Query 042947
Match_columns 487
No_of_seqs 269 out of 2025
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 11:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3.3E-57 7.2E-62 445.7 54.6 436 37-476 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 8.1E-53 1.8E-57 418.6 53.6 433 38-473 25-468 (478)
3 PRK00187 multidrug efflux prot 100.0 4.5E-52 9.7E-57 413.4 56.8 432 36-470 4-447 (464)
4 PRK01766 multidrug efflux prot 100.0 1.5E-49 3.3E-54 396.7 55.6 434 35-471 5-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.5E-49 3.3E-54 394.7 53.0 425 37-466 7-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 3.6E-49 7.7E-54 388.9 54.5 424 37-471 4-434 (441)
7 TIGR01695 mviN integral membra 100.0 8.9E-37 1.9E-41 309.5 51.6 413 44-467 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.5E-36 5.4E-41 305.2 48.7 413 45-466 2-433 (488)
9 KOG1347 Uncharacterized membra 100.0 4.7E-38 1E-42 306.8 34.6 446 38-484 24-469 (473)
10 TIGR00797 matE putative efflux 100.0 8.9E-36 1.9E-40 287.1 42.6 337 50-389 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 7.3E-34 1.6E-38 280.4 47.0 404 44-466 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 2E-29 4.3E-34 249.0 50.3 386 72-467 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 2E-28 4.3E-33 237.1 50.1 419 42-467 7-437 (518)
14 PRK10459 colanic acid exporter 100.0 1E-27 2.2E-32 242.2 47.3 398 41-466 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 2.6E-25 5.6E-30 224.2 42.9 401 40-462 4-406 (480)
16 COG0534 NorM Na+-driven multid 99.9 2.2E-21 4.8E-26 191.6 27.5 208 258-468 13-222 (455)
17 PRK10367 DNA-damage-inducible 99.9 7.3E-21 1.6E-25 187.9 27.8 206 259-466 6-211 (441)
18 PRK00187 multidrug efflux prot 99.9 7.7E-21 1.7E-25 189.5 27.1 207 36-243 230-443 (464)
19 PRK10189 MATE family multidrug 99.9 1.4E-20 2.9E-25 187.8 28.1 204 259-465 26-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 7.2E-21 1.6E-25 189.4 23.9 205 259-466 9-214 (453)
21 PRK01766 multidrug efflux prot 99.9 7.1E-20 1.5E-24 183.1 29.1 208 258-468 8-219 (456)
22 TIGR01695 mviN integral membra 99.8 2.5E-17 5.3E-22 167.3 32.2 206 37-244 218-428 (502)
23 TIGR00797 matE putative efflux 99.8 1.4E-17 3.1E-22 160.4 23.9 194 270-466 1-196 (342)
24 PF01943 Polysacc_synt: Polysa 99.8 8.8E-16 1.9E-20 142.9 33.2 269 45-330 2-272 (273)
25 PF01554 MatE: MatE; InterPro 99.8 1.2E-18 2.7E-23 148.6 6.6 162 270-433 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.7 3E-15 6.5E-20 148.3 30.8 206 37-244 193-403 (451)
27 TIGR02900 spore_V_B stage V sp 99.7 1.5E-15 3.3E-20 153.7 25.0 204 36-244 219-434 (488)
28 PF01554 MatE: MatE; InterPro 99.7 8.6E-18 1.9E-22 143.3 6.0 160 50-210 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 9.9E-14 2.1E-18 135.3 34.5 205 38-244 228-437 (518)
30 PRK10459 colanic acid exporter 99.7 1.4E-13 3.1E-18 139.2 34.5 202 37-244 202-405 (492)
31 PRK15099 O-antigen translocase 99.7 2.5E-14 5.5E-19 141.4 25.5 202 35-243 208-411 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.3E-12 5E-17 118.3 31.3 246 60-329 2-250 (251)
33 COG2244 RfbX Membrane protein 99.6 1.7E-12 3.6E-17 131.1 26.3 187 37-229 208-396 (480)
34 KOG1347 Uncharacterized membra 99.3 3.3E-10 7.2E-15 111.6 20.9 205 258-466 24-229 (473)
35 PF04506 Rft-1: Rft protein; 99.3 4.3E-08 9.3E-13 98.2 33.6 418 46-466 5-469 (549)
36 KOG2864 Nuclear division RFT1 99.1 5.7E-06 1.2E-10 77.8 37.2 413 41-466 7-448 (530)
37 PF07260 ANKH: Progressive ank 99.0 4.9E-06 1.1E-10 74.9 29.1 255 39-302 8-279 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 2.2E-05 4.8E-10 65.2 17.6 79 164-244 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.4 6.6E-05 1.4E-09 75.6 22.1 203 41-244 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.3 0.00032 6.9E-09 64.9 22.6 187 266-466 3-190 (273)
41 PF14667 Polysacc_synt_C: Poly 98.2 1.6E-05 3.4E-10 66.1 9.8 79 386-467 2-80 (146)
42 KOG2864 Nuclear division RFT1 98.0 0.003 6.4E-08 60.1 22.0 199 44-244 241-449 (530)
43 PF13440 Polysacc_synt_3: Poly 98.0 0.003 6.4E-08 57.6 22.3 161 287-465 10-171 (251)
44 PF07260 ANKH: Progressive ank 97.9 0.0064 1.4E-07 55.3 22.1 158 258-422 7-168 (345)
45 COG4267 Predicted membrane pro 97.8 0.029 6.2E-07 52.2 34.5 318 91-436 73-414 (467)
46 COG4267 Predicted membrane pro 79.7 59 0.0013 31.2 20.8 135 315-466 76-210 (467)
47 TIGR00822 EII-Sor PTS system, 68.1 98 0.0021 28.3 15.4 33 312-344 109-141 (265)
48 PF04505 Dispanin: Interferon- 64.8 46 0.001 24.1 6.9 38 319-356 36-73 (82)
49 PF05975 EcsB: Bacterial ABC t 51.1 2.5E+02 0.0053 27.5 17.6 36 335-370 89-124 (386)
50 PF06305 DUF1049: Protein of u 45.4 69 0.0015 22.0 5.1 11 475-485 55-65 (68)
51 PF01914 MarC: MarC family int 30.8 3.6E+02 0.0079 23.5 11.1 59 323-385 20-78 (203)
52 KOG2234 Predicted UDP-galactos 29.6 5.1E+02 0.011 24.8 21.8 50 251-309 79-128 (345)
53 PF07074 TRAP-gamma: Transloco 28.0 3.4E+02 0.0073 22.8 7.0 52 412-466 17-68 (170)
54 PTZ00370 STEVOR; Provisional 27.6 1.4E+02 0.003 27.5 5.1 9 467-475 284-292 (296)
55 PRK01637 hypothetical protein; 25.5 5.4E+02 0.012 23.8 17.3 15 473-487 269-283 (286)
56 PF01102 Glycophorin_A: Glycop 25.3 1E+02 0.0022 24.4 3.5 25 444-468 68-92 (122)
57 PF04235 DUF418: Protein of un 23.4 4.3E+02 0.0093 21.8 14.4 28 335-362 9-36 (163)
58 PRK11111 hypothetical protein; 23.2 5.2E+02 0.011 22.8 8.8 59 324-386 27-85 (214)
59 TIGR00427 membrane protein, Ma 23.1 5.1E+02 0.011 22.6 8.8 60 323-386 23-82 (201)
60 PF03904 DUF334: Domain of unk 22.5 4.7E+02 0.01 23.2 7.2 38 115-152 143-180 (230)
61 PF00558 Vpu: Vpu protein; In 20.7 1.7E+02 0.0038 21.1 3.6 20 461-480 27-46 (81)
62 PRK10739 putative antibiotic t 20.4 5.7E+02 0.012 22.2 10.9 59 323-385 20-78 (197)
63 PF01102 Glycophorin_A: Glycop 20.2 1.4E+02 0.0031 23.6 3.4 25 220-244 67-91 (122)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.3e-57 Score=445.66 Aligned_cols=436 Identities=24% Similarity=0.386 Sum_probs=411.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYH 116 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~ 116 (487)
.++..|+++++++|++++++++.+++++|+.++||+|++++++.+++.++...+ +.+..|++.|.++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 567899999999999999999999999999999999999999999999999865 6799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHH
Q 042947 117 MLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAW 195 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (487)
++++..+++++++++++++.+++ +.+.++++.+++.++|+.+.+..|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777765 89999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcCC--cCccCCCCHHhHhhHHHHHHHHHHH
Q 042947 196 VSGCALLVHVIVSWVFVYK-LR-VGLVGTAITLDFSWWLSVLGLFLYTVCGGC--PLTWTGFSAQAFVGLWEFFKLSVAS 271 (487)
Q Consensus 196 ~~i~~~~~~i~l~~~li~~-~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 271 (487)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.+++. .....+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 46 999999999999999999999999888742 3332334355668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 042947 272 GVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSL 351 (487)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 351 (487)
+++++.+...+...+.+.+++| ++++|+|+++.++.++.++++.+++++..|.+++++|++|+|++++..+.+..+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHH
Q 042947 352 LVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLG 431 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 431 (487)
.++...+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.+|+.||+|.++++++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 042947 432 VFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKA 476 (487)
Q Consensus 432 ~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 476 (487)
+++..++ +|..|+|+++..++.+..++..++++|.+|+++..+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9999877 8999999999999999999999999999998776543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.1e-53 Score=418.56 Aligned_cols=433 Identities=16% Similarity=0.227 Sum_probs=397.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccH
Q 042947 38 WKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHM 117 (487)
Q Consensus 38 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~ 117 (487)
-+..|+++++++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+|+
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34599999999999999999999999999999999999999999999998754 67889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 118 LGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIG--QPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
+++..+.++.+...++++..++ +.+.++++.++. .|+|+.+.+..|+++..++.++..+...+.+++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 9999999999999999887776 778889998884 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhc-C--CcCccCC-CCHHhHhhHHHHHH
Q 042947 195 WVSGCALLVHVIVSWVFVYKL----RVGLVGTAITLDFSWWLSVLGLFLYTVCG-G--CPLTWTG-FSAQAFVGLWEFFK 266 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~~----~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~~ 266 (487)
..+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++ + .+.++++ +.+.+++.+|++++
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHH
Confidence 999999999999999999753 78999999999999999988876666543 1 1222221 11235678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042947 267 LSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVS 346 (487)
Q Consensus 267 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~ 346 (487)
.|+|.+++.........+.+.+++++| +.++|+|+++.++.++..++..+++++..|.+++++|++|++++++..+.+
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~ 341 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHV 341 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999988888888899999 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Q 042947 347 VLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIV 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 426 (487)
.++++.++..++++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+.++|.||++.++++++.+.|++
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v 421 (478)
T PRK10189 342 FWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGC 421 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 042947 427 GVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEA 473 (487)
Q Consensus 427 ~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~ 473 (487)
.+|+.+++....++|+.|+|++..+++.+..++..+++++.+|+++.
