Your job contains 1 sequence.
>042948
MGAKQKKALKKNLKEVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGR
IPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL
FEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYECPEIVGYV
MPAPKKIKFDED
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042948
(192 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184367 - symbol:AT5G04600 species:3702 "Arabi... 511 1.4e-60 2
ASPGD|ASPL0000073265 - symbol:AN4346 species:162425 "Emer... 322 5.6e-29 1
POMBASE|SPCC1827.05c - symbol:SPCC1827.05c "nucleolar RNA... 303 5.7e-27 1
UNIPROTKB|F1RXX7 - symbol:MKI67 "Uncharacterized protein"... 278 1.9e-26 2
ZFIN|ZDB-GENE-021231-4 - symbol:mki67ip "mki67 (FHA domai... 263 2.1e-25 2
UNIPROTKB|F1NT45 - symbol:MKI67IP "Uncharacterized protei... 252 4.9e-24 2
UNIPROTKB|Q3SZM1 - symbol:MKI67IP "MKI67 FHA domain-inter... 273 8.7e-24 1
UNIPROTKB|G4MTM5 - symbol:MGG_12370 "MKI67 FHA domain-int... 273 8.7e-24 1
UNIPROTKB|E2RHG8 - symbol:MKI67IP "Uncharacterized protei... 270 1.8e-23 1
UNIPROTKB|J9NXM6 - symbol:MKI67IP "Uncharacterized protei... 270 1.8e-23 1
UNIPROTKB|Q6GL69 - symbol:mki67ipl "MKI67 FHA domain-inte... 262 1.3e-22 1
CGD|CAL0002077 - symbol:NOP15 species:5476 "Candida albic... 255 7.0e-22 1
UNIPROTKB|Q7SYS2 - symbol:mki67ipl "MKI67 FHA domain-inte... 247 4.9e-21 1
UNIPROTKB|E9PFS2 - symbol:MKI67IP "MKI67 FHA domain-inter... 243 1.3e-20 1
UNIPROTKB|Q9BYG3 - symbol:MKI67IP "MKI67 FHA domain-inter... 243 1.3e-20 1
SGD|S000005054 - symbol:NOP15 "Constituent of 66S pre-rib... 238 4.4e-20 1
MGI|MGI:1915199 - symbol:Mki67ip "Mki67 (FHA domain) inte... 201 2.0e-19 2
RGD|708462 - symbol:Mki67ip "Mki67 (FHA domain) interacti... 218 5.8e-18 1
WB|WBGene00011408 - symbol:T04A8.6 species:6239 "Caenorha... 207 8.6e-17 1
UNIPROTKB|C9J6C5 - symbol:MKI67IP "MKI67 FHA domain-inter... 206 1.1e-16 1
FB|FBgn0038989 - symbol:CG6937 species:7227 "Drosophila m... 205 3.3e-16 1
DICTYBASE|DDB_G0275885 - symbol:DDB_G0275885 "MKI67 FHA d... 150 1.8e-10 1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 132 7.6e-09 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 132 7.6e-09 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 128 2.0e-08 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 128 2.0e-08 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 135 2.7e-08 1
UNIPROTKB|I3LDD0 - symbol:I3LDD0 "Uncharacterized protein... 131 4.6e-08 1
DICTYBASE|DDB_G0288291 - symbol:DDB_G0288291 "putative RN... 119 1.8e-07 1
UNIPROTKB|I3LAS7 - symbol:I3LAS7 "Uncharacterized protein... 128 2.8e-07 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 114 6.1e-07 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 112 1.0e-06 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 112 1.0e-06 1
UNIPROTKB|Q9KVI6 - symbol:VC_0159 "RNA-binding protein" s... 112 1.0e-06 1
TIGR_CMR|VC_0159 - symbol:VC_0159 "RNA-binding protein" s... 112 1.0e-06 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 126 1.0e-06 1
UNIPROTKB|I3LKX8 - symbol:I3LKX8 "Uncharacterized protein... 125 1.1e-06 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 109 2.1e-06 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 109 2.1e-06 1
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 127 3.4e-06 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 107 3.4e-06 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 123 4.3e-06 1
FB|FBgn0037602 - symbol:CG8021 species:7227 "Drosophila m... 106 4.7e-06 1
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con... 106 4.7e-06 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 117 4.8e-06 1
UNIPROTKB|E1C131 - symbol:E1C131 "Uncharacterized protein... 104 8.2e-06 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 104 8.2e-06 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 104 8.2e-06 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 123 8.6e-06 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 119 8.7e-06 1
WB|WBGene00016245 - symbol:C30B5.4 species:6239 "Caenorha... 120 1.0e-05 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 120 1.3e-05 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 122 1.3e-05 1
ZFIN|ZDB-GENE-070620-21 - symbol:zgc:165603 "zgc:165603" ... 109 1.4e-05 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 115 1.5e-05 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 115 1.5e-05 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 115 1.5e-05 1
UNIPROTKB|G4N6H0 - symbol:MGG_03722 "Uncharacterized prot... 122 1.8e-05 1
TAIR|locus:2075676 - symbol:AT3G47120 species:3702 "Arabi... 119 1.9e-05 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 101 1.9e-05 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 101 1.9e-05 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 101 1.9e-05 1
