0.0028 17.0 3.8 43 78-126 4-46 (56)
190 PRK13577 diaminopimelate epime 26.0 2.1E+02 0.0046 21.9 5.3 56 67-124 155-210 (281)
191 PRK13487 chemoreceptor glutami 25.7 1.6E+02 0.0034 21.7 4.3 44 74-119 123-166 (201)
192 cd04909 ACT_PDH-BS C-terminal 25.1 74 0.0016 18.1 2.2 22 73-94 45-69 (69)
193 COG5400 Uncharacterized protei 25.1 1.9E+02 0.004 20.7 4.3 37 52-88 116-152 (205)
194 PRK09437 bcp thioredoxin-depen 24.9 2.2E+02 0.0048 19.1 5.7 56 68-123 63-137 (154)
195 COG1871 CheD Chemotaxis protei 24.8 1.3E+02 0.0028 21.3 3.6 44 74-119 110-153 (164)
196 COG1225 Bcp Peroxiredoxin [Pos 24.8 2.5E+02 0.0055 19.7 6.3 55 68-122 63-136 (157)
197 COG3349 Uncharacterized conser 24.8 1.5E+02 0.0033 25.0 4.5 37 83-120 15-51 (485)
198 PRK13491 chemoreceptor glutami 24.8 2.9E+02 0.0062 20.3 6.1 45 76-122 113-157 (199)
199 PF06397 Desulfoferrod_N: Desu 24.1 1.2E+02 0.0025 15.6 2.9 19 108-126 5-23 (36)
200 PLN02536 diaminopimelate epime 23.3 1.5E+02 0.0033 22.6 4.1 57 68-126 145-204 (267)
201 PRK13489 chemoreceptor glutami 23.3 1.8E+02 0.0039 21.9 4.3 43 75-119 122-164 (233)
202 PF03698 UPF0180: Uncharacteri 22.7 2E+02 0.0043 17.7 4.5 47 76-122 5-52 (80)
203 cd04886 ACT_ThrD-II-like C-ter 22.6 1.5E+02 0.0033 16.4 3.9 24 72-95 46-72 (73)
204 PF13508 Acetyltransf_7: Acety 22.4 1.2E+02 0.0027 17.6 2.9 22 7-31 58-79 (79)
205 COG5397 Uncharacterized conser 22.3 1.7E+02 0.0036 22.9 3.9 53 73-127 161-214 (349)
206 PF11823 DUF3343: Protein of u 22.2 1.8E+02 0.0039 17.1 3.9 26 71-96 41-68 (73)
207 PRK11657 dsbG disulfide isomer 21.9 1.4E+02 0.003 22.5 3.6 42 78-119 21-70 (251)
208 PF14133 DUF4300: Domain of un 21.6 3.5E+02 0.0076 20.6 5.6 38 80-122 150-187 (250)
209 smart00459 Sorb Sorbin homolog 21.5 60 0.0013 18.0 1.1 17 14-30 23-39 (50)
210 COG0504 PyrG CTP synthase (UTP 21.2 2.2E+02 0.0048 24.1 4.7 20 109-128 478-497 (533)
211 COG4009 Uncharacterized protei 20.5 1.6E+02 0.0034 18.2 2.9 27 70-96 50-78 (88)
212 PRK15130 spermidine N1-acetylt 20.3 1.9E+02 0.0042 20.0 3.9 29 5-34 116-145 (186)
213 COG1218 CysQ 3'-Phosphoadenosi 20.0 1.5E+02 0.0032 23.0 3.3 35 83-117 54-95 (276)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.87 E-value=7.7e-21 Score=128.97 Aligned_cols=122 Identities=25% Similarity=0.375 Sum_probs=86.9
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcc----eEEEEeCCeeEEEeecCCCCc-ccCCCCCCcceEEE
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFE----GAWLFNHGIGIHLLESDKAPE-KRGKINPKDNHISF 75 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~----~~~~~~~~~~l~l~~~~~~~~-~~~~~~~g~~~v~~ 75 (172)
|.+.+|+||+|.|+|+++|.+||+++||+++......+.. ..+...++..++++....... .......+..|++|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f 81 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAF 81 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEE
Confidence 4678999999999999999999999999998643211111 112223345566665432211 11122346689999
Q ss_pred EeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 76 QCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 76 ~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
.|+|+++++++|+++|+++...... ..+|.+.+|++|||||.||+++
T Consensus 82 ~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 82 SVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999998754322 2235578999999999999986
No 2
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.86 E-value=1.9e-20 Score=128.69 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=90.7
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC-cceEEEEeCCeeEEEeecCCCCcc----cCCCCCCcceEEEEeCCH
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN-FEGAWLFNHGIGIHLLESDKAPEK----RGKINPKDNHISFQCSDM 80 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~~----~~~~~~g~~~v~~~v~dl 80 (172)
|+|+.|.|+|++++++||+++|||+...+.... ....++..++..+.+......... ......+..|++|.|+|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dv 80 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDA 80 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCH
Confidence 689999999999999999999999988764221 112223334455655543322110 012345678999999999
Q ss_pred HHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 81 KLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
++.+++|+++|+++..+|... .++.+.++++||||++|||++....
T Consensus 81 da~~~~l~~~G~~v~~~p~~~-~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 81 AAAYERAVARGAKPVQEPVEE-PGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred HHHHHHHHHcCCeEccCceec-CCeEEEEEEeccCCcEEEEEecCCC
Confidence 999999999999999888763 4577899999999999999997665
No 3
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=2.9e-20 Score=128.34 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=87.6
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCc--------------ceEEEEe--CCeeEEEeecCCCCcc----
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNF--------------EGAWLFN--HGIGIHLLESDKAPEK---- 62 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~--------------~~~~~~~--~~~~l~l~~~~~~~~~---- 62 (172)
+++++||+|.|+|+++|++||++ |||+...+..... ...++.. ++..++++....+...
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999999 9998765432111 1112221 3456777764322111
Q ss_pred -cCCCCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 63 -RGKINPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 63 -~~~~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
......|..|+||.|+|+++++++|+++|+++..++... +++.+.+|++||||+.|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~-~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQY-ENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceec-CCCeEEEEEECCCCCEEEeeec
Confidence 112345678999999999999999999999988765443 3456889999999999999973
No 4
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.85 E-value=6.6e-20 Score=123.11 Aligned_cols=120 Identities=28% Similarity=0.464 Sum_probs=86.5
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEE---EE-eCCeeEEEeecCCCCccc-CCCCCCcceEEEEe
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAW---LF-NHGIGIHLLESDKAPEKR-GKINPKDNHISFQC 77 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~---~~-~~~~~l~l~~~~~~~~~~-~~~~~g~~~v~~~v 77 (172)
+++|+||+|.|.|++++++||+++||+.............| +. .++..++++......... .....+..|++|.|
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v 80 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSV 80 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEe
Confidence 36899999999999999999999999998765311111122 22 234556666543322111 12345678999999
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
+|+++++++|+++|+++...+.. ..++.+.+|++||+||+|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVD-EFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCcccccccc-CCCceEEEEEECCCCCEEEecC
Confidence 99999999999999998875533 2335678999999999999975
No 5
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.85 E-value=1.1e-19 Score=128.96 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=99.8
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC---cceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEe
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN---FEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQC 77 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v 77 (172)
|++.+|+|+.|.|+|++++++||+++||++........ ....|+........+....... ...++..|+||.|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~~~~hiaf~v 77 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPA----GARGRLHHLAYAL 77 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCC----CCCCCceEEEEEC
Confidence 78999999999999999999999999999987552111 1134443322222121111111 1123568999999
Q ss_pred CC---HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC-C---CCCCCCCCCCCccccccccccc
Q 042945 78 SD---MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL-P---VLPLSSCPLKLPSKRSSEKAAC 150 (172)
Q Consensus 78 ~d---l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 150 (172)
+| +++++++|+++|+++...|........+++|++||+||+|||++.... . ...+...+...+...+.||++.
T Consensus 78 ~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (166)
T cd09014 78 DTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGGGYLILDPDWEPVTWTEEERKRGQAWGGKT 157 (166)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcCCceeccCCCCceecCccccccccccCCCC
Confidence 85 558889999999998765644332233569999999999999998333 2 2234455666778888898776
Q ss_pred ch
Q 042945 151 SG 152 (172)
Q Consensus 151 ~~ 152 (172)
-+
T Consensus 158 ~~ 159 (166)
T cd09014 158 LP 159 (166)
T ss_pred CC
Confidence 43
No 6
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.84 E-value=8.5e-20 Score=126.50 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=82.4
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeec-CCCc---ceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEE
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRP-SFNF---EGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQ 76 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~-~~~~---~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~ 76 (172)
|++++|+||+|.|+|++++.+||+++|||++..+. .... ...|+.. +...+.+..... ..++..|+||.
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~-~~~~h~~~~~~~------~~~~~~Hiaf~ 74 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSC-SNKPHDIAFVGG------PDGKLHHFSFF 74 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEec-CCCcceEEEecC------CCCCceEEEEE
Confidence 46789999999999999999999999999976552 1111 1233322 222222221111 12467899999
Q ss_pred eCCHHH---HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 77 CSDMKL---VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 77 v~dl~~---~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
|+|+++ ..++|.++|+++...|......+.+++||.|||||.|||.+.
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 998887 568999999998766643332235789999999999999864
No 7
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.84 E-value=6.7e-20 Score=120.75 Aligned_cols=113 Identities=36% Similarity=0.614 Sum_probs=85.3
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCe-eEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHH
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGI-GIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVM 84 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~ 84 (172)
|+|++|.|.|++++++||+++||++...+........++...+. .+++......... ....++..|++|.|+|+++++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~~~~~~~v~d~~~~~ 79 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEEDPPDAL-PEGPGRDDHIAFRVDDLDAFR 79 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEecCCCccc-cCCCcccceEEEEeCCHHHHH
Confidence 68999999999999999999999998765432223455554443 6677655433211 122345689999999999999
Q ss_pred HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEE
Q 042945 85 RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEI 121 (172)
Q Consensus 85 ~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei 121 (172)
+++.++|+++..++.. .++.+++|+.||+||+||+
T Consensus 80 ~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 80 ARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 9999999998876643 2345789999999999996
No 8
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=2e-19 Score=132.09 Aligned_cols=121 Identities=25% Similarity=0.390 Sum_probs=89.4
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC---cceEEEE-------------------eCCeeEEEeecCCCCc-
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN---FEGAWLF-------------------NHGIGIHLLESDKAPE- 61 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~-------------------~~~~~l~l~~~~~~~~- 61 (172)
.+.|+.|+|+|+++|++||+++||+++..+.++. ....++. ..+..++|+.......
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 5899999999999999999999999998764333 2233332 1124677876543221
Q ss_pred ------ccCC-CCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 62 ------KRGK-INPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 62 ------~~~~-~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
..++ ...|..||||.|+|+++++++|++.|+++...|..... .+.+|++|||||+|||++....
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccc
Confidence 0011 12478999999999999999999999999877754322 3678999999999999986553
No 9
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=2.2e-19 Score=120.50 Aligned_cols=121 Identities=22% Similarity=0.353 Sum_probs=88.1
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCC-cccCCCCCCcceEEEEeCC-H
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAP-EKRGKINPKDNHISFQCSD-M 80 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~g~~~v~~~v~d-l 80 (172)
+++|+|+.|.|.|++++++||+++||++.....+.. ...++..++..+++....... ........+..|++|.+++ +
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~~~~ 79 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV-GRKALRFGSQKINLHPVGGEFEPAAGSPGPGSDDLCLITEPPI 79 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC-CceEEEeCCEEEEEecCCCccCcCccCCCCCCceEEEEecccH
Confidence 468999999999999999999999999988764311 223333344556665433221 1122234677899999974 9
Q ss_pred HHHHHHHHhCCCeEeeceeecCC--eeEEEEEEECCCCCEEEEEee
Q 042945 81 KLVMRKLEEMNIEYETAVVDEGG--IQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~~~--~g~~~~~~~DPdG~~iei~~~ 124 (172)
++++++|.++|+++...+....+ .+.+.+|++|||||+||++++
T Consensus 80 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 80 DELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred HHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 99999999999998876644322 234789999999999999874
No 10
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=1.5e-19 Score=121.56 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=83.3
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeec---CCCcceEEEEe-CCeeEEEeecCCCCcc-cCCCCCCcceEEEEeC-
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRP---SFNFEGAWLFN-HGIGIHLLESDKAPEK-RGKINPKDNHISFQCS- 78 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~---~~~~~~~~~~~-~~~~l~l~~~~~~~~~-~~~~~~g~~~v~~~v~- 78 (172)
+|+||+|.|+|++++++||+++||++..... ..+....|+.. ++..+++++....... ......|..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~~ 80 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVGS 80 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECCC
Confidence 5799999999999999999999999975431 11222334433 3456777754322111 1123356789999995
Q ss_pred --CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 79 --DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 79 --dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
++++++++|+++|+++..++... ++|.+.++++|||||.|||.
T Consensus 81 ~~~v~~~~~~l~~~g~~~~~~~~~~-~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 81 KEAVDELTERLRADGYLIIGEPRTT-GDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred HHHHHHHHHHHHHCCCEEEeCceec-CCCeEEEEEECCCCCEEEeC
Confidence 58999999999999988766433 33446678999999999984
No 11
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=3.2e-19 Score=128.10 Aligned_cols=122 Identities=25% Similarity=0.363 Sum_probs=88.8
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC---cceEEEE-------------------eCCeeEEEeecCCCCc
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN---FEGAWLF-------------------NHGIGIHLLESDKAPE 61 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~-------------------~~~~~l~l~~~~~~~~ 61 (172)
-++.|+.|+|.|+++|++||+++|||++..+...+ ....++. ..+..++|+.......
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 46899999999999999999999999997764222 1222322 1234677876443221
Q ss_pred -------cc-CCCCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 62 -------KR-GKINPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 62 -------~~-~~~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
.. .....|..|++|.|+|+++++++|+++|+++...|....+ .+.+|++||||++|||++....
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 00 1113578999999999999999999999998876643222 3568899999999999996654
No 12
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.83 E-value=2.3e-19 Score=126.83 Aligned_cols=124 Identities=21% Similarity=0.308 Sum_probs=86.3
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeec----CC------------C-----cceEEEE-eCCeeEEEeecCCCCc
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRP----SF------------N-----FEGAWLF-NHGIGIHLLESDKAPE 61 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~----~~------------~-----~~~~~~~-~~~~~l~l~~~~~~~~ 61 (172)
++|+||.|.|+|+++|++||+++||+++..+. .. + ....++. .++..+++++......
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 67999999999999999999999999875321 00 0 0112222 2345688887653221
Q ss_pred ccC---CCCCCcceEEEEeCCHHHHHHHHHhCCCeEeece-eec-CC-eeEEEEEEECCCCCEEEEEeecCC
Q 042945 62 KRG---KINPKDNHISFQCSDMKLVMRKLEEMNIEYETAV-VDE-GG-IQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 62 ~~~---~~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~-~~~-~~-~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
... ....|..|+||.|+|+++++++|+++|+++...+ ... .+ .+.+.+|++|||||.|||++..+.
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 111 1246789999999999999999999998754322 111 11 123789999999999999987653
No 13
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.83 E-value=3.2e-19 Score=122.99 Aligned_cols=119 Identities=27% Similarity=0.449 Sum_probs=88.5
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC--C
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS--D 79 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~--d 79 (172)
++++|+|+.|.|+|++++++||+++||+++..+. ....++..++..+.+......+ ......+..|++|.++ |
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~---~~~~~~~~~g~~l~l~~~~~~~--~~~~~~~~~hiaf~v~~~d 75 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKG---RKTAYFDLNGLWIALNEEKDIP--RNEIHQSYTHIAFSIEEED 75 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeec---CeeEEEecCCeEEEeeccCCCC--CccCCCCeeEEEEEecHHH
Confidence 3678999999999999999999999999987652 2234454455555554322111 1122345679999998 9
Q ss_pred HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+++++++|+++|+++...+.... ++.+++|++|||||+||+.+...
T Consensus 76 v~~~~~~l~~~G~~i~~~~~~~~-~~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 76 FDHWYQRLKENDVNILPGRERDE-RDKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred HHHHHHHHHHCCceEcCCccccC-CCceEEEEECCCCCEEEEEeCCH
Confidence 99999999999999876554333 24588999999999999997544
No 14
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.83 E-value=1.5e-19 Score=126.62 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=81.4
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC----cceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCH
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN----FEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDM 80 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl 80 (172)
+|+||+|.|+|++++++||+++||+++..+.... ....|+...+.. .++......... ...++..|+||.|+|+
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~-~~~~g~~Hiaf~v~di 78 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGE-EYVDHHTLALAQ-GPESGVHHAAFEVHDF 78 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCC-CcccchHHHHhc-CCCCceeEEEEEcCCH
Confidence 5899999999999999999999999987542111 123333322110 000000000001 1145789999999999
Q ss_pred HHHH---HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 81 KLVM---RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 81 ~~~~---~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
+++. ++|+++|+++...+.........++|++||+||.|||+.....
T Consensus 79 e~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~ 128 (153)
T cd07257 79 DAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDL 128 (153)
T ss_pred HHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCcee
Confidence 9986 9999999998866544321123568999999999999976654
No 15
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.83 E-value=4.5e-19 Score=121.05 Aligned_cols=116 Identities=19% Similarity=0.354 Sum_probs=83.5
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC----cceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN----FEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS 78 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~----~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~ 78 (172)
+.+|+||.|.|+|++++++||+++||++...+.... ....+...++..+.+...... ...+..|++|.|+
T Consensus 2 i~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~------~~~~~~Hiaf~v~ 75 (131)
T cd08364 2 IEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL------QERTYNHIAFKIS 75 (131)
T ss_pred cccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC------CCCCceEEEEEcC
Confidence 678999999999999999999999999886653111 011233333445555532211 1235689999998
Q ss_pred --CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 79 --DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 79 --dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+++++.++|.++|+++..+.....+ +.+++||+|||||.|||.+..
T Consensus 76 ~~~ld~~~~~l~~~gv~~~~~~~~~~~-~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 76 DSDVDEYTERIKALGVEMKPPRPRVQG-EGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred HHHHHHHHHHHHHCCCEEecCCccccC-CceEEEEECCCCCEEEEecCC
Confidence 8999999999999987754322222 247999999999999999643
No 16
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.83 E-value=4.9e-19 Score=124.53 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=85.4
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC---CeeEEEeecCCCCcccCCCCCCcceEEEEeCC--
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH---GIGIHLLESDKAPEKRGKINPKDNHISFQCSD-- 79 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d-- 79 (172)
+|+||+|.|+|+++|.+||+++||++...+.. ....+...+ +..+.+....... .......+..|++|.|+|
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~l~Hiaf~v~d~~ 77 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG--DRVRLEEGGGGPGAVVDVLEEPDQP-RGRPGAGTVHHVAFRVPDDE 77 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC--CEEEEEecCCCCCCEEEEEeCCCCC-CCcccCCceEEEEEECCCHH
Confidence 58999999999999999999999999876632 122333332 4556666643211 111223466899999997
Q ss_pred -HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 80 -MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 80 -l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
+++++++|+++|+++.. +... ++ .+++|++|||||.|||+++.+.
T Consensus 78 dvd~~~~~L~~~Gv~~~~-~~~~-~~-~~s~yf~DPdG~~iEl~~~~~~ 123 (157)
T cd08347 78 ELEAWKERLEALGLPVSG-IVDR-FY-FKSLYFREPGGILFEIATDGPG 123 (157)
T ss_pred HHHHHHHHHHHCCCCccc-cccc-cc-EEEEEEECCCCcEEEEEECCCC
Confidence 99999999999998653 3322 22 4789999999999999997654
No 17
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=4.5e-19 Score=119.04 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=80.6
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecC--CCCcccCCCCCCcceEEEEeCCHH
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESD--KAPEKRGKINPKDNHISFQCSDMK 81 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--~~~~~~~~~~~g~~~v~~~v~dl~ 81 (172)
+++.|+.|.|+|+++|++||+++||+++.... +. .. ....+..+.+.... ...........+..|++|.|+|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~--~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd 76 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF--GE-NV-TFEGGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFD 76 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeecc--Cc-eE-EEeccceeccchhhhccCCcccccccCCceEEEEEehhhH
Confidence 36899999999999999999999999986432 11 11 11222222211100 000011112345579999999999
Q ss_pred HHHHHHHhCCC-eEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 82 LVMRKLEEMNI-EYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 82 ~~~~~l~~~G~-~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++++|+++|+ ++..+|.. .+||.+.+|++|||||+|||.+.
T Consensus 77 ~~~~~l~~~g~~~~~~~~~~-~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 77 AFLDKLKRYDNIEYVHPIKE-HPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHHHHHhcCCcEEecCccc-CCCccEEEEEECCCCCEEEEecc
Confidence 99999999985 67776654 44677899999999999999974
No 18
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.82 E-value=1e-18 Score=115.98 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=82.6
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC-eeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHH
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG-IGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVM 84 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~ 84 (172)
+.|+.|.|+|++++++||+++||+++...........++..++ ....++...... ...+...|++|.++|+++++
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~v~di~~~~ 76 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGDGGGDYAVFSTGGGAVGGLMKAPEPA----AGSPPGWLVYFAVDDVDAAA 76 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccCCCCceEEEEeCCccEEEEecCCCCC----CCCCCeEEEEEEeCCHHHHH
Confidence 4799999999999999999999999876532111222232332 234444433221 12345679999999999999
Q ss_pred HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 85 RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 85 ~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++|+++|+++..++....+ +.+.++++|||||.|++++
T Consensus 77 ~~l~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 77 ARVEAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999999887765443 4488999999999999974
No 19
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.82 E-value=3.4e-19 Score=120.46 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=83.8
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC---CcceEEEEeCCeeEEEeecCCCCccc----CCCCCCcceEEEEe
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF---NFEGAWLFNHGIGIHLLESDKAPEKR----GKINPKDNHISFQC 77 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~l~l~~~~~~~~~~----~~~~~g~~~v~~~v 77 (172)
+|+|+.|.|+|++++++||+++||++....... +....++..++..+++.......... .....+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 589999999999999999999999998654211 12223333445667776542221110 11234667999999
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEE--ECCCCCEEEEEe
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFF--HDPDGYMIEICN 123 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~--~DPdG~~iei~~ 123 (172)
+|+++++++|.++|+++..++.....+|.+.+|+ +||||++||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 9999999999999999886422223345455666 799999999975
No 20
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.81 E-value=1.4e-18 Score=121.26 Aligned_cols=123 Identities=21% Similarity=0.255 Sum_probs=85.1
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCc---ceEEEEeC-C---eeEEEeecCCCCcccCCCCCCcceEE
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNF---EGAWLFNH-G---IGIHLLESDKAPEKRGKINPKDNHIS 74 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~---~~~~~~~~-~---~~l~l~~~~~~~~~~~~~~~g~~~v~ 74 (172)
+.++|+||.|.|+|++++.+||+++|||++..+.+... ...++... + ..+++...... .+.....+..|++
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~g~~hi~ 91 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGT--EKYDLGNGFGHIA 91 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCC--CcccCCCceeEEE
Confidence 35789999999999999999999999999876532211 12222211 1 11222221111 1112234678999
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
|.|+|+++++++|.++|+++..++....+.+.+.+|++||+||.|||++...