T Consensus 422 ~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~ 468 (478)
T PRK10189 422 RVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKY 468 (478)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCC
Confidence 99999999887789999999999999999999999999999998843
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=4.5e-52 Score=413.37 Aligned_cols=432 Identities=21% Similarity=0.279 Sum_probs=391.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 36 KTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 36 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
+++++.|+++++++|.+++++.+.+.+.+|+.+++|+|++++++++++.++.+++ ..+..|++++.++.++|++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3567799999999999999999999999999999999999999999999998865 567889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAW 195 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (487)
|++++.++.++.+..+++++..++..+.++++.+++.|+|+.+.+..|+++..++.++..+....++++|+.|+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999998887777655779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhc----CCccchHHHHHHHHHHHHHHHHHHHHHhcC-C-cCcc-CCCCHHhHhhHHHHHHHH
Q 042947 196 VSGCALLVHVIVSWVFVYKL----RVGLVGTAITLDFSWWLSVLGLFLYTVCGG-C-PLTW-TGFSAQAFVGLWEFFKLS 268 (487)
Q Consensus 196 ~~i~~~~~~i~l~~~li~~~----~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~~~~ 268 (487)
.++++.++|+++|++++++. ++|+.|+++|+.+++....+...+++++++ . +.+. ++..+.+++.+|++++.+
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999753 489999999999999888877666665542 1 1111 122234557899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042947 269 VASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVL 348 (487)
Q Consensus 269 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~ 348 (487)
+|.+++++.+...+.+++.+++++| +++++++++++++..+..++..+++++..+.+++++|++|+|++++..+.+..
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhcccCC--ch---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHH
Q 042947 349 NSLLVGLCFLSIIIATPEKLAKIFTS--SP---AVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSY 423 (487)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 423 (487)
+++.++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.||+|.++++++.+.
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~ 400 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACY 400 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHH
Confidence 99999999999999999999999964 44 67888999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhccHH
Q 042947 424 YIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQ 470 (487)
Q Consensus 424 ~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~ 470 (487)
|++++|+.+++.+.+++|+.|+|+++.+++.+..++...+++.++|+
T Consensus 401 ~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~ 447 (464)
T PRK00187 401 WLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTAR 447 (464)
T ss_pred HHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999988777666444333
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.5e-49 Score=396.74 Aligned_cols=434 Identities=22% Similarity=0.358 Sum_probs=396.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Q 042947 35 SKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQ 114 (487)
Q Consensus 35 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~ 114 (487)
+..++..|+++++++|.+++++...+.+.+|..+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567799999999999999999999999999999999999999999999887644 56788999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHH
Q 042947 115 YHMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVI 193 (487)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (487)
++++++..+.++.+.+.++++.+++ +.+.+++..+++.|+++.+.+..|+++.+++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999887776 667788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh----cCCccchHHHHHHHHHHHHHHHHHHHHHhcC-Cc--CccCCCCHHhHhhHHHHHH
Q 042947 194 AWVSGCALLVHVIVSWVFVYK----LRVGLVGTAITLDFSWWLSVLGLFLYTVCGG-CP--LTWTGFSAQAFVGLWEFFK 266 (487)
Q Consensus 194 ~~~~i~~~~~~i~l~~~li~~----~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 266 (487)
++.++++.++|++++++++++ ..+|+.|+++++.+++.+..++..++.++++ .+ +.+.++.+.+++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 2589999999999999999998887776552 11 1122222345577999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042947 267 LSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVS 346 (487)
Q Consensus 267 ~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~ 346 (487)
.++|.+++...+...+.+.+.+.+++| +.++++++++.++.++..++..+++.+..+.+++++|++|++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999 667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Q 042947 347 VLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIV 426 (487)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 426 (487)
.++++.++++.+++++.+++++.++|++|+|+.+.+..++++..+..++++++....+++++.||++.++++++.+.|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhccHHH
Q 042947 427 GVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQK 471 (487)
Q Consensus 427 ~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~ 471 (487)
++|..+++...+++|+.|+|+++.+++.+..++..+++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887899999999999999999999888887776654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.5e-49 Score=394.67 Aligned_cols=425 Identities=17% Similarity=0.199 Sum_probs=386.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHL-GDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
+++..|+++++++|.+++++...+.+++|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.++|++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 345689999999999999999999999999999996 999999999999998754 567889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
|++++..+.++.+..+++++..++ ..+.++++.+++.|+++.+.+.+|+++..++.++..+.....+.+|+.|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999888776 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccC-CCCHHhHhhHHHHHHHHHHHHH
Q 042947 195 WVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWT-GFSAQAFVGLWEFFKLSVASGV 273 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~l 273 (487)
..++.+.++|+++++++++.+++|+.|+++|+.+++.+..++..+++++++.+.+++ +..+.+++.+|++++.|.|.++
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHH
Confidence 999999999999999999888899999999999999999998877776552222221 1112345778999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 042947 274 MLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLV 353 (487)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 353 (487)
+.........+.+.+.+++|+ +.++|+++++.++..+..++..+++++..|.+++++|+||+|++++..+.+.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999998888888889885 4578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhcccCC-chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHH
Q 042947 354 GLCFLSIIIATPEKLAKIFTS-SPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGV 432 (487)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~ 432 (487)
+++.+++++.+++++.++|++ |+|+.+.+..++++.+++.++++++.+..+.+++.||++.++.+++... .+++|+.+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHH
Confidence 999999999999999999995 7889999999999999999999999999999999999999999998765 78999999
Q ss_pred HHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 433 FLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 433 ~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
++... +|+.|+|+++.+++.+..++...++++
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 98765 799999999999999988887766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.6e-49 Score=388.89 Aligned_cols=424 Identities=16% Similarity=0.188 Sum_probs=370.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHL-GDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
-+++.|+++++++|.++++++..+.+.+|+.++||+ |++++++++++.++.+.. ..+..|++.+.++.++|++|+||+
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 82 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNP 82 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 356689999999999999999999999999999998 778999999999998865 568889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
|++++..++++.+.++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+...+.+++|+.||++.++
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 83 QALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999998877765 6788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCc-CccCCCCHHhHhhHHHHHHHHHHHH
Q 042947 195 WVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG-GCP-LTWTGFSAQAFVGLWEFFKLSVASG 272 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~p~~ 272 (487)
..++++.++|+++++++++++++|+.|+++|+.+++.+..++..++++++ +.+ .+.+.++....+.+|++++.|.|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 99999999999999999998899999999999999999988877776654 211 1111111111246899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 042947 273 VMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLL 352 (487)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 352 (487)
+++..+...+.+.+.+++++| +.++|+|+++.++.++.+++..+++++..|.+++++|++|+|++|+..+++.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC---chhhHHHHHHHHHHHHhHH
Q 042947 353 VGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSG---WQALVAFVNIGSYYIVGVP 429 (487)
Q Consensus 353 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~ 429 (487)
++.+++++++++++++..+|++|+|+.+.+..++++.++..+......+..+++++.+ |++.++++++++.|+..+
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~- 399 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999998876443334444444555555 599999999998764222
Q ss_pred HHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhccHHH
Q 042947 430 LGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKCEWQK 471 (487)
Q Consensus 430 l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~ 471 (487)
..+. +|+.|+|++..+++.+..++...+++|. ||+
T Consensus 400 ----~~~~--~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 400 ----TLPW--LGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred ----HHHH--cCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 2223 7999999999999999998888766554 743
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=8.9e-37 Score=309.51 Aligned_cols=413 Identities=14% Similarity=0.103 Sum_probs=346.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhccccccHHHH
Q 042947 44 LWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNL-AAISIATTVIISISFGFL-LGMASALETLCGQAYGAKQYHMLGI 120 (487)
Q Consensus 44 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~g~~~a~~~~~s~~~~~~~~~~~~~ 120 (487)
+.|.+.-..++++++.+.+++|..+++| +|++++ ++++++.++.+.+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4677888899999999999999999999 699999 899999999875533223 467888777766554322 56776
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHhhHHHHHHc--CCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHH
Q 042947 121 YMQRSWIVLFICS-FLLIPM-FVFASPLLKLI--GQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWV 196 (487)
Q Consensus 121 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (487)
.+..+.......+ ++..++ +.+.+++..++ +.+++..+.+..|++++.++.++..+....++++|+.||++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6766666555444 344444 66777777777 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCccchHH--HHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHH
Q 042947 197 SGCALLVHVIVSWVFVYKLRVGLVGTA--ITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVM 274 (487)
Q Consensus 197 ~i~~~~~~i~l~~~li~~~~~gi~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 274 (487)
+++..+++++...++. .++|..|++ ++++++..+..++.+++.+|++.+.+. ++ ..+++.+|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RF-NFRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cC-CCCChhHHHHHHHHHHHHHH
Confidence 9999888776544443 478999988 999999999988887776655322111 11 12346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 042947 275 LLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESM-IPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLV 353 (487)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 353 (487)
+....+...+++.+.+.++ +.++++|+.++++.++... +..+++++..|.++++++++|+++.++..+++.++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877777 5678899999999988765 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhcccCC----chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHH
Q 042947 354 GLCFLSIIIATPEKLAKIFTS----SPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVP 429 (487)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 429 (487)
+.|+++++.++++++.++|.+ |+|..+.+..++++++++.++.+++.+..+.+++.||+|.+++.+..+. +++++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~ 392 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNAL 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHH
Confidence 999999999999999999876 5577888999999999999999999999999999999999999999987 88999
Q ss_pred HHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhc
Q 042947 430 LGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKC 467 (487)
Q Consensus 430 l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 467 (487)
+++++.+. +|..|+|+++.+++.+..++..++.+|+
T Consensus 393 l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 393 LSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988876 8999999999999999988887777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.5e-36 Score=305.23 Aligned_cols=413 Identities=14% Similarity=0.175 Sum_probs=346.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHHHHH
Q 042947 45 WQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQ 123 (487)
Q Consensus 45 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~ 123 (487)
.|.+.|.+++++...+.+++|..+++| +|++++|+++.+.++..++......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 5999999999999998866444456999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 042947 124 RSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALL 202 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 202 (487)
.++++.+..+++..++ ..+.+++...+.++++. ..++++..+..++..+.....+.+|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999998887776 56666666666555543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh-----cCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCcCc--cCCCCHHhHhhHHHHHHHHHHHHHH
Q 042947 203 VHVIVSWVFVYK-----LRVGLVGTAITLDFSWWLSVLGLFLYTVCG-GCPLT--WTGFSAQAFVGLWEFFKLSVASGVM 274 (487)
Q Consensus 203 ~~i~l~~~li~~-----~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~p~~l~ 274 (487)
+++.++..++.. .++|+.|+++++.++..+..++.+++.+++ +.+.+ +.+..+.+++.+|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776555432 246788888999999999988877665544 21211 1112233456899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042947 275 LLLENIYYRVLIIVSGYMHN-----TE---VAVDAL-SICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIV 345 (487)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~ 345 (487)
++.......+++.++++... .. ...+.| +++.++.++...+..+++++..|.++++.|++|+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888765421 01 223333 4566788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 042947 346 SVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYI 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 425 (487)
..+++..++.|.++++..+++++..++.++++ +..+++++++..++..++....+++++.||+|..++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999876543 678899999999999999999999999999999999999987 8
Q ss_pred HhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 426 VGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 426 ~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
+++++++.+...+.+|+.|+|+++.+++.+..++..++.+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988873334899999999999999999998887766
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=4.7e-38 Score=306.80 Aligned_cols=446 Identities=39% Similarity=0.722 Sum_probs=425.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccH
Q 042947 38 WKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHM 117 (487)
Q Consensus 38 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~ 117 (487)
+.+.|++++++.|+++..+.+.+...++..++||+|+.++++.+++.+..+.....+..|+.++..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 78899999999999999999999999999999999999999999999999987788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHH
Q 042947 118 LGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVS 197 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 197 (487)
...+.+++.......+++...++.+.++++..+++++++...+..|.++.++..+.+........++++++++....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHH
Q 042947 198 GCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLL 277 (487)
Q Consensus 198 i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 277 (487)
....++++++++++++..++|..|++++..+++.........|.........|..+..+ ++.++++++.++|..++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999988888766666777777777 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 042947 278 ENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCF 357 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (487)
+.+.+.+..+..+.+++...++++.++..++....++++.+++.+...++++.+|+++++++|...+.+...++..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHh
Q 042947 358 LSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWL 437 (487)
Q Consensus 358 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 437 (487)
+..++...+.+..+|++|+|+.+......+++++..++++.+.+..+..++.|+++...++++...+++++|+...+...
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~ 422 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFF 422 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhh
Q 042947 438 LHFDIRGIWTGMISGTVVQTVILCVITIKCEWQKEAQKARLHILDEV 484 (487)
Q Consensus 438 ~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
.++|..|.|.++..+..+..........+.+|+++..+++++.....
T Consensus 423 ~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~ 469 (473)
T KOG1347|consen 423 TKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASL 469 (473)
T ss_pred EecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhc
Confidence 88999999999999988888888888888999999999887766543
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=8.9e-36 Score=287.12 Aligned_cols=337 Identities=29% Similarity=0.485 Sum_probs=305.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHHHHHHHHHHH
Q 042947 50 PSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVL 129 (487)
Q Consensus 50 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 129 (487)
|.+++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++++..+.++|+.|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999887754 55888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Q 042947 130 FICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVS 208 (487)
Q Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~ 208 (487)
..++++.+++ ..+.+++..+++.+++..+++..+++++.+..++..+..+..+.+++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888776 778888888888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh-hcC-CccchHHHHHHHHHHHHHHHHHHHHHhc-CCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042947 209 WVFVY-KLR-VGLVGTAITLDFSWWLSVLGLFLYTVCG-GCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVL 285 (487)
Q Consensus 209 ~~li~-~~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~ 285 (487)
++++. .++ +|+.|+++++.+++++..++..++.+|+ +.+.++++..+.+++..|++++++.|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 88887 556 8899999999999999999887777653 33333222233345789999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042947 286 IIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATP 365 (487)
Q Consensus 286 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
+.+++++| +.++++|+++.++.++..+++.+++++..|.++++++++|+++.++..+++.++.+.++++..+++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 6778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCchHHHHHHHHHHHHH
Q 042947 366 EKLAKIFTSSPAVITMVNELAILL 389 (487)
Q Consensus 366 ~~i~~l~~~~~~~~~~~~~~l~i~ 389 (487)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=7.3e-34 Score=280.44 Aligned_cols=404 Identities=11% Similarity=0.014 Sum_probs=338.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHHHH
Q 042947 44 LWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYM 122 (487)
Q Consensus 44 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~ 122 (487)
+.|.+.....+++...+.+++...+++| +|++++|.++...++...+......|++++.++.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677888899999999999999999999 59999999999999888665545788888888999988 57888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHH
Q 042947 123 QRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCAL 201 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 201 (487)
++++.+.+..+++.+++ +.+.+++...+..+++. ..++.+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887776 77888888777766652 23456666666677778899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHH
Q 042947 202 LVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG-GCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENI 280 (487)
Q Consensus 202 ~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~ 280 (487)
++|+.+ +++... ..|+.|+++|+++++.+..+...++++|+ +.+.+..++ +.+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444432 24999999999999999887776666554 211111111 22457789999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 042947 281 YYRVLIIVSG-YMHNTEVAVDALSICVTVFSW-ESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFL 358 (487)
Q Consensus 281 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (487)
....++.+++ .+| ++++|.|+++.|+.+. ...+..+++++..|.++++ +|+++.++..++..+....++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988886 777 6789999999999774 5789999999999999995 6788999999999999999999999
Q ss_pred HHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHhh
Q 042947 359 SIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLL 438 (487)
Q Consensus 359 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~ 438 (487)
++++++++++++++.+|+ ++++.+++++++++.++...+......+.+.++++.....++... ++++++++++.+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 999999999999999876 666889999999999999888888777778888888777777755 8999999999988
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 439 HFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 439 ~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
+|..|+++++.+++.+..++..+...+
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998877765543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=2e-29 Score=248.96 Aligned_cols=386 Identities=14% Similarity=0.144 Sum_probs=334.8
Q ss_pred cChh-hHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 042947 72 LGDL-NLAAISIATTVIISISFGFL-LGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLK 148 (487)
Q Consensus 72 lg~~-~~~~~~~~~~i~~~~~~~~~-~g~~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 148 (487)
+|+. +..++.++.++.+++...+. .+++++..|...+.. ++++|+.++..+..........+.++++ +++.+++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5664 46689999999987644343 458999999999998 7888999999998888888777777776 778888888
Q ss_pred Hc--CCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhhhhcCCc---cchHH
Q 042947 149 LI--GQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVG---LVGTA 223 (487)
Q Consensus 149 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---i~g~~ 223 (487)
.+ +.+++..+.+...+++..+..++.++..++.+++++++|+..+....++.++..++...++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 77 456788899999999999999999999999999999999999999999988776654433333 466 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 042947 224 ITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALS 303 (487)
Q Consensus 224 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 303 (487)
+|..++..+..++.....+|.+.+.+++ +++++ +..|++++...|..+.....++...+++.+.+.++ +.++++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l~ 237 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK-FDWRD-PNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSALN 237 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc-CCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHHH
Confidence 9999999999999888888764442222 12222 56899999999999999999999999999999998 56688999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCC----chHH
Q 042947 304 ICVTVFSWESM-IPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTS----SPAV 378 (487)
Q Consensus 304 ~~~~i~~~~~~-~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~ 378 (487)
.++++.+++.. +..+++++..|.+++...++|.++.++..+++++....+.+|++++++.+++++++++.. |+|.