TIGR_CMR|CHY_0389 - symbol:CHY_0389 "RNA-binding protein"... 101 1.9e-05 1
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi... 121 2.1e-05 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 118 2.1e-05 1
UNIPROTKB|I3L1D4 - symbol:RBFOX1 "RNA-binding protein fox... 113 2.1e-05 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 109 2.4e-05 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 109 2.4e-05 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 111 2.9e-05 1
ASPGD|ASPL0000074275 - symbol:AN4665 species:162425 "Emer... 116 3.0e-05 1
UNIPROTKB|E7EV40 - symbol:DAZL "Deleted in azoospermia-li... 113 3.1e-05 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 116 3.3e-05 1
FB|FBgn0015818 - symbol:Spx "Spliceosomal protein on the ... 117 3.8e-05 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 119 4.3e-05 1
UNIPROTKB|F6UBL3 - symbol:CELF6 "CUGBP Elav-like family m... 98 4.3e-05 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 98 4.3e-05 1
FB|FBgn0032822 - symbol:CG10466 species:7227 "Drosophila ... 106 4.7e-05 1
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 117 4.8e-05 1
UNIPROTKB|F8VZY7 - symbol:RBFOX1 "RNA-binding protein fox... 114 5.0e-05 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 114 5.0e-05 2
UNIPROTKB|G4NC92 - symbol:MGG_01109 "Nuclear cap-binding ... 106 5.1e-05 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 111 5.4e-05 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 111 5.4e-05 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 97 5.6e-05 1
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 117 6.1e-05 1
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 117 6.1e-05 1
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 117 6.1e-05 1
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi... 114 6.7e-05 1
UNIPROTKB|K7GKR9 - symbol:RBMX "Uncharacterized protein" ... 110 6.7e-05 1
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 115 6.8e-05 1
UNIPROTKB|F1RKX4 - symbol:RBFOX1 "Uncharacterized protein... 112 6.9e-05 1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 107 6.9e-05 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 107 6.9e-05 1
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 116 7.0e-05 1
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 115 7.1e-05 1
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 114 7.1e-05 1
UNIPROTKB|E2RBV8 - symbol:HNRNPA0 "Uncharacterized protei... 114 7.1e-05 1
UNIPROTKB|K7EP16 - symbol:EIF3G "Eukaryotic translation i... 96 7.3e-05 1
UNIPROTKB|F1RH94 - symbol:HNRNPA0 "Uncharacterized protei... 114 7.4e-05 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 115 8.0e-05 1
WARNING: Descriptions of 216 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2184367 [details] [associations]
symbol:AT5G04600 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006333 "chromatin assembly or disassembly" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162875 eggNOG:NOG244773
HOGENOM:HOG000242795 KO:K14838 HSSP:Q61474 UniGene:At.4932
UniGene:At.65019 EMBL:AF378899 EMBL:AY055787 EMBL:AY063822
EMBL:AY123013 IPI:IPI00541604 PIR:T48456 RefSeq:NP_196080.1
ProteinModelPortal:Q9LZ65 SMR:Q9LZ65 IntAct:Q9LZ65 STRING:Q9LZ65
PaxDb:Q9LZ65 PRIDE:Q9LZ65 EnsemblPlants:AT5G04600.1 GeneID:830337
KEGG:ath:AT5G04600 TAIR:At5g04600 InParanoid:Q9LZ65 OMA:IGHIPHG
PhylomeDB:Q9LZ65 ProtClustDB:CLSN2686415 ArrayExpress:Q9LZ65
Genevestigator:Q9LZ65 Uniprot:Q9LZ65
Length = 222
Score = 511 (184.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 96/147 (65%), Positives = 117/147 (79%)
Query: 17 SSQLPVSSDRKDTADFLPLEGGPRRKLP-EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFS 75
SSQLP+ + K +ADFLPLEGGP RK P PL NKA VLYIGRIP FYE E+ AFFS
Sbjct: 22 SSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFS 81
Query: 76 QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHV 135
QFGT++R+R+ARNKKTGKSKHFGFI+F DP+VAE+ A AM+ YLL EH+L+VH+I PE+V
Sbjct: 82 QFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENV 141
Query: 136 HPKLWRGFNHGYKPLDWVQVECKRQNK 162
P LWRGF +KP+D VQ+E ++ NK
Sbjct: 142 KPNLWRGFKCNFKPVDSVQIERRQLNK 168
Score = 127 (49.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 148 KPLDWVQVECKRQNKRIEAASIEYECPEIVGYVMPAPKKIKFDED 192
K L + + +++ KRIEAA IEYECPE+VG P PK+IKF E+
Sbjct: 177 KMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221
>ASPGD|ASPL0000073265 [details] [associations]
symbol:AN4346 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:NOG244773 KO:K14838 OrthoDB:EOG4BK8DG
EMBL:AACD01000075 RefSeq:XP_661950.1 ProteinModelPortal:Q5B534
