Query 042947
Match_columns 487
No_of_seqs 269 out of 2025
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.3E-49 7.8E-54 396.4 35.0 431 35-468 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 8.9E-20 3.1E-24 181.8 19.9 208 36-244 232-446 (460)
3 1pw4_A Glycerol-3-phosphate tr 87.5 19 0.00067 34.0 40.2 21 440-460 410-430 (451)
4 3o7q_A L-fucose-proton symport 72.1 64 0.0022 30.1 31.8 37 45-81 29-67 (438)
5 4aps_A DI-OR tripeptide H+ sym 68.0 85 0.0029 29.9 28.1 20 439-458 447-466 (491)
6 2k1k_A Ephrin type-A receptor 34.6 42 0.0014 19.4 3.0 23 219-241 13-35 (38)
7 2knc_B Integrin beta-3; transm 27.0 1.5E+02 0.0053 20.3 5.6 22 441-462 9-30 (79)
8 2ks1_B Epidermal growth factor 24.6 1.2E+02 0.0041 18.2 4.5 26 219-244 13-38 (44)
9 2jwa_A Receptor tyrosine-prote 24.0 1.1E+02 0.0038 18.3 3.6 14 231-244 25-38 (44)
10 2l2t_A Receptor tyrosine-prote 22.7 1.3E+02 0.0045 18.0 3.8 9 236-244 29-37 (44)
11 4ev6_A Magnesium transport pro 21.8 1.7E+02 0.0057 26.6 6.5 48 418-469 282-338 (339)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.3e-49 Score=396.43 Aligned_cols=431 Identities=22% Similarity=0.353 Sum_probs=395.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Q 042947 35 SKTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQ 114 (487)
Q Consensus 35 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~ 114 (487)
...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++.... ..+..|++.+..+.++|+.|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567899999999999999999999999999999999999999999999997754 55778999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 115 YHMLGIYMQRSWIVLFICSFLLIPMFVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
+++.++.+++++.+...+++++.++..+.++++.+++.+++..+.+..|++++.++.++..+.....+.+++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877777788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhcCCcCc---cCCCCHHhHhhHHHHHHH
Q 042947 195 WVSGCALLVHVIVSWVFVYK-L---RVGLVGTAITLDFSWWLSVLGLFLYTVCGGCPLT---WTGFSAQAFVGLWEFFKL 267 (487)
Q Consensus 195 ~~~i~~~~~~i~l~~~li~~-~---~~gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 267 (487)
..++++.++|++++++++.. + ++|+.|+++++.+++.+..++..++.++++...+ ++++.+.+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 6999999999999999999988888776622111 122223455789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042947 268 SVASGVMLLLENIYYRVLIIVSGYMHNTEVAVDALSICVTVFSWESMIPLGFLAATGVRVANELGAGNANGAKFAAIVSV 347 (487)
Q Consensus 268 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~~ 347 (487)
+.|.+++++.....+.+++.+++++| +.++|+|++++++.++..++..+++++..|.+++++|++|++++++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999997 6778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCchhhHHHHHHHHHHHHh
Q 042947 348 LNSLLVGLCFLSIIIATPEKLAKIFTSSPAVITMVNELAILLAFTILLNCIQPVLTGVAVGSGWQALVAFVNIGSYYIVG 427 (487)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 427 (487)
+++..++++++++++++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++++.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hc-CCchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 042947 428 VPLGVFLGWL----LH-FDIRGIWTGMISGTVVQTVILCVITIKCE 468 (487)
Q Consensus 428 i~l~~~l~~~----~~-~g~~G~~~a~~~~~~i~~~~~~~~~~~~~ 468 (487)
+|+++++.+. ++ +|..|+|+++.+++.+..++..++++|..
