BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042947
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 106/473 (22%), Positives = 195/473 (41%), Gaps = 39/473 (8%)
Query: 31 DSLVSKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLXXXXXXXXX-XXX 89
++ V + KE+ L ++A P + + A M FV AG + +++
Sbjct: 1 ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60
Query: 90 XXFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKL 149
FG +G+ AL + Q GA + H + + + I+ + S +I + +++
Sbjct: 61 ILFG--VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRF 118
Query: 150 IGQPTSVAEQTGIF---AVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVI 206
+ ++A +T + ++ +P +L FQ L+ F T + LL+++
Sbjct: 119 MDVEEAMATKTVGYMHAVIFAVPAYLL--FQ-ALRSFTDGMSLTKPAMVIGFIGLLLNIP 175
Query: 207 VSWVFVYKL----RVGLVGTAITLDFSWWLSVLGLFLYTVCG---GCPLTWTGFSAQAFV 259
++W+FVY +G VG + +W+ +L L Y V + F
Sbjct: 176 LNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPK 235
Query: 260 GLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVD--ALSICVTVFSWESMIPL 317
L F+L L E + V+ ++ + +T VA AL+ VF M P+
Sbjct: 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF----MFPM 291
Query: 318 GFLAATGVRVXXXXXXXXXXXXKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPA 377
AA +RV AA V ++ L + + E++A ++T +
Sbjct: 292 SIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQV 351
Query: 378 VITMVNELAILLAFTILLNCIQPVLTGVAVGS--GWQALVAFVNIG--SYYIVGVPLGVF 433
V+ + + LL F + C+ V VA GS G++ + A + SY+++G+P G
Sbjct: 352 VVALAMQ---LLLFAAIYQCMDAVQV-VAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYI 407
Query: 434 LG---WLLH--FDIRGIWTGMISGTVVQTVILCVITIKCEW-QKEAQKARLHI 480
LG WL +G W G I G ++L + W QK++ +LH+
Sbjct: 408 LGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ---RLYWLQKQSDDVQLHL 457
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 90/450 (20%), Positives = 177/450 (39%), Gaps = 21/450 (4%)
Query: 39 KESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLXXXXXXXXXXXXXXFGFLLGM 98
KE + L +A P + ++ A + FV AG G +L F+ G+
Sbjct: 11 KEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFM-GI 69
Query: 99 ASALETLCGQAYGAKQYHMLG-IYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVA 157
+AL + Q YGA + G Q W L + F +I M+ +P + V
Sbjct: 70 MAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSDYV- 128
Query: 158 EQTGIFAVWLIPFHLCLP---FQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYK 214
G A +++ L +P L + S + +I VS A +++V ++++FVY
Sbjct: 129 --EGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYG 186
Query: 215 L----RVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFK---- 266
+G G + +W S L L++Y + G +A+ W FK
Sbjct: 187 KFGMPALGGAGCGVATMAVFWFSALALWIY-IAKEKFFRPFGLTAKFGKPDWAVFKQIWK 245
Query: 267 LSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVR 326
+ G+ LE + ++ + VA + I ++ + MIP +A VR
Sbjct: 246 IGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGILY--MIPQSVGSAGTVR 303
Query: 327 VXXXXXXXXXXXXKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELA 386
+ ++ + VS+++ ++ + + ++ LA ++ PAV+++ + +
Sbjct: 304 IGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVL 363
Query: 387 ILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIW 446
+ + Q + + G + F++ +++ G+ G L + I G W
Sbjct: 364 LFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFW 423
Query: 447 TGMISGTVVQTVIL--CVITIKCEWQKEAQ 474
T +I+ + V L C+ E K +
Sbjct: 424 TALIASLTIAAVALVWCLEKYSMELVKSHK 453
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 449 MISGTVVQTVILCVITIKCEWQKEAQKARLHILD 482
++SG++ + ++ C+I + +W+ Q HILD
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 449 MISGTVVQTVILCVITIKCEWQKEAQKARLHILD 482
++SG++ + ++ C+I + +W+ Q HILD
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,893,822
Number of Sequences: 62578
Number of extensions: 467475
Number of successful extensions: 947
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 5
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)