EnsemblFungi:CADANIAT00006114 GeneID:2872144 KEGG:ani:AN4346.2
HOGENOM:HOG000187934 OMA:YLMYGHI Uniprot:Q5B534
Length = 445
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 56/108 (51%), Positives = 78/108 (72%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
V+Y+GRIP FYE +M A+FSQFG I +LR++RN+ TGKSKH+ FIEF+ VA++VA
Sbjct: 211 VVYVGRIPHGFYEHQMRAYFSQFGDITKLRLSRNRHTGKSKHYAFIEFASESVAKIVAAT 270
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
M YL++ HIL+ +P E +HP+LW+G N +K W ++E KR NK
Sbjct: 271 MDNYLMYGHILKCKYVPSEQLHPELWKGANRRFKATPWNRIEQKRLNK 318
>POMBASE|SPCC1827.05c [details] [associations]
symbol:SPCC1827.05c "nucleolar RNA-binding protein NIFK
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC1827.05c GO:GO:0005730 EMBL:CU329672
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042254 GO:GO:0003723
HSSP:Q15427 eggNOG:NOG244773 KO:K14838 OMA:QKHEERI
OrthoDB:EOG4BK8DG PIR:T41166 RefSeq:NP_588551.1
ProteinModelPortal:O74978 STRING:O74978 EnsemblFungi:SPCC1827.05c.1
GeneID:2539389 KEGG:spo:SPCC1827.05c NextBio:20800553
Uniprot:O74978
Length = 276
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 40 RRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGF 99
++K+ E K L K VLY+GR+P FYEK+M +FSQFG + RLR++RN+KTG SKH+ F
Sbjct: 91 KKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAF 150
Query: 100 IEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYK 148
IEF DVA VVA+ MH YLL+ +LQ +IP + VH +++G + +K
Sbjct: 151 IEFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFK 199
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 278 (102.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 54/122 (44%), Positives = 82/122 (67%)
Query: 42 KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIE 101
K PE++ L V+Y+G +P YE ++ A+FSQFGT+ RLR++R+KKTG SK +GF+E
Sbjct: 35 KQPEKQKLT--PGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVE 92
Query: 102 FSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQN 161
F DVA + A+ M+ YL E +L+ H+IPPE VH +L+R ++ +K + V KR N
Sbjct: 93 FESEDVARIAAETMNNYLFGERLLKCHIIPPEKVHEELFREWHMPFKRPSFPAV--KRYN 150
Query: 162 KR 163
++
Sbjct: 151 QK 152
Score = 35 (17.4 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 158 KRQNKRIEAASIEYECPEIV 177
K KR+ I+Y P +V
Sbjct: 170 KSLRKRLAKKGIDYNFPSLV 189
>ZFIN|ZDB-GENE-021231-4 [details] [associations]
symbol:mki67ip "mki67 (FHA domain) interacting
nucleolar phosphoprotein (human)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010923 "negative regulation
of phosphatase activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-021231-4
GO:GO:0007275 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX
InterPro:IPR021043 Pfam:PF12196 EMBL:AF506200 EMBL:BC071545
IPI:IPI00502973 RefSeq:NP_775395.1 UniGene:Dr.76897
ProteinModelPortal:Q8JIY8 SMR:Q8JIY8 STRING:Q8JIY8 PRIDE:Q8JIY8
Ensembl:ENSDART00000059549 GeneID:317644 KEGG:dre:317644
InParanoid:Q8JIY8 NextBio:20807127 Bgee:Q8JIY8 Uniprot:Q8JIY8
Length = 269
Score = 263 (97.6 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 52/122 (42%), Positives = 81/122 (66%)
Query: 41 RKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFI 100
+K P+ ++ VLY+G +PR +E ++ ++F QFG + RLR++R+KKTG SK +GF+
Sbjct: 33 KKRPQTGQTLSPG-VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFV 91
Query: 101 EFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQ 160
EF +VA++VA+ M+ YL+ E I++ H+IPPE VH KL+ G G+K + V R
Sbjct: 92 EFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVT--RY 149
Query: 161 NK 162
NK
Sbjct: 150 NK 151
Score = 40 (19.1 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 162 KRIEAASIEYECPEIVGYVMPAPK 185
KR+ A I+Y+ P + PA K
Sbjct: 174 KRLAAKGIDYDFPGFAAQI-PAKK 196
>UNIPROTKB|F1NT45 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794 GO:GO:0010923
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AADN02016872 IPI:IPI00580070 UniGene:Gga.9339
Ensembl:ENSGALT00000019039 NextBio:20826597 Uniprot:F1NT45
Length = 276
Score = 252 (93.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 50/109 (45%), Positives = 70/109 (64%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
V+Y+G +PR E ++ +F QFGT+RRLR++R+KKTG SK + FIEF DVA++VAD
Sbjct: 45 VVYVGHLPRGLCEPQLRQYFEQFGTVRRLRLSRSKKTGGSKGYAFIEFESDDVAKIVADT 104
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGY-KPLDWVQVECKRQNK 162
M+ YL E +L+ +PPE VH L++ + KP Q KR NK
Sbjct: 105 MNNYLFSERLLKCQFMPPERVHANLFKNSERMFQKPS---QPAVKRYNK 150
Score = 38 (18.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 157 CKRQNKRIEAASIEYECPEIVGYVMPAP-KKIK 188
C R KR+ I+Y P +P KK+K
Sbjct: 170 CLR--KRLAEKGIKYSFPGFAAQGLPVKRKKVK 200
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 50/125 (40%), Positives = 80/125 (64%)