T Consensus 238 YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~ 317 (451)
T PF03023_consen 238 YAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAED 317 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHH
Confidence 99999999874 577999999999999999999999999999999999999999999999999999998752 6677
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHH
Q 042947 379 ITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTV 458 (487)
Q Consensus 379 ~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~ 458 (487)
.+.....+.+++++.++.+++......+++.||+|.++++++.+. ++++.+++++.+. +|..|+++++.++..+..+
T Consensus 318 ~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~ 394 (451)
T PF03023_consen 318 TQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISAL 394 (451)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999988 8999999888888 9999999999999999998
Q ss_pred HHHHHHhhc
Q 042947 459 ILCVITIKC 467 (487)
Q Consensus 459 ~~~~~~~~~ 467 (487)
+.....+|+
T Consensus 395 ~l~~~l~r~ 403 (451)
T PF03023_consen 395 LLYILLRRR 403 (451)
T ss_pred HHHHHHHHH
Confidence 888877765
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=2e-28 Score=237.13 Aligned_cols=419 Identities=13% Similarity=0.080 Sum_probs=351.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChh-hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHhhhccccccHH
Q 042947 42 KKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDL-NLAAISIATTVIISISFGFLLG-MASALETLCGQAYGAKQYHML 118 (487)
Q Consensus 42 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~-~~~~~~~~~~i~~~~~~~~~~g-~~~a~~~~~s~~~~~~~~~~~ 118 (487)
+.++|.++-....++++.+.+++-..+++. +|+. ...++.++..+.+.+--.+..| ++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 456667777778888888999998888888 5884 5678999999999775544444 789999999999887777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--ChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 119 GIYMQRSWIVLFICSFLLIPM-FVFASPLLKLI-GQ--PTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
++..+........+.+.++++ ..+.+.+.... .. +++....+....+++.+..++.++.....+.+++.+|+..+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 877777776666666677766 56666666344 33 233333578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHH
Q 042947 195 WVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVM 274 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 274 (487)
+..+..++.-+.....+.........+.+++..++-+.+.++.+..++|.+...+++ +..++ +..|++.+...|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CCCCc-hhHHHHHHHHHHHHHH
Confidence 999999888775655555433334778899999999999999999998874333222 12222 6789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 042947 275 LLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWES-MIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLV 353 (487)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 353 (487)
....++...+++.+.+.+. +.+++.++.++++.+++. .+..+++++..|.+|++..++|.++.++..+.+++.++++
T Consensus 245 ~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 455779999999999998 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhcccCC----chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHH
Q 042947 354 GLCFLSIIIATPEKLAKIFTS----SPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVP 429 (487)
Q Consensus 354 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 429 (487)
++|.++++.++++++.+++.. +++......+.+..++++.++..+..+....+++.+|+|.++++.+++. ++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHH
Confidence 999999999999999988743 4566888999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhhc
Q 042947 430 LGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIKC 467 (487)
Q Consensus 430 l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~ 467 (487)
+++.+... +|..|.+.+..++..+...+.++..+|+
T Consensus 402 l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 402 LNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99877777 8899999999999988888887777664
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=1e-27 Score=242.17 Aligned_cols=398 Identities=11% Similarity=0.095 Sum_probs=318.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHH
Q 042947 41 SKKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLG 119 (487)
Q Consensus 41 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~ 119 (487)
.|+..+.+.+..+++......+++...+++| +||+++|.++.+..+.+++......|++++.. |. +|++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 4667788888999999999999999999999 59999999999999998776556677777642 22 1111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHH
Q 042947 120 IYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSG 198 (487)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 198 (487)
+.....+++....++++.++ +.+.+++...+ ++++. ...+++..+..++..+.....+.++..++.+.....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455566666666666555 44444444444 34432 34567777888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHHH
Q 042947 199 CALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLE 278 (487)
Q Consensus 199 ~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~ 278 (487)
...++..++.+.+.. .++|+.+..++..++..+..+......++ ++++++ ..+++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~----~~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL----HFSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc----eecHHHHHHHHhhhHHHHHHHHHH
Confidence 888887777666554 47899999999999988877655433322 222221 112367899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 042947 279 NIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESM-IPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCF 357 (487)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (487)
.+..+.++.+++++.+ ++++|.|+.+.++.+.+.. +...++++..|.+++. ++|.++.++.+++..++...+++|+
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887765 6779999999999887654 4556788999999885 5788999999999999999999999
Q ss_pred HHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHh
Q 042947 358 LSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWL 437 (487)
Q Consensus 358 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 437 (487)
.+++.++++++..++.+|+ +..+...++++++..++..........+++.||+|..++.+++.. ++.+|..+.+...
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~~ 377 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHhh
Confidence 9999999999998887765 778899999999999999999999999999999999999998887 7888887777766
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 438 LHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 438 ~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
+|+.|+++++.+++.+...+..+...|
T Consensus 378 --~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 378 --AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988777776634
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=2.6e-25 Score=224.22 Aligned_cols=401 Identities=14% Similarity=0.122 Sum_probs=311.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHH
Q 042947 40 ESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHML 118 (487)
Q Consensus 40 ~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~ 118 (487)
..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++.+++......|++.+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 45788889999999999999999999999999 69999999999999999887766789999999999988765555554
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHH
Q 042947 119 GIY-MQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVS 197 (487)
Q Consensus 119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 197 (487)
... ...........+++.........+. ++ .....+++..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 4444443333333333322222221 11 233456788899999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHH
Q 042947 198 GCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLL 277 (487)
Q Consensus 198 i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 277 (487)
+.. ..-......+. ........++..++..........+..+++.+...... ...++..|+.+++++|..+.+..
T Consensus 154 ~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 154 VSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHH
Confidence 444 11112222222 13444555666666666555555554322111111111 11357899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 042947 278 ENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCF 357 (487)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (487)
..+..+.|+++++++-+ ++++|.|+.++++......+..+++.+..|.+++...++|.++.++..++..++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHh
Q 042947 358 LSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWL 437 (487)
Q Consensus 358 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~ 437 (487)
.+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++.+.++. +.++.+++.+.+.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHh
Confidence 9999999999999888765 555899999999999999999999999999999999999999988 8999999999888
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHH
Q 042947 438 LHFDIRGIWTGMISGTVVQTVILCV 462 (487)
Q Consensus 438 ~~~g~~G~~~a~~~~~~i~~~~~~~ 462 (487)
+|..|+..++ .+.........+
T Consensus 385 --~g~~g~~~a~-~~~~~~~~~~~~ 406 (480)
T COG2244 385 --FGLIGAAIAT-ASVIALALLLFY 406 (480)
T ss_pred --hhhhhHHHHH-HHHHHHHHHHHH
Confidence 8999999998 443333333333
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=2.2e-21 Score=191.62 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=199.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 042947 258 FVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNAN 337 (487)
Q Consensus 258 ~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 337 (487)
++..|+++++++|..+.++.....+.+|+.++++++ ++++|+-++++++..+...+..+++.+..+.++|.+|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 367899999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHH
Q 042947 338 GAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAF 417 (487)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 417 (487)
++++..+.+...+++++++..++.+.+++++..++++++|+.+.+.+|+++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHh-hc-CCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 042947 418 VNIGSYYIVGVPLGVFLGWL-LH-FDIRGIWTGMISGTVVQTVILCVITIKCE 468 (487)
Q Consensus 418 ~~~~~~~~~~i~l~~~l~~~-~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 468 (487)
+++++. ++|+.+++++.+. ++ +|+.|+++|+.+++.+..++..++..|++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998 9999999999987 56 99999999999999999999988887765
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=7.3e-21 Score=187.94 Aligned_cols=206 Identities=17% Similarity=0.131 Sum_probs=192.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 042947 259 VGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANG 338 (487)
Q Consensus 259 ~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~ 338 (487)
+..|++++.++|..+++++......+++.+++++++ +.++|+.+++.++.++...+..+++.+..+.++|++|++|+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 557899999999999999999999999999999854 6678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHH
Q 042947 339 AKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFV 418 (487)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 418 (487)
+++..+.++.++.+++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+......++++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 419 NIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 419 ~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
++++. ++++++++++.+.+++|+.|+++++.+++.+..++..++++|
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 899999999988778999999999999999988776665554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=7.7e-21 Score=189.51 Aligned_cols=207 Identities=16% Similarity=0.168 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 36 KTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 36 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
.+++..|++++.++|.+++++++.....+|..+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4567799999999999999999999999999999999999999999999998854 668899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--Ch---HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccc
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQ--PT---SVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLK 189 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (487)
|++++..+.++.++...+++..++ +.+.+++.+++.. ++ |+.+.+..|+++..++.++..+..++.+.+|+.|+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999877776 7788888888853 33 68889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 042947 190 TAVIAWVSGCAL-LVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVC 243 (487)
Q Consensus 190 ~~~~~~~~i~~~-~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 243 (487)
++.++..++++. ++++++++++.+.+++|+.|+++++.+++.+..++....+++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 899999999998778999999999999999998877666543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=1.4e-20 Score=187.81 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 042947 259 VGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANG 338 (487)
Q Consensus 259 ~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~ 338 (487)
+..|++++.++|.+++++.......+++.+++++| ++++|+++++.++..+...+..+++++..+.++|++|++|+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 56899999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccC--CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHH
Q 042947 339 AKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFT--SSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVA 416 (487)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 416 (487)
+++..+.+..+++.++++.+++.+.+++++..++. .|+|+.+.+.+++++..++.++..+.....+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHh----hcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 042947 417 FVNIGSYYIVGVPLGVFLGWL----LHFDIRGIWTGMISGTVVQTVILCVITI 465 (487)
Q Consensus 417 ~~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 465 (487)
++++.+. ++++++.+.+... +++|+.|+|+++.+++.+..++..+++.