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 9999999999999999999887664333223467899999999999998654
No 21
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=1.2e-18 Score=115.91 Aligned_cols=114 Identities=17% Similarity=0.267 Sum_probs=81.7
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEe--C---CeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFN--H---GIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKL 82 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~ 82 (172)
||.|.|.|++++++||+++||+++..+........++.. . +..+++..............++..|++|.|+|+++
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~ 80 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDIDA 80 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHHHH
Confidence 899999999999999999999999876431122233322 1 23344443332211112234566799999999999
Q ss_pred HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 83 VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++++|+++|+++..++... ++ .+.+|++||+||.|||++
T Consensus 81 ~~~~l~~~g~~~~~~~~~~-~~-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 81 TYEELKARGVEFSEEPREM-PY-GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHhCCCEEeeccccC-CC-ceEEEEECCCCCEEEEeC
Confidence 9999999999999877332 23 478999999999999974
No 22
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.81 E-value=1e-18 Score=119.27 Aligned_cols=115 Identities=23% Similarity=0.385 Sum_probs=84.5
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC--CHHHH
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS--DMKLV 83 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~--dl~~~ 83 (172)
|+||.|.|+|++++++||+++||+++..+. ....++..++..+.+......+ ......+..|++|.++ |++++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~hiaf~v~~~dld~~ 75 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---EKTAYFTIGGTWLALNEEPDIP--RNEIRQSYTHIAFTIEDSEFDAF 75 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---CccceEeeCceEEEEEccCCCC--cCCcCccceEEEEEecHHHHHHH
Confidence 689999999999999999999999987542 1223444455666554433211 1222346789999998 59999
Q ss_pred HHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 84 MRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 84 ~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+++|.++|+++..++.... ++.+.+|++|||||+||+.+...
T Consensus 76 ~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 76 YTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEecCcH
Confidence 9999999999875443222 24588999999999999998644
No 23
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.81 E-value=1.9e-18 Score=115.65 Aligned_cols=114 Identities=30% Similarity=0.411 Sum_probs=82.6
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC---cceEEEEeCC----eeEEEeecCCCCcccCCCCCCcceEEEEeC
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN---FEGAWLFNHG----IGIHLLESDKAPEKRGKINPKDNHISFQCS 78 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~ 78 (172)
|.|+.|.|+|++++.+||+++||++........ ....++...+ ..+++........ ......+..|++|.|+
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~v~ 79 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE-PYDNGNGFGHLAFAVD 79 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC-CcCCCCCeEEEEEEeC
Confidence 579999999999999999999999987653221 1223343322 3355544322211 1122346689999999
Q ss_pred CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 79 DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 79 dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
|+++++++++++|+++..++.... +.+.+|++||+||++|++
T Consensus 80 did~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 80 DVYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred CHHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 999999999999999998776542 347799999999999985
No 24
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.81 E-value=1.9e-18 Score=116.26 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=80.6
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC--CeeEEEeecCCCCcccCCCCCCcceEEEEeC--
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH--GIGIHLLESDKAPEKRGKINPKDNHISFQCS-- 78 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~-- 78 (172)
+++|+|+.|.|.|+++|++||+++||++...... ....++... +....+.-.. . ...+..|++|.|+
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~-~------~~~~~~hiaf~v~~~ 72 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QGRVYLKAWDEFDHHSIVLRE-A------DTAGLDFMGFKVLDD 72 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--CceEEEEccCCCcccEEEecc-C------CCCCeeEEEEEeCCH
Confidence 5789999999999999999999999999876531 122333221 1111111111 1 1335689999997
Q ss_pred -CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 79 -DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 79 -dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+++++.++|+++|+++...+........+.+|++|||||.||+....
T Consensus 73 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 73 ADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred HHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 89999999999999987654322221236899999999999998754
No 25
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.81 E-value=1.3e-18 Score=121.95 Aligned_cols=118 Identities=16% Similarity=0.265 Sum_probs=82.6
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC------CcceEEEEeCCe--eEEEeecCCCCcccCCCCCCcceEE
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF------NFEGAWLFNHGI--GIHLLESDKAPEKRGKINPKDNHIS 74 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~g~~~v~ 74 (172)
.++|+||.|.|.|++++.+||+++||+++..+... .....++..++. .+.+... ....+..|++
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~--------~~~~g~~Hia 78 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG--------PGPKRIHHLM 78 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC--------CCCceeEEEE
Confidence 37899999999999999999999999998654211 111223322211 1222111 1134678999
Q ss_pred EEeCCHH---HHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCCC
Q 042945 75 FQCSDMK---LVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNLP 128 (172)
Q Consensus 75 ~~v~dl~---~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~~ 128 (172)
|.|+|++ +++++|+++|+++..++......+.+++|++||+|+.|||.......
T Consensus 79 f~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~~ 135 (154)
T cd07237 79 LEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRTV 135 (154)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceEc
Confidence 9998654 68999999999998766443323458899999999999998755443
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.81 E-value=3.9e-18 Score=116.81 Aligned_cols=115 Identities=23% Similarity=0.242 Sum_probs=82.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC-e---eEEEeecCCCCcccCCCCCCcceEEEEeCC
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG-I---GIHLLESDKAPEKRGKINPKDNHISFQCSD 79 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~---~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d 79 (172)
++|+||.|.|.|+++|++||+++||++...+.. ....|+...+ . .+.+..... ...+..|++|.|+|
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~~~~~~~~~~~~~~~~i~l~~~~~-------~~~g~~hiaf~v~d 72 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--GRGAFLRAAGGGDHHNLFLIKTPA-------PMAGFHHAAFEVGD 72 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--CcEEEEECCCCCCCcEEEEecCCC-------CCCcceEEEEEeCC
Confidence 579999999999999999999999999876532 2244543321 1 233322211 13578899999998
Q ss_pred HHHHH---HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 80 MKLVM---RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 80 l~~~~---~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
++++. ++|.++|+++...+......+.+++|++||+|+.|||......
T Consensus 73 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~ 123 (134)
T cd08360 73 IDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDY 123 (134)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccccc
Confidence 88776 5999999998765543322234679999999999999975444
No 27
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.81 E-value=1.9e-18 Score=115.63 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=84.0
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEe---CC
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQC---SD 79 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v---~d 79 (172)
+.+|+|+.|.|+|++++++||+++||++...... ...++...+...+++.....+ .++..|++|.| ++
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~ 71 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD---GIVYLRATGSEHHILRLRRSD------RNRLDVVSFSVASRAD 71 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC---CEEEEECCCCccEEEEeccCC------CCCCceEEEEeCCHHH
Confidence 4689999999999999999999999999875532 234444333323333222111 23567999999 57
Q ss_pred HHHHHHHHHhCCCeEeeceeec-CCeeEEEEEEECCCCCEEEEEeecC
Q 042945 80 MKLVMRKLEEMNIEYETAVVDE-GGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~-~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+++++++|+++|+++..++... .+++.+.++++||+||.||+++..+
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~~ 119 (120)
T cd08362 72 VDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADVE 119 (120)
T ss_pred HHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEeccc
Confidence 9999999999999988765322 2345678999999999999998643
No 28
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=3.5e-18 Score=115.10 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=80.4
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCC-----C-C--cccCCCCCCcceEEEEe
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDK-----A-P--EKRGKINPKDNHISFQC 77 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-----~-~--~~~~~~~~g~~~v~~~v 77 (172)
+.|+.|.|+|++++.+||+++||++.......+ .-..+..++..+.+..... . . .......++..+++|.|
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG-DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVT 79 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC-cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEEc
Confidence 579999999999999999999999986542211 1111222233333322110 0 0 00111233457999999
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
+|++++++++.++|+++..++... +||.+.++++|||||.||+++
T Consensus 80 ~di~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 80 DDVAAAFARAVEAGAVLVSEPKEK-PWGQTVAYVRDINGFLIELCS 124 (125)
T ss_pred CCHHHHHHHHHHcCCEeccCCccC-CCCcEEEEEECCCCCEEEEec
Confidence 999999999999999998776543 466788999999999999986
No 29
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=4.8e-18 Score=115.02 Aligned_cols=117 Identities=26% Similarity=0.454 Sum_probs=87.6
Q ss_pred eeceEEEEeCCHHHHHHHHHHhh---CCEEeeecCCCcceEEEEe-CCeeEEEeecCCCCcc-cCCCCCCcceEEEEeC-
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVL---GFVMIKRPSFNFEGAWLFN-HGIGIHLLESDKAPEK-RGKINPKDNHISFQCS- 78 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~-~~~~~~g~~~v~~~v~- 78 (172)
+|+||.|.|.|++++++||+++| |++...+.+ ....|... .+..+.+......... ......+..|++|.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~~v~~ 78 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DGRSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAFRAPS 78 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cCceEEecCCceEEEEEecccCCCcccccCCcCeeEEEEEcCC
Confidence 58999999999999999999999 999887631 23344443 5566777665432211 1123456689999997
Q ss_pred --CHHHHHHHHHhCCCeEeeceeec--CCeeEEEEEEECCCCCEEEEEe
Q 042945 79 --DMKLVMRKLEEMNIEYETAVVDE--GGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 79 --dl~~~~~~l~~~G~~i~~~~~~~--~~~g~~~~~~~DPdG~~iei~~ 123 (172)
|+++++++|+++|+++...+... ...+.+.+|++|||||++||+.
T Consensus 79 ~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 79 REAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred HHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 58999999999999998876542 1224588999999999999986
No 30
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=6.8e-18 Score=113.73 Aligned_cols=116 Identities=27% Similarity=0.356 Sum_probs=84.2
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC--eeEEEeecCCCCcccCCCCCCcceEEEEeC---
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG--IGIHLLESDKAPEKRGKINPKDNHISFQCS--- 78 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~--- 78 (172)
++|+||.|.|.|++++++||+++||+++.... ....++...+ ..+.+....... .......+..|++|.|+
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~~~~~l~~~~~~~~l~l~~~~~~~-~~~~~~~~~~hi~f~v~~~~ 76 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---DSTAVLGTGGKRPLLVLEEDPDAP-PAPPGATGLYHFAILLPSRA 76 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---CCEEEEecCCCeEEEEEEeCCCCC-cccCCCCcEEEEEEECCCHH
Confidence 47999999999999999999999999998763 2344444333 234444333221 11223456789999997
Q ss_pred CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 79 DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 79 dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
++++++++|.++|+++..+. . .++ .+.+|++|||||++||.+..+
T Consensus 77 ~v~~~~~~l~~~g~~~~~~~-~-~~~-~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 77 DLAAALRRLIELGIPLVGAS-D-HLV-SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred HHHHHHHHHHHcCCceeccc-c-ccc-eeEEEEECCCCCEEEEEEecC
Confidence 59999999999999876532 2 233 367999999999999998655
No 31
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.80 E-value=4e-18 Score=114.99 Aligned_cols=111 Identities=23% Similarity=0.379 Sum_probs=81.7
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEE-eCCeeEEEeecCCCCcccCCCCCCcceEEEEeC--C
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLF-NHGIGIHLLESDKAPEKRGKINPKDNHISFQCS--D 79 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~--d 79 (172)
..+++|+.|.|+|+++|++||+++||++..... + ...++. ..+..+.+.... ...+..|++|.++ |
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~--~-~~~~~~~~~~~~l~~~~~~--------~~~~~~h~a~~v~~~d 70 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPF--G-PFAVVKLDNGVSLDFAQPD--------GEIPPQHYAFLVSEEE 70 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc--C-CEEEEEcCCCcEEEEecCC--------CCCCcceEEEEeCHHH
Confidence 368999999999999999999999999987532 1 122222 233344443321 1124579999886 7
Q ss_pred HHHHHHHHHhCCCeEeeceeec------CCeeEEEEEEECCCCCEEEEEee
Q 042945 80 MKLVMRKLEEMNIEYETAVVDE------GGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~------~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++++++|+++|+++...|... ..+|.+.+|++|||||.||+++.
T Consensus 71 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 71 FDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 9999999999999987665432 13456899999999999999985
No 32
>PLN02300 lactoylglutathione lyase
Probab=99.80 E-value=4.1e-18 Score=130.70 Aligned_cols=126 Identities=17% Similarity=0.262 Sum_probs=90.0
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC---cceEEEEeCC----eeEEEeecCCCCcccCCCCCCcceE
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN---FEGAWLFNHG----IGIHLLESDKAPEKRGKINPKDNHI 73 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~g~~~v 73 (172)
|.+.+|.|+.|.|+|++++++||+++|||+...+.+.. ....|+..+. ..+++...... .......+..|+
T Consensus 20 ~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~~~~~~~g~~hi 97 (286)
T PLN02300 20 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV--DKYDIGTGFGHF 97 (286)
T ss_pred cccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC--CccccCCCccEE
Confidence 46789999999999999999999999999987653211 1233442221 12333321111 111234577899
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCCC
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNLP 128 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~~ 128 (172)
+|.|+|+++++++|.++|+++...+....+.+.+.+|++|||||.|||++..+.+
T Consensus 98 a~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~ 152 (286)
T PLN02300 98 GIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTP 152 (286)
T ss_pred EEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCC
Confidence 9999999999999999999988766544322346789999999999999976553
No 33
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.80 E-value=4.9e-18 Score=112.92 Aligned_cols=110 Identities=14% Similarity=0.210 Sum_probs=81.0
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHH
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKL 82 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~ 82 (172)
+++|+|+.|.|.|+++|++||++ |||+...+.+ ...|+...+....++..... ..++..|++|.|+|.++
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~af~v~~~~~ 70 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---DELYYRGYGTDPFVYVARKG------EKARFVGAAFEAASRAD 70 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---CeEEEecCCCccEEEEcccC------CcCcccEEEEEECCHHH
Confidence 57899999999999999999999 9999876532 34454433323233322111 12466899999999999
Q ss_pred HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 83 VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+.+.+++.|+.+...+. ..++.+.+||+|||||.||++..
T Consensus 71 ~~~~~~~~g~~~~~~~~--~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 71 LEKAAALPGASVIDDLE--APGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHcCCCeeecCCC--CCCCceEEEEECCCCCEEEEEec
Confidence 99999999998765432 22345789999999999999875
No 34
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.79 E-value=3.4e-18 Score=114.92 Aligned_cols=114 Identities=24% Similarity=0.318 Sum_probs=81.5
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC-eeEEEeecCCCCcccCCCCCCcceEEEEeC-
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG-IGIHLLESDKAPEKRGKINPKDNHISFQCS- 78 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~- 78 (172)
|.+++|+|+.|.|+|++++.+||+++||++...+.+ ...++...+ ...+.+..... ...+..|++|.++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~---~~~~l~~~~~~~~~~~~l~~~------~~~~~~h~af~v~~ 72 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG---QSVYLRAWGDYEHHSLKLTES------PEAGLGHIAWRASS 72 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC---CeEEEEeccCCCccEEEEeeC------CCCceEEEEEEcCC
Confidence 678999999999999999999999999999887632 233443222 11111111111 1346789999997
Q ss_pred --CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 79 --DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 79 --dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+++++++++.++|+++...+.. .+. ...+|++|||||.+|+....
T Consensus 73 ~~~v~~~~~~l~~~G~~~~~~~~~-~~~-~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 73 PEALERRVAALEASGLGIGWIEGD-PGH-GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred HHHHHHHHHHHHHcCCccccccCC-CCC-cceEEEECCCCCEEEEEEec
Confidence 6889999999999987543322 222 36799999999999999753
No 35
>PRK06724 hypothetical protein; Provisional
Probab=99.79 E-value=6.8e-18 Score=114.83 Aligned_cols=111 Identities=21% Similarity=0.320 Sum_probs=78.7
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhh---CCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEe--
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVL---GFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQC-- 77 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v-- 77 (172)
+.+|+||.|.|+|+++|++||+++| |++.... ..+ ..++..+.+...... .....+..|+||.|
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~------~~~-~~g~~~l~l~~~~~~----~~~~~g~~h~af~v~~ 73 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE------VAY-STGESEIYFKEVDEE----IVRTLGPRHICYQAIN 73 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee------Eee-eCCCeeEEEecCCcc----ccCCCCceeEEEecCC
Confidence 4679999999999999999999977 5554311 111 112223333322111 11234678999998
Q ss_pred -CCHHHHHHHHHhCCCeEeeceeecC--CeeEEEEEEECCCCCEEEEEee
Q 042945 78 -SDMKLVMRKLEEMNIEYETAVVDEG--GIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 78 -~dl~~~~~~l~~~G~~i~~~~~~~~--~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++++++++|.++|+++..+|.... ++|.+++||+|||||.||+...
T Consensus 74 ~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 74 RKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred hHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 6899999999999999887665432 3566889999999999999865
No 36
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.79 E-value=5.8e-18 Score=113.81 Aligned_cols=115 Identities=22% Similarity=0.387 Sum_probs=81.7
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecC-CCc-ce--EEEEe----CCeeEEEeecCCCCcccCCCCCCcceEEEE
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPS-FNF-EG--AWLFN----HGIGIHLLESDKAPEKRGKINPKDNHISFQ 76 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~-~~~-~~--~~~~~----~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~ 76 (172)
+|+||.|.|.|++++++||+++||++...+.. .+. .. .++.. .+..++++..............+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 57999999999999999999999999876532 111 11 22221 234566665543221111223456899999
Q ss_pred eC---CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 77 CS---DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 77 v~---dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
|+ ++++++++++++|+++..++.. . +.+.+|++||+||+|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH-F--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee-c--ceEEEEEECCCCCEEEeC
Confidence 98 5799999999999998764433 2 458899999999999984
No 37
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.79 E-value=4.9e-19 Score=119.08 Aligned_cols=117 Identities=25% Similarity=0.381 Sum_probs=80.8
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecC---CC--cceEEEEeCCeeEEEeecCCCCcccCCC---CCCcceEEEE
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPS---FN--FEGAWLFNHGIGIHLLESDKAPEKRGKI---NPKDNHISFQ 76 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~---~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~---~~g~~~v~~~ 76 (172)
+|+||+|.|+|++++++||+++||+++..... .. ....+...+...+.+............. ..+..|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999988643 11 1122333344445555443222111111 0134566666
Q ss_pred e---CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEE
Q 042945 77 C---SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEI 121 (172)
Q Consensus 77 v---~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei 121 (172)
+ +|+++++++|++.|+++..++......+...+|++||+||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6 48889999999999999988765544344667899999999997
No 38
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.79 E-value=6.4e-18 Score=119.31 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=88.3
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC-Cc--ceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCC-
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF-NF--EGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSD- 79 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~--~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d- 79 (172)
++|+||+|.|+|++++++||+++||+++...... .. ...|+...+. .+.+... ....++..|++|.|+|
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~-~~~i~l~------~~~~~~~~Hiaf~v~~~ 74 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG-VHDTALT------GGNGPRLHHVAFWVPEP 74 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC-cceEEEe------cCCCCceeEEEEEcCCH
Confidence 6899999999999999999999999998754311 11 1223322211 1111111 0113467899999985
Q ss_pred --HHHHHHHHHhCCCeE--eeceeecCCeeEEEEEEECCCCCEEEEEeecCC---CCCCCCCCCCCCcccccccccccch
Q 042945 80 --MKLVMRKLEEMNIEY--ETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL---PVLPLSSCPLKLPSKRSSEKAACSG 152 (172)
Q Consensus 80 --l~~~~~~l~~~G~~i--~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (172)
+++++++|+++|+.+ ...|......+.+++|++|||||+||+++.... +.-.+......-..+..-||+..++
T Consensus 75 ~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 154 (161)
T cd07256 75 HNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDYYTGDPDNPPIRWDVHDPQRQTWWGPPAPP 154 (161)
T ss_pred HHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCceeeCCCCCCcccCccccccccccccCCCC
Confidence 788889999999863 333332222345679999999999999975542 1111222222213445677777653
No 39
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=1.5e-17 Score=111.76 Aligned_cols=115 Identities=10% Similarity=0.019 Sum_probs=82.2
Q ss_pred EEEEeCCHHHHHHHHHHhhCCEEeeec-CCCcce--EEEEeCCeeEEEeecCCCCcc--cCCCCCCcceEEEEeCCHHHH
Q 042945 9 VSFVSKSVEKSVMFYEQVLGFVMIKRP-SFNFEG--AWLFNHGIGIHLLESDKAPEK--RGKINPKDNHISFQCSDMKLV 83 (172)
Q Consensus 9 v~l~v~D~~~a~~FY~~~LG~~~~~~~-~~~~~~--~~~~~~~~~l~l~~~~~~~~~--~~~~~~g~~~v~~~v~dl~~~ 83 (172)
-.|.|+|++++++||+++||++..... ...... ..+..++..+.+......... .....++..+++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 478999999999999999999998753 111111 123333444545433221111 012334567999999999999
Q ss_pred HHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 84 MRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 84 ~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
++++.++|+++..++... ++|.+.++++|||||+|+|.+|
T Consensus 83 ~~~l~~~G~~v~~~~~~~-~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDT-PYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCcccc-CCCcEEEEEECCCCCEEEEecC
Confidence 999999999999877554 3567889999999999999864
No 40
>PRK10291 glyoxalase I; Provisional
Probab=99.78 E-value=6.9e-18 Score=114.73 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=78.3
Q ss_pred EEEeCCHHHHHHHHHHhhCCEEeeecCCC---cceEEEEeCC----eeEEEeecCCCCcccCCCCCCcceEEEEeCCHHH
Q 042945 10 SFVSKSVEKSVMFYEQVLGFVMIKRPSFN---FEGAWLFNHG----IGIHLLESDKAPEKRGKINPKDNHISFQCSDMKL 82 (172)
Q Consensus 10 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~ 82 (172)
.|.|+|+++|++||+++||++...+.... ....++..++ ..+++.... +..+...+.+..|+||.|+|+++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~g~~~~hlaf~V~d~~~ 78 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW--GVDKYELGTAYGHIALSVDNAAE 78 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecC--CCCCCcCCCCeeEEEEEeCCHHH
Confidence 37899999999999999999987653221 1233332221 113333211 11112234467899999999999
Q ss_pred HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 83 VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
++++|+++|+++..++....+.+.+.+|++|||||.|||++...
T Consensus 79 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 79 ACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 99999999999886554332222456889999999999998653
No 41
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.78 E-value=7.2e-18 Score=113.28 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=80.5
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC---CH
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS---DM 80 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~---dl 80 (172)
++|.||.|.|+|+++|++||+++|||+...+.. ....|+...+..+.+.-.... ..+..|++|.++ |+
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~f~v~~~~dl 71 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--DGALYLRMDDRAWRIAVHPGE-------ADDLAYAGWEVADEAAL 71 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--CCeEEEEccCCceEEEEEeCC-------CCceeEEEEEECCHHHH
Confidence 478999999999999999999999999876532 234444433333322221111 235679999997 59
Q ss_pred HHHHHHHHhCCCeEeeceeec--CCeeEEEEEEECCCCCEEEEEeec
Q 042945 81 KLVMRKLEEMNIEYETAVVDE--GGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~--~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
++++++|.++|+++...+... ...+.+.+|++|||||.||++...