Query: 40 RRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGF 99
RR +++ V+Y+G +P YE ++ A+FSQFGT+ R R++R+KKTG SK +GF
Sbjct: 31 RRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGF 90
Query: 100 IEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKR 159
+EF DVA++ A+ M+ YL E +L+ H IPPE VH +L+R ++ +K + V+
Sbjct: 91 VEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKRYN 150
Query: 160 QNKRI 164
QN+ +
Sbjct: 151 QNRSL 155
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 61/150 (40%), Positives = 84/150 (56%)
Query: 22 VSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAA---------VLYIGRIPRWFYEKEMHA 72
VS D ++ D+ G K+P+ V K+A V+YIG IP F+E E+
Sbjct: 129 VSDDEEEGGDYTA--GTDVGKVPKVSTKVKKSAQAGSSDGPRVIYIGHIPYGFFEHEIRQ 186
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
+ SQFGTI LR++RNKKTG SK + F+EF D A +VA M YLLF IL+V L+P
Sbjct: 187 YLSQFGTITNLRLSRNKKTGASKGYAFVEFQDASTAAIVAKTMDAYLLFGRILKVKLVPR 246
Query: 133 EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
E H L++G N +K + W ++ K K
Sbjct: 247 ESQHDNLFKGANRRFKKVPWTKMAGKELEK 276
>UNIPROTKB|E2RHG8 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 Ensembl:ENSCAFT00000007586
Uniprot:E2RHG8
Length = 299
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 49/110 (44%), Positives = 75/110 (68%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
V+Y+G +P YE ++ A+FSQFGT+ R R++R+K+TG SK + F+EF+ DVA++VAD
Sbjct: 46 VIYVGHLPPALYETQIRAYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFASEDVAKIVADT 105
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRI 164
M+ YL E +LQ H IPPE VH +L+R + +K + V+ QN+ +
Sbjct: 106 MNNYLFGERLLQCHFIPPEKVHEELFREWYIPFKKPSYPAVKRYNQNRTL 155
>UNIPROTKB|J9NXM6 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 KO:K14838 InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 RefSeq:XP_003639749.1
ProteinModelPortal:J9NXM6 Ensembl:ENSCAFT00000044914
GeneID:100856252 KEGG:cfa:100856252 Uniprot:J9NXM6
Length = 297
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 49/110 (44%), Positives = 75/110 (68%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
V+Y+G +P YE ++ A+FSQFGT+ R R++R+K+TG SK + F+EF+ DVA++VAD
Sbjct: 46 VIYVGHLPPALYETQIRAYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFASEDVAKIVADT 105
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRI 164
M+ YL E +LQ H IPPE VH +L+R + +K + V+ QN+ +
Sbjct: 106 MNNYLFGERLLQCHFIPPEKVHEELFREWYIPFKKPSYPAVKRYNQNRTL 155
>UNIPROTKB|Q6GL69 [details] [associations]
symbol:mki67ipl "MKI67 FHA domain-interacting nucleolar
phosphoprotein-like" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0010923 "negative regulation of phosphatase activity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923 CTD:84365
eggNOG:NOG244773 HOGENOM:HOG000242795 HOVERGEN:HBG057796 KO:K14838
OrthoDB:EOG4MKNGX InterPro:IPR021043 Pfam:PF12196 EMBL:BC074637
RefSeq:NP_001005639.1 UniGene:Str.1406 ProteinModelPortal:Q6GL69
SMR:Q6GL69 STRING:Q6GL69 GeneID:448106 KEGG:xtr:448106
Xenbase:XB-GENE-940532 InParanoid:Q6GL69 Uniprot:Q6GL69
Length = 276
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
V+YIG IPR YE ++ +FSQFGT+ RLR++R+KKTG SK + ++EF +VA++VAD
Sbjct: 42 VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGY-KPLDWVQVECKRQNKR 163
M+ YL E +L+ +PPE VHP+L+ G + KP + R NKR
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKP---TKPAVSRYNKR 148
>CGD|CAL0002077 [details] [associations]
symbol:NOP15 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000915 "cytokinesis, actomyosin
contractile ring assembly" evidence=IEA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:NOG244773 KO:K14838 RefSeq:XP_720342.1
RefSeq:XP_888701.1 ProteinModelPortal:Q5AFL8 STRING:Q5AFL8
GeneID:3637966 GeneID:3704039 KEGG:cal:CaO19.7050
KEGG:cal:CaO19_7050 Uniprot:Q5AFL8
Length = 267
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 46/116 (39%), Positives = 76/116 (65%)
Query: 47 KPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106
K +K+ V+YIGR+P F E E+ +FSQFG + +++ARNKKTG +KH+GFIEF +
Sbjct: 117 KSTKSKSGVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIE 176
Query: 107 VAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
VA+V A+ M+ YLLF H+++ ++ E+ H ++ N +K + W ++ ++ K
Sbjct: 177 VAKVAAETMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEK 230
>UNIPROTKB|Q7SYS2 [details] [associations]
symbol:mki67ipl "MKI67 FHA domain-interacting nucleolar
phosphoprotein-like" species:8355 "Xenopus laevis" [GO:0010923
"negative regulation of phosphatase activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 CTD:84365 HOVERGEN:HBG057796 KO:K14838
InterPro:IPR021043 Pfam:PF12196 EMBL:BC054288 EMBL:BC122487