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999866 8999999888753 3689999999999999998877655544
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=7.2e-21 Score=189.40 Aligned_cols=205 Identities=15% Similarity=0.117 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 042947 259 VGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYM-HNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNAN 337 (487)
Q Consensus 259 ~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 337 (487)
+..|++++.++|..++++.......+++.+++++ | +++++++++++++.++...+..+++.+..+.+++++|++|+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 5679999999999999999999999999999997 6 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHH
Q 042947 338 GAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAF 417 (487)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 417 (487)
++++..+.+..++..+++++++++..+++++..+++.|+++.+.+.+++++..++.++..+.....+++++.||++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 418 VNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 418 ~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
.++.+. ++++++++++...+++|+.|+++++.+++.+..++..+++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999987 899999999998778999999999999999998887666554
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=7.1e-20 Score=183.13 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=192.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 042947 258 FVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNAN 337 (487)
Q Consensus 258 ~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~ 337 (487)
++.+|+++++++|..++++.......+++.+++++| ++++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 467999999999999999999999999999999998 667889999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHH
Q 042947 338 GAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAF 417 (487)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 417 (487)
++++..+.+..+++.++++++++++.+++++..+++.|+++.+.+..++++.+++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHh----hcCCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 042947 418 VNIGSYYIVGVPLGVFLGWL----LHFDIRGIWTGMISGTVVQTVILCVITIKCE 468 (487)
Q Consensus 418 ~~~~~~~~~~i~l~~~l~~~----~~~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 468 (487)
.++++. ++++++++++... +++|+.|+++++.+++.+..++..++.+|++
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999987 8899999888742 3589999999999999999888877665543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=2.5e-17 Score=167.32 Aligned_cols=206 Identities=14% Similarity=0.102 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYH 116 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~ 116 (487)
+++..|++++.+.|..++++...+...+|+.+.+.+|++++++++.+.++.+.....+..+++++..|.++|+.+++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45678999999999999999999999999988666799999999999999875433356789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchh
Q 042947 117 MLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQ----PTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTA 191 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (487)
+.++.++++......++++.+++ ..+.+++..++.+ ++|..+.+..++++.+++.++.++.....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999888886 7888999887765 456788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 192 VIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 192 ~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
.+++.++...++|++++++++. .+|..|+++++.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998876 58999999999999999999888777654
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.80 E-value=1.4e-17 Score=160.36 Aligned_cols=194 Identities=21% Similarity=0.213 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 042947 270 ASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLN 349 (487)
Q Consensus 270 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 349 (487)
|.+++++...+...+++.+++++| ++++++|+.+.++..+...+..+++++..|.++++.|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999998 667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHH
Q 042947 350 SLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVP 429 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 429 (487)
...++++.+++++++++++.++++.|++..+.+..++++++++.++.++.....+.+++.||++...+.++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999987 78888
Q ss_pred HHHHHHH-hhc-CCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 430 LGVFLGW-LLH-FDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 430 l~~~l~~-~~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
+.+++.. .++ +|+.|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877 656 779999999999999988887766665
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.79 E-value=8.8e-16 Score=142.88 Aligned_cols=269 Identities=17% Similarity=0.177 Sum_probs=204.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHHHHH
Q 042947 45 WQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQ 123 (487)
Q Consensus 45 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~ 123 (487)
.|.+.....+++.....+++...+++| +|++++|.++...++.+++......|++++..+..+++..+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567778889999999999999999999 59999999999999998776656889999998888877443 344444554
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHh-hhHHHHHHHHHHHHHccchhHHHHHHHHHHH
Q 042947 124 RSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFH-LCLPFQFTLQRFLQSQLKTAVIAWVSGCALL 202 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 202 (487)
.......+.+++......... ....++. .. . ..+..... +..........++++.++.+.....++...+
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNPSL-SL---I-LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCchH-HH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333222212 3333322 11 1 22222222 5677888889999999999999999999998
Q ss_pred HHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042947 203 VHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYY 282 (487)
Q Consensus 203 ~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~ 282 (487)
...++...+... +.+..+..++..++..+...+..++.+|+. +.+ .+..+++..|++++++.|..+.++...+..
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc---ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666653 445889999999999999888887777652 111 222235789999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042947 283 RVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANE 330 (487)
Q Consensus 283 ~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~ 330 (487)
..+..+++++.+ .+++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998876 67799999999999999999999999999999975
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=1.2e-18 Score=148.56 Aligned_cols=162 Identities=25% Similarity=0.436 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 042947 270 ASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSVLN 349 (487)
Q Consensus 270 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~ 349 (487)
|.+++++++...+.+++.+++++| ++++++++++.++.++..++..+++++..+.+++++|++|++++++..+.+..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999997 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHH
Q 042947 350 SLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVP 429 (487)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 429 (487)
+..++++.++...++++++..+|++|+|+.+.+.+++++..++.++.++.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 042947 430 LGVF 433 (487)
Q Consensus 430 l~~~ 433 (487)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=3e-15 Score=148.26 Aligned_cols=206 Identities=15% Similarity=0.128 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYH 116 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~ 116 (487)
..+..|++++...|..++....++...+|+.+.+++++..+++++.+.++.+.....+...+++...|..++...++|.+
T Consensus 193 ~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~ 272 (451)
T PF03023_consen 193 RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWE 272 (451)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34558999999999999999999999999999999999999999999999997655677789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchh
Q 042947 117 MLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIG----QPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTA 191 (487)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 191 (487)
+.++..++.+.....+.++.++. ..++++++.++. -++|-.+.....++++++++++.++...+...+.+++|+|
T Consensus 273 ~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~ 352 (451)
T PF03023_consen 273 EFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTK 352 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcH
Confidence 99999999999999999999886 788999987664 2456677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 192 VIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 192 ~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
.+...++++.++|++++.++.. .+|..|.++++.++..+..++.++.++|+
T Consensus 353 ~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 353 TPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887 78999999999999999999998888776
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.72 E-value=1.5e-15 Score=153.73 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-Chh------hHHHH----HHHHHHHHHHHHHHHHHHHHhHHH
Q 042947 36 KTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHL-GDL------NLAAI----SIATTVIISISFGFLLGMASALET 104 (487)
Q Consensus 36 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~------~~~~~----~~~~~i~~~~~~~~~~g~~~a~~~ 104 (487)
.+++..|+++++++|..++++...+.+.+|+.++++. ++. +.+.+ +.+.++.... ..+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 3466889999999999999999999999999999873 321 22222 2444555544 4467789999999
Q ss_pred HHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Q 042947 105 LCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRF 183 (487)
Q Consensus 105 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 183 (487)
.++|+.|++|+++.++..++...+...++.+.+++ ..+.++++.++..++ ++.++++++++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776 778888888776543 3567899999999999999999999
Q ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 184 LQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 184 l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
+++.||+|.+++.+++..++|++++++++....+|+.|+++++.+++.+..++..++.+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888743478999999999999999999888777653
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=8.6e-18 Score=143.33 Aligned_cols=160 Identities=21% Similarity=0.349 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHHHHHHHHHHH
Q 042947 50 PSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVL 129 (487)
Q Consensus 50 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 129 (487)
|.++++++..+...+|..+++++|++++++++++.++.++. ..+..|++.|..+.++|++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999865 55889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHH-HHHHHH
Q 042947 130 FICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCAL-LVHVIV 207 (487)
Q Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~l 207 (487)
..++++..++ ..+.+++..+++.|+|+.+.+..|+++..+..++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999887 78888889999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHH
Q 042947 208 SWV 210 (487)
Q Consensus 208 ~~~ 210 (487)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.71 E-value=9.9e-14 Score=135.34 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccH
Q 042947 38 WKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHM 117 (487)
Q Consensus 38 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~ 117 (487)
.+..|++.+...|+.++...+++...+|+.+.+.+.+...+.+.++..+.++..-.+..++++...|..||+..++|.++
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~ 307 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPE 307 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHH
Confidence 36789999999999999999999999999999999999999999999999976556888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhH
Q 042947 118 LGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQ----PTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAV 192 (487)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (487)
.++..+.++.+..++.++.++. ..+++|+...+.. +++-...+...++.+.++.++..+..++...+.+++++|.