T Consensus 72 ~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 72 DALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 999999999999988644211 111237899999999999999754
No 42
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.78 E-value=6.2e-18 Score=114.35 Aligned_cols=110 Identities=18% Similarity=0.330 Sum_probs=80.3
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCee--EEEeecCCCCcccCCCCCCcceEEEEeCC
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIG--IHLLESDKAPEKRGKINPKDNHISFQCSD 79 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--l~l~~~~~~~~~~~~~~~g~~~v~~~v~d 79 (172)
++.+|.||+|.|+|+++|.+||+++|||++..+. ....|+..++.. +.+.... ++..|++|+|++
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~~~~~l~~~~~~~~i~l~~~~----------~~~~~iaf~v~~ 69 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERT---AKATYFRSDARDHTLVYIEGD----------PAEQASGFELRD 69 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCC---CCeEEEEcCCccEEEEEEeCC----------CceEEEEEEECC
Confidence 5689999999999999999999999999986542 124454433222 2222111 245789999975
Q ss_pred ---HHHHHHHHHhCCCeEeeceeecC--CeeEEEEEEECCCCCEEEEEee
Q 042945 80 ---MKLVMRKLEEMNIEYETAVVDEG--GIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 80 ---l~~~~~~l~~~G~~i~~~~~~~~--~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++++++|.++|+++...+.... ..+.+++||+|||||.||+...
T Consensus 70 ~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 70 DDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred HHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 99999999999999876543211 1234678999999999999864
No 43
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.78 E-value=5.6e-18 Score=114.29 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=84.8
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC----cceEEEEeCCeeEEEeecCCCCccc----CCCCCCcceEEEEe
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN----FEGAWLFNHGIGIHLLESDKAPEKR----GKINPKDNHISFQC 77 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~----~~~~~~~~~~~~l~l~~~~~~~~~~----~~~~~g~~~v~~~v 77 (172)
|+||.|.|+|++++.+||+++||++........ ....++..++..+++++........ ....++..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999997654321 1234444456677777654321111 12356778999999
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCC--CCEEEEEe
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPD--GYMIEICN 123 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPd--G~~iei~~ 123 (172)
+|++++++++.+.|+++..++......|...+++.||+ |+.|||++
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 99999999999999999887753333343444444445 99999975
No 44
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.78 E-value=1.5e-17 Score=115.37 Aligned_cols=113 Identities=27% Similarity=0.385 Sum_probs=81.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCee--EEEeecCCCCcccCCCCCCcceEEEEeCCHH
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIG--IHLLESDKAPEKRGKINPKDNHISFQCSDMK 81 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~ 81 (172)
.+|+|+.|.|.|+++|++||+++||++...... ....|+..+... +.+... ..++..|++|.|+|++
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~~~~~l~~~~~~~~~~l~~~---------~~~~~~hiaf~v~d~~ 71 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--DQMAFLRCNSDHHSIAIARG---------PHPSLNHVAFEMPSID 71 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--CeEEEEECCCCcceEEEccC---------CCCceEEEEEECCCHH
Confidence 479999999999999999999999999865421 123444333222 222211 1246789999999888
Q ss_pred HHH---HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 82 LVM---RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 82 ~~~---~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
++. ++|+++|+++...+......+.+.+||+||+||.|||++....
T Consensus 72 ~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 72 EVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred HHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 775 8999999998876544333234668999999999999987554
No 45
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.78 E-value=2.6e-17 Score=112.38 Aligned_cols=116 Identities=26% Similarity=0.361 Sum_probs=82.7
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC---CeeEEEeecCCCCcccCCCCCCcceEEEEeCCHH
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH---GIGIHLLESDKAPEKRGKINPKDNHISFQCSDMK 81 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~ 81 (172)
+|+|+.|.|.|++++++||+++||++.....+. ....++... +..+.+........ .....+..|++|.|+|++
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~f~v~~~~ 77 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL-GGLVFLSRDPDEHHQIALITGRPAAP--PPGPAGLNHIAFEVDSLD 77 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC-CcEEEEEecCCCceEEEEEecCCCCC--CCCCCCceEEEEEeCCHH
Confidence 589999999999999999999999998765421 133444332 23455554432211 122346689999998755
Q ss_pred ---HHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 82 ---LVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 82 ---~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+++++|.+.|+++...+.. + +.+.+|++||+||.|||++..+
T Consensus 78 ~v~~~~~~l~~~G~~~~~~~~~--~-~~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 78 DLRDLYERLRAAGITPVWPVDH--G-NAWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHCCCCccccCCC--C-ceeEEEEECCCCCEEEEEEcCC
Confidence 5889999999988765422 2 2478999999999999997554
No 46
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.78 E-value=2.2e-17 Score=110.41 Aligned_cols=112 Identities=14% Similarity=0.258 Sum_probs=80.2
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC--eeEEEeecCCCCc--ccCCCCCCcceEEEEeCCHHHH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG--IGIHLLESDKAPE--KRGKINPKDNHISFQCSDMKLV 83 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~--~~~~~~~g~~~v~~~v~dl~~~ 83 (172)
+..|.|+|+++|++||+++||++.....+ ....+...+ ..+.+........ ......+...|++|.|+|++++
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~---~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~did~~ 80 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD---WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDVDAE 80 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC---cEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCHHHH
Confidence 57899999999999999999999886521 122222222 2344443322211 1112233446999999999999
Q ss_pred HHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 84 MRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 84 ~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
+++|.++|+++..++... ++|.+.++++||+||+|||++
T Consensus 81 ~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 81 YERLKAEGLPIVLPLRDE-PWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHhcCCCeeeccccC-CCcceEEEEECCCCCEEEEEC
Confidence 999999999988766543 456789999999999999985
No 47
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.77 E-value=1.7e-17 Score=111.45 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=77.7
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC-CeeEEEeecCCC---CcccCCCCCCcceEEEEeC---
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH-GIGIHLLESDKA---PEKRGKINPKDNHISFQCS--- 78 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~---~~~~~~~~~g~~~v~~~v~--- 78 (172)
++||.|.|+|+++|++||+. |||+....... .....+... +..+.+...... ........++..+++|.++
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~-~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD-EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCETPA 78 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC-CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCCHH
Confidence 57999999999999999975 99997654321 112222222 344443322110 0001112334568888875
Q ss_pred CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 79 DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 79 dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
|+++++++|+++|+++..+|.. .+||.+.++++|||||+|||+
T Consensus 79 dvd~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 79 EVDALYAELVGAGYPGHKEPWD-APWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHHCCCCcCCCCcc-CCCCCEEEEEECCCCCEEEEe
Confidence 8999999999999998876654 346778899999999999997
No 48
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.77 E-value=2e-17 Score=110.00 Aligned_cols=111 Identities=22% Similarity=0.329 Sum_probs=82.8
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC-CeeEEEeecCCCCcccCCCCCCcceEEEEeC---C
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH-GIGIHLLESDKAPEKRGKINPKDNHISFQCS---D 79 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~---d 79 (172)
++|+|+.|.|.|++++++||+++||+++.... ....|+... +..+.+.-.... ..+..|++|.|+ +
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~h~~~~v~~~~~ 70 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRD---AGSVYLRCSEDDHHSLVLTEGD-------EPGVDALGFEVASEED 70 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeec---CCeEEEecCCCCcEEEEEEeCC-------CCCceeEEEEcCCHHH
Confidence 47999999999999999999999999998763 234455443 222222211111 235689999997 7
Q ss_pred HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+++++++++++|+++...+.... ++.+.+|+.||+||.+|++...
T Consensus 71 v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 71 LEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEcc
Confidence 89999999999999887664322 3458899999999999999753
No 49
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.77 E-value=1.5e-17 Score=114.89 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=82.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC-eeEEEeecCCCCcccCCCCCCcceEEEEeCC---HHH
Q 042945 7 NHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG-IGIHLLESDKAPEKRGKINPKDNHISFQCSD---MKL 82 (172)
Q Consensus 7 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d---l~~ 82 (172)
.||.|.|+|++++.+||+++|||++..+.. ....|+...+ ...+.+.... ...++..|++|.|+| +++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~~~~~l~~~~~~~~h~~~~~~------~~~~gl~Hiaf~v~~~~~v~~ 72 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--DRIVFMRCHPNPFHHTFAVGP------ASSSHFHHVNFMVTDIDDIGK 72 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--CEEEEEEcCCCCCcceeeecc------CCCCceEEEEEECCCHHHHHH
Confidence 599999999999999999999999876632 2334443322 2223332111 124578999999975 567
Q ss_pred HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCCC
Q 042945 83 VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNLP 128 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~~ 128 (172)
++++|.++|+++...|......+.+.+|++||+|+.|||+......
T Consensus 73 ~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~ 118 (141)
T cd07258 73 ALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEF 118 (141)
T ss_pred HHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCccee
Confidence 7999999999988766554433457899999999999999866543
No 50
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.77 E-value=1.2e-17 Score=112.08 Aligned_cols=114 Identities=28% Similarity=0.307 Sum_probs=81.0
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC--CeeEEEeecCCCCcccCCCCCCcceEEEEe--
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH--GIGIHLLESDKAPEKRGKINPKDNHISFQC-- 77 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v-- 77 (172)
+++++.|+.|.|.|++++++||+++||+++....+ ...++... +....+.... . ..++..|++|.|
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~------~~~~~~hi~~~v~~ 70 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD---DRIYLRGLEEFIHHSLVLTK-A------PVAGLGHIAFRVRS 70 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC---CeEEEEecCCCceEEEEEee-C------CCCceeEEEEECCC
Confidence 36899999999999999999999999999876531 23333211 1222222111 1 124678999999
Q ss_pred -CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 78 -SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 78 -~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+|+++++++|+++|+++...|........+++|+.|||||.||++...
T Consensus 71 ~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 71 EEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred HHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 489999999999999987654332222237899999999999999743
No 51
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.77 E-value=3.3e-17 Score=108.11 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=80.6
Q ss_pred EEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHHHHHHh
Q 042945 10 SFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVMRKLEE 89 (172)
Q Consensus 10 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~~l~~ 89 (172)
.|.|+|++++++||+++||++...... +....++..++..+++........ ....+..|++|.++|++++++++.+
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP-EPGYAFLSRGGAQLMLSEHDGDEP---VPLGRGGSVYIEVEDVDALYAELKA 78 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC-CCcEEEEEeCCEEEEEeccCCCCC---CCCCCcEEEEEEeCCHHHHHHHHHH
Confidence 689999999999999999999877642 122333444556666655432211 1234567999999999999999999
Q ss_pred CCCe-EeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 90 MNIE-YETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 90 ~G~~-i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
+|++ +..++.. .+++.+.++++||+|+.|||+|
T Consensus 79 ~G~~~~~~~~~~-~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 79 KGADLIVYPPED-QPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred cCCcceecCccC-CCcccEEEEEECCCCCEEEecC
Confidence 9998 5555543 3456688999999999999985
No 52
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.77 E-value=1.8e-17 Score=109.76 Aligned_cols=108 Identities=27% Similarity=0.483 Sum_probs=78.5
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC--CHHHHHH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS--DMKLVMR 85 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~--dl~~~~~ 85 (172)
||.|.|+|++++++||+++||++...+.+ ...++...+..+.+....... . ...+..|++|.|+ +++++++
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~-~~~~~~hiaf~v~~~d~~~~~~ 73 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS---KEAYFELAGLWICLMEEDSLQ---G-PERTYTHIAFQIQSEEFDEYTE 73 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC---ceeEEEecCeEEEeccCCCcC---C-CCCCccEEEEEcCHHHHHHHHH
Confidence 89999999999999999999999876532 233443344555443322111 1 2345679999994 8999999
Q ss_pred HHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 86 KLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 86 ~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++.++|+++...... ..++.+.+|++|||||+|||+.
T Consensus 74 ~l~~~G~~~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 74 RLKALGVEMKPERPR-VQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHcCCccCCCccc-cCCCceEEEEECCCCCEEEEEe
Confidence 999999998754322 2223478999999999999985
No 53
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=6.1e-17 Score=108.39 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=82.5
Q ss_pred EEEEeCCHHHHHHHHHHhhCCEEeeecC-CCcc--eEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHHH
Q 042945 9 VSFVSKSVEKSVMFYEQVLGFVMIKRPS-FNFE--GAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVMR 85 (172)
Q Consensus 9 v~l~v~D~~~a~~FY~~~LG~~~~~~~~-~~~~--~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~ 85 (172)
+.|.|+|++++.+||+++||++...... .... ...+..++..+.+...............+..|++|.|+|++++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 84 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDATFA 84 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEEEEeCCHHHHHH
Confidence 5689999999999999999999876532 1121 122333455565554322111111224456799999999999999
Q ss_pred HHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 86 KLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 86 ~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++.+.|+++..++... ++|.+.++++||+||.|+|++
T Consensus 85 ~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 85 RAVAAGATSVMPPADQ-FWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHCCCeEecCcccc-cccceEEEEECCCCCEEEEec
Confidence 9999999998877533 456789999999999999986
No 54
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.76 E-value=2.9e-17 Score=110.42 Aligned_cols=108 Identities=25% Similarity=0.404 Sum_probs=79.6
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEe--CCHHH
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQC--SDMKL 82 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v--~dl~~ 82 (172)
+|+|+.|.|+|++++.+||+++||++.....+ ...++..++..+.+...... ...++..|++|.+ +|+++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~---~~~~~~~~~~~~~l~~~~~~-----~~~~~~~hi~f~v~~~dl~~ 72 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD---KGAYLEAGDLWLCLSVDANV-----GPAKDYTHYAFSVSEEDFAS 72 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC---CceEEecCCEEEEEecCCCC-----CCCCCeeeEEEEeCHHHHHH
Confidence 58999999999999999999999999876531 23444444444433221111 1234568999988 58999
Q ss_pred HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 83 VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
++++++++|+++..++.. . .+.+||+|||||.|||+..
T Consensus 73 ~~~~l~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 73 LKEKLRQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeC
Confidence 999999999998764432 1 2679999999999999964
No 55
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.76 E-value=7.3e-17 Score=109.97 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=81.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC--cceEEEEeCCee--EEEeecCCCCcccCCCCCCcceEEEEeCCHH-
Q 042945 7 NHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN--FEGAWLFNHGIG--IHLLESDKAPEKRGKINPKDNHISFQCSDMK- 81 (172)
Q Consensus 7 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~~--l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~- 81 (172)
+||.|.|+|++++++||+++||++........ ....|+..++.. +.+.... ..++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~hl~~~v~d~~~ 72 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGP--------ERPGLHHVAFEVESLDD 72 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCC--------CCCCeeEEEEEcCCHHH
Confidence 59999999999999999999999987653211 123344333222 2222211 1446789999999764
Q ss_pred --HHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCCC
Q 042945 82 --LVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNLP 128 (172)
Q Consensus 82 --~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~~ 128 (172)
+++++|+++|+++...+......+.++++++||+||+|||.+..+..
T Consensus 73 ~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 121 (131)
T cd08343 73 ILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYRI 121 (131)
T ss_pred HHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCccc
Confidence 78899999999988766543322347899999999999999865543
No 56
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=2.4e-17 Score=111.24 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=78.2
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEe-CCeeEEEeecCCC----C-cccCCCCCCcceEEEEeC-
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFN-HGIGIHLLESDKA----P-EKRGKINPKDNHISFQCS- 78 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~----~-~~~~~~~~g~~~v~~~v~- 78 (172)
+.++.|.|+|+++|++||+. |||+...+.... ...++.. ++..+++...... . ........+..|++|.|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE-KAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCC-CeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 35799999999999999987 899976432211 2233323 3445555543210 0 000012334569999997
Q ss_pred --CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 79 --DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 79 --dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++++++++++++|+++..+|.... + .+.+|++|||||+|||+.
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~-~-~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHG-F-MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCC-c-eEEEEEECCCCCEEEEEE
Confidence 688999999999999988765443 3 367899999999999985
No 57
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.75 E-value=4.4e-17 Score=106.97 Aligned_cols=103 Identities=26% Similarity=0.415 Sum_probs=74.5
Q ss_pred EEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCe-----eEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHHH
Q 042945 11 FVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGI-----GIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVMR 85 (172)
Q Consensus 11 l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-----~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~ 85 (172)
|.|+|++++++||+++||++.....+ ....+.. +. ...+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP---DYVDFSL-GFRFHDGVIEFLQFPD----PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET---SEEEEEE-TEEEEEEEEEEEEEES----SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC---CeEEEEe-ccchhhhhHHHccCCc----cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999998532 1222222 21 122332221 11224467899999999999999
Q ss_pred HHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 86 KLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 86 ~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
++++.|+++..+|.... +|.+.+++.|||||+|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDP-WGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEET-TSEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcC-CCeEEEEEECCCCCEEEeC
Confidence 99999999988776643 4668999999999999986
No 58
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.75 E-value=7.2e-17 Score=108.31 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=78.0
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHHHHH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVMRKL 87 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~~l 87 (172)
...|.|+|+++|++||++ |||+...+.+. ...++..++..+++....... ......|++|.|+|+++++++|
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~--~~~~~~~~~~~l~l~~~~~~~-----~~~~~~~~~~~v~dvd~~~~~l 76 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA--GYMILRRGDLELHFFAHPDLD-----PATSPFGCCLRLPDVAALHAEF 76 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC--CEEEEEcCCEEEEEEecCcCC-----CCCCcceEEEEeCCHHHHHHHH
Confidence 367999999999999999 99998765421 222333455567776543111 1123468999999999999999
Q ss_pred HhCCCeEe-------eceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 88 EEMNIEYE-------TAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 88 ~~~G~~i~-------~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++|+++. .++. ..++|.+.++++|||||+|||.+.
T Consensus 77 ~~~G~~~~~~~~~~~~~~~-~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 77 RAAGLPETGSGIPRITPPE-DQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHhCccccccCCCcccCCc-CCCCceeEEEEECCCCCEEEeecC
Confidence 99999853 2222 223577899999999999999873
No 59
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=6.8e-17 Score=108.68 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=74.6
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEE--eecCCCC---cccCCCCCCcceEE--EEeCCH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHL--LESDKAP---EKRGKINPKDNHIS--FQCSDM 80 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l--~~~~~~~---~~~~~~~~g~~~v~--~~v~dl 80 (172)
||.|.|+|+++|++||+++||+++....+ ....+...+..+.+ ....... ........+..|++ +.++|+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~dv 78 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE---TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEEF 78 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC---CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHHH
Confidence 89999999999999999999999865421 11111112333322 2211110 00011122345665 566899
Q ss_pred HHHHHHHHhCCCeEeeceeec---CCeeEEEEEEECCCCCEEEEEee
Q 042945 81 KLVMRKLEEMNIEYETAVVDE---GGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~---~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
++++++|+++|+++..+|... ..++.+.+|++|||||.|||..+
T Consensus 79 ~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 79 DALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 999999999999998766432 12345889999999999999863
No 60
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=1e-16 Score=107.37 Aligned_cols=114 Identities=20% Similarity=0.337 Sum_probs=81.4
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC-eeEEEeecCCCCc----ccCCCCCCcceEEEEe--C
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG-IGIHLLESDKAPE----KRGKINPKDNHISFQC--S 78 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~~~~----~~~~~~~g~~~v~~~v--~ 78 (172)
|.++.|.|.|++++++||+++|||+...+. +....++..++ ..+.++....... .......+..|++|.+ +
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 78 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE--DRRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPAE 78 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC--CCceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCHH
Confidence 468999999999999999999999988642 12233343333 4455554332110 0111234667999988 5
Q ss_pred CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 79 DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 79 dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
|++++++++.++|+++...+. ..++.+.+|++||+||+||+++
T Consensus 79 dl~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 79 ELAEWEAHLEAKGVAIESEVQ--WPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred HHHHHHHHHHhcCCceecccc--CCCCeeEEEEECCCCCEEEEec
Confidence 899999999999998876553 2234588999999999999986
No 61
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.75 E-value=5e-17 Score=125.57 Aligned_cols=117 Identities=19% Similarity=0.297 Sum_probs=79.4
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC-Cc---ceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEE
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF-NF---EGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQ 76 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~---~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~ 76 (172)
|.+++|+||.|.|+|++++++||+++|||+...+... .. ...|+.... ..+.+.... ....++..|+||.
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~g~~~Hiaf~ 214 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN-KAHDIAFVG-----DPEPGKLHHVSFF 214 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC-CCcccceec-----CCCCCceEEEEEE
Confidence 4578899999999999999999999999998654211 11 122332221 111111000 0112237899999
Q ss_pred eCC---HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 77 CSD---MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 77 v~d---l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
|+| ++++.++|+++|+++..+|......+.+++|++||+||+||++.
T Consensus 215 v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 215 LDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred cCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 986 55578899999999887665433222478999999999999984
No 62
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=9.8e-17 Score=106.49 Aligned_cols=108 Identities=14% Similarity=0.231 Sum_probs=79.6
Q ss_pred EEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEE-eCCeeEEEeecCCCCcccCCCCCCcceEEEEeCC---HHHHH
Q 042945 9 VSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLF-NHGIGIHLLESDKAPEKRGKINPKDNHISFQCSD---MKLVM 84 (172)
Q Consensus 9 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d---l~~~~ 84 (172)
+.|.|+|+++|++||+++||++...... ....+. .++..+.++........ ....++..|++|.+++ +++++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 77 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP---TFALFVLGSGVKLGLWSRHTVEPA-SDATGGGSELAFMVDDGAAVDALY 77 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC---ceEEEEeCCCcEEEEeeccccCCC-CCCCCCceEEEEEcCCHHHHHHHH
Confidence 6799999999999999999999775421 122222 24455666654432211 1224567899999975 89999
Q ss_pred HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 85 RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 85 ~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
+++.++|+++..++... ++| +.++|+|||||.||++
T Consensus 78 ~~~~~~g~~v~~~~~~~-~~g-~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 78 AEWQAKGVKIIQEPTEM-DFG-YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHCCCeEecCcccc-CCc-cEEEEECCCCCEEEee
Confidence 99999999999877654 455 6799999999999997
No 63
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1e-16 Score=106.68 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=76.2
Q ss_pred EEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHHHHHH
Q 042945 9 VSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVMRKLE 88 (172)
Q Consensus 9 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~~l~ 88 (172)
..|.|+|+++|++||++ |||+...+. ....++..++..+.+....... ..+..+++|.|+|+++++++|+
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~---~~~~~l~~~~~~l~l~~~~~~~------~~~~~~~~~~v~did~~~~~l~ 74 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN---DNLAYFRLGNCAFYLQDYYVKD------WAENSMLHLEVDDLEAYYEHIK 74 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC---CCEEEEEcCCEEEEeecCCCcc------cccCCEEEEEECCHHHHHHHHH
Confidence 56889999999999988 999998763 2345555555566554322111 1234689999999999999999
Q ss_pred hCCCeEee-----ceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 89 EMNIEYET-----AVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 89 ~~G~~i~~-----~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++|+++.. ++.. ..+|.+.++++|||||+|+|.+
T Consensus 75 ~~G~~~~~~~~~~~~~~-~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 75 ALGLPKKFPGVKLPPIT-QPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HcCCcccccceecCccc-cCCCcEEEEEECCCccEEEeeC
Confidence 99987532 2222 2456799999999999999874
No 64
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.74 E-value=1e-16 Score=123.22 Aligned_cols=145 Identities=23% Similarity=0.367 Sum_probs=91.1
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC-c--ceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN-F--EGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS 78 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~--~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~ 78 (172)
.+++|+||+|.|.|++++.+||+++||++...+.... . ...|....+ ..+.+... ....++.+|+||.|+
T Consensus 133 ~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~Hiaf~v~ 205 (294)
T TIGR02295 133 SPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG-GVHDIALT------NGNGPRLHHIAYWVH 205 (294)
T ss_pred cceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC-CcCceEee------cCCCCceeeEEEEcC
Confidence 4578999999999999999999999999987653111 1 122222211 11111111 011357789999999
Q ss_pred C---HHHHHHHHHhCCCe--EeeceeecCCeeEEEEEEECCCCCEEEEEeecCC---CCCCCCCCCCCCccccccccccc
Q 042945 79 D---MKLVMRKLEEMNIE--YETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL---PVLPLSSCPLKLPSKRSSEKAAC 150 (172)
Q Consensus 79 d---l~~~~~~l~~~G~~--i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 150 (172)
| ++++.++|+++|++ +...|......+.+++|++||+||+||+++.... +.-++............-||+..