RefSeq:NP_001183998.1 UniGene:Xl.13504 ProteinModelPortal:Q7SYS2
SMR:Q7SYS2 GeneID:398645 KEGG:xla:398645 Xenbase:XB-GENE-940537
Uniprot:Q7SYS2
Length = 278
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 54/135 (40%), Positives = 80/135 (59%)
Query: 16 VSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFS 75
V S+ +S D K DF RRK K V+YIG IP+ E ++ +F+
Sbjct: 6 VQSEKLLSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQLQEYFN 62
Query: 76 QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHV 135
QFGT+ RLR++R+KKTG SK + ++E+ +VA++VAD M+ YL E +L+ + PE V
Sbjct: 63 QFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKV 122
Query: 136 HPKLWRGFNHGY-KP 149
HP+L+ G N + KP
Sbjct: 123 HPRLFIGCNTRFRKP 137
>UNIPROTKB|E9PFS2 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018737 HGNC:HGNC:17838 IPI:IPI00908705
ProteinModelPortal:E9PFS2 SMR:E9PFS2 Ensembl:ENST00000409201
ArrayExpress:E9PFS2 Bgee:E9PFS2 Uniprot:E9PFS2
Length = 199
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/124 (37%), Positives = 78/124 (62%)
Query: 40 RRKLPEEKPLVNKA-AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
R+++ + K V+Y+ +P E ++ ++FSQFGT+ R R++R+K+TG SK +
Sbjct: 30 RKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYA 89
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECK 158
F+EF DVA++VA+ M+ YL E +L+ H +PPE VH +L++ +N +K + V K
Sbjct: 90 FVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSV--K 147
Query: 159 RQNK 162
R N+
Sbjct: 148 RYNR 151
>UNIPROTKB|Q9BYG3 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006461 "protein complex assembly" evidence=NAS] [GO:0009303
"rRNA transcription" evidence=NAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016072 "rRNA metabolic process" evidence=NAS]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB044971 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0006461 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471103 GO:GO:0000794
GO:GO:0009303 GO:GO:0010923 GO:GO:0016072 PDB:2AFF PDBsum:2AFF
CTD:84365 eggNOG:NOG244773 HOGENOM:HOG000242795 HOVERGEN:HBG057796
KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:AK291903 EMBL:AC018737 EMBL:BC012457
EMBL:BC022990 EMBL:BC024238 IPI:IPI00154590 RefSeq:NP_115766.3
UniGene:Hs.367842 ProteinModelPortal:Q9BYG3 SMR:Q9BYG3
DIP:DIP-28134N IntAct:Q9BYG3 MINT:MINT-1031770 STRING:Q9BYG3
PhosphoSite:Q9BYG3 DMDM:71151919 SWISS-2DPAGE:Q9BYG3 PaxDb:Q9BYG3
PeptideAtlas:Q9BYG3 PRIDE:Q9BYG3 DNASU:84365
Ensembl:ENST00000285814 GeneID:84365 KEGG:hsa:84365 UCSC:uc002tnk.3
GeneCards:GC02M122484 HGNC:HGNC:17838 HPA:CAB015382 MIM:611970
neXtProt:NX_Q9BYG3 PharmGKB:PA38470 InParanoid:Q9BYG3
PhylomeDB:Q9BYG3 EvolutionaryTrace:Q9BYG3 GenomeRNAi:84365
NextBio:74141 ArrayExpress:Q9BYG3 Bgee:Q9BYG3 CleanEx:HS_MKI67IP
Genevestigator:Q9BYG3 GermOnline:ENSG00000155438 Uniprot:Q9BYG3
Length = 293
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/124 (37%), Positives = 78/124 (62%)
Query: 40 RRKLPEEKPLVNKA-AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
R+++ + K V+Y+ +P E ++ ++FSQFGT+ R R++R+K+TG SK +
Sbjct: 30 RKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYA 89
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECK 158
F+EF DVA++VA+ M+ YL E +L+ H +PPE VH +L++ +N +K + V K
Sbjct: 90 FVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSV--K 147
Query: 159 RQNK 162
R N+
Sbjct: 148 RYNR 151
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 41/108 (37%), Positives = 72/108 (66%)
Query: 34 PLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGK 93
P + +K ++K L + ++Y+ R+P F+EKE+ +F+QFG ++ +R+ARNKKTG
Sbjct: 71 PKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGN 130
Query: 94 SKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWR 141
S+H+GF+EF + + A + ++M+ YLL H+LQV ++P KL++
Sbjct: 131 SRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK 178
>MGI|MGI:1915199 [details] [associations]
symbol:Mki67ip "Mki67 (FHA domain) interacting nucleolar
phosphoprotein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000794 "condensed nuclear
chromosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010923
"negative regulation of phosphatase activity" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915199 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000794 GO:GO:0010923 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX
InterPro:IPR021043 Pfam:PF12196 EMBL:AB056870 EMBL:AY030275
EMBL:AK019209 EMBL:AK077770 EMBL:BC058559 IPI:IPI00225912
IPI:IPI00608122 RefSeq:NP_080748.3 UniGene:Mm.280311
ProteinModelPortal:Q91VE6 SMR:Q91VE6 IntAct:Q91VE6 STRING:Q91VE6
PhosphoSite:Q91VE6 PaxDb:Q91VE6 PRIDE:Q91VE6
Ensembl:ENSMUST00000027626 Ensembl:ENSMUST00000112688 GeneID:67949