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 67 99999999999999999888776665543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=8.9e-20 Score=181.81 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccc
Q 042947 36 KTWKESKKLWQIAGPSIFSRPAMFSMTFVTQAFAGHLGDLNLAAISIATTVIISISFGFLLGMASALETLCGQAYGAKQY 115 (487)
Q Consensus 36 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~a~~~~~s~~~~~~~~ 115 (487)
.+++..|++++.++|..++++...+...+|+.+++++|++++|+++++.++.++. ..+..+++++..|.+++++|++|+
T Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp STTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3456689999999999999999999999999999999999999999999999866 468889999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHccchhHHH
Q 042947 116 HMLGIYMQRSWIVLFICSFLLIPM-FVFASPLLKLIGQPTSVAEQTGIFAVWLIPFHLCLPFQFTLQRFLQSQLKTAVIA 194 (487)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (487)
++.++..+++..+...++++++++ ..+.+++..++..|++..+.+..+++++.++.++.++.....+.+++.||++.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999888886 7888899998888888888999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHhhhh----cC-CccchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 195 WVSGCAL-LVHVIVSWVFVYK----LR-VGLVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 195 ~~~i~~~-~~~i~l~~~li~~----~~-~gi~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
..++++. ++++++++++... .+ +|+.|+++++.+++.+..++..+.++|+
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999875 45 9999999999999999988776655543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=87.54 E-value=19 Score=34.00 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=10.9
Q ss_pred CCchhhhHHHHHHHHHHHHHH
Q 042947 440 FDIRGIWTGMISGTVVQTVIL 460 (487)
Q Consensus 440 ~g~~G~~~a~~~~~~i~~~~~ 460 (487)
.|....++...+..++..++.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 566666555555544444333
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=72.15 E-value=64 Score=30.13 Aligned_cols=37 Identities=8% Similarity=-0.018 Sum_probs=16.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhcc--ChhhHHHHH
Q 042947 45 WQIAGPSIFSRPAMFSMTFVTQAFAGHL--GDLNLAAIS 81 (487)
Q Consensus 45 ~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~~~~~~~~ 81 (487)
.....-.+...............+..++ ++.+.+...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333333344444344444444455555 444444433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=68.04 E-value=85 Score=29.91 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=8.5
Q ss_pred cCCchhhhHHHHHHHHHHHH
Q 042947 439 HFDIRGIWTGMISGTVVQTV 458 (487)
Q Consensus 439 ~~g~~G~~~a~~~~~~i~~~ 458 (487)
+.+....+....+...+..+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 447 AKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp GSSTTHHHHHTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=34.65 E-value=42 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=10.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 042947 219 LVGTAITLDFSWWLSVLGLFLYT 241 (487)
Q Consensus 219 i~g~~~a~~i~~~~~~~~~~~~~ 241 (487)
+.|+.++.+++-.+...+.++++
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHHHe
Confidence 34455555555444444444333
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.97 E-value=1.5e+02 Score=20.27 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=9.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHH
Q 042947 441 DIRGIWTGMISGTVVQTVILCV 462 (487)
Q Consensus 441 g~~G~~~a~~~~~~i~~~~~~~ 462 (487)
.+.++..+...+.++.+++.+.
T Consensus 9 n~~~Iv~gvi~gilliGlllll 30 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALL 30 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHH
Confidence 3444444544444444444333
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.59 E-value=1.2e+02 Score=18.15 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=11.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Q 042947 219 LVGTAITLDFSWWLSVLGLFLYTVCG 244 (487)
Q Consensus 219 i~g~~~a~~i~~~~~~~~~~~~~~~~ 244 (487)
+.+..++-++...+..+..+++++|+
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 33333433333334444444455544
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.99 E-value=1.1e+02 Score=18.28 Aligned_cols=14 Identities=0% Similarity=-0.320 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhc
Q 042947 231 WLSVLGLFLYTVCG 244 (487)
Q Consensus 231 ~~~~~~~~~~~~~~ 244 (487)
++..+....+++|+
T Consensus 25 vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 25 VVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheehh
Confidence 33344444555555
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.73 E-value=1.3e+02 Score=17.98 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=3.8
Q ss_pred HHHHHHHhc
Q 042947 236 GLFLYTVCG 244 (487)
Q Consensus 236 ~~~~~~~~~ 244 (487)
..+++++|+
T Consensus 29 ~~~~~~RRR 37 (44)
T 2l2t_A 29 TFAVYVRRK 37 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 334444443
No 11
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.85 E-value=1.7e+02 Score=26.61 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCCc---------hhhhHHHHHHHHHHHHHHHHHHhhccH
Q 042947 418 VNIGSYYIVGVPLGVFLGWLLHFDI---------RGIWTGMISGTVVQTVILCVITIKCEW 469 (487)
Q Consensus 418 ~~~~~~~~~~i~l~~~l~~~~~~g~---------~G~~~a~~~~~~i~~~~~~~~~~~~~~ 469 (487)
.++++ ++.+|+.++-+.+ ++++ .|.|++..+ .++..++.+++++|++|
T Consensus 282 LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 282 LTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 44443 4556777665543 2222 344444443 34445555666777777
Done!