T Consensus 206 d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~ 285 (294)
T TIGR02295 206 DPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDYLTGDPDWPPIRWTLDDPQRQTLWGHPA 285 (294)
T ss_pred CHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccceecCCcCCccccccccCCcccccCCCC
Confidence 8 55678999999987 5544533221134679999999999999985432 11122222222234556688876
Q ss_pred chH
Q 042945 151 SGE 153 (172)
Q Consensus 151 ~~~ 153 (172)
|..
T Consensus 286 ~~~ 288 (294)
T TIGR02295 286 PPS 288 (294)
T ss_pred CcC
Confidence 643
No 65
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.8e-16 Score=106.61 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=78.3
Q ss_pred eceEEEEeCCHHHHHHHHHHh---hCCEEeeecCCCcceEEEEeC--CeeEEEeecCCCCcccCCCCCCcceEEEEeCC-
Q 042945 6 LNHVSFVSKSVEKSVMFYEQV---LGFVMIKRPSFNFEGAWLFNH--GIGIHLLESDKAPEKRGKINPKDNHISFQCSD- 79 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~---LG~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d- 79 (172)
|+|+.|.|+|+++|++||+++ ||++...+.. + ....+... +..+.+....... . ....+..|++|.|++
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~~~~hi~f~v~~~ 75 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG-P-GAVGYGKGGGGPDFWVTKPFDGE--P-ATAGNGTHVAFAAPSR 75 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC-C-ceeEeccCCCCceEEEeccccCC--C-CCCCCceEEEEECCCH
Confidence 589999999999999999999 5898875531 1 12222222 3445554432111 1 112345799999986
Q ss_pred --HHHHHHHHHhCCCeEeeceeecCC--eeEEEEEEECCCCCEEEEE
Q 042945 80 --MKLVMRKLEEMNIEYETAVVDEGG--IQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 80 --l~~~~~~l~~~G~~i~~~~~~~~~--~g~~~~~~~DPdG~~iei~ 122 (172)
++++++++.++|+.+...|..... .+.+.+|++|||||.|||+
T Consensus 76 ~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 76 EAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred HHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 788999999999998876654432 2346799999999999997
No 66
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.73 E-value=1.6e-16 Score=105.18 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=76.6
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC---CeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH---GIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVM 84 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~ 84 (172)
+..|.|+|++++++||+++||++..... + ...+.... +..+.+...... .....|++|.|+|+++++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~v~d~~~~~ 72 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH--G-WIATFASPQNMTVQVSLATEGGT-------ATVVPDLSIEVDDVDAAL 72 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC--C-ceEEEeecCCCCcEEEEecCCCC-------CCCCCEEEEEeCCHHHHH
Confidence 3578999999999999999999986431 1 22222221 223333322111 123469999999999999
Q ss_pred HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 85 RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 85 ~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
++|+++|+++..++... .+|.+.+|+.||+||.|+|++.
T Consensus 73 ~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 73 ARAVAAGFAIVYGPTDE-PWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHhcCCeEecCCccC-CCceEEEEEECCCCCEEEEEEc
Confidence 99999999988766543 3566889999999999999964
No 67
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=2.7e-16 Score=105.36 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=78.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCC---HHHH
Q 042945 7 NHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSD---MKLV 83 (172)
Q Consensus 7 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d---l~~~ 83 (172)
.|+.|.|+|++++.+||+++||++...+.+ ....|... +..+.+........ ..++..|++|.|++ ++++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~dl~~~ 75 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--DYAKFLLE-DPRLNFVLNERPGA----PGGGLNHLGVQVDSAEEVAEA 75 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--CeeEEEec-CCceEEEEecCCCC----CCCCeeEEEEEeCCHHHHHHH
Confidence 489999999999999999999998765532 22233322 22333322211111 11467899999987 8899
Q ss_pred HHHHHhCCCeEeeceeecCC-eeEEEEEEECCCCCEEEEEeec
Q 042945 84 MRKLEEMNIEYETAVVDEGG-IQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 84 ~~~l~~~G~~i~~~~~~~~~-~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+++|.++|+++...+....+ .+.+++|++||+||.|||+++.
T Consensus 76 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 76 KARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 99999999998875532211 1246799999999999999753
No 68
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.72 E-value=1.9e-16 Score=103.25 Aligned_cols=111 Identities=28% Similarity=0.419 Sum_probs=83.2
Q ss_pred eEEEEeCCHHHHHHHHHHhhCCEEeeecCC-CcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHHHHHH
Q 042945 8 HVSFVSKSVEKSVMFYEQVLGFVMIKRPSF-NFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKLVMRK 86 (172)
Q Consensus 8 hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~~ 86 (172)
|+.+.|.|++++.+||+++||++....... .....++..++..+++......... ....+..|++|.|+|+++++++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 78 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPA--PSGGGGVHLAFEVDDVDAAYER 78 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCc--ccCCCeeEEEEECCCHHHHHHH
Confidence 899999999999999999999998876431 1223333334566677665433211 2345668999999999999999
Q ss_pred HHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEE
Q 042945 87 LEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEI 121 (172)
Q Consensus 87 l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei 121 (172)
|.++|+.+..++.. ..++.+.+++.||+|+.|||
T Consensus 79 l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 79 LKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 99999998876642 22345889999999999986
No 69
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=3.6e-16 Score=105.78 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=73.7
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcc----------e----EEEEe----CCeeEEEeecCCCCcccCC
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFE----------G----AWLFN----HGIGIHLLESDKAPEKRGK 65 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~----------~----~~~~~----~~~~l~l~~~~~~~~~~~~ 65 (172)
.++.|++|.|+|+++|++||+++|||+...+.+++.. + .++.. .+..+++....... +..
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~--~~~ 78 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG--DYE 78 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC--CCC
Confidence 3689999999999999999999999998775433221 1 22321 12345555432221 112
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 66 INPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 66 ~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
.+. .|++|.|++. ++.++|+++|+++...+. + .++++||||+.|||+.
T Consensus 79 ~g~--~~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 79 LGN--DFLGITIHSK-QAVSNAKKHNWPVTEVED-----G--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCC--CEEEEEEECH-HHHHHHHHCCCceecCCC-----C--EEEEECCCCCEEEEec
Confidence 222 3677777776 556999999998886442 2 5899999999999973
No 70
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=3.9e-16 Score=103.53 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=72.4
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCe--eEEEeecCCCCcccCCCCCCcce--EEEEeCC
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGI--GIHLLESDKAPEKRGKINPKDNH--ISFQCSD 79 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~g~~~--v~~~v~d 79 (172)
.+|+||.|.|.|++++.+||+ .||++...+.+ ...+...++. .+.+.... ..+..| +++.++|
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d 67 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD---GLELRTAGNDHRWARLLEGA---------RKRLAYLSFGIFEDD 67 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC---ceEEEecCCCceEEEeecCC---------CCceeeEEEEeEhhh
Confidence 368999999999999999998 69999875531 2222222212 12222111 112334 4555689
Q ss_pred HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++++++|.++|+++...+.. ++.+.+||+||+||.|||...
T Consensus 68 ~~~~~~~l~~~Gi~~~~~~~~---~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 68 FAAFARHLEAAGVALAAAPPG---ADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred HHHHHHHHHHcCCceecCCCc---CCCCEEEEECCCCCEEEEecC
Confidence 999999999999998765422 233579999999999999964
No 71
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=6e-16 Score=103.38 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=79.6
Q ss_pred EEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCC----cccCCCCCCcceEEEEe---CCHH
Q 042945 9 VSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAP----EKRGKINPKDNHISFQC---SDMK 81 (172)
Q Consensus 9 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~g~~~v~~~v---~dl~ 81 (172)
|+|.|+|+++|.+||+++||+++..+. .....++..++..++++...... ........+..+++|.+ +|++
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 79 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS--NDGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEVD 79 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC--CCceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHHH
Confidence 789999999999999999999987652 12233444456666666533111 01111223445677665 5899
Q ss_pred HHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 82 LVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 82 ~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
++++++.+.|+++..++... ++|.+.++++||+||+|||.+
T Consensus 80 ~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 80 AVLARAAAAGATIVKPPQDV-FWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHhCCCEEecCCccC-CCCceEEEEECCCCCEEEEee
Confidence 99999999999998766543 456788999999999999985
No 72
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.69 E-value=9.9e-16 Score=117.47 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=79.5
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC--C-c---ceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEE
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF--N-F---EGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQ 76 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~-~---~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~ 76 (172)
..+|+||.|.|+|+++|.+||+++|||+...+... + . ...|+..++....+.... ....++.+|++|.
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~------~~~~~~~~Hiaf~ 213 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAA------GPSEKRLNHLMLE 213 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEec------CCCCCceEEEEEE
Confidence 35899999999999999999999999998654211 1 1 133433322211111111 1124567899999
Q ss_pred eCCHHH---HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 77 CSDMKL---VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 77 v~dl~~---~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
|+|+++ +.++|+++|+ +...+......+.+++|++||+|++||+.+..
T Consensus 214 v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 214 VDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred cCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 987776 8999999999 44444333323468899999999999999754
No 73
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.66 E-value=3.1e-15 Score=115.57 Aligned_cols=112 Identities=21% Similarity=0.344 Sum_probs=82.0
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEe-C---CeeEEEeecCCCCcccCCCCCCcceEEEEeC
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFN-H---GIGIHLLESDKAPEKRGKINPKDNHISFQCS 78 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~---~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~ 78 (172)
+++|+|+.|.|+|++++++||+++||+++..+.. ...++.. . ...+.+... ...+..|++|.|+
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~---------~~~g~~hiaf~v~ 69 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG---QRVYLKAWDEWDHYSVILTEA---------DTAGLDHMAFKVE 69 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---ceEEEEeccccccceEeeccC---------CCCceeEEEEEeC
Confidence 5789999999999999999999999999876532 1223322 1 112222111 1246789999997
Q ss_pred ---CHHHHHHHHHhCCCeEeeceee-cCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 79 ---DMKLVMRKLEEMNIEYETAVVD-EGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 79 ---dl~~~~~~l~~~G~~i~~~~~~-~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
++++++++|+++|+++...+.. ..+. .+.+|++|||||.|||++....
T Consensus 70 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~-g~~~~~~DPdG~~iEl~~~~~~ 121 (303)
T TIGR03211 70 SEADLERLVKRLEAYGVGTGWIPAGELPGV-GRRVRFTLPSGHTMELYAEKEY 121 (303)
T ss_pred CHHHHHHHHHHHHHcCCCeeeccCCCCCCc-ceEEEEECCCCCEEEEEEcccc
Confidence 8999999999999998765531 1233 3679999999999999986664
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.64 E-value=6.7e-15 Score=112.90 Aligned_cols=113 Identities=18% Similarity=0.212 Sum_probs=81.0
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCC--eeEEEeecCCCCcccCCCCCCcceEEEEeCC-
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHG--IGIHLLESDKAPEKRGKINPKDNHISFQCSD- 79 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d- 79 (172)
+.+|.|+.|.|+|+++|++||+++||++...+.+ ....|+.... ..+.+.... ..+..|++|.|++
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~f~V~~~ 69 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--NDALYLRLDSRAHRIAVHPGE---------SDDLAYAGWEVADE 69 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--CceEEEEcCCCceEEEEEECC---------cCCeeeEeeeeCCH
Confidence 4689999999999999999999999998765421 1223433332 223332211 1245789999997
Q ss_pred --HHHHHHHHHhCCCeEeeceee--cCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 80 --MKLVMRKLEEMNIEYETAVVD--EGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 80 --l~~~~~~l~~~G~~i~~~~~~--~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
++++.++|+++|+++...+.. ....+.+.++|+|||||.+|++....
T Consensus 70 ~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~ 120 (286)
T TIGR03213 70 AGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAV 120 (286)
T ss_pred HHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEccc
Confidence 899999999999998765421 11123478999999999999998544
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.64 E-value=6.3e-15 Score=113.33 Aligned_cols=111 Identities=24% Similarity=0.241 Sum_probs=81.0
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC--CeeEEEeecCCCCcccCCCCCCcceEEEEeC--
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH--GIGIHLLESDKAPEKRGKINPKDNHISFQCS-- 78 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~-- 78 (172)
|++|+||.|.|+|++++++||+++||+++..+.. ...++... .....+.... . ...+..|++|.|+
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~---~~~~~~~~~~~~~~~l~l~~-~------~~~~~~hiaf~v~~~ 71 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK---EYIYLRGIEEFQHHSLVLTK-A------PSAALSYIGFRVSKE 71 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC---CeEEEeccCcCCceEEEeee-C------CCcCccEEEEEeCCH
Confidence 6789999999999999999999999999876531 23333221 1111111111 0 1235789999997
Q ss_pred -CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 79 -DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 79 -dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
|+++++++|+++|+++...+.. .+.+.+||+|||||.|||++...
T Consensus 72 ~dl~~~~~~l~~~Gv~v~~~~~~---~~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 72 EDLDKAADFFQKLGHPVRLVRDG---GQPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred HHHHHHHHHHHhcCCcEEeecCC---CCceEEEEECCCCCEEEEEEchh
Confidence 8999999999999998764422 23488999999999999998654
No 76
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.62 E-value=4e-14 Score=94.73 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=83.7
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEE-eCC--eeEEEeecCCCCcccCCCCCCcceEEEEeCC
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLF-NHG--IGIHLLESDKAPEKRGKINPKDNHISFQCSD 79 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~--~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d 79 (172)
...+.|..|.|.|++++++||+++||++.....+.+....... ..+ ..=.+..... ...+.....+.|.|+|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~-----~~p~~~~~~iy~~v~d 81 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPG-----SPPGGGGWVIYFAVDD 81 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCc-----CCCCCCCEEEEEecCC
Confidence 3568899999999999999999999999877643321122111 122 1111111111 1112455789999999
Q ss_pred HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+++..+|..++|.+++.++...++. .+.+.+.||+||+|.+++.
T Consensus 82 id~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 82 IDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred hHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeec
Confidence 9999999999999999988877754 4789999999999999874
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.60 E-value=4.3e-14 Score=108.52 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=86.1
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecC---CCcceEEEEeC----CeeEEEeecCCCCcccCCCCCCcceEEEE
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPS---FNFEGAWLFNH----GIGIHLLESDKAPEKRGKINPKDNHISFQ 76 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~---~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~g~~~v~~~ 76 (172)
.++.|+.|.|+|++++.+||+++||++...... ..+...++... ...+++...... .....+++..|++|.
T Consensus 153 ~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~--~~~~~g~~~~~i~~~ 230 (286)
T PLN02300 153 EPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV--TEYTKGNAYAQIAIG 230 (286)
T ss_pred CcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC--CccccCCceeEEEEe
Confidence 468899999999999999999999999875422 11222222211 122343322111 111224567899999
Q ss_pred eCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 77 CSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 77 v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
|+|++++++++.++|+++..+|...++.+.+.++++||||+.++|++..
T Consensus 231 v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 231 TDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred cCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 9999999999999999999887665544447789999999999999754
No 78
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.57 E-value=2.5e-14 Score=94.50 Aligned_cols=92 Identities=22% Similarity=0.335 Sum_probs=70.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhhCCEEeeec---CCCcceEEEEeCC--eeEEEeecCCCCcccCCCCCCcceEEEEeCCHH
Q 042945 7 NHVSFVSKSVEKSVMFYEQVLGFVMIKRP---SFNFEGAWLFNHG--IGIHLLESDKAPEKRGKINPKDNHISFQCSDMK 81 (172)
Q Consensus 7 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~---~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~ 81 (172)
+||+|.|.|+++|++||+++||+...... .......++..++ ..++|+++..........+.|.+||||.|+|++
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~d 80 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDLD 80 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCHH
Confidence 69999999999999999999999876542 2223344554444 578999977554222235778899999999999
Q ss_pred HHHHHHHhCCCeEeece
Q 042945 82 LVMRKLEEMNIEYETAV 98 (172)
Q Consensus 82 ~~~~~l~~~G~~i~~~~ 98 (172)
+..++|.++|+++...+
T Consensus 81 ~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 81 AAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHTTECEEECE
T ss_pred HHHHHHHHCCCEEcccC
Confidence 99999999999988765
No 79
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.56 E-value=7.7e-14 Score=91.44 Aligned_cols=119 Identities=23% Similarity=0.253 Sum_probs=86.2
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCC-----CcccCCCCCCcceEEEEeC-
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKA-----PEKRGKINPKDNHISFQCS- 78 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-----~~~~~~~~~g~~~v~~~v~- 78 (172)
+.-.|+|.|+|+++|.+||+. |||+...+...+.....+...++.+.|++...- .............+|+.+.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s 81 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGS 81 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCc
Confidence 456789999999999999999 999987664333334444455666666664311 1111222445567888886
Q ss_pred --CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 79 --DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 79 --dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
++|++.++..+.|.++..++.+.+.. +...|.|||||.||+.+..+
T Consensus 82 ~eevd~~v~ka~eaGGk~~~~~~d~gfM--Yg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 82 REEVDELVDKALEAGGKPANEPQDEGFM--YGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred HHHHHHHHHHHHHcCCCCCCCccccccc--cceeeeCCCCCeEEEEEeCH
Confidence 79999999999999998777665543 56788999999999998765
No 80
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.55 E-value=2.1e-13 Score=100.86 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=88.6
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC---CH
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS---DM 80 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~---dl 80 (172)
+.+..+.|.|+|+++...||++++|+++..+.+ ..+-+..++..+..+...+....+.....|+.|++|-++ |+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~---~~v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~r~~L 85 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD---GSVTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAFLLPTREDL 85 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC---ceEEEeeCCEEEEEEEeCCCCCCCCccccceeeeeeecCCHHHH
Confidence 568899999999999999999999999998742 334444455544444443333333456789999999998 67
Q ss_pred HHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 81 KLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
..+..++.+.|+++.. ..+. +-.-.+|+.||+||-||++.+++.
T Consensus 86 ~~~l~hl~~~~~~l~G-a~DH--~vSEAlYl~DPEGNGIEiYaDrp~ 129 (265)
T COG2514 86 ARVLNHLAEEGIPLVG-ASDH--LVSEALYLEDPEGNGIEIYADRPR 129 (265)
T ss_pred HHHHHHHHhcCCcccc-cCcc--hhheeeeecCCCCCeEEEEecCCh
Confidence 7888899999999873 2222 223679999999999999988664
No 81
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.5e-12 Score=88.85 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=81.1
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC----------------------cceEEEEeCCeeEEEeecC---C
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN----------------------FEGAWLFNHGIGIHLLESD---K 58 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~----------------------~~~~~~~~~~~~l~l~~~~---~ 58 (172)
..+.|..+++.|+.+|..||.+++|+.+....++. ....|.......+++..+- .
T Consensus 21 ~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes 100 (170)
T KOG2944|consen 21 YLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTES 100 (170)
T ss_pred hhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCC
Confidence 45688888999999999999999998876432110 1113443334445554432 1
Q ss_pred CC---cccCCCCC-CcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 59 AP---EKRGKINP-KDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 59 ~~---~~~~~~~~-g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
.+ ...++..+ |.+||||.|+|++++.++|+++|++....+.+.- . ...+|+.||||+.|||...
T Consensus 101 ~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk-~-K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 101 PPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGK-M-KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCcc-c-cceeEEECCCCCeEEEeec
Confidence 11 11233455 7899999999999999999999999776553311 1 2458999999999999864
No 82
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.42 E-value=9.3e-13 Score=95.43 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=93.5
Q ss_pred cceeceEEEEeC--CHHHHHHHHHHhhCCEEeeecCCCc--ce---EEEEe--CCeeEEEeecCCC--Ccc-----cCCC
Q 042945 3 ILSLNHVSFVSK--SVEKSVMFYEQVLGFVMIKRPSFNF--EG---AWLFN--HGIGIHLLESDKA--PEK-----RGKI 66 (172)
Q Consensus 3 ~~~i~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~--~~---~~~~~--~~~~l~l~~~~~~--~~~-----~~~~ 66 (172)
+++|+||++.|. |++++++||+++|||+.....+... .+ ..+.. ++..+.+.++... ... ....
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 368999999999 9999999999999999877542211 11 12222 2355666665431 110 1113
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCC--------------e----eEEEEEEECCCCCEEEEEeecCCC
Q 042945 67 NPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGG--------------I----QVDQLFFHDPDGYMIEICNCQNLP 128 (172)
Q Consensus 67 ~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~--------------~----g~~~~~~~DPdG~~iei~~~~~~~ 128 (172)
++|..||||.|+|+++++++|+++|+++...|..... + ....++-+|..|+++.+.+.+-.+
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~llq~ft~~~~~ 160 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLLQIFTKPVFD 160 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEEEEeccCCCC
Confidence 5788899999999999999999999999877632110 0 011356677889999999753322
Q ss_pred CCCCCCCCCCCccccccccc
Q 042945 129 VLPLSSCPLKLPSKRSSEKA 148 (172)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ 148 (172)
.+........|....+||+
T Consensus 161 -~~~~f~E~iqR~g~~gfg~ 179 (191)
T cd07250 161 -RPTFFFEIIQRRGYTGFGA 179 (191)
T ss_pred -CCCeEEEEEEEcCCCcccc
Confidence 2233333334445566654
No 83
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.38 E-value=2e-11 Score=79.01 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=77.1
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCee--EEEeecCCCCcccCC---CCCCcce--EEEE
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIG--IHLLESDKAPEKRGK---INPKDNH--ISFQ 76 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--l~l~~~~~~~~~~~~---~~~g~~~--v~~~ 76 (172)
..+-|+.|.|+|++++.+||.++||++.-...+ ..+-+...|.. .|+-...... ..+. +.-...| +.+.