KEGG:mmu:67949 UCSC:uc007cic.2 UCSC:uc011wql.1 InParanoid:Q91VE6
NextBio:326050 Bgee:Q91VE6 Genevestigator:Q91VE6
GermOnline:ENSMUSG00000026377 Uniprot:Q91VE6
Length = 317
Score = 201 (75.8 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 44/140 (31%), Positives = 79/140 (56%)
Query: 35 LEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKS 94
++G ++ ++K +N+ V+Y+G +P E ++ + +QFG I R R++R+K+TG S
Sbjct: 29 IQGRTKKPQQKKKEKLNRG-VVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNS 87
Query: 95 KHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQ 154
K + F+EF DVA++VA+ M YL E +L +P + VH L+ N + +
Sbjct: 88 KGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPA 147
Query: 155 VECKRQNKR---IEAASIEY 171
V KR N++ ++ +EY
Sbjct: 148 V--KRYNRKRGHLQMLKMEY 165
Score = 47 (21.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 158 KRQNKRIEAASIEYECPEIVGYVMPAPKKI 187
K K++ A I+Y P +V +P PK I
Sbjct: 172 KLLRKKLAAKGIDYSFPSLV---LPKPKNI 198
>RGD|708462 [details] [associations]
symbol:Mki67ip "Mki67 (FHA domain) interacting nucleolar
phosphoprotein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000794 "condensed nuclear
chromosome" evidence=IEA;ISO] [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0010923 "negative regulation of phosphatase
activity" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:708462 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000794 GO:GO:0010923 HSSP:Q9BYG3 CTD:84365
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:BC086585 IPI:IPI00389917 RefSeq:NP_631925.2
UniGene:Rn.20901 ProteinModelPortal:Q5RJM0 SMR:Q5RJM0 STRING:Q5RJM0
Ensembl:ENSRNOT00000061619 GeneID:246042 KEGG:rno:246042
NextBio:623295 Genevestigator:Q5RJM0 GermOnline:ENSRNOG00000025701
Uniprot:Q5RJM0
Length = 271
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 47/132 (35%), Positives = 76/132 (57%)
Query: 41 RKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFI 100
+K EEK +N + V+Y+G +P E ++ + +QFG IRR R++R+K+TG S+ F F+
Sbjct: 34 KKKKEEK--LN-SGVVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFV 90
Query: 101 EFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQ 160
EF DVA++VA+ M YL E +L +P E VH L+ N + P + V+ Q
Sbjct: 91 EFESEDVAKIVAETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAVKRYNQ 150
Query: 161 NK-RIEAASIEY 171
+ ++ +EY
Sbjct: 151 KRGHLQMLKMEY 162
>WB|WBGene00011408 [details] [associations]
symbol:T04A8.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040019 "positive regulation of embryonic
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:Z35663 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040039 GO:GO:0040019 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 KO:K14838 PIR:T24423
RefSeq:NP_497959.1 ProteinModelPortal:Q22135 SMR:Q22135
STRING:Q22135 PaxDb:Q22135 EnsemblMetazoa:T04A8.6 GeneID:175614
KEGG:cel:CELE_T04A8.6 UCSC:T04A8.6 CTD:175614 WormBase:T04A8.6
HOGENOM:HOG000021353 InParanoid:Q22135 OMA:GYLMFEQ NextBio:888912
Uniprot:Q22135
Length = 307
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 43/108 (39%), Positives = 69/108 (63%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+++ +K + K V+ I RIP F+EKE+ +F QFG + R+R+ARN++TG K +
Sbjct: 17 PQKQDKVQKKQLKKIYVVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWA 76
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHG 146
++ F + VAE+ A++M+GYL+FE L ++ PE + PK R HG
Sbjct: 77 YVGFDNKAVAEIAAESMNGYLMFEQRLGCTVMKPELI-PKAMR---HG 120
>UNIPROTKB|C9J6C5 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242795 EMBL:AC018737 HGNC:HGNC:17838
IPI:IPI00916663 ProteinModelPortal:C9J6C5 SMR:C9J6C5 STRING:C9J6C5
Ensembl:ENST00000451734 ArrayExpress:C9J6C5 Bgee:C9J6C5
Uniprot:C9J6C5
Length = 166
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/88 (43%), Positives = 60/88 (68%)
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEH 134
+QFGT+ R R++R+K+TG SK + F+EF DVA++VA+ M+ YL E +L+ H +PPE
Sbjct: 34 TQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEK 93
Query: 135 VHPKLWRGFNHGYKPLDWVQVECKRQNK 162
VH +L++ +N +K + V KR N+
Sbjct: 94 VHKELFKDWNIPFKQPSYPSV--KRYNR 119
>FB|FBgn0038989 [details] [associations]
symbol:CG6937 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00390000011515 KO:K14838 FlyBase:FBgn0038989
RefSeq:NP_651066.2 UniGene:Dm.6006 ProteinModelPortal:Q9VCY1
SMR:Q9VCY1 IntAct:Q9VCY1 MINT:MINT-852149 STRING:Q9VCY1
PRIDE:Q9VCY1 EnsemblMetazoa:FBtr0084266 GeneID:42662
KEGG:dme:Dmel_CG6937 UCSC:CG6937-RA InParanoid:Q9VCY1 OMA:MDNYLMF
PhylomeDB:Q9VCY1 GenomeRNAi:42662 NextBio:829945
ArrayExpress:Q9VCY1 Bgee:Q9VCY1 Uniprot:Q9VCY1
Length = 356
Score = 205 (77.2 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 36/92 (39%), Positives = 60/92 (65%)