T Consensus 308 ~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~kt 387 (518)
T COG0728 308 FLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKT 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCc
Confidence 9999999999999999999987 7899999976632 3444566778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 193 IAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 193 ~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
|++..+++.++|+.+++.+.. .+|..|.++++.++.++.+.+.++..+|+
T Consensus 388 P~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 388 PMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999966665 67888999999999999998888888776
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.69 E-value=1.4e-13 Score=139.23 Aligned_cols=202 Identities=11% Similarity=0.036 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHL-GDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
+++..|++++++.|...+++...+...+|+.+++++ |++++|.|+.+.++.+.....+...++....|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 356689999999999999999999999999999995 9999999999999987543434445677788888875 5677
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
++.++.+++.......++++..++ ..++++++.++.+++ +..+...++++++...+..........+++.||+|...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 888999999999988888888776 778889887776544 56688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 195 WVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
..+++..+++++..+.+.. .+|+.|+++++.+++.+...+..++..|+
T Consensus 358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888877666664 67999999999999999888887777543
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.67 E-value=2.5e-14 Score=141.39 Aligned_cols=202 Identities=4% Similarity=-0.087 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccc
Q 042947 35 SKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAG-HLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAK 113 (487)
Q Consensus 35 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~ 113 (487)
+.+++..|++++++.|..++++...+....|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.+++. +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 345677899999999999999999999999999997 579999999999999977443557889999999999985 5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhH
Q 042947 114 QYHMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAV 192 (487)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (487)
|+++.++..++.......++++..++ .+++++++.++.+++ .+.+..++++++++.++..........+..+++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888989888888888777765 688899988887654 344677888988888888877777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 042947 193 IAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVC 243 (487)
Q Consensus 193 ~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 243 (487)
.....+...+++++++++++. .+|..|+++++.+++.+...+..+...+
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888898888999999999886 6899999999999999999877765543
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.62 E-value=2.3e-12 Score=118.30 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=176.2
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Q 042947 60 SMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIP 138 (487)
Q Consensus 60 ~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (487)
..+++-..+++| +|++++|.++...++..++......|+.....+ . .++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 699999999999999987655445666666444 2 3355556666666655544444433333
Q ss_pred HHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q 042947 139 MFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVG 218 (487)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~g 218 (487)
+. ..+...+ .+++ ...++....+..+.........+.+++++|.+..........++...+...+.. .+.+
T Consensus 77 ~~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 LA---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HH---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 21 1111223 3332 223455666778888889999999999999999999999999888544444443 3448
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHH
Q 042947 219 LVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGY-MHNTEV 297 (487)
Q Consensus 219 i~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 297 (487)
..+..++..++..+..++.+...+++ .+ ..+ +.+..| .++.+.|..+.++......+.+..+++. +| .+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK-LR--LSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cC--CCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HH
Confidence 88899998888888877666533322 11 111 112234 7899999999999999999999999998 64 77
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 042947 298 AVDALSICVTVFSWES-MIPLGFLAATGVRVAN 329 (487)
Q Consensus 298 ~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~ 329 (487)
++|.|+++.++...+. .+..++++...|.++|
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999888 9999999999999986
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.56 E-value=1.7e-12 Score=131.14 Aligned_cols=187 Identities=20% Similarity=0.237 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 37 TWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 37 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
.++..|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 47889999999999999999999999999999999 5999999999888887754 557779999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
++.++..++........+.+..++ ..+.++++..+.+++. ..+...+.+.++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 7888888877766543 2367788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHH
Q 042947 195 WVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFS 229 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~ 229 (487)
..+.++.++|++++++++. .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999987 78999999999 44
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.30 E-value=3.3e-10 Score=111.60 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=185.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 042947 258 FVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSW-ESMIPLGFLAATGVRVANELGAGNA 336 (487)
Q Consensus 258 ~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~a~~p~~~~~~g~~~~ 336 (487)
....|++++++.|..+....++....+.+.+.+|+|+ .++++.++++...+. .+.+..++..+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 4678999999999999999999999999999999995 467898888877665 4557789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHH
Q 042947 337 NGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVA 416 (487)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 416 (487)
+......+++........++.+. ++.+.+++...+++|+++...+..+.++.....+-+.........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999888888888765 45566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 417 FVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 417 ~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
++..... .+++++++++.+..++|..|++.+..+++.+.......+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9999988 999999999999999999999999999999988887766554
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.26 E-value=4.3e-08 Score=98.16 Aligned_cols=418 Identities=10% Similarity=-0.002 Sum_probs=243.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhccccccHHHHHHH
Q 042947 46 QIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIIS-ISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQ 123 (487)
Q Consensus 46 ~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~-~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~ 123 (487)
+-+.-+++.|++..+.+++-+.++-| ++|+.+|..++=..+..- +.+..=-++-.|..+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 34455678888888888887777777 699999888655444431 1122223555554433222211112222222222
Q ss_pred HHHHHHHHHHHHHHHHHH--hhHHH----HHHcCCC-hH---HHHHHHHHHHHHHhHhhhH----HHHHHHHHHHHHccc
Q 042947 124 RSWIVLFICSFLLIPMFV--FASPL----LKLIGQP-TS---VAEQTGIFAVWLIPFHLCL----PFQFTLQRFLQSQLK 189 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~ 189 (487)
....+..+++.++..+.+ ...+. ..+.... ++ ..+.....+.+...+...- +.....+..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 222222222222221211 11111 1111111 11 1111222233333333333 233344555555556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh-cCCccc------hHHHHHHHHHHHHHHHHHHHHHhc---C---CcCccCCCCH-
Q 042947 190 TAVIAWVSGCALLVHVIVSWVFVYK-LRVGLV------GTAITLDFSWWLSVLGLFLYTVCG---G---CPLTWTGFSA- 255 (487)
Q Consensus 190 ~~~~~~~~i~~~~~~i~l~~~li~~-~~~gi~------g~~~a~~i~~~~~~~~~~~~~~~~---~---~~~~~~~~~~- 255 (487)
.+.-........+++..+.+..... .+++.. -+.++...++....+......... . .+....+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 6665666666555555544333221 011111 123444455544443322211111 1 0111111111
Q ss_pred --HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 042947 256 --QAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGY--MHNTEVAVDALSICVTVFSWES-MIPLGFLAATGVRVANE 330 (487)
Q Consensus 256 --~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~ 330 (487)
.....-++.++.......+++.-.+...-+..++.. +.+ .++-|.|++++++-++.. ++...+-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011134778888889999999999988888888887 655 556789999999988764 56778888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHH
Q 042947 331 LGAGNA---------NGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPV 401 (487)
Q Consensus 331 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 401 (487)
..+++. +++.+.+...++....+++.+...-...++.+.++++++.-....+...++.++...++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765533 34566677777777777777777777777778888766543334468899999999999999999
Q ss_pred HHHHHhhcCchhhHHHHH---HHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 402 LTGVAVGSGWQALVAFVN---IGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 402 ~~~~l~~~g~~~~~~~~~---~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
...+.++....+.....+ .+.. ++.+..++++... ++|..|..+|-.+.+.++.+....+.+|
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877654433 3333 5666777877775 6899999999999999998888777655
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=5.7e-06 Score=77.77 Aligned_cols=413 Identities=13% Similarity=0.019 Sum_probs=227.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHH
Q 042947 41 SKKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLG 119 (487)
Q Consensus 41 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~ 119 (487)
...-.+.+.-.+..|++..+.+++-+.++-| ++++.+|..++-..+..-. . . -++--..+......|..+.| -.
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT-i-L--FlsREair~A~l~~gs~~~d-~~ 81 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST-I-L--FLSREAIRLAELRIGSEPAD-TW 81 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH-H-H--HhhHHHHHHHhccCCCCCCc-cH
Confidence 3444555566677788888888776666666 6999999988766665421 1 1 12222223333333433322 11
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHH--HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHHHH
Q 042947 120 IYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSV--AEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWV 196 (487)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (487)
.-+.+..+.+..++....+. ..+ ++.+....++. .+.-..-+.+...+...-.+..-+.-..|..-+.+.-.+.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~---wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYF---WLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHH---HHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22334444444444333221 111 11111111111 1111111223333333333333344445555556666666
Q ss_pred HHHHHHHH-HHHHHHhhhhc-CCccchHHHHHHHHHHHHHHHHHHHHHhc-CCcCcc----------CCCCHH--hHhhH
Q 042947 197 SGCALLVH-VIVSWVFVYKL-RVGLVGTAITLDFSWWLSVLGLFLYTVCG-GCPLTW----------TGFSAQ--AFVGL 261 (487)
Q Consensus 197 ~i~~~~~~-i~l~~~li~~~-~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~--~~~~~ 261 (487)
..+..++. +..-.+++.+. .+++..-|+|.+.......+...+++.+. +..+.. ++.... ..-.-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 66666655 33323333322 35666667777766666665333333322 201000 000000 00012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChH
Q 042947 262 WEFFKLSVASGVMLLLENIYYRVLIIVSGY---MHNTEVAVDALSICVTVFSWES-MIPLGFLAATGVRVANELGAGNAN 337 (487)
Q Consensus 262 ~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~a~~p~~~~~~g~~~~~ 337 (487)
++..+.......+.+.-.+...-+..+.+. ..-+++ |.|.+.++.-++.. ++...+-.......++...+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Q--gvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQ--GVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchh--hHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 233444444444444444444433322221 121244 59999998877654 677788888888888888777766
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhh
Q 042947 338 GAKFA---AIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQAL 414 (487)
Q Consensus 338 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 414 (487)
+.++. ....++....+++.....-...++.+..+++++.-....+...++++++..++.+++.+..++.++.+..+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 66654 445555555555555555555666777777664433334568999999999999999999999999887766
Q ss_pred HHHH---HHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 415 VAFV---NIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 415 ~~~~---~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
...- .++.. ++.+.+++++... +|..|.-.|-.+.+.++-+....+.++
T Consensus 397 i~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 23444 5667888999888 788999999999888887777555544
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.95 E-value=4.9e-06 Score=74.86 Aligned_cols=255 Identities=12% Similarity=0.073 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-c-Ch-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 39 KESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-L-GD-LNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 39 ~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l-g~-~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
...+++.++-+|+.++.+...+...+-+.-++| - .+ +.+++|+++..+.-++ ..+...+-.....+ +++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHH-----hcchh
Confidence 457889999999999999999999998888887 3 33 4599999999997654 33554554443333 33333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-H-HhhHHHH-HHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-F-VFASPLL-KLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAV 192 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (487)
++.+... -......+...+..++ + .+...++ ..++.++++.+.+...+.++.+.-++.++....++++--.+++..