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd---~wvdfDfyGHQ~v~Hl~~q~~~~-~~g~V~~~~v~~pHfGvVl~ 78 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD---TWVDFDFYGHQVVAHLTPQPDSQ-GSGKVDGHGVPPPHFGVVLP 78 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc---eEEEeeecccEEEEEecCCcccc-cCcccCCCCCCCccceEEEE
Confidence 346799999999999999999999998755421 11111222332 2332222111 1111 1111234 5556
Q ss_pred eCCHHHHHHHHHhCCCeEeeceeec---CCeeEEEEEEECCCCCEEEEEeecC
Q 042945 77 CSDMKLVMRKLEEMNIEYETAVVDE---GGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 77 v~dl~~~~~~l~~~G~~i~~~~~~~---~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
++|..++.++|.+.|+...-+|.-+ ....++.+++.||.||.+|+-....
T Consensus 79 ~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 79 VEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred HHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccc
Confidence 7899999999999999887776432 2235789999999999999987543
No 84
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.35 E-value=6.1e-11 Score=80.46 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=73.8
Q ss_pred EEEEe-CCHHHHHHHHHHhhCCEEeeecCCC---------cc----eEEEEeCCeeEEEeecCCCCcccCCCCCCcceEE
Q 042945 9 VSFVS-KSVEKSVMFYEQVLGFVMIKRPSFN---------FE----GAWLFNHGIGIHLLESDKAPEKRGKINPKDNHIS 74 (172)
Q Consensus 9 v~l~v-~D~~~a~~FY~~~LG~~~~~~~~~~---------~~----~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~ 74 (172)
..|.+ .|.++|++||+++||+++......+ .. ...+..++..+.+......... ..+...+++
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~---~~~~~~~l~ 79 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF---TFGNGISLS 79 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC---CCCCCEEEE
Confidence 45667 9999999999999999998753111 01 1222334555555543322111 123456899
Q ss_pred EEeCC---HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 75 FQCSD---MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 75 ~~v~d---l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
+.|+| +++++++|.+.| ++..++... +||.+..+++||+|+.|+|.
T Consensus 80 i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~-~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 80 VECDSEEEADRLFEALSEGG-TVLMPLQKT-FWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EECCCHHHHHHHHHHHhcCC-eEeccchhc-CcccccEEEECCCCCEEEeC
Confidence 99885 778889987766 777666543 57778999999999999873
No 85
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.34 E-value=9.6e-12 Score=98.18 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCcceeceEEEEeC--CHHHHHHHHHHhhCCEEeeecCCC--cce--EEEEe---CCeeEEEeecCCC--Ccc-----cC
Q 042945 1 MPILSLNHVSFVSK--SVEKSVMFYEQVLGFVMIKRPSFN--FEG--AWLFN---HGIGIHLLESDKA--PEK-----RG 64 (172)
Q Consensus 1 m~~~~i~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~--~~~--~~~~~---~~~~l~l~~~~~~--~~~-----~~ 64 (172)
|.+++|+||++.|. |+++++.||+++|||+...+.+.. ..+ .+... ++..+++.++... +.. ..
T Consensus 154 ~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 154 VGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred CCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 34678999999999 999999999999999987653211 111 12222 3356777764221 111 11
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecC-------------Ce----eEEEEEEECCCCCEEEEEeecCC
Q 042945 65 KINPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEG-------------GI----QVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 65 ~~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~-------------~~----g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
..++|..||||.|+|+++.+++|+++|+++..+|..-. .+ ....++-.|.+|+++.|.+.+-.
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~~~ 313 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKPLQ 313 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEeccCCC
Confidence 23578899999999999999999999999887762100 01 01135667889999999985332
Q ss_pred CCCCCCCCCCCCccccccccc
Q 042945 128 PVLPLSSCPLKLPSKRSSEKA 148 (172)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~ 148 (172)
..+........|+...+||.
T Consensus 314 -~~~~~FfEiiqR~~~~gfG~ 333 (353)
T TIGR01263 314 -DRGTLFFEIIQRKGAGGFGE 333 (353)
T ss_pred -CCCCeEEEEEEEcCCCccch
Confidence 22233334444555666664
No 86
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.24 E-value=3.6e-11 Score=80.40 Aligned_cols=117 Identities=24% Similarity=0.374 Sum_probs=71.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcce----EEEEeCCe--eEEEeec---------CCCCcccCCCC-
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEG----AWLFNHGI--GIHLLES---------DKAPEKRGKIN- 67 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~----~~~~~~~~--~l~l~~~---------~~~~~~~~~~~- 67 (172)
++++||.+.|+|+++|++||+++||++........... ........ ....... ...........
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 46899999999999999999999999998764221111 11111110 0000000 00000000011
Q ss_pred --CCcceEEEEeCC---HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 68 --PKDNHISFQCSD---MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 68 --~g~~~v~~~v~d---l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
.+..|+++.+++ ...........|..+..... ..++ ..+|++||||+.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--~~~~-~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP--GRGG-VHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC--CCcc-eEEEEECCCCcEEEeeC
Confidence 246799999998 66666777777888765443 2222 27999999999999973
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.23 E-value=1.9e-10 Score=90.81 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=82.0
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecC--CCcceEEEEeCCeeEEEeecCCCCccc----CCCCCCcceEEEEe
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPS--FNFEGAWLFNHGIGIHLLESDKAPEKR----GKINPKDNHISFQC 77 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~----~~~~~g~~~v~~~v 77 (172)
++++||.+.|+|++++.+||.+.|||+...... .+.....+..++..+++..+....... ..++++..|+||.|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 368999999999999999999999999987621 111122233455667776554322101 12467889999999
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
+|++++++++.++|+.+..+|........+..-+.-+.|..+-|++.
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred CCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 99999999999999999887754311112333445556666666653
No 88
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.17 E-value=2.5e-09 Score=72.78 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=78.7
Q ss_pred EEEEeC-CHHHHHHHHHHhhCCEEeeecCCCc----------ce---EEEEeCCeeEEEeecCCCCcccCCCCCCcceEE
Q 042945 9 VSFVSK-SVEKSVMFYEQVLGFVMIKRPSFNF----------EG---AWLFNHGIGIHLLESDKAPEKRGKINPKDNHIS 74 (172)
Q Consensus 9 v~l~v~-D~~~a~~FY~~~LG~~~~~~~~~~~----------~~---~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~ 74 (172)
-.|..+ |-+++++||+++||.+...+..++. .. .-+..++..+.+.... +........+....|.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~-~~~~~~~~~~~s~~l~ 82 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAF-PDMGATEGGGTSLSLD 82 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCC-CccCcccCCCeeEEEE
Confidence 357778 9999999999999999887643222 11 1111233434333222 1111111122235677
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+.++|++++++++.+.|+++..++.+ ..||.+...++||.|+.|-|....+
T Consensus 83 ~~~~d~da~f~~a~~aGa~v~mpl~~-~fwG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 83 LYVEDVDAVFERAAAAGATVVMPLED-TFWGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEehHHHHHHHHHHhcCCeEEecchh-cCcccceEEEECCCCCEEEEecCcc
Confidence 78889999999999999999987754 4578899999999999999987554
No 89
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.6e-10 Score=84.07 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=95.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCc----------ceEEE----EeC-CeeEEEeecC-CCCcccCCCC
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNF----------EGAWL----FNH-GIGIHLLESD-KAPEKRGKIN 67 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~----------~~~~~----~~~-~~~l~l~~~~-~~~~~~~~~~ 67 (172)
.+..|+++.|.|.++++.||+++|||++....++.. +..|. ..+ ...+.+++.+ +........+
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 578899999999999999999999999987643322 22222 222 2233333332 3333445557
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC--CCCCCCCCCCCCcccccc
Q 042945 68 PKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL--PVLPLSSCPLKLPSKRSS 145 (172)
Q Consensus 68 ~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~--~~~~~~~~~~~~~~~~~~ 145 (172)
.+..|+.+.++|+-+..+.+...|.+ .++- -.+++.||||+.|++.+..+. |+....-...++..++.-
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~-------~~g~--~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~VgdL~ks~ky 166 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGK-------GSGC--GIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGDLQKSIKY 166 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCc-------ccce--EEEEEECCCCcEEEEeccCCCCCCeEEEEEEehhHHHHHHH
Confidence 78889999999999888888776542 2222 348899999999999975554 444555677778888888
Q ss_pred ccccc
Q 042945 146 EKAAC 150 (172)
Q Consensus 146 ~~~~~ 150 (172)
|+...
T Consensus 167 w~~~l 171 (299)
T KOG2943|consen 167 WEKLL 171 (299)
T ss_pred HHHHh
Confidence 87544
No 90
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.14 E-value=4.2e-10 Score=86.84 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=71.3
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeC---CHH
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCS---DMK 81 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~---dl~ 81 (172)
+.-||+|.|+|+++|++||+.+|++.. ... .... .. +.....++..... ........+|+.++ ++|
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsd---e~a~-cm-~dtI~vMllt~~D-----~~~~~evLl~Ls~~Sre~VD 315 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WDG---DKLF-LL-GKTSLYLQQTKAE-----KKNRGTTTLSLELECEHDFV 315 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CCC---Cccc-cc-cCcEEEEEecCCC-----CCCcceEEEEeccCCHHHHH
Confidence 356999999999999999999999875 321 1222 22 2222222222221 12334568899887 699
Q ss_pred HHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 82 LVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 82 ~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
++.++..++|.+...++.+ .|+ .--|.|||||+||+++..
T Consensus 316 ~lv~~A~aaGG~~~~~~~D-~Gf---~rsf~D~DGH~WEi~~~~ 355 (357)
T PRK01037 316 RFLRRWEMLGGELGEQADG-HFP---LRLVFDLDGHIWVVSCVQ 355 (357)
T ss_pred HHHHHHHHcCCCCCCCccc-ccC---cceeECCCCCEEEEEEEe
Confidence 9999999999976554443 344 345699999999999753
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.85 E-value=9.5e-09 Score=81.68 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=84.3
Q ss_pred cceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCC---c-----ceEEEEeC--CeeEEEeecCCC---Ccc-----cC
Q 042945 3 ILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFN---F-----EGAWLFNH--GIGIHLLESDKA---PEK-----RG 64 (172)
Q Consensus 3 ~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~-----~~~~~~~~--~~~l~l~~~~~~---~~~-----~~ 64 (172)
+.+|+||++.|.+++.++.||+++|||......+.. . ....+... ...+.|.++... ... ..
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~~ 257 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLEH 257 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHHh
Confidence 468999999999999999999999999887643211 1 11222222 255777776421 111 12
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHhC----CCeEeecee--------ecC-------Ce----eEEEEEEECCCCCEEEE
Q 042945 65 KINPKDNHISFQCSDMKLVMRKLEEM----NIEYETAVV--------DEG-------GI----QVDQLFFHDPDGYMIEI 121 (172)
Q Consensus 65 ~~~~g~~~v~~~v~dl~~~~~~l~~~----G~~i~~~~~--------~~~-------~~----g~~~~~~~DPdG~~iei 121 (172)
..++|..||||.|+||.+..++|++. |++....|. .+- .+ ....++-.|.+|+++.|
T Consensus 258 ~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LLQI 337 (398)
T PLN02875 258 NEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLLQI 337 (398)
T ss_pred cCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEEEE
Confidence 23588999999999999999999999 999888541 001 11 11235667888999999
Q ss_pred Eeec
Q 042945 122 CNCQ 125 (172)
Q Consensus 122 ~~~~ 125 (172)
.+..
T Consensus 338 FTkp 341 (398)
T PLN02875 338 FTKP 341 (398)
T ss_pred eccc
Confidence 9753
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=6e-08 Score=70.86 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=77.3
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC--CeeEEEeecCCCCcccCCCCCCcceEEEEeCCHHH
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH--GIGIHLLESDKAPEKRGKINPKDNHISFQCSDMKL 82 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~ 82 (172)
.+..|.|.|.|+++|++||+++||+++..... ......+..+ ...+++......- ....+.+...+++..+++..
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee-k~t~~~mgYgd~q~~LElt~~~~~i--d~~kg~griafaip~d~~~~ 225 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE-KYTRARMGYGDEQCVLELTYNYDVI--DRAKGFGRIAFAIPTDDLPK 225 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhh-hhhhhhhccCCcceEEEEEeccCcc--cccccceeEEEecccccccc
Confidence 36789999999999999999999999987421 1111222222 2346665543221 11112233445555568899
Q ss_pred HHHHHHhCCCeEeeceeec---CCeeEEEEEEECCCCCEEEEEeecC
Q 042945 83 VMRKLEEMNIEYETAVVDE---GGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~---~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+.+.++..+.++..+.+.. .+...+..-+.||||+.+.|+....
T Consensus 226 l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~ 272 (299)
T KOG2943|consen 226 LQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEG 272 (299)
T ss_pred HHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHH
Confidence 9999998877766654332 2335677889999999999986433
No 93
>PRK10148 hypothetical protein; Provisional
Probab=98.71 E-value=2e-06 Score=59.74 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=70.2
Q ss_pred EEEEeC-CHHHHHHHHHHhhCCEEeeecC---CC----------------cce----EEEEeCCeeEEEeecCCCCcccC
Q 042945 9 VSFVSK-SVEKSVMFYEQVLGFVMIKRPS---FN----------------FEG----AWLFNHGIGIHLLESDKAPEKRG 64 (172)
Q Consensus 9 v~l~v~-D~~~a~~FY~~~LG~~~~~~~~---~~----------------~~~----~~~~~~~~~l~l~~~~~~~~~~~ 64 (172)
..|... |-+++++||+++||.++..... .. ... ..+..++..+.+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~---- 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG---- 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc----
Confidence 355564 8999999999999988764311 00 011 1112234434333221111
Q ss_pred CCCCCcceEEEEeCCHHH---HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 65 KINPKDNHISFQCSDMKL---VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 65 ~~~~g~~~v~~~v~dl~~---~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
.......++++.++|.++ ++++| +.|.++..++.. ..|+.+...++||.|+.|.|.....
T Consensus 81 ~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~-~~wg~~~g~v~D~fGi~W~l~~~~~ 143 (147)
T PRK10148 81 KAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQE-TFWAHGFGKVTDKFGVPWMINVVKQ 143 (147)
T ss_pred CCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchh-cchhhccEEEECCCCCEEEEEecCC
Confidence 111135688888888776 55666 578888876654 4577788999999999999987533
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.71 E-value=1.4e-07 Score=70.22 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=56.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCccc---CCCCCCcceEEEEeCCH
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEKR---GKINPKDNHISFQCSDM 80 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~---~~~~~g~~~v~~~v~dl 80 (172)
+.|+||.|.|.|++++.+||+++|||+.+.+ .....|+..++..+|+....+..... .....|...+.+.+.+-
T Consensus 167 t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~---~~~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~~~~ 243 (265)
T COG2514 167 TIIGHVHLKVADLEEAEQFYEDVLGLEVTAR---GPSALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHTPDP 243 (265)
T ss_pred cEEeEEEEEeCCHHHHHHHHHHhcCCeeeec---CCcceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEcCCc
Confidence 6799999999999999999999999999876 23467777788878887766554322 22456777888887763
No 95
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.60 E-value=2.4e-07 Score=70.37 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=74.8
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC--C--cceEEEEeCCeeEEEee-cCCCCc-cc----CCCCCCcc
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF--N--FEGAWLFNHGIGIHLLE-SDKAPE-KR----GKINPKDN 71 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~--~~~~~~~~~~~~l~l~~-~~~~~~-~~----~~~~~g~~ 71 (172)
++.+++||.+.|.|...+..||+..|||+....... + .........|....++. ...+.. .. ..++-|..
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 457899999999999999999999999998763211 0 11112223343333333 222211 11 22456678
Q ss_pred eEEEEeCCHHHHHHHHHhCCCeEeeceeecCC-ee-EEEEEEECCC
Q 042945 72 HISFQCSDMKLVMRKLEEMNIEYETAVVDEGG-IQ-VDQLFFHDPD 115 (172)
Q Consensus 72 ~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~-~g-~~~~~~~DPd 115 (172)
.+||+|+|++++.+.+.++|+++..+|..... .| .+...+..+.
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tyg 139 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYG 139 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEeccc
Confidence 99999999999999999999999988754332 12 3455555443
No 96
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.55 E-value=5.5e-06 Score=66.12 Aligned_cols=120 Identities=8% Similarity=0.057 Sum_probs=81.9
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeecCC-Cc---ceEEEEeC-CeeEEEeecCCCC------------------cc
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF-NF---EGAWLFNH-GIGIHLLESDKAP------------------EK 62 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~---~~~~~~~~-~~~l~l~~~~~~~------------------~~ 62 (172)
++||.++|.|..++..||+..|||+.+..... .. ...++... ...+.+..+..+. ..
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 68999999999999999999999998875421 11 12333344 3444333332110 00
Q ss_pred -----cCCCCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCC---e-eEEEEEEECCCCCEEEEEeec
Q 042945 63 -----RGKINPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGG---I-QVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 63 -----~~~~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~---~-g~~~~~~~DPdG~~iei~~~~ 125 (172)
-..++++...|+|+|+|++++++++.+.|+++..+|+.... . .....-+.-+.|.++-|++..
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 01246778899999999999999999999998887754322 1 134556777888888888754
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.53 E-value=2e-06 Score=58.91 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=79.0
Q ss_pred CCcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcc--cCCCCCCcceEEEEeC
Q 042945 1 MPILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEK--RGKINPKDNHISFQCS 78 (172)
Q Consensus 1 m~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~g~~~v~~~v~ 78 (172)
|.+.++.+|.+.+.|.++...+++. |||+...+.. +.......++...+.+-..+..... ...++++..-++|.|+
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~~-lGF~~~a~hr-sk~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~ 82 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFTA-LGFQPVARHR-SKDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVD 82 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHCC-CCEEEECCEC-CCSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES
T ss_pred CCCCCeEEEEEecCCHHHHHHHHHH-hCcceEEecC-CcceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeC
Confidence 3467899999999998888888865 9999987642 2223334455666655442221110 1224778889999999
Q ss_pred CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 79 DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 79 dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
|.++++++..+.|.+...++..... ...--++-+.|-++-|++..
T Consensus 83 Da~~A~~rA~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 83 DAAAAYERAVALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp -HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--
T ss_pred CHHHHHHHHHHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEecC
Confidence 9999999999999998887755443 35567788999999888753
No 98
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.50 E-value=1.1e-06 Score=62.82 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=63.0
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeeec---CCCcceEEEEeCCeeEEEeecCCCCccc--C--------CCCCCcce
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKRP---SFNFEGAWLFNHGIGIHLLESDKAPEKR--G--------KINPKDNH 72 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~~~~~~~--~--------~~~~g~~~ 72 (172)
|+|+.+.|+|++++.++|++.|||.+.... ..+.....+...+..++++...+..... . ..+.|...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 689999999999999999888999998753 2233344444455589999864322110 1 13567789
Q ss_pred EEEEeCCHHHHHHHHHhCCCeEeeceeecCC-eeEEEEEEECC----CCCEEEEEeecC
Q 042945 73 ISFQCSDMKLVMRKLEEMNIEYETAVVDEGG-IQVDQLFFHDP----DGYMIEICNCQN 126 (172)
Q Consensus 73 v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~-~g~~~~~~~DP----dG~~iei~~~~~ 126 (172)
+|+.++|+++..++|.+.|+.........+. ..-+.+++.++ .+..-++++..+
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~ 139 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWET 139 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS
T ss_pred EEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCC
Confidence 9999999999999999999863222211111 11244566664 245556665444
No 99
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.42 E-value=4e-07 Score=70.17 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=91.7
Q ss_pred cceeceEEEEe--CCHHHHHHHHHHhhCCEEeeecCCCcceE------EEEeCC-eeEEEeecCCCCc-----ccCCCCC
Q 042945 3 ILSLNHVSFVS--KSVEKSVMFYEQVLGFVMIKRPSFNFEGA------WLFNHG-IGIHLLESDKAPE-----KRGKINP 68 (172)
Q Consensus 3 ~~~i~hv~l~v--~D~~~a~~FY~~~LG~~~~~~~~~~~~~~------~~~~~~-~~l~l~~~~~~~~-----~~~~~~~ 68 (172)
+..|+|++..| .+++.+..||+++|||+.....+...... +.+..+ ..+-|-.+.+... .....+.
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~ 244 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGE 244 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCC
Confidence 35789997777 69999999999999999887643322221 111122 2233333222221 1123577
Q ss_pred CcceEEEEeCCHHHHHHHHHhCCCeEeeceeec--------CC----e----eEEEEEEECCCC-CEEEEEeecCCCCCC
Q 042945 69 KDNHISFQCSDMKLVMRKLEEMNIEYETAVVDE--------GG----I----QVDQLFFHDPDG-YMIEICNCQNLPVLP 131 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~--------~~----~----g~~~~~~~DPdG-~~iei~~~~~~~~~~ 131 (172)
|..||+|.++||-++.+++++.|++....|..- .+ + ....+|-.|++| .++.|.+..- .-+
T Consensus 245 GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~~e~ld~Lr~~~IL~D~~~~~~~lLQift~~~--~g~ 322 (363)
T COG3185 245 GIQHIAFGTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLHGEFLDALRELEILYDGDGGGGELLQIFTRTF--IGP 322 (363)
T ss_pred cceEEEecccHHHHHHHHHHHcCCccCCCchhHHHHHhhcCCCChHHHHHHHhcCeEeecCCCCcEEEEEecccc--cCc
Confidence 889999999999999999999999999876321 00 0 122367778887 6777775321 223
Q ss_pred CCCCCCCCcccccccccc
Q 042945 132 LSSCPLKLPSKRSSEKAA 149 (172)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (172)
...+...-+...++||..
T Consensus 323 ~FFEiIeRR~g~~GfGeg 340 (363)
T COG3185 323 FFFEIIERRKGYQGFGEG 340 (363)
T ss_pred eeEEEEEecccccccccc
Confidence 344444445777788754
No 100
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.39 E-value=3.3e-05 Score=50.84 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=60.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeC-CeeEEEeecCCCCc-ccCCCCCCcceEEEEeCCHHHHH
Q 042945 7 NHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNH-GIGIHLLESDKAPE-KRGKINPKDNHISFQCSDMKLVM 84 (172)
Q Consensus 7 ~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~~~-~~~~~~~g~~~v~~~v~dl~~~~ 84 (172)
.+-.|.|.|-+..++||+++|||++..+. ....++... +....+++.++... ..-........+.+.|++..++.
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EE---na~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe 78 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEE---NALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIE 78 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEE---TTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeecc---ccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHH
Confidence 45689999999999999999999999873 223444332 22223343332221 12222334678999999877664
Q ss_pred HHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 85 RKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 85 ~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+ |.+.|..+.. ..+.. +++.|-..+|+|..|.+....