Query: 42 KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIE 101
K +KP + V+ + +P F+E+++ +F QFG + R+R+AR+ +TG SK + F+E
Sbjct: 39 KARPQKPKGPERGVVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVE 98
Query: 102 FSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
F P+VA+V AD M YL+F+ +++ IPPE
Sbjct: 99 FEYPEVAKVAADTMDNYLMFQKVVKATYIPPE 130
>DICTYBASE|DDB_G0275885 [details] [associations]
symbol:DDB_G0275885 "MKI67 FHA domain-interacting
nucleolar phosphoprotein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275885 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013 eggNOG:NOG244773
KO:K14838 RefSeq:XP_643547.2 ProteinModelPortal:Q86H55
EnsemblProtists:DDB0217706 GeneID:8620129 KEGG:ddi:DDB_G0275885
InParanoid:Q86H55 OMA:STILIRE Uniprot:Q86H55
Length = 269
Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K + + I +P+ FYE E++ FF QFG I+ +R+ R +GK F+ F D +VA++
Sbjct: 74 KGSTILIREVPKGFYETEIYKFFKQFGDIKCVRVDRTL-SGKFAKCAFVRFFDAEVAKIA 132
Query: 112 ADAMHGYLLFEHILQVHLI 130
+AM+GY++F L + ++
Sbjct: 133 KEAMNGYIMFGKKLDISIM 151
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G +P E ++H +FS+FG I ++I RN +TG+SK + F+ + P A DA
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 116 HG 117
HG
Sbjct: 105 HG 106
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G +P E ++H +FS+FG I ++I RN +TG+SK + F+ + P A DA
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA- 104
Query: 116 HG 117
HG
Sbjct: 105 HG 106
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
+++ V LY+G +P +E E+ F +FG + +R+ R++KTG+ K FGF+E S+
Sbjct: 55 DDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSE 114
Query: 105 PDVAEVVADAMHGYLLFEHILQV 127
+ + ++ + E L+V
Sbjct: 115 AGAQKAMVK-LNDFNFQERTLKV 136
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
+++ V LY+G +P +E E+ F +FG + +R+ R++KTG+ K FGF+E S+
Sbjct: 55 DDEQYVGPTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSE 114
Query: 105 PDVAEVVADAMHGYLLFEHILQV 127
+ + ++ + E L+V
Sbjct: 115 AGAQKAMVK-LNDFNFQERTLKV 136
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 135 (52.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 24/65 (36%), Positives = 43/65 (66%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++IG + +W E +H+ FSQ G + ++I RNK+TG+S+ +GF+EF+ AE V +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 116 HGYLL 120
+G ++
Sbjct: 146 NGTMM 150
>UNIPROTKB|I3LDD0 [details] [associations]
symbol:I3LDD0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 InterPro:IPR021043 Pfam:PF12196
Ensembl:ENSSSCT00000023542 Uniprot:I3LDD0
Length = 257
Score = 131 (51.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 44 PEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFS 103
PE++ L V+Y+G +P YE ++ A+FSQFGT+ RLR++R+KK G +
Sbjct: 3 PEKQKLT--PGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKKGVEREL------ 54
Query: 104 DPDVAEVVADAMHGYLLFEHILQVHLIPPE-HVH 136
+P+ A V A ++ +LL + LQ + + HVH
Sbjct: 55 EPETA-VRAKSL--FLLMFYCLQKKKMTTKPHVH 85
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 33/100 (33%), Positives = 50/100 (50%)
Query: 43 LPEEKPL-VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIE 101
LPE VNK VLY+G I + A F FG I + + + KT K K FGFI+
Sbjct: 3 LPESLTKGVNKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFID 62
Query: 102 FSDPDVAEVVADAMHGYLLFEHILQVHLIPP-EHVHPKLW 140
F P+ A D MH +F +++ + P ++++ +W
Sbjct: 63 FELPEDAADALDNMHESEIFGRVIKCSIAKPIKNLNKAVW 102
>UNIPROTKB|I3LAS7 [details] [associations]
symbol:I3LAS7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 InterPro:IPR021043 Pfam:PF12196
Ensembl:ENSSSCT00000029449 Uniprot:I3LAS7
Length = 250
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 44 PEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFS 103
PE++ L V+Y+G +P YE ++ A+FSQFGT+ RLR++R+KK G +
Sbjct: 3 PEKQKLT--PGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKKGVEREL------ 54
Query: 104 DPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGF 143
+P+ A V A ++ +LL + LQ VH +++ F
Sbjct: 55 EPETA-VRAKSL--FLLMFYCLQKKKTKVGQVHREVFCWF 91
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G P E+E+ FFS G I +RI +++TG+ + F FIEF++ A+ + M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 116 HGYLLFEHILQVHL 129
+G L+V+L
Sbjct: 67 NGAEFNGRPLRVNL 80
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N +L++G I EK ++ FS FG IR + + N T K++ F F+E+ + D A+
Sbjct: 5 NATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK- 63
Query: 111 VADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIE 165
A++ FE L I HV+ + +H YKP+ W+ E Q K E
Sbjct: 64 --HALYNMNNFE--LNGKRI---HVNYSKTKKADH-YKPI-WLD-EMYNQEKMKE 108
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N +L++G I EK ++ FS FG IR + + N T K++ F F+E+ + D A+
