Query 042947
Match_columns 487
No_of_seqs 269 out of 2025
Neff 10.4
Searched_HMMs 13730
Date Mon Mar 25 19:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042947.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042947hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 78.7 20 0.0015 31.3 40.2 24 440-463 407-430 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 14.5 3.1E+02 0.023 22.7 21.4 27 216-242 406-432 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 10.6 1.3E+02 0.0095 16.0 4.2 34 335-368 7-40 (41)
4 d2iuba2 f.17.3.1 (A:286-349) M 5.5 2.5E+02 0.018 16.4 3.1 8 426-433 15-22 (64)
5 d1ijdb_ f.3.1.1 (B:) Light-har 4.8 2.8E+02 0.02 14.6 4.4 33 335-367 8-40 (40)
6 d2yvxa3 f.57.1.1 (A:276-448) M 4.1 6.6E+02 0.048 18.1 6.8 29 110-138 69-97 (173)
7 d1j1va_ a.4.12.2 (A:) Chromoso 3.1 4E+02 0.029 16.9 2.7 34 313-346 38-71 (94)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.8 1E+03 0.076 18.1 7.5 50 326-375 184-233 (290)
9 d1ppjd2 f.23.11.1 (D:196-241) 2.6 4.8E+02 0.035 14.2 2.2 13 460-472 23-35 (46)
10 d1pv7a_ f.38.1.2 (A:) Lactose 2.3 1.2E+03 0.09 17.7 35.5 45 42-86 7-54 (417)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=78.70 E-value=20 Score=31.30 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=13.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHH
Q 042947 440 FDIRGIWTGMISGTVVQTVILCVI 463 (487)
Q Consensus 440 ~g~~G~~~a~~~~~~i~~~~~~~~ 463 (487)
+|..+..+......++..++....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHH
Confidence 676666666555555554444433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.55 E-value=3.1e+02 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=14.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHH
Q 042947 216 RVGLVGTAITLDFSWWLSVLGLFLYTV 242 (487)
Q Consensus 216 ~~gi~g~~~a~~i~~~~~~~~~~~~~~ 242 (487)
..|..+..+.......+..++......
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555555555555554444433
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=10.62 E-value=1.3e+02 Score=16.00 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 042947 335 NANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKL 368 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 368 (487)
+.|+..+....+.|.-..++++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888899988888888877777777664
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.54 E-value=2.5e+02 Score=16.37 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=3.6
Q ss_pred HhHHHHHH
Q 042947 426 VGVPLGVF 433 (487)
Q Consensus 426 ~~i~l~~~ 433 (487)
+.+|+.++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44454443
No 5
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.77 E-value=2.8e+02 Score=14.58 Aligned_cols=33 Identities=9% Similarity=-0.084 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 042947 335 NANGAKFAAIVSVLNSLLVGLCFLSIIIATPEK 367 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (487)
+.++..+....+.|.-..++++.=++.+...+|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCCC
Confidence 356778888888888888887776666655543
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.11 E-value=6.6e+02 Score=18.11 Aligned_cols=29 Identities=7% Similarity=-0.144 Sum_probs=17.4
Q ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHH
Q 042947 110 YGAKQYHMLGIYMQRSWIVLFICSFLLIP 138 (487)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (487)
.|+-+.++.++...+=+...+..+..+.+
T Consensus 69 ~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 69 TRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp TTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33435566667776666666666655544
No 7
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=4e+02 Score=16.94 Aligned_cols=34 Identities=6% Similarity=0.032 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042947 313 SMIPLGFLAATGVRVANELGAGNANGAKFAAIVS 346 (487)
Q Consensus 313 ~~~~~~i~~a~~p~~~~~~g~~~~~~~~~~~~~~ 346 (487)
+.+..-......+.+|+.+|.+|+.-+.+..++.
T Consensus 38 ~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 38 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Confidence 3344455566788899999888888877776663
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.79 E-value=1e+03 Score=18.05 Aligned_cols=50 Identities=16% Similarity=0.061 Sum_probs=29.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCc
Q 042947 326 RVANELGAGNANGAKFAAIVSVLNSLLVGLCFLSIIIATPEKLAKIFTSS 375 (487)
Q Consensus 326 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 375 (487)
..++..|+++.+..++..--..+=+...+.........---....++.++
T Consensus 184 EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~~ 233 (290)
T d2r6gg1 184 EAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 233 (290)
T ss_dssp HHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCCS
T ss_pred hhHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhccccccceeccCC
Confidence 34677788888888887777777766666665544333222233344443
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.64 E-value=4.8e+02 Score=14.20 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=7.3
Q ss_pred HHHHHhhccHHHH
Q 042947 460 LCVITIKCEWQKE 472 (487)
Q Consensus 460 ~~~~~~~~~~~~~ 472 (487)
..++++|..|...
T Consensus 23 l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 23 LVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 3455566667543
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.27 E-value=1.2e+03 Score=17.69 Aligned_cols=45 Identities=11% Similarity=-0.004 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-c--ChhhHHHHHHHHHH
Q 042947 42 KKLWQIAGPSIFSRPAMFSMTFVTQAFAGH-L--GDLNLAAISIATTV 86 (487)
Q Consensus 42 k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-l--g~~~~~~~~~~~~i 86 (487)
|+.+.++.-.++..+........-..++.+ + ++.++|.......+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l 54 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL 54 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 455556655555555544444333333433 3 45555554433333
Done!