T Consensus 82 srr~~vl-~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVL-CMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 2222222 2222222222222222 2 2333344 667889999999999999999999999999999998887788777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-------CCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCccCCCCHHhHhhHHHHH
Q 042947 193 IAWVSGCALLVHVIVSWVFVYKL-------RVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLTWTGFSAQAFVGLWEFF 265 (487)
Q Consensus 193 ~~~~~i~~~~~~i~l~~~li~~~-------~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (487)
....++...+..+++...+.... ..++.|...+..+-..+.. ..++.-.+ +..+...+....+...+++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~-LGy~~~i~-~~~p~~~~~~~~~~~tl~~~l 238 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVC-LGYYQSIH-DIIPQLSGLEKGDSATLQRML 238 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-hhccccCCcccCCChhHHHHH
Confidence 77777776666666554555311 1222222222222222222 22221111 112222222333336789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHHHH
Q 042947 266 KLSVASGVMLLLENIYYRVLIIVSGY-MHNT---EVAVDAL 302 (487)
Q Consensus 266 ~~~~p~~l~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~ 302 (487)
++.+|.+........+-.+.+.++++ ++++ ++++++.
T Consensus 239 ~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl 279 (345)
T PF07260_consen 239 KFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVL 279 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhh
Confidence 99999999999999999999999998 5553 2444443
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.47 E-value=2.2e-05 Score=65.18 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=73.5
Q ss_pred HHHHHhHhhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHh
Q 042947 164 AVWLIPFHLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVC 243 (487)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~ 243 (487)
+++.+++.++..+....++.+++.||+|.....++++.++|+++++.++. ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999976 7999999999999999999888888876
Q ss_pred c
Q 042947 244 G 244 (487)
Q Consensus 244 ~ 244 (487)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.41 E-value=6.6e-05 Score=75.59 Aligned_cols=203 Identities=8% Similarity=0.030 Sum_probs=157.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--c-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc--
Q 042947 41 SKKLWQIAGPSIFSRPAMFSMTFVTQAFAGH--L-GDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY-- 115 (487)
Q Consensus 41 ~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~-- 115 (487)
-+++.+.+.......++..+.+--|+.++.. + +.++-|.|+++.++-+++.-.++.-+--+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4778888899999999999999999999999 6 8899999999999988776667777888777777877654432
Q ss_pred -------cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHc
Q 042947 116 -------HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQ 187 (487)
Q Consensus 116 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 187 (487)
+++.+.+...+.+...++++++.+ ...++.++.++.++.=....+...+++++..+|+.+++.+.-++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345566777777777777766665 677777777765433223335667899999999999999999999888
Q ss_pred cchhHHHHH---HHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 188 LKTAVIAWV---SGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 188 ~~~~~~~~~---~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
...+..... ..+..++-+..++++... ++|..|..+|..+...+....++.++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554444 444456666777888875 78999999999999999999988888765
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.29 E-value=0.00032 Score=64.89 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042947 266 KLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMI-PLGFLAATGVRVANELGAGNANGAKFAAI 344 (487)
Q Consensus 266 ~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~a~~p~~~~~~g~~~~~~~~~~~~ 344 (487)
|-+......+........+...++.+.-+ .++.|.|+....+.++...+ ..|++++..-.+++...+ .++.++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~-~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG-PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 33444555555555555555545554433 67789999999998887765 678888888777776432 233333444
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 042947 345 VSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYY 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 424 (487)
..........+.......... .+..+ +. + ...........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGNP-SL-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCCc-hH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 343333333333222222222 33333 21 1 12222222222578888889999999999999988888887
Q ss_pred HHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 425 IVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 425 ~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
+..+.+...+... +.+..+...+..++..+...+...+.+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444443 2458889999999998887777776664
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.16 E-value=1.6e-05 Score=66.09 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 042947 386 AILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITI 465 (487)
Q Consensus 386 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~ 465 (487)
+++++++.++.++......++++.||+|..++.++++. ++++++++.+.+. +|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998 9999999999877 99999999999999999888888877
Q ss_pred hc
Q 042947 466 KC 467 (487)
Q Consensus 466 ~~ 467 (487)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 42
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.003 Score=60.07 Aligned_cols=199 Identities=10% Similarity=0.067 Sum_probs=138.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccccHHHH
Q 042947 44 LWQIAGPSIFSRPAMFSMTFVTQAFAGH---LGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQYHMLGI 120 (487)
Q Consensus 44 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~ 120 (487)
..+...-.....++..+.+--|.++++- ++-++-|.|.+..++-+++.-.++.-+.-....+.+|...++++|+.++
T Consensus 241 ~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~ 320 (530)
T KOG2864|consen 241 LLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHH
Confidence 3344444455666777777788888874 2556677777776666655555666777777777777777666555544
Q ss_pred ---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHH---
Q 042947 121 ---YMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVI--- 193 (487)
Q Consensus 121 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 193 (487)
+..+.+.....++++.+.. ...+++++.+.+++.=....+...+++++..+++.+++.+.-+++.+....+..
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~ 400 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKH 400 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhc
Confidence 5566667777777666664 667777877776543333334567899999999999999999988887654433
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 194 AWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 194 ~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
.....+..+..++++++++. .+|..|..+|..+...+..+....++++.
T Consensus 401 n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 401 NKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred ccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888887 56779999999888888877776666554
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.99 E-value=0.003 Score=57.62 Aligned_cols=161 Identities=18% Similarity=0.285 Sum_probs=102.8
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 042947 287 IVSGYMHNTEVAVDALSICVTVFSWESMIP-LGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATP 365 (487)
Q Consensus 287 ~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~-~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (487)
.+...++ .++.|.|+....+.++...+. .++.+.. .+. .++|+++.++..+..........++..+. .
T Consensus 10 ~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 78 (251)
T PF13440_consen 10 LLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSL----VRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL----A 78 (251)
T ss_pred HHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 3444445 667889999999888877653 3443333 222 33566666666666655544444444333 2
Q ss_pred hhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCchhh
Q 042947 366 EKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGI 445 (487)
Q Consensus 366 ~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~ 445 (487)
..+...+ ++++ ...++.+..+..++..........+++.+|.+.......... +..+.+...+... +.+..+.
T Consensus 79 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 151 (251)
T PF13440_consen 79 ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWSI 151 (251)
T ss_pred HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHHH
Confidence 2232333 3332 345566777788888999999999999999999999988877 4443343333332 2478888
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 042947 446 WTGMISGTVVQTVILCVITI 465 (487)
Q Consensus 446 ~~a~~~~~~i~~~~~~~~~~ 465 (487)
.++..++..+..+......+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88988888887666555433
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.93 E-value=0.0064 Score=55.31 Aligned_cols=158 Identities=10% Similarity=0.152 Sum_probs=109.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 042947 258 FVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYM-HNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNA 336 (487)
Q Consensus 258 ~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~ 336 (487)
....+++.++-+|..+++.+..+.-++.+.-+++- .+..+.+|+|+++..+.-++..+...+-++....+. +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SKR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----chh
Confidence 36788999999999999999999999988888774 444456899999999999988888887777666544 222
Q ss_pred HHHHHHHHHHH-HHHHHHHHH-HHHHHHhchhhh-hcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchh
Q 042947 337 NGAKFAAIVSV-LNSLLVGLC-FLSIIIATPEKL-AKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQA 413 (487)
Q Consensus 337 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~i-~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 413 (487)
++ +...... ..+.+..+. ..+..--++.++ .++++-|+++.+.+...+.++.+..+++++.....+++.=.+++.
T Consensus 82 sr--r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 82 SR--RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22 2222222 122222112 112222334433 366777899999999999999999999999999999887555555
Q ss_pred hHHHHHHHH
Q 042947 414 LVAFVNIGS 422 (487)
Q Consensus 414 ~~~~~~~~~ 422 (487)
....-++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 555444443
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.81 E-value=0.029 Score=52.22 Aligned_cols=318 Identities=10% Similarity=0.023 Sum_probs=186.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhH
Q 042947 91 SFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPF 170 (487)
Q Consensus 91 ~~~~~~g~~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (487)
...+..|+....++++|...=++|.+++..-+.....+....+..+..+ +-...++.. ..|=...+..
T Consensus 73 S~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~s-----i~yk~l~~~~ 140 (467)
T COG4267 73 SQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYS-----IVYKILACAL 140 (467)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchh-----HHHHHHHHHH
Confidence 3446678888899999998888888777665555544444433333221 111122221 1122244556
Q ss_pred hhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHhc-CCcCc
Q 042947 171 HLCLPFQFTLQRFLQSQLKTAVIAWVSGCALLVHVIVSWVFVYKLRVGLVGTAITLDFSWWLSVLGLFLYTVCG-GCPLT 249 (487)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~ 249 (487)
........+...++.+.+|.+.......++.++...+...+- ..++.|..++..++..+.......+..|. +-+.
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~- 216 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR- 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc-
Confidence 666677778888999999999999999999999988887666 46999999999999999888877777665 2221
Q ss_pred cCCCCHHh-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHHH-----
Q 042947 250 WTGFSAQA-FVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVD------ALSICVTVFSWESMIPL----- 317 (487)
Q Consensus 250 ~~~~~~~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~i~~~~~~~~~----- 317 (487)
...++..+ .+... ...+.....+.+..+++++.=..+++++-.+ .|.++--...+...|..