T Consensus 79 ~-LLar~~~~~~-l~kg~--~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 79 A-LLARGAQYDR-LYKGK--NGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp H-HHHC-S--SE-EEE-S--SSEEEEEE-TT--EEEEE--S
T ss_pred H-HHhcccccce-eEEcC--CceEEEEECCCCCEEEEEEcC
Confidence 4 4455555333 22222 237788899999999998643
No 101
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.29 E-value=0.011 Score=39.22 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHhhCCEEeee-cCCCc------c---eEEEEeCCeeEEEeecCCCCcccCCCCCCcceEEEEeCC---H
Q 042945 14 KSVEKSVMFYEQVLGFVMIKR-PSFNF------E---GAWLFNHGIGIHLLESDKAPEKRGKINPKDNHISFQCSD---M 80 (172)
Q Consensus 14 ~D~~~a~~FY~~~LG~~~~~~-~~~~~------~---~~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d---l 80 (172)
.+-++|..||.++||-..+.. .+.+. . ...+...+..+...... .. ........+++.++| +
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~-~~----~~~~~~~sl~i~~~~~ee~ 85 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGG-PD----FPFGNNISLCIECDDEEEI 85 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEES-TS--------TTEEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCC-CC----CCCCCcEEEEEEcCCHHHH
Confidence 689999999999999533221 11110 0 12233345555554443 11 112234788888885 5
Q ss_pred HHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 81 KLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
+.++++|.+.|- .++ ...+++|..|..|.|+
T Consensus 86 ~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 86 DRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 567788888775 233 6689999999999875
No 102
>PF15067 FAM124: FAM124 family
Probab=96.80 E-value=0.018 Score=42.52 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=56.4
Q ss_pred eeceEEEEeC--CHHHHHHHHHHhhCCEEeeecCCCcceEEE-EeC--CeeEEEeecCCCCcccCCCCCCcceEEEEeCC
Q 042945 5 SLNHVSFVSK--SVEKSVMFYEQVLGFVMIKRPSFNFEGAWL-FNH--GIGIHLLESDKAPEKRGKINPKDNHISFQCSD 79 (172)
Q Consensus 5 ~i~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~--~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v~d 79 (172)
.+--++|+|+ |.+.+++||+-+|+-+...+.. +-.++ ... +..+-+.-.. .+........-..-+.|.|.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~---~FC~F~lys~~~~~iQlsLK~-lp~~~~p~p~esavLqF~V~~ 203 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE---DFCFFTLYSQPGLDIQLSLKQ-LPPGMSPEPTESAVLQFRVED 203 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC---CcEEEEEecCCCeEEEEEecc-CCCCCCcccccceEEEEEecc
Confidence 4567899998 9999999999999998865531 11111 122 2222221111 111111112233579999999
Q ss_pred HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEE
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIE 120 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~ie 120 (172)
+.++.--|-.- +..++ . +.| -..|||||.|=
T Consensus 204 igqLvpLLPnp-c~PIS----~---~rW--qT~D~DGNkIL 234 (236)
T PF15067_consen 204 IGQLVPLLPNP-CSPIS----E---TRW--QTEDYDGNKIL 234 (236)
T ss_pred hhhhcccCCCC-ccccc----C---Ccc--eeeCCCCCEec
Confidence 98875443322 11111 1 122 34899999874
No 103
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=96.70 E-value=0.051 Score=42.58 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=69.0
Q ss_pred CcceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEe-CCeeEEEeecCCCCc---ccCCCCCCcceEEEEe
Q 042945 2 PILSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFN-HGIGIHLLESDKAPE---KRGKINPKDNHISFQC 77 (172)
Q Consensus 2 ~~~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~---~~~~~~~g~~~v~~~v 77 (172)
...++.+|.+.|.|.+.+..-|-..|||....+.-- ..+.+.. +...+ ++..+.... -...++++..-++|.|
T Consensus 19 ~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrs--k~v~l~rQGdinl-vvn~~~~s~a~~f~~~Hgps~~a~a~~V 95 (363)
T COG3185 19 GTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRS--KAVTLYRQGDINL-VVNAEPDSFAAEFLDKHGPSACAMAFRV 95 (363)
T ss_pred CCCceeEEEEecCCHHHHHHHHHHHhCccccccccc--cceeEEEeCCEEE-EEcCCCcchhhHHHHhcCCchheeEEee
Confidence 347899999999999544444455599998765421 2333444 44444 333332221 1123577788999999
Q ss_pred CCHHHHHHHHHhCCCeEeecee-----ec---CCeeEEEEEEECCC
Q 042945 78 SDMKLVMRKLEEMNIEYETAVV-----DE---GGIQVDQLFFHDPD 115 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~-----~~---~~~g~~~~~~~DPd 115 (172)
+|....+++..+.|.+....+. .. .+.|...+|+.|.+
T Consensus 96 ~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 96 DDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred CCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 9999999999999985443331 00 11133456777776
No 104
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0024 Score=49.04 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=78.2
Q ss_pred CcceeceEEEEeC--CHHHHHHHHHHhhCCEEeeecCCCcceE-------EEE-eCCee--EEEeecCCCCcc-------
Q 042945 2 PILSLNHVSFVSK--SVEKSVMFYEQVLGFVMIKRPSFNFEGA-------WLF-NHGIG--IHLLESDKAPEK------- 62 (172)
Q Consensus 2 ~~~~i~hv~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~~-------~~~-~~~~~--l~l~~~~~~~~~------- 62 (172)
.+.+++|++..+. .++.+.+||.+.|||.--+..+...... ++. ..... +-+-++-+....
T Consensus 175 ~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqey 254 (381)
T KOG0638|consen 175 GLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQEY 254 (381)
T ss_pred ceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHHH
Confidence 4678999999998 6789999999999998766532111110 011 11111 222222111111
Q ss_pred -cCCCCCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCe--------------------eEEEEEEECCCCCEEEE
Q 042945 63 -RGKINPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGI--------------------QVDQLFFHDPDGYMIEI 121 (172)
Q Consensus 63 -~~~~~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~--------------------g~~~~~~~DPdG~~iei 121 (172)
....++|..|+++.++|+-++.+.+++.|.+...+|..-... ....+.-.|-+|+++.|
T Consensus 255 v~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQI 334 (381)
T KOG0638|consen 255 VEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQI 334 (381)
T ss_pred HHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeee
Confidence 112467889999999999999999999999999777221000 01124445888999999
Q ss_pred Eee
Q 042945 122 CNC 124 (172)
Q Consensus 122 ~~~ 124 (172)
.+.
T Consensus 335 FTK 337 (381)
T KOG0638|consen 335 FTK 337 (381)
T ss_pred ecc
Confidence 974
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.45 E-value=0.02 Score=37.22 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=41.8
Q ss_pred ceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCC-CEEEEEeecCC
Q 042945 71 NHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDG-YMIEICNCQNL 127 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG-~~iei~~~~~~ 127 (172)
.|++|.|+|++++.+.+.+ .|+........ .+.+.+..++..++| ..||++++...
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~-~~~~v~~~~~~~~~~~~~iELi~p~~~ 58 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRD-EPQGVRVAFLYLGDGPVQIELIQPLDG 58 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEE-GCTTEEEEEEEETTETEEEEEEEESST
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEec-CCCCEEEEEEEeCCCcEEEEEEEeCCC
Confidence 4999999999999999998 89876654332 233456677888888 78999986553
No 106
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=94.57 E-value=0.23 Score=34.66 Aligned_cols=32 Identities=9% Similarity=0.185 Sum_probs=28.8
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecC
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPS 36 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~ 36 (172)
++++||+|.|.|+.++..-+++ .|.+...+.+
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~ 145 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLK 145 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCC
Confidence 5899999999999999999999 9999877653
No 107
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.32 E-value=0.19 Score=32.47 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=39.5
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCcceEEEEeCCeeEEEeecCCCCcc-cCCCCCCcceEEEEeC---CH
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNFEGAWLFNHGIGIHLLESDKAPEK-RGKINPKDNHISFQCS---DM 80 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~g~~~v~~~v~---dl 80 (172)
.+..+.|.|.| .++.+||+++||-... .... +.+...+... .....=++..+-|.|+ |+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~------~~l~----------f~ea~G~DL~~~~~~twDLe~Lkf~V~~~~Dl 67 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP------FFLT----------FQEAQGPDLTIENNETWDLEMLKFQVPKDFDL 67 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT------TTEE----------EEE---CCGSS-TTSBSSEEEEEEEES-S--H
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC------ceEE----------EeeccCCccccCCCcEEeeEEEEEEecCcccH
Confidence 35678999999 8899999999873221 1122 2222211111 1112234556778887 78
Q ss_pred HHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 81 KLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 81 ~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
.++.+++.+.++= . + .. .+.+.+.||.|.-|
T Consensus 68 ~~L~~~le~~~~f-i--d--Kk---~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 68 AALKSHLEEQEFF-I--D--KK---EKFLVTSDPSQIEL 98 (101)
T ss_dssp HHHHHHTTTS-EE-------TT----SEEEEE-TTS-EE
T ss_pred HHHHHHhcccceE-e--c--CC---ceEEEEECCcceEE
Confidence 8888888883321 1 1 11 25688899987544
No 108
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=93.98 E-value=0.11 Score=36.79 Aligned_cols=54 Identities=11% Similarity=0.255 Sum_probs=29.4
Q ss_pred ceEEEEeCCHHHHHHHH-HhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 71 NHISFQCSDMKLVMRKL-EEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l-~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
.|+.+.|+|+++..+++ ...|.++....... ++|.....+.=++| +||++...+
T Consensus 2 DH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~-~~GT~N~li~f~~~-YlEli~i~~ 56 (175)
T PF13468_consen 2 DHLVIAVRDLDAAVERFEQRLGFTVTPGGEHP-GWGTANALIPFGDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEE-TTGGG----GGGS--S--EEEEE-T-TT-EEEEEEE-SSS-EEEEEEES-
T ss_pred CEEEEEcCCHHHHHHhhhhcceEeecCCCcCC-CCccEEEEEeeCCc-eEEEEEeCC
Confidence 59999999999999999 78899988765443 33333333333677 999999544
No 109
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=92.41 E-value=0.96 Score=30.41 Aligned_cols=57 Identities=21% Similarity=0.441 Sum_probs=39.1
Q ss_pred CcceEEEEeCCHHHHHHHHHhCCCeEeeceeecC----------CeeEEEEEEECCCC-CEEEEEeec
Q 042945 69 KDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEG----------GIQVDQLFFHDPDG-YMIEICNCQ 125 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~----------~~g~~~~~~~DPdG-~~iei~~~~ 125 (172)
+..|+++.|.|+++..+...+.|.++........ +.+....++..|+| ..+|+.+..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 4689999999999999998888987654332111 11234456666655 688999854
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.08 E-value=1.6 Score=28.21 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=38.5
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECC---CCCEEEEEeecC
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDP---DGYMIEICNCQN 126 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DP---dG~~iei~~~~~ 126 (172)
+..|+++.|+|+++..+...+ .|.+.........+.+....++.+. .|..+++++...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 357999999999999999986 5887665432222111234555554 677888886533
No 111
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=91.29 E-value=2 Score=30.97 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=42.1
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeee-cCCCcceEEEE-------eCCeeEEEeecCCCCcccCCCCCCcceEEE
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKR-PSFNFEGAWLF-------NHGIGIHLLESDKAPEKRGKINPKDNHISF 75 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~-~~~~~~~~~~~-------~~~~~l~l~~~~~~~~~~~~~~~g~~~v~~ 75 (172)
..++||.++|++.+.+.+|-+..+..-..-. ...+++-.++. .++..+.+++.+.+.. +..+..|.-||.|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Yp~eGWEHIE~ 111 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD-KRYPQEGWEHIEF 111 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S-S--SS-EEEEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCCCCCCceEEEE
Confidence 4589999999999999999999886544332 22233333332 2455666777653332 3334668889999
Q ss_pred EeC
Q 042945 76 QCS 78 (172)
Q Consensus 76 ~v~ 78 (172)
.++
T Consensus 112 Vip 114 (185)
T PF06185_consen 112 VIP 114 (185)
T ss_dssp E--
T ss_pred Eec
Confidence 997
No 112
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=90.64 E-value=3.1 Score=26.69 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=38.1
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+..|+++.|.|+++..+...+ .|..+......... ..+.+.+..+++..+++....
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPER-GSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCC-CcEEEEEecCCCcEEEEEEcC
Confidence 568999999999999999985 79887654322111 123344555677788887644
No 113
>PRK11700 hypothetical protein; Provisional
Probab=89.78 E-value=5.9 Score=28.55 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=48.3
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeee-cCCCcceEEEEe-------CCeeEEEeecCCCCcccCCCCCCcceEEE
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKR-PSFNFEGAWLFN-------HGIGIHLLESDKAPEKRGKINPKDNHISF 75 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~-~~~~~~~~~~~~-------~~~~l~l~~~~~~~~~~~~~~~g~~~v~~ 75 (172)
..++||.++|++.+.+.+|-+..+..-..-. ...+++-.++.. ++..+.+++.+.+.. +..+..|.-||.+
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp~eGWEHIEl 116 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRYPHEGWEHIEL 116 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCCCCCceEEEE
Confidence 3579999999999999999988775433221 223333333332 345567777664433 3345678889999
Q ss_pred EeC
Q 042945 76 QCS 78 (172)
Q Consensus 76 ~v~ 78 (172)
.++
T Consensus 117 Vlp 119 (187)
T PRK11700 117 VLP 119 (187)
T ss_pred Eec
Confidence 997
No 114
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=89.41 E-value=2.4 Score=26.09 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=34.2
Q ss_pred CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 79 DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 79 dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
..+++.+.+.+.|+.+..--.+.. |.+.++..|.||+.+|+.-.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~--g~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDD--GCYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCC--CEEEEEEEECCCCEEEEEEc
Confidence 689999999999996665333233 34889999999999999853
No 115
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=88.61 E-value=4.7 Score=28.06 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=39.9
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeecee---ec-------------CCe-eEEEEEEECCCCCEEEEEeecC
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETAVV---DE-------------GGI-QVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~---~~-------------~~~-g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+..|+++.|.|+++..+...+ .|.++...+. .. .++ ..+..++..++|..+|+++...
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 568999999999999999977 6887643210 00 011 1344566667788899998764
No 116
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=88.30 E-value=6.6 Score=27.20 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=46.9
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCCEEeee-cCCCcceEEEEe-------CCeeEEEeecCCCCcccCCCCCCcceEEEEe
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGFVMIKR-PSFNFEGAWLFN-------HGIGIHLLESDKAPEKRGKINPKDNHISFQC 77 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~~~~~~-~~~~~~~~~~~~-------~~~~l~l~~~~~~~~~~~~~~~g~~~v~~~v 77 (172)
++||.++|.+.+.+.+|-+.++..-..-. ...+++-.++.. .+..+.+++.+.+.. ...+..|.-||.+.+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Yp~eGWEHIE~Vl 80 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD-KKYPQEGWEHIEIVI 80 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCCCCCceEEEEEe
Confidence 68999999999999999998775433221 222333333322 345566777664433 333466888999998
Q ss_pred C
Q 042945 78 S 78 (172)
Q Consensus 78 ~ 78 (172)
+
T Consensus 81 p 81 (149)
T cd07268 81 P 81 (149)
T ss_pred c
Confidence 7
No 117
>PLN02367 lactoylglutathione lyase
Probab=88.11 E-value=2.5 Score=31.65 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=37.2
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCc--ceEEEE-eCCeeEEEeecC
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNF--EGAWLF-NHGIGIHLLESD 57 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~--~~~~~~-~~~~~l~l~~~~ 57 (172)
.+++||++.|.|++++.+..++ .|.++...+..+. ...++. -.|..+++++..
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 3799999999999999999988 9999886542211 122222 236667777654
No 118
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=86.33 E-value=4.7 Score=26.04 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=36.7
Q ss_pred ceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 71 NHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
.|+++.|+|+++..+...+ .|...........+.+....++.. +|..++|.+...
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~ 57 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPLD 57 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEECC
Confidence 5999999999999999887 687765433221111223445553 678899997543
No 119
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=85.70 E-value=5.3 Score=28.77 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=35.0
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCCCc--ceEEE-EeCCeeEEEeecC
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSFNF--EGAWL-FNHGIGIHLLESD 57 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~--~~~~~-~~~~~~l~l~~~~ 57 (172)
++.|+.+.|.|++++.+.+++ .|.++...+.... ...++ .-.|..+++++..
T Consensus 121 G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 121 GFGHIGITVDDVYKACERFEK-LGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred CccEEEEEcCCHHHHHHHHHH-CCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 689999999999999999988 8998875432111 11222 1235666666644
No 120
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=83.28 E-value=8.8 Score=26.60 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=34.9
Q ss_pred CcceEEEEeCCHHHHHHHHHhC-CCeEeeceeecCCeeEEEEEEEC-CCCCEEEEEee
Q 042945 69 KDNHISFQCSDMKLVMRKLEEM-NIEYETAVVDEGGIQVDQLFFHD-PDGYMIEICNC 124 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~~-G~~i~~~~~~~~~~g~~~~~~~D-PdG~~iei~~~ 124 (172)
|..|+++.|.|+++..+...+. |.++.... .+ ...++..+ .++..+++.+.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~---~~--~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEE---GD--RVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeee---CC--EEEEEecCCCCCCEEEEEeC
Confidence 4689999999999999999764 88766432 11 12222222 35788999874
No 121
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=81.82 E-value=11 Score=24.05 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=36.4
Q ss_pred ceEEEEeCCHHHHHHHHHhC-CCeEeeceeecCCeeEEEEEEECCC---CCEEEEEeec
Q 042945 71 NHISFQCSDMKLVMRKLEEM-NIEYETAVVDEGGIQVDQLFFHDPD---GYMIEICNCQ 125 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~~-G~~i~~~~~~~~~~g~~~~~~~DPd---G~~iei~~~~ 125 (172)
.|+++.|.|+++..+...+. |.++........+ +...+++..++ +..+++....
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEG-KFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCC-ceEEEEecCCCCCCccEEEEEecC
Confidence 69999999999999999875 9887654322221 12335555554 5788887643
No 122
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=81.24 E-value=10 Score=23.20 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.8
Q ss_pred eEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 72 HISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 72 ~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
|+.+.+.|+++..+.+.+ .|.++...... .. ....++.++ +..++|......
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~-~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GG-AEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CC-EEEEEEecC-CceEEEecCCCC
Confidence 788999999999999997 89887765422 11 244666665 789999976543
No 123
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=80.07 E-value=12 Score=24.34 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=35.2
Q ss_pred CcceEEEEeCCHHHHHHHHHhC----CCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 69 KDNHISFQCSDMKLVMRKLEEM----NIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~~----G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
+..|+++.|+|+++..+...+. |.+..... .. ...|+...++..++++....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~--~~----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW--ED----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee--cc----CceEEecCCceEEEEEeccc
Confidence 4579999999999999988776 88766533 11 11333334567888886543
No 124
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=79.73 E-value=12 Score=26.86 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=40.0
Q ss_pred CcceEEEEeC--CHHHHHHHHHh-CCCeEeeceeecC-CeeEEEEEEECCCC-CEEEEEeec
Q 042945 69 KDNHISFQCS--DMKLVMRKLEE-MNIEYETAVVDEG-GIQVDQLFFHDPDG-YMIEICNCQ 125 (172)
Q Consensus 69 g~~~v~~~v~--dl~~~~~~l~~-~G~~i~~~~~~~~-~~g~~~~~~~DPdG-~~iei~~~~ 125 (172)
+..|+++.|+ |++++.+...+ .|.+......... ..+.++..+..|+| ..+++.+..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence 4579999999 99999998865 6887655332111 22456778888875 567888644
No 125
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=79.28 E-value=14 Score=23.63 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=34.7
Q ss_pred cceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 70 DNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 70 ~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
..|+++.|+|+++..+-..+ .|.++........ .+....|+.-.+|..+++++.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPR-KGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCC-CCceEEEEecCCCcEEEEEcC
Confidence 46999999999999998877 4777543211111 122234444446788999864
No 126
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=79.01 E-value=14 Score=23.54 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=38.0
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeecee-ecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETAVV-DEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~-~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
|..|+++.|.|+++..+...+ .|.++..... ..........++...+ ..+++.....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 59 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE-GHIELFLNPS 59 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS-SCEEEEEEES
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc-cceeeeeecc
Confidence 357999999999999998887 5888777554 2222223445555554 4566666544
No 127
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=78.44 E-value=14 Score=23.22 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.7
Q ss_pred eEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCC--CEEEEEe
Q 042945 72 HISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDG--YMIEICN 123 (172)
Q Consensus 72 ~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG--~~iei~~ 123 (172)
|+++.|.|+++..+...+ .|.++........ +...+.+.++++ ..+++..
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 53 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG--GFRWVTVAPPGSPETSLVLAP 53 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC--CcEEEEEeCCCCCeeEEEEeC
Confidence 789999999999998887 7988775432112 224456666654 4566654
No 128
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=77.63 E-value=13 Score=23.01 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=34.2
Q ss_pred ceEEEEeCCHHHHHHHHH-hCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 71 NHISFQCSDMKLVMRKLE-EMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~-~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
.|+++.|+|++++.+... ..|.+....+... . ...++..+++..+++.....
T Consensus 2 ~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~-~---~~~~~~~~~~~~i~l~~~~~ 54 (114)
T cd07245 2 DHVALRVPDLEASRAFYTDVLGLEEGPRPPFL-F---PGAWLYAGDGPQLHLIEEDP 54 (114)
T ss_pred CeEEEecCCHHHHHHHHHHccCCcccCcCCCC-C---CceEEEeCCCcEEEEEecCC
Confidence 699999999999999887 4587655433211 1 22455555555788886544
No 129
>PRK10291 glyoxalase I; Provisional
Probab=76.69 E-value=18 Score=23.63 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=34.3
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeec-CC-Cc-c-eEEE-EeCCeeEEEeecC
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRP-SF-NF-E-GAWL-FNHGIGIHLLESD 57 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~-~~-~~-~-~~~~-~~~~~~l~l~~~~ 57 (172)
+++|+.+.|.|++++.+-.++ .|.++...+ .. .. . ..++ .-.|..+++++..
T Consensus 65 ~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 65 AYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 588999999999999888877 888776432 11 11 1 1222 2246677787755
No 130
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.55 E-value=7.2 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.5
Q ss_pred CcceEEEEeCCHHHHHHHHHhCCCeE
Q 042945 69 KDNHISFQCSDMKLVMRKLEEMNIEY 94 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~~G~~i 94 (172)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44678999999999999999999875
No 131
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=74.04 E-value=21 Score=23.76 Aligned_cols=52 Identities=13% Similarity=-0.029 Sum_probs=35.5
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeecCC-Ccce--EEEE-eCCeeEEEeecC
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRPSF-NFEG--AWLF-NHGIGIHLLESD 57 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~-~~~~--~~~~-~~~~~l~l~~~~ 57 (172)
++.|+.+.|.|++++.+-.++ .|.++...+.. .... .++. -.|..+++++..
T Consensus 69 g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 69 GVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 578999999999999999888 89988765422 2212 2221 235667777654
No 132
>PRK11478 putative lyase; Provisional
Probab=72.99 E-value=23 Score=22.95 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=34.2
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeec
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~ 125 (172)
+..|+++.|+|+++..+...+ .|.++........ .+.+...+.-.++..+++++..
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~ 62 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREA-RDSWKGDLALNGQYVIELFSFP 62 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccc-cccceeeEecCCCcEEEEEEec
Confidence 457999999999999998865 5888754221111 0111112222346788888643
No 133
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=70.76 E-value=31 Score=23.61 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=34.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-CCCeEeeceeecC--CeeEEEEEEE-CCCCCEEEEEee
Q 042945 68 PKDNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEG--GIQVDQLFFH-DPDGYMIEICNC 124 (172)
Q Consensus 68 ~g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~--~~g~~~~~~~-DPdG~~iei~~~ 124 (172)
.+..|+++.|+|+++..+...+ .|.++........ +.+....++. ++.++.+.+.+.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 3578999999999999998876 6887654321110 0011223333 455566766543
No 134
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.00 E-value=16 Score=21.20 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=21.4
Q ss_pred cceEEEEe--CCHHHHHHHHHhCCCeEeec
Q 042945 70 DNHISFQC--SDMKLVMRKLEEMNIEYETA 97 (172)
Q Consensus 70 ~~~v~~~v--~dl~~~~~~l~~~G~~i~~~ 97 (172)
...+.|.+ ++.+.+.+.|+++|+++..+
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 34456655 48889999999999988753
No 135
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.28 E-value=41 Score=22.56 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=23.8
Q ss_pred cceEEEEeCCHHHHHHHHHh-CCCeEeece
Q 042945 70 DNHISFQCSDMKLVMRKLEE-MNIEYETAV 98 (172)
Q Consensus 70 ~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~ 98 (172)
..|+++.|.|+++..+-..+ .|.++....
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 57999999999999998865 699876533
No 136
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=63.94 E-value=33 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=24.2
Q ss_pred ceeceEEEEeCCHHHHHHHHHHh--hCCEEe
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQV--LGFVMI 32 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~--LG~~~~ 32 (172)
.+++|+.+.|.|++...+++..+ .|.++.
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~ 91 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTG 91 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence 57899999999999999988876 566654
No 137
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=63.92 E-value=28 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.3
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeee
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKR 34 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 34 (172)
.++.|+.+.|.|++++.+...+ .|.++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~ 114 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVRE 114 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccC
Confidence 3578999999999999999988 88876643
No 138
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=62.98 E-value=37 Score=21.66 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=31.2
Q ss_pred ceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 71 NHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
.|+.+.|+|+++..+.....|.++.... ... ..+.+.-++|..+.+..
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~---~~~--~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEA---DDE--PHVEAVLPGGVRLAWDT 49 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCc---CCC--CcEEEEeCCCEEEEEEc
Confidence 5899999999999998887887764321 110 12444555566665543
No 139
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=62.29 E-value=3.2 Score=22.48 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=19.4
Q ss_pred eceEEEEeCCHHHHHHHHHHhhCC
Q 042945 6 LNHVSFVSKSVEKSVMFYEQVLGF 29 (172)
Q Consensus 6 i~hv~l~v~D~~~a~~FY~~~LG~ 29 (172)
+.-.++.+++.++..+||+..|..
T Consensus 12 ~De~giP~~~vd~~kDWYktMFkq 35 (47)
T PF02208_consen 12 VDESGIPLSNVDRPKDWYKTMFKQ 35 (47)
T ss_pred cccCCCccccccchhHHHHHHHHH
Confidence 344567889999999999998754
No 140
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.43 E-value=33 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCeEeeceeecC-CeeEEEEEEECCCCCEE
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEG-GIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~-~~g~~~~~~~DPdG~~i 119 (172)
+..+.+-|...|+.+...-.... +.-.-.||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 56677888899998886543322 23346799999999876
No 141
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=61.22 E-value=44 Score=21.97 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.3
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEee
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYET 96 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~ 96 (172)
+..|+++.|+|+++..+...+ .|.+...
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEE
Confidence 568999999999999998876 6876544
No 142
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=59.68 E-value=43 Score=21.38 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=33.7
Q ss_pred cceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 70 DNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 70 ~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
..|+++.|+|+++..+...+ .|.++..... ..+.+.. .++..+++..+++.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~~~~~~-~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEE-VPEQGVK-VVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCcccee-CCCCCcE-EEEEecCCEEEEEEec
Confidence 47999999999999998875 5877654321 1111222 3333344677888764
No 143
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=59.26 E-value=40 Score=20.82 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=25.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeee
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKR 34 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~ 34 (172)
.+..|+.+.|.|++++.+...+ +|.+....
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 4578999999999999999999 89887654
No 144
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=58.51 E-value=44 Score=21.09 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=23.7
Q ss_pred CcceEEEEeCCHHHHHHHHHhCCCeEee
Q 042945 69 KDNHISFQCSDMKLVMRKLEEMNIEYET 96 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~~G~~i~~ 96 (172)
+..|+++.|.|+++..+.....|..+..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 4579999999999999988878887653
No 145
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=56.04 E-value=54 Score=21.32 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=34.0
Q ss_pred cceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECC--CCCEEEEEeec
Q 042945 70 DNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDP--DGYMIEICNCQ 125 (172)
Q Consensus 70 ~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DP--dG~~iei~~~~ 125 (172)
..|+.+.|.|+++..+...+ .|.++...... . ...|+..+ .+..+.+....
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~-~----~~~~~~~~~~~~~~l~l~~~~ 55 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL-G----GLVFLSRDPDEHHQIALITGR 55 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC-C----cEEEEEecCCCceEEEEEecC
Confidence 47999999999999999987 78876643211 1 22444433 35677777543
No 146
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.30 E-value=68 Score=22.26 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=56.9
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEee---e-c--CCCc-ce----EEEEeCCeeEEEeecCCCCcccCCCCCCcce
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIK---R-P--SFNF-EG----AWLFNHGIGIHLLESDKAPEKRGKINPKDNH 72 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~---~-~--~~~~-~~----~~~~~~~~~l~l~~~~~~~~~~~~~~~g~~~ 72 (172)
.++.-.-..-.+.+++..||.++|.=..+. + + ..++ .+ ..+...|.....+....... .... -...
T Consensus 4 ~kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~--f~fn-eA~S 80 (151)
T COG3865 4 PKITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTS--FKFN-EAFS 80 (151)
T ss_pred CcceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcC--CCcC-ccEE
Confidence 444444455589999999999999644332 1 1 1111 11 11222344444443321110 1011 1133
Q ss_pred EEEEeC---CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 73 ISFQCS---DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 73 v~~~v~---dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
+-+.++ .+|.+...|.+.|.. . ....|++|-.|.-|.|+
T Consensus 81 ~~v~~~~q~E~Drlwnal~~~g~e----~-------~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 81 FQVACDDQEEIDRLWNALSDNGGE----A-------EACGWLKDKFGVSWQIV 122 (151)
T ss_pred EEEEcCCHHHHHHHHHHHhccCcc----h-------hcceeEecccCcEEEEc
Confidence 444555 577788888888752 1 13467899999999998
No 147
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=53.97 E-value=17 Score=24.84 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=22.8
Q ss_pred ceeceEEEEeCCHHHHHHHHHHh--hCCEEee
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQV--LGFVMIK 33 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~--LG~~~~~ 33 (172)
.+++|+++.|.|+++..+.+..+ .|.++..
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVW 97 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEee
Confidence 46899999999999998655553 5676553
No 148
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.43 E-value=28 Score=21.32 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=22.5
Q ss_pred cceEEEEeCC----HHHHHHHHHhCCCeEee
Q 042945 70 DNHISFQCSD----MKLVMRKLEEMNIEYET 96 (172)
Q Consensus 70 ~~~v~~~v~d----l~~~~~~l~~~G~~i~~ 96 (172)
...+.+++++ ++++.+.|+++|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3567788888 99999999999998764
No 149
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=50.46 E-value=64 Score=20.53 Aligned_cols=49 Identities=4% Similarity=0.119 Sum_probs=34.0
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECCC-CCEEEEEee
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDPD-GYMIEICNC 124 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DPd-G~~iei~~~ 124 (172)
...|+.+.|+|+++..+...+ .|.++.... + ..+++...+ +..+.+...
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~----~---~~~~l~~~~~~~~l~l~~~ 52 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT----D---STAVLGTGGKRPLLVLEED 52 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC----C---CEEEEecCCCeEEEEEEeC
Confidence 357999999999999998886 588876531 1 124455544 567777654
No 150
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=48.72 E-value=51 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCCcceEEEEe------CCHHHHHHHHHhCCCeEe
Q 042945 67 NPKDNHISFQC------SDMKLVMRKLEEMNIEYE 95 (172)
Q Consensus 67 ~~g~~~v~~~v------~dl~~~~~~l~~~G~~i~ 95 (172)
+...+|+.+.| .||+++.+.++++|+++.
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 56678999999 999999999999998877
No 151
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=48.00 E-value=76 Score=20.67 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=31.8
Q ss_pred ceEEEEeCCHHHHHHHHHh-CCCeEeeceeecCCeeEEEEEEECC-CCCEEEEEe
Q 042945 71 NHISFQCSDMKLVMRKLEE-MNIEYETAVVDEGGIQVDQLFFHDP-DGYMIEICN 123 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~-~G~~i~~~~~~~~~~g~~~~~~~DP-dG~~iei~~ 123 (172)
.|+++.|+|+++..+...+ .|.++....... +. ....|++.. .+..+++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GV-DAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-Cc-eeEEEEEcCCCcceEEEEc
Confidence 3899999999999998876 698876432211 11 123444443 344566665
No 152
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=46.07 E-value=25 Score=23.56 Aligned_cols=84 Identities=13% Similarity=0.253 Sum_probs=50.9
Q ss_pred eeceEEEEeCCHHHHHHHHHHhhCCEEeeec----CC-CcceEE------EEeCCeeEEEeecCCCCcccCCCCCCcceE
Q 042945 5 SLNHVSFVSKSVEKSVMFYEQVLGFVMIKRP----SF-NFEGAW------LFNHGIGIHLLESDKAPEKRGKINPKDNHI 73 (172)
Q Consensus 5 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~----~~-~~~~~~------~~~~~~~l~l~~~~~~~~~~~~~~~g~~~v 73 (172)
.++-+.+.|.+.+.+.+-.++ =||.+.... +. +..+.. +...+.++..+...-. ...-..+
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~-------ek~KAll 112 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVT-------EKQKALL 112 (142)
T ss_pred CcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeee-------cCceEEE
Confidence 356678899999999999998 799876531 00 001100 0011222222211100 0011357
Q ss_pred EEEeCCHHHHHHHHHhCCCeEee
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYET 96 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~ 96 (172)
-++|+|+|+....|.++|++...
T Consensus 113 i~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 113 IVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEhhHHHHHHHHHHHcCCeecC
Confidence 88999999999999999998775
No 153
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=45.38 E-value=1e+02 Score=21.36 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=24.5
Q ss_pred CCcceEEEEeCCHHHHHHHHHh-CCCeEeec
Q 042945 68 PKDNHISFQCSDMKLVMRKLEE-MNIEYETA 97 (172)
Q Consensus 68 ~g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~ 97 (172)
.+..|+.+.|+|+++..+...+ .|.++...
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 3567999999999999999975 68876543
No 154
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=45.01 E-value=48 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.1
Q ss_pred ceEEEEeCCHHHHHHHHHhCCCeEe
Q 042945 71 NHISFQCSDMKLVMRKLEEMNIEYE 95 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~~G~~i~ 95 (172)
..+-+.++|.+++.+.|+++|+++.
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEEE
Confidence 3566677898899999999998763
No 155
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=45.01 E-value=51 Score=21.61 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=29.0
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
.+.-.|++.+.+.|.++|++|...-+ +|...+.++|.--+|.++
T Consensus 60 ~IG~rNv~~a~~~L~~~gi~I~a~dv--GG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 60 NIGERNVEAARELLAEEGIPIVAEDV--GGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp -HHHHHHHHHHHHHHHTT--EEEEEE---SSS-EEEEEETTTTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCcEEEeeC--CCCCCcEEEEEcCCCEEE
Confidence 33445999999999999999997653 333347787777777655
No 156
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.76 E-value=73 Score=19.29 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCeEeeceeecCC-eeEEEEEEECCCCCEE
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGG-IQVDQLFFHDPDGYMI 119 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~-~g~~~~~~~DPdG~~i 119 (172)
+-.+...|.+.|+.+...-....+ .-...||++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 556677888899988865433332 2346799999999865
No 157
>CHL00193 ycf35 Ycf35; Provisional
Probab=43.25 E-value=1e+02 Score=20.82 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=45.6
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCe-e-E--EEEEEECCCCCEEEEEeecCCCCCCCCCCCCCCccccccccccc
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGI-Q-V--DQLFFHDPDGYMIEICNCQNLPVLPLSSCPLKLPSKRSSEKAAC 150 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~-g-~--~~~~~~DPdG~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (172)
=.+.|++.+.+.|.+.|+.+...+....++ | . -.+-+.-++|+-|.|..... ..++-+....|...+
T Consensus 9 T~i~d~~~L~~AL~dLg~~~~~~~~~vrgy~gq~~~a~lvi~~~~~~diGf~~n~~---------~YeLV~Dl~~w~q~~ 79 (128)
T CHL00193 9 TSIQNLNLLKKALNDLNIEWKKENQVIKGYNGQTHNADLVIKQSNNYDIGFVWNGQ---------EYELVADLSFWQQPW 79 (128)
T ss_pred eEEcCHHHHHHHHHHcCCCceeCCceeeccCCCeEEEEEEEEcCCCCceeEeeCCC---------EEEEEEEcchhccCC
Confidence 356799999999999999987643322222 1 1 22566777889898886322 233333344566666
Q ss_pred chH-HHHHH
Q 042945 151 SGE-VVATL 158 (172)
Q Consensus 151 ~~~-~~~~~ 158 (172)
+.+ ++..+
T Consensus 80 ~~e~fl~kl 88 (128)
T CHL00193 80 SVENFLDKL 88 (128)
T ss_pred CHHHHHHHH
Confidence 555 44443
No 158
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.50 E-value=20 Score=26.64 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHhhCCEEee
Q 042945 14 KSVEKSVMFYEQVLGFVMIK 33 (172)
Q Consensus 14 ~D~~~a~~FY~~~LG~~~~~ 33 (172)
.|+.++..||.+.||+.+..
T Consensus 145 a~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hccHHHHHHHHHhcCceeee
Confidence 46788899999999999864
No 159
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=40.24 E-value=38 Score=15.35 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=9.6
Q ss_pred EEEEEECCCCCEEE
Q 042945 107 DQLFFHDPDGYMIE 120 (172)
Q Consensus 107 ~~~~~~DPdG~~ie 120 (172)
-...+.|++|++|-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34677899999874
No 160
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=40.21 E-value=71 Score=24.64 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=37.0
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCCCCCC
Q 042945 67 NPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNLPVLP 131 (172)
Q Consensus 67 ~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~~~~~ 131 (172)
.-|..|+.+.|+|++. ..+...|-.+...+....+.+..+.-+.+++-.++..+|......++
T Consensus 152 s~GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~Fp~~vNV~F~~v~~~~~i~vrv~ERG~G~T~A 214 (272)
T COG0253 152 SMGNPHLVIFVDDVET--ANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGAGETLA 214 (272)
T ss_pred ecCCCeEEEEeCCccc--chhhhhhhhhhcCccCCCceEEEEEEeCCCCcEEEEEeecCCccccc
Confidence 3467899999998777 34444444433333323334445555667777777877765433333
No 161
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=40.19 E-value=1.2e+02 Score=20.78 Aligned_cols=28 Identities=7% Similarity=0.261 Sum_probs=23.3
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEee
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYET 96 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~ 96 (172)
+..|+++.|.|+++..+-..+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 457999999999999998877 6887653
No 162
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.82 E-value=1.4e+02 Score=21.37 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=49.3
Q ss_pred ceeceEEEEeCCHHHHHHHHHHhhCCEEeee-cCCCcceEEEEe-------CCeeEEEeecCCCCcccCCCCCCcceEEE
Q 042945 4 LSLNHVSFVSKSVEKSVMFYEQVLGFVMIKR-PSFNFEGAWLFN-------HGIGIHLLESDKAPEKRGKINPKDNHISF 75 (172)
Q Consensus 4 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~-~~~~~~~~~~~~-------~~~~l~l~~~~~~~~~~~~~~~g~~~v~~ 75 (172)
..++|+.|+|.+-+-+..|-...+..-..-. .-.+++-.++.. .+..+.+++.+.+.. +..+..|--||.|
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iNGRpI~li~l~~Pl~v~~w~id~iELP~P~~-K~YP~egWEHIEi 116 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSENLINGRPICLIKLHQPLQVAHWQIDIIELPYPKN-KRYPHEGWEHIEI 116 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcCCceEEEEEcCCcceecceEEEEEEccCCcC-CCCCCcCceeEEE
Confidence 4689999999999888888665543321111 112233334432 234466677664444 3334568889999
Q ss_pred EeC-CHHHHHHHHH
Q 042945 76 QCS-DMKLVMRKLE 88 (172)
Q Consensus 76 ~v~-dl~~~~~~l~ 88 (172)
..+ +.+++..+..
T Consensus 117 VlP~~peel~~~~~ 130 (185)
T COG3102 117 VLPGDPEELNARAL 130 (185)
T ss_pred EcCCChHHHHHHHH
Confidence 997 5555544433
No 163
>PRK03467 hypothetical protein; Provisional
Probab=36.31 E-value=1.5e+02 Score=20.58 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
+++..+.+.|.++-+--.........|-...||+.|+++..+=|.+....
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~T 54 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEKT 54 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCCC
Confidence 35667777777776543332223334555668888999998888876554
No 164
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=36.13 E-value=84 Score=19.22 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=16.8
Q ss_pred EEEeCCHHHHHHHHHHhhCCEEeee
Q 042945 10 SFVSKSVEKSVMFYEQVLGFVMIKR 34 (172)
Q Consensus 10 ~l~v~D~~~a~~FY~~~LG~~~~~~ 34 (172)
.....+-..|.++|++ |||+...+
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344677889999999 99998753
No 165
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.96 E-value=86 Score=22.11 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=30.8
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
+.-.|++.+.+.|.++|+++...- .++...+.++|.--+|..+
T Consensus 109 IG~rNv~~a~~~L~~~gI~i~a~d--vGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 109 IGNRNGKAVKKKLKELSIPILAED--IGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEEE
Confidence 444599999999999999998754 3333346677766667554
No 166
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.61 E-value=57 Score=18.84 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=19.9
Q ss_pred cceEEEEeC---CHHHHHHHHHhCCCeEe
Q 042945 70 DNHISFQCS---DMKLVMRKLEEMNIEYE 95 (172)
Q Consensus 70 ~~~v~~~v~---dl~~~~~~l~~~G~~i~ 95 (172)
..++.+++. +++++.+.|+++|+.+.
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 356777775 67888999999998753
No 167
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=33.19 E-value=1.5e+02 Score=19.83 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=23.6
Q ss_pred CcceEEEEeCCHHHHHHHHHh-CCCeEeec
Q 042945 69 KDNHISFQCSDMKLVMRKLEE-MNIEYETA 97 (172)
Q Consensus 69 g~~~v~~~v~dl~~~~~~l~~-~G~~i~~~ 97 (172)
+..|+++.|.|+++..+...+ .|.++...
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEEE
Confidence 567999999999999998866 68876543
No 168
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.04 E-value=1e+02 Score=21.69 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=30.8
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
+.-.|++.+.+.|.++|+++...-. ++...+.++|.--+|..+
T Consensus 102 IG~rNi~~a~~~L~~~gI~i~a~dv--GG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 102 IGARNVEAVKKHLKDFGIKLVAEDT--GGNRARSIEYNIETGKLL 144 (159)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEeC--CCCCCcEEEEECCCCEEE
Confidence 4445999999999999999987543 333346677776667654
No 169
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=32.59 E-value=78 Score=18.34 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.7
Q ss_pred eeceEEEEe-CCHHHHHHHHHHhhCCE
Q 042945 5 SLNHVSFVS-KSVEKSVMFYEQVLGFV 30 (172)
Q Consensus 5 ~i~hv~l~v-~D~~~a~~FY~~~LG~~ 30 (172)
++..+.+.+ .+-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 456666666 455568999998 8874
No 170
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.01 E-value=1.1e+02 Score=21.65 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=30.5
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
+.-.|++.+.+.|.++|+++.... .+|...+.++|.--+|..+
T Consensus 111 IG~rNv~~a~~~L~~~gI~i~a~D--vGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 111 VGLENSEFAVNTLNKYGIPILAKD--FDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 344599999999999999998754 3333346677766666553
No 171
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.97 E-value=1.5e+02 Score=19.35 Aligned_cols=19 Identities=5% Similarity=0.322 Sum_probs=17.7
Q ss_pred EEEEEECCCCCEEEEEeec
Q 042945 107 DQLFFHDPDGYMIEICNCQ 125 (172)
Q Consensus 107 ~~~~~~DPdG~~iei~~~~ 125 (172)
+++|+.+|...++...++.
T Consensus 41 YSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 41 YSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred eEEEecCCcccEEEEEEEc
Confidence 7899999999999999987
No 172
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.90 E-value=1.1e+02 Score=21.73 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=30.7
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
.+.-.|++.+.+.|.++|+++...-. ++...+.++|.--+|..+
T Consensus 111 ~IG~rNi~~a~~~L~~~gi~i~a~Dv--GG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 111 NVADKNIHAALALAEQNGLHLKAQDL--GSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEEeC--CCCCCcEEEEECCCCEEE
Confidence 34456999999999999999987542 333336676666666553
No 173
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=30.97 E-value=1.2e+02 Score=19.83 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=32.8
Q ss_pred EeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 76 QCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 76 ~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
...+..+.+++|+..|..-.......-..|.-.+...|++|.+.+-..+.-
T Consensus 22 Qik~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~G 72 (109)
T PF06923_consen 22 QIKNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMKG 72 (109)
T ss_pred HHHHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEec
Confidence 345678889999999943332221111124566788899999998776544
No 174
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=60 Score=21.74 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.3
Q ss_pred ceEEEEeCCHHHHHHHHHhCCCeEe
Q 042945 71 NHISFQCSDMKLVMRKLEEMNIEYE 95 (172)
Q Consensus 71 ~~v~~~v~dl~~~~~~l~~~G~~i~ 95 (172)
.|+-+.-+|++++.+.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4666666799999999999998764
No 175
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=30.68 E-value=1.1e+02 Score=21.67 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=24.1
Q ss_pred EEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCC
Q 042945 73 ISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPD 115 (172)
Q Consensus 73 v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPd 115 (172)
+=+.+.|++.+.++|.+.|......-. +.-.|+..|+
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~ 42 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPC 42 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCC
Confidence 345677999999999999865443211 2335666665
No 176
>PRK03094 hypothetical protein; Provisional
Probab=30.02 E-value=1.4e+02 Score=18.44 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=31.5
Q ss_pred EeC-CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEe
Q 042945 76 QCS-DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 76 ~v~-dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~ 123 (172)
.|+ ++..+.+.|+++|+++..-.....-.+.-.+-+..-|.|...+..