T Consensus 217 ~i~FdFL~~~~~y~-------SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 217 RIGFDFLLYRRKYP-------SLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred ccceehhhhhhcch-------HHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 11122111 11121 2233444455555555544433332222111 23444333333333322
Q ss_pred HHHHHHHHHHHHHh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHH
Q 042947 318 GFLAATGVRVANEL----GA-------GNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELA 386 (487)
Q Consensus 318 ~i~~a~~p~~~~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 386 (487)
.+-+...+.--+.+ +. ++.++.....++.+.-..-+-...++.++++++.+...++-|+ ...+.+
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHH
Confidence 22333333322211 11 2233444555666666677778889999999999999887654 245666
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHH
Q 042947 387 ILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGW 436 (487)
Q Consensus 387 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~ 436 (487)
.+-.++..++.....+..+.--..+-+..+-.+..-. +.|-.+.++...
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~ 414 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHH
Confidence 6677777776666666555555656565555554433 566666655544
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=79.69 E-value=59 Score=31.17 Aligned_cols=135 Identities=17% Similarity=0.090 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHH
Q 042947 315 IPLGFLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTIL 394 (487)
Q Consensus 315 ~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 394 (487)
+..++.....-.+|...=++|.++....+.-...+....+..++..++ +..|| . ...+=...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~--si~yk~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--Y--SIVYKILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--h--hHHHHHHHHHHHH
Confidence 344555555555666666667777766666666666655555553221 12222 1 2222234455566
Q ss_pred HhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 395 LNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 395 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
..+...+....+.+++|-+.....-..+. .+...++.++-. .+..|...+.-++..+...+...+..|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67777888889999999999777777766 666666665544 589999999999988876666555443
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=68.06 E-value=98 Score=28.32 Aligned_cols=33 Identities=3% Similarity=-0.093 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042947 312 ESMIPLGFLAATGVRVANELGAGNANGAKFAAI 344 (487)
Q Consensus 312 ~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~ 344 (487)
...+...++.......-+...++|.++.++...
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 344455666667777777788888888866543
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=64.77 E-value=46 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 042947 319 FLAATGVRVANELGAGNANGAKFAAIVSVLNSLLVGLC 356 (487)
Q Consensus 319 i~~a~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 356 (487)
++......+-..+.+||.+++++.-+++.+++..-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 33344566777888999999999999998887655444
No 49
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=51.14 E-value=2.5e+02 Score=27.47 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhc
Q 042947 335 NANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAK 370 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 370 (487)
+.++.+++.+++.+++........+++....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999988887777766665
No 50
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.44 E-value=69 Score=21.96 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.3
Q ss_pred HHHHHhhhhhc
Q 042947 475 KARLHILDEVA 485 (487)
Q Consensus 475 ~~~~~~~~~~~ 485 (487)
++.++.++|.+
T Consensus 55 k~l~~le~e~~ 65 (68)
T PF06305_consen 55 KELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 51
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=30.78 E-value=3.6e+02 Score=23.51 Aligned_cols=59 Identities=8% Similarity=0.015 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHH
Q 042947 323 TGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNEL 385 (487)
Q Consensus 323 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 385 (487)
..|.+....++.++++-++..++.. ..+..+.+.+.++++++.++|+-+-+..+.+...
T Consensus 20 ~ip~f~~lt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGi 78 (203)
T PF01914_consen 20 NIPIFLSLTKGMSPKERRRIARRAS----IIAFIILLIFAFFGQLILNFFGISLPAFRIAGGI 78 (203)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3455555555556666666666655 4555556678889999999998776656655553
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=29.62 E-value=5.1e+02 Score=24.78 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=31.8
Q ss_pred CCCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 042947 251 TGFSAQAFVGLWEFFKLSVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVF 309 (487)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~ 309 (487)
+..++..+...++.+|.++|..+ ..+.++...+-.++++. +.|++.++.-
T Consensus 79 ~~l~~~i~~~~~~~lk~~vPa~i----YalqNnl~yval~~lda-----atyqVt~qlK 128 (345)
T KOG2234|consen 79 KSLSKEILAAPRETLKVSVPALI----YALQNNLQYVALSNLDA-----ATYQVTYQLK 128 (345)
T ss_pred hhcCHHHHhChHHHHHHHHHHHH----HHHhhhHHHHHHhcCCc-----hhhhhhhhHH
Confidence 44555566778899999999987 44444555555555542 2566666653
No 53
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=27.99 E-value=3.4e+02 Score=22.82 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHhh
Q 042947 412 QALVAFVNIGSYYIVGVPLGVFLGWLLHFDIRGIWTGMISGTVVQTVILCVITIK 466 (487)
Q Consensus 412 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~G~~~a~~~~~~i~~~~~~~~~~~ 466 (487)
+...++.+..- +..+|+ |++-..+.+.+..-++-..+...+...+....++.
T Consensus 17 ~~alfY~nA~i--vS~vPi-~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYkN 68 (170)
T PF07074_consen 17 SSALFYGNALI--VSAVPI-WLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYKN 68 (170)
T ss_pred cceehhhHHHH--HHHHHH-HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444444331 333444 44444445677766777777766666655555543
No 54
>PTZ00370 STEVOR; Provisional
Probab=27.60 E-value=1.4e+02 Score=27.47 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=5.5
Q ss_pred ccHHHHHHH
Q 042947 467 CEWQKEAQK 475 (487)
Q Consensus 467 ~~~~~~~~~ 475 (487)
..||++.++
T Consensus 284 ~swkhe~kk 292 (296)
T PTZ00370 284 NSWKHECKK 292 (296)
T ss_pred chhHHHHHh
Confidence 357776654
No 55
>PRK01637 hypothetical protein; Reviewed
Probab=25.49 E-value=5.4e+02 Score=23.79 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhccC
Q 042947 473 AQKARLHILDEVASD 487 (487)
Q Consensus 473 ~~~~~~~~~~~~~~~ 487 (487)
.++.++.+|+|+++|
T Consensus 269 ~~~~~~~~~~~~~~~ 283 (286)
T PRK01637 269 YRKLKQAAEQEEDDE 283 (286)
T ss_pred HHHHhcccccccccc
Confidence 344456777777654
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.34 E-value=1e+02 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcc
Q 042947 444 GIWTGMISGTVVQTVILCVITIKCE 468 (487)
Q Consensus 444 G~~~a~~~~~~i~~~~~~~~~~~~~ 468 (487)
|+.++..++-+...++..++.+|++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333433333333333334444433
No 57
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=23.36 E-value=4.3e+02 Score=21.84 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042947 335 NANGAKFAAIVSVLNSLLVGLCFLSIII 362 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (487)
+.++-++..++....++.++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888777777766655
No 58
>PRK11111 hypothetical protein; Provisional
Probab=23.20 E-value=5.2e+02 Score=22.79 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHH
Q 042947 324 GVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELA 386 (487)
Q Consensus 324 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 386 (487)
.|.+-....+.+.++-++..++.. .....+.+.+.++++++.++|+-+-+..+.+...+
T Consensus 27 ipiflslt~~~s~~~r~~ia~~a~----l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGii 85 (214)
T PRK11111 27 LPVFISMTSHQTAAERNKTNLTAN----LSVAIILLISLFLGDFILNLFGISIDSFRIAGGIL 85 (214)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 355544555555555565665554 44455556778899999999987766566655533
No 59
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=23.08 E-value=5.1e+02 Score=22.59 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHH
Q 042947 323 TGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELA 386 (487)
Q Consensus 323 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 386 (487)
..|.+....++.++++-++..++.. ..+..+.+.+.++++.+.++|+-+-+..+.+...+
T Consensus 23 ~ipvfl~lt~~~~~~~r~~ia~~~~----l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGii 82 (201)
T TIGR00427 23 NIPIFISLTEYYTAAERNKIAKKAN----ISSFIILLIFLVFGDTILKLFGISIDAFRIAGGIL 82 (201)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3466666665566666666666555 44455556788889999999987766566555533
No 60
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.46 E-value=4.7e+02 Score=23.17 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 042947 115 YHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQ 152 (487)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (487)
++...+.+..++...+++-+++++++....++..+++.
T Consensus 143 y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 143 YQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 33444444444444444444444456666777776663
No 61
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=20.72 E-value=1.7e+02 Score=21.12 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=3.5
Q ss_pred HHHHhhccHHHHHHHHHHHh
Q 042947 461 CVITIKCEWQKEAQKARLHI 480 (487)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ 480 (487)
+..|+|.+.+++..+..+++
T Consensus 27 ~ieYrk~~rqrkId~li~RI 46 (81)
T PF00558_consen 27 YIEYRKIKRQRKIDRLIERI 46 (81)
T ss_dssp ------------CHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 34445545555544444444
No 62
>PRK10739 putative antibiotic transporter; Provisional
Probab=20.39 E-value=5.7e+02 Score=22.20 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHH
Q 042947 323 TGVRVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNEL 385 (487)
Q Consensus 323 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 385 (487)
..|.+-....+.++++-++..++.. ..+..+.+.+.++++.+.++|+-+.+..+.+...
T Consensus 20 ~ipiflslt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 20 NLPIFMSVLKHLEPKRRRAIMIREL----LIALLVMLVFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3455555555566666666766665 4444555578889999999998876666666553
No 63
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.23 E-value=1.4e+02 Score=23.60 Aligned_cols=25 Identities=8% Similarity=-0.164 Sum_probs=10.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 220 VGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 220 ~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
.|+.+|..++-+...++..+.++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333334444443
Done!