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d 53 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIAD 53 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccc
Confidence 343 788899999999999875432111112345777777888777653
No 177
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=30.00 E-value=1.2e+02 Score=21.17 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=30.3
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
+.-.|++.+.+.|.++|+++...- ..+...+.++|.--+|..+
T Consensus 104 IG~rNi~~a~~~L~~~gi~i~a~d--vGG~~gR~i~f~~~tG~v~ 146 (157)
T PRK13488 104 IGERNIESAKETLKKLGIRIVAED--VGGDYGRTVKFDLKTGKVI 146 (157)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEE--cCCCCCcEEEEECCCCEEE
Confidence 444699999999999999998754 2333336676666666553
No 178
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=29.81 E-value=52 Score=16.26 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=15.2
Q ss_pred EEEEeCCHHHHHHHHHHhhCC
Q 042945 9 VSFVSKSVEKSVMFYEQVLGF 29 (172)
Q Consensus 9 v~l~v~D~~~a~~FY~~~LG~ 29 (172)
+.....|.++++.+|++.|.+
T Consensus 8 ~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 8 IYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 334457899999999997754
No 179
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.14 E-value=1.3e+02 Score=21.72 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=30.3
Q ss_pred EeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 76 QCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 76 ~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
.-.|++.+.+.|.++|+++...- .+|...+.++|.--+|..+
T Consensus 110 G~rNi~~a~~~L~~~gI~i~a~D--vGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 110 GEQNAAFAMQFLRDEGIPVVGSS--TGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCeEE
Confidence 34599999999999999998754 3333336677766667664
No 180
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=28.65 E-value=77 Score=17.97 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=11.9
Q ss_pred EEEEEECCCCCEEEEEe
Q 042945 107 DQLFFHDPDGYMIEICN 123 (172)
Q Consensus 107 ~~~~~~DPdG~~iei~~ 123 (172)
..|.|+|.+|.++.+.-
T Consensus 10 s~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVKV 26 (54)
T ss_dssp -EEEEE-TTS-EEEEEG
T ss_pred CeeEEECCCCCEEEEEh
Confidence 35788999999999874
No 181
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=28.52 E-value=1.7e+02 Score=21.45 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCC
Q 042945 68 PKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPD 115 (172)
Q Consensus 68 ~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPd 115 (172)
.+..+|.+.-.|+.++...+...|+..........+-+.+.++|.-.|
T Consensus 32 ~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 32 KGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 345667777778999999999998876653322222123445555433
No 182
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=28.27 E-value=1.4e+02 Score=19.94 Aligned_cols=52 Identities=12% Similarity=-0.051 Sum_probs=33.7
Q ss_pred EeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 76 QCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 76 ~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
.+.+....+++|+..|..-.......-..|.-.+...|.+|.+++-..+.-.
T Consensus 23 Qik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~G~ 74 (118)
T PRK10234 23 QISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMKGL 74 (118)
T ss_pred HHHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEccE
Confidence 4457788899999998532221111111145567888999999988776654
No 183
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=27.96 E-value=43 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=27.8
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
+|.-.|.+.+.+.| .|+.+...+.. + +...|+..|||||-.-++
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSK--Q-PVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccc--c-ceEEEEeeCCCccchhhc
Confidence 34445666666644 56666654322 1 357899999999876554
No 184
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.88 E-value=1.3e+02 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=28.9
Q ss_pred eCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 77 CSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 77 v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
-.|++.+.+.|.++|+++...- .+|...+.++|.--+|..+
T Consensus 138 ~rNi~~a~~~L~~~gI~Iva~D--vGG~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 138 EKNVEFVLEYAKREKLNVVAQD--LGGAQPRKLLFDPQTGQAW 178 (213)
T ss_pred HHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 3489999999999999998754 3333336676666666544
No 185
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=27.81 E-value=83 Score=19.68 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=20.9
Q ss_pred CcceEEEEeC---CHHHHHHHHHhCCCeEee
Q 042945 69 KDNHISFQCS---DMKLVMRKLEEMNIEYET 96 (172)
Q Consensus 69 g~~~v~~~v~---dl~~~~~~l~~~G~~i~~ 96 (172)
+...++|.++ +++++.++|.+.|++...
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 4567888887 467899999999988765
No 186
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=27.70 E-value=1.1e+02 Score=20.40 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=21.9
Q ss_pred eeceEEEEe-CCHHHHHHHHHHhhCCEEeee
Q 042945 5 SLNHVSFVS-KSVEKSVMFYEQVLGFVMIKR 34 (172)
Q Consensus 5 ~i~hv~l~v-~D~~~a~~FY~~~LG~~~~~~ 34 (172)
++..+.+.| .+-.++++||++ +||.....
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~ 141 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGT 141 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEee
Confidence 456677776 455678999998 99997654
No 187
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=27.58 E-value=1.1e+02 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCEEeeecCCCc
Q 042945 19 SVMFYEQVLGFVMIKRPSFNF 39 (172)
Q Consensus 19 a~~FY~~~LG~~~~~~~~~~~ 39 (172)
+.+|+++-||+.+...+++..
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed 69 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFED 69 (86)
T ss_pred hHHHHHhccCCceEecCCCcC
Confidence 569999999999998876543
No 188
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=27.13 E-value=93 Score=17.01 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.1
Q ss_pred EEEEECCCCCEEEEEe
Q 042945 108 QLFFHDPDGYMIEICN 123 (172)
Q Consensus 108 ~~~~~DPdG~~iei~~ 123 (172)
+..+.||||....+..
T Consensus 30 sY~y~~pdG~~~~V~Y 45 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTY 45 (52)
T ss_pred EEEEECCCCCEEEEEE
Confidence 4778999999888775
No 189
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=26.95 E-value=1.3e+02 Score=17.00 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 78 SDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
-++++..++-..+|-.+.... .. +. .-..+|||.++-|.+...
T Consensus 4 ~~ls~~ea~~l~~Gr~l~~~~--~~--g~--~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 4 RELSAEEARDLRHGRRLPAAG--PP--GP--VAAFAPDGRLVALLEERG 46 (56)
T ss_dssp EE--HHHHHHHHTT---B---------S---EEEE-TTS-EEEEEEEET
T ss_pred eECCHHHHHHHhCCCccCCCC--CC--ce--EEEECCCCcEEEEEEccC
Confidence 356667777778887766531 11 22 456899999999997644
No 190
>PRK13577 diaminopimelate epimerase; Provisional
Probab=25.99 E-value=2.1e+02 Score=21.88 Aligned_cols=56 Identities=18% Similarity=0.044 Sum_probs=30.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEee
Q 042945 67 NPKDNHISFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNC 124 (172)
Q Consensus 67 ~~g~~~v~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~ 124 (172)
..|..|+.+.|+|++.. .+...|-.+...+....+.+..++++.|++-..+..+|.
T Consensus 155 s~G~PH~Vv~V~~~~~~--~~~~~g~~~~~~~~fp~~~Nv~f~~~~~~~~i~~R~~Er 210 (281)
T PRK13577 155 TIGNPHCVVLLDEISEE--LARELGPLIETHPRFPNRTNVQFLKVLDRNTIQIEIWER 210 (281)
T ss_pred ECCCCcEEEEeCCcchh--hHHhhCccccccCCCCCCceEEEEEEccCCeEEEEEECC
Confidence 35778999999987654 233344444332222223455556666665444455543
No 191
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=25.73 E-value=1.6e+02 Score=21.67 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
.+.-.|++.+.+.|.++|+++...- .+|...+.++|.--+|.++
T Consensus 123 ~IG~rNi~~a~~~L~~~gI~iva~D--vGG~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 123 NVGERNAEFVRDYLQTERIPIVAED--LLDIYPRKVYFFPTTGKVL 166 (201)
T ss_pred CchHHHHHHHHHHHHHcCCcEEEEE--CCCCCCcEEEEECCCCEEE
Confidence 3444699999999999999998754 3333336676666666554
No 192
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.09 E-value=74 Score=18.11 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=16.3
Q ss_pred EEEEe---CCHHHHHHHHHhCCCeE
Q 042945 73 ISFQC---SDMKLVMRKLEEMNIEY 94 (172)
Q Consensus 73 v~~~v---~dl~~~~~~l~~~G~~i 94 (172)
+.+.+ ++.+++.+.|+++|+++
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCcC
Confidence 34444 47789999999999863
No 193
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=1.9e+02 Score=20.74 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=25.5
Q ss_pred EEeecCCCCcccCCCCCCcceEEEEeCCHHHHHHHHH
Q 042945 52 HLLESDKAPEKRGKINPKDNHISFQCSDMKLVMRKLE 88 (172)
Q Consensus 52 ~l~~~~~~~~~~~~~~~g~~~v~~~v~dl~~~~~~l~ 88 (172)
.+|+.+.-....+..+.+...+++..+++++++.|.-
T Consensus 116 vFWQGPslGwD~GGqgsRvmmLvYnL~~v~aly~Ry~ 152 (205)
T COG5400 116 VFWQGPSLGWDWGGQGSRVMMLVYNLDDVDALYRRYG 152 (205)
T ss_pred eEeeCCccccccCCCceEEEEEEecCCCHHHHHhhcC
Confidence 4555554444444455566789999999999998764
No 194
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=24.90 E-value=2.2e+02 Score=19.09 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=33.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCCCeEe--eceee----cCCe-e------------EEEEEEECCCCCEEEEEe
Q 042945 68 PKDNHISFQCSDMKLVMRKLEEMNIEYE--TAVVD----EGGI-Q------------VDQLFFHDPDGYMIEICN 123 (172)
Q Consensus 68 ~g~~~v~~~v~dl~~~~~~l~~~G~~i~--~~~~~----~~~~-g------------~~~~~~~DPdG~~iei~~ 123 (172)
.+..-+++.+++.+++.+.+.+.|++.. ..+.. ..+. + .+..|+.||+|.++....
T Consensus 63 ~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 63 AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 3456788888888888888887776432 21110 0000 0 134688899998887763
No 195
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.83 E-value=1.3e+02 Score=21.30 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=30.5
Q ss_pred EEEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 74 SFQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 74 ~~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
.+.-.|...+.+.|++.|+++....+-. ...+.++|---+|..+
T Consensus 110 ~IG~rNv~~~~~~L~~~~IpilaeD~Gg--~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 110 KIGERNVEFAKEFLKDEGIPILAEDTGG--DSGRTIEFNPSTGRVR 153 (164)
T ss_pred hhhhHHHHHHHHHHHHcCCcEEEhhhCC--CCCcEEEEecCCCcEE
Confidence 3445699999999999999999865432 2236676665566543
No 196
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=2.5e+02 Score=19.71 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=38.4
Q ss_pred CCcceEEEEeCCHHHHHHHHHhCCCeEe--eceee-------------cCC----eeEEEEEEECCCCCEEEEE
Q 042945 68 PKDNHISFQCSDMKLVMRKLEEMNIEYE--TAVVD-------------EGG----IQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 68 ~g~~~v~~~v~dl~~~~~~l~~~G~~i~--~~~~~-------------~~~----~g~~~~~~~DPdG~~iei~ 122 (172)
.+...++++++++.+..+...++|.++. +.+.. ..+ .-.|+.|+.|++|.+..++
T Consensus 63 ~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 63 LGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 4667899999999998888888876643 21100 000 1246789999999998888
No 197
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=24.80 E-value=1.5e+02 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEE
Q 042945 83 VMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIE 120 (172)
Q Consensus 83 ~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~ie 120 (172)
+...|.+.|+.++--- ...-.|++..-.+|+||+..|
T Consensus 15 ~a~~La~~g~~vt~~e-a~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 15 AAYELADAGYDVTLYE-ARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred HHHHHHhCCCceEEEe-ccCccCceeeeeecCCCCeee
Confidence 4457888898766422 122235588888999999886
No 198
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.78 E-value=2.9e+02 Score=20.32 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=32.3
Q ss_pred EeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 76 QCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 76 ~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
.-.|++.+.+.|.++|+++...- .+|...+.++|.--+|.++--.
T Consensus 113 G~rNie~a~~~L~~~GI~ivaeD--vGG~~gRkI~f~~~tG~v~vk~ 157 (199)
T PRK13491 113 GQANAAFARRYLRDEGIRCTAHS--LGGNRARRIRFWPKTGRVQQMF 157 (199)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEEEEE
Confidence 34589999999999999998754 2333346777777778766433
No 199
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=24.11 E-value=1.2e+02 Score=15.62 Aligned_cols=19 Identities=11% Similarity=0.308 Sum_probs=12.1
Q ss_pred EEEEECCCCCEEEEEeecC
Q 042945 108 QLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 108 ~~~~~DPdG~~iei~~~~~ 126 (172)
.+|.-+..||++|+.....
T Consensus 5 ~~YkC~~CGniVev~~~g~ 23 (36)
T PF06397_consen 5 EFYKCEHCGNIVEVVHDGG 23 (36)
T ss_dssp EEEE-TTT--EEEEEE--S
T ss_pred cEEEccCCCCEEEEEECCC
Confidence 4888999999999998654
No 200
>PLN02536 diaminopimelate epimerase
Probab=23.31 E-value=1.5e+02 Score=22.61 Aligned_cols=57 Identities=7% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCcceEEEEeCC---HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecC
Q 042945 68 PKDNHISFQCSD---MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQN 126 (172)
Q Consensus 68 ~g~~~v~~~v~d---l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~ 126 (172)
.|..|+.+.|+| +++. .+.+.|-.+...+....+.+..++.+.+++...+..+|..-
T Consensus 145 ~GnPH~VifV~~~~~~~~~--~~~~~g~~i~~~~~FP~~~NV~f~~v~~~~~i~~rt~ERGv 204 (267)
T PLN02536 145 MGNPHCVTFGEKELKVDDL--PLEKIGPKFEHHEMFPARTNTEFVQVVSRSHLKMRVWERGA 204 (267)
T ss_pred CCCCCEEEEECCccccCcC--ChHHhChhccccCCCCCCcEEEEEEEcCCCEEEEEEeccCC
Confidence 467899999988 5532 24444555544333334556666777788777777777554
No 201
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.28 E-value=1.8e+02 Score=21.93 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=29.7
Q ss_pred EEeCCHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEE
Q 042945 75 FQCSDMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMI 119 (172)
Q Consensus 75 ~~v~dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~i 119 (172)
+.-.|++.+.+.|.++|+++...- .+|...+.++|.--+|.++
T Consensus 122 IG~RNieaa~~~L~~~gI~IvaeD--vGG~~gRkV~f~~~TG~v~ 164 (233)
T PRK13489 122 IGDRNADFVRRYLALERIRITAED--LQGVHPRKVAFMPRTGRAM 164 (233)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEEe--CCCCCCcEEEEECCCCEEE
Confidence 334589999999999999998754 3333336666665566553
No 202
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.72 E-value=2e+02 Score=17.74 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=30.2
Q ss_pred EeC-CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 76 QCS-DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 76 ~v~-dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
.|+ .+..+.+.|+++|+++...-....-.+...+-+..-+.|...+.
T Consensus 5 AVE~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~ 52 (80)
T PF03698_consen 5 AVEEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQ 52 (80)
T ss_pred EecCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCccccccc
Confidence 444 78899999999999988643222011234566677676665543
No 203
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.61 E-value=1.5e+02 Score=16.40 Aligned_cols=24 Identities=8% Similarity=0.315 Sum_probs=16.9
Q ss_pred eEEEEeC---CHHHHHHHHHhCCCeEe
Q 042945 72 HISFQCS---DMKLVMRKLEEMNIEYE 95 (172)
Q Consensus 72 ~v~~~v~---dl~~~~~~l~~~G~~i~ 95 (172)
++.+.+. +++.+.+.|++.|+++.
T Consensus 46 ~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 46 ELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 4445554 45688999999998764
No 204
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.35 E-value=1.2e+02 Score=17.60 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=15.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhCCEE
Q 042945 7 NHVSFVSKSVEKSVMFYEQVLGFVM 31 (172)
Q Consensus 7 ~hv~l~v~D~~~a~~FY~~~LG~~~ 31 (172)
.++.+.+ -.++..||+. +||+.
T Consensus 58 ~~i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 58 KKIFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp SEEEEEE--EHHHHHHHHH-TTEEE
T ss_pred CcEEEEE--cHHHHHHHHH-CcCCC
Confidence 3454554 3689999999 89863
No 205
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=22.33 E-value=1.7e+02 Score=22.88 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=34.2
Q ss_pred EEEEeC-CHHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEEeecCC
Q 042945 73 ISFQCS-DMKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEICNCQNL 127 (172)
Q Consensus 73 v~~~v~-dl~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~~~~~~ 127 (172)
|+.+|+ .+..+.+-|++..-.+..-|..... + ++..+..++|+.+||.+.+..
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFrpvPh~~d~-a-k~~~fqn~~~y~VefLTtnr~ 214 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFRPVPHRSDP-A-KSSAFQNRDGYRVEFLTTNRG 214 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccccCCccCCC-c-cceeeecCCCeEEEEeccCcC
Confidence 444554 5677777777666555554433222 2 445559999999999986554
No 206
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.21 E-value=1.8e+02 Score=17.09 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=20.7
Q ss_pred ceEEEEe--CCHHHHHHHHHhCCCeEee
Q 042945 71 NHISFQC--SDMKLVMRKLEEMNIEYET 96 (172)
Q Consensus 71 ~~v~~~v--~dl~~~~~~l~~~G~~i~~ 96 (172)
..+++.+ +|.+.+.+.|.++|+.+..
T Consensus 41 CG~al~~~~~d~~~i~~~l~~~~i~~~~ 68 (73)
T PF11823_consen 41 CGLALRFEPEDLEKIKEILEENGIEYEG 68 (73)
T ss_pred CCEEEEEChhhHHHHHHHHHHCCCCeeE
Confidence 4566666 5899999999999988664
No 207
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=21.89 E-value=1.4e+02 Score=22.55 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHhCCCeEeec---eeecCCe-----eEEEEEEECCCCCEE
Q 042945 78 SDMKLVMRKLEEMNIEYETA---VVDEGGI-----QVDQLFFHDPDGYMI 119 (172)
Q Consensus 78 ~dl~~~~~~l~~~G~~i~~~---~~~~~~~-----g~~~~~~~DPdG~~i 119 (172)
++.-+..++|.+.|+++... |..-.++ +...+++.+|||..+
T Consensus 21 ~~~p~~~~~l~~~g~~v~~~~~~p~~l~g~~~~~~~~~~i~Y~t~dg~y~ 70 (251)
T PRK11657 21 EELPAPVKALEKQGITIIKTFDAPGGLKGYAAKYQDMGVTIYLTPDGKHA 70 (251)
T ss_pred hcccHHHHHHHhCCCEEEEeecCCCCceEEEEEeCCCceEEEEcCCCCEE
Confidence 56777889999999998765 2221122 122256778888665
No 208
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=21.58 E-value=3.5e+02 Score=20.63 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCeEeeceeecCCeeEEEEEEECCCCCEEEEE
Q 042945 80 MKLVMRKLEEMNIEYETAVVDEGGIQVDQLFFHDPDGYMIEIC 122 (172)
Q Consensus 80 l~~~~~~l~~~G~~i~~~~~~~~~~g~~~~~~~DPdG~~iei~ 122 (172)
.+++.+..+++|+++. + .....-++|+.||+++.+-+-
T Consensus 150 ~~~i~k~wk~rgi~F~--~---~k~slISV~~h~~d~~~lFvG 187 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFN--N---DKASLISVFLHDPDDNSLFVG 187 (250)
T ss_pred HHHHHHHHHHcCceeC--C---CceEEEEEEEEcCCCCeEEee
Confidence 4456667778899982 2 112346789999988877644
No 209
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=21.54 E-value=60 Score=18.01 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHhhCCE
Q 042945 14 KSVEKSVMFYEQVLGFV 30 (172)
Q Consensus 14 ~D~~~a~~FY~~~LG~~ 30 (172)
+++++..+||+..|..-
T Consensus 23 s~v~~~~dWYk~Mfkqi 39 (50)
T smart00459 23 SSVERPKDWYRTMFKQI 39 (50)
T ss_pred cCcccHHHHHHHHHHHH
Confidence 37889999999988654
No 210
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=21.15 E-value=2.2e+02 Score=24.12 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.4
Q ss_pred EEEECCCCCEEEEEeecCCC
Q 042945 109 LFFHDPDGYMIEICNCQNLP 128 (172)
Q Consensus 109 ~~~~DPdG~~iei~~~~~~~ 128 (172)
+.-.+|||.++|++|...+|
T Consensus 478 ~sg~s~d~~lvEivE~~~hp 497 (533)
T COG0504 478 FSGTSPDGGLVEIVELPDHP 497 (533)
T ss_pred EEEEcCCCCeEEEEEcCCCc
Confidence 44478999999999988875
No 211
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.49 E-value=1.6e+02 Score=18.21 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.1
Q ss_pred cceEEE--EeCCHHHHHHHHHhCCCeEee
Q 042945 70 DNHISF--QCSDMKLVMRKLEEMNIEYET 96 (172)
Q Consensus 70 ~~~v~~--~v~dl~~~~~~l~~~G~~i~~ 96 (172)
..|+-| .+.+++++...|.+.|+++..
T Consensus 50 Sy~V~Fl~~~~s~eev~~ele~mga~in~ 78 (88)
T COG4009 50 SYYVVFLEEVESEEEVERELEDMGAEINR 78 (88)
T ss_pred eEEEEEEeccCCHHHHHHHHHHhCchhcc
Confidence 356666 456999999999999998765
No 212
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=20.29 E-value=1.9e+02 Score=20.01 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=22.0
Q ss_pred eeceEEEEeC-CHHHHHHHHHHhhCCEEeee
Q 042945 5 SLNHVSFVSK-SVEKSVMFYEQVLGFVMIKR 34 (172)
Q Consensus 5 ~i~hv~l~v~-D~~~a~~FY~~~LG~~~~~~ 34 (172)
+++.|.+.|. +-.+|.+||++ +||.....
T Consensus 116 ~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~ 145 (186)
T PRK15130 116 NLYKLYLIVDKENEKAIHIYRK-LGFEVEGE 145 (186)
T ss_pred CceEEEEEEccCCHHHHHHHHH-CCCEEEEE
Confidence 4566777774 45699999999 99988654
No 213
>COG1218 CysQ 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
Probab=20.00 E-value=1.5e+02 Score=23.01 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=19.0
Q ss_pred HHHHHHhC--CCeEeeceeecCC----eeEEEEEEECC-CCC
Q 042945 83 VMRKLEEM--NIEYETAVVDEGG----IQVDQLFFHDP-DGY 117 (172)
Q Consensus 83 ~~~~l~~~--G~~i~~~~~~~~~----~g~~~~~~~DP-dG~ 117 (172)
+.++|++. ++++..+-....+ .....+|+.|| ||.
T Consensus 54 I~~~L~a~~P~ipvv~EE~~~~~~~~~~~~~rfWLiDPLDGT 95 (276)
T COG1218 54 ILEGLRALFPDIPVVSEEEEAIDWEERLHWDRFWLVDPLDGT 95 (276)
T ss_pred HHHHHHHhCCCCCEEEeccccCCCCCcccCceEEEECCCcCc
Confidence 44566665 3655544322111 11245999999 885
Done!