Sbjct: 5 NATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK- 63
Query: 111 VADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIE 165
A++ FE L I HV+ + +H YKP+ W+ E Q K E
Sbjct: 64 --HALYNMNNFE--LNGKRI---HVNYSKTKKADH-YKPI-WLD-EMYNQEKMKE 108
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/101 (25%), Positives = 49/101 (48%)
Query: 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88
TA L P E++ + LY+G +P E + F++FG + +R+ ++
Sbjct: 39 TALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKD 98
Query: 89 KKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
K+TGK + FGF+ + A+ DA++ + L+V +
Sbjct: 99 KRTGKRRGFGFVVIAASQ-AQTAIDALNEKEYMQRTLKVRI 138
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/101 (25%), Positives = 49/101 (48%)
Query: 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88
TA L P E++ + LY+G +P E + F++FG + +R+ ++
Sbjct: 39 TALICKLSTHPTLSSSEDEEASSTTKTLYVGNLPYKANESHVKELFAEFGEVFAVRLMKD 98
Query: 89 KKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
K+TGK + FGF+ + A+ DA++ + L+V +
Sbjct: 99 KRTGKRRGFGFVVIAASQ-AQTAIDALNEKEYMQRTLKVRI 138
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 126 (49.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 39 PRRKLPEEKPLVNKAAV-LYIGRIPRWFYEK-EMHAFFSQFGTIRRLRIARNKKTGKSKH 96
PR PE +P V AA +Y+G +P W + + FS+ G + R+ +++TG+S+
Sbjct: 191 PRGSRPERQPRVYDAAFRIYVGNLP-WDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 97 FGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
FGF++ S+ + V A+ G L ++V++
Sbjct: 250 FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV 282
>UNIPROTKB|I3LKX8 [details] [associations]
symbol:I3LKX8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011515
InterPro:IPR021043 Pfam:PF12196 Ensembl:ENSSSCT00000030296
Uniprot:I3LKX8
Length = 260
Score = 125 (49.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 44 PEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFS 103
PE++ L V+Y+G +P YE ++ A+FSQFGT+ RLR++R+KK G +
Sbjct: 3 PEKQKLT--PGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKKGVEREL------ 54
Query: 104 DPDVAEVVADAMHGYLLFEHILQ 126
+P+ A V A ++ +LL + LQ
Sbjct: 55 EPETA-VRAKSL--FLLMFYCLQ 74
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G P E ++ +FSQ G + +RI +++TG+ + F F+EF++ A+ D
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 116 HGYLLFEHILQVHL 129
+G L+V+L
Sbjct: 66 NGVDFNGRALRVNL 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G P E ++ +FSQ G + +RI +++TG+ + F F+EF++ A+ D
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 116 HGYLLFEHILQVHL 129
+G L+V+L
Sbjct: 66 NGVDFNGRALRVNL 79
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + ++ + F FG + ++ +K+T SK FGF+ F +PD A+V AM
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 116 HGYLLFEHILQVHLIPPEHVHP 137
+G+ + L+V L P+ P
Sbjct: 788 NGFQVGTKRLKVQLKKPKDSKP 809
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + E+ + FS FG + +RIA +K +G+S+ FGF++F++ A DAM
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 116 HGYLLFEHILQV 127
G L L++
Sbjct: 103 DGKGLLGRPLRI 114
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 123 (48.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 36 EGGPRRKLPEEKPLVNKAAV-LYIGRIPRWFYEK-EMHAFFSQFGTIRRLRIARNKKTGK 93
+ PR PE P V + A +Y+G +P W + + FS+ G + R+ +++TG+
Sbjct: 225 KAAPRGSRPERAPRVYEPAFRVYVGNLP-WDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 94 SKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
S+ FGF+ SD D A+ G L ++V++
Sbjct: 284 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106
V + L++G +P KE+ +FS++G + + +++ G SKH+GF+ FS D
Sbjct: 6 VRSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRD 62
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 106 (42.4 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
A L++G+IPR EK++ F QFG I L + ++K TG K F+ + D A
Sbjct: 6 AIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQ 65
Query: 113 DAMH 116
A+H
Sbjct: 66 SALH 69
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 117 (46.2 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + E+ + FS++G I + +ARN++T +S+ FGF+ F +PD A+ + M
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 116 HG 117
+G
Sbjct: 67 NG 68
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 104 (41.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 44 PEEKPLVNKAAV-LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
P P+ + A+ L+IG+IPR EK++ F +FG I L + +++ TG K F+ +
Sbjct: 41 PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTY 100
Query: 103 SDPDVAEVVADAMH 116
+ + A A+H
Sbjct: 101 CERESALKAQSALH 114
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 104 (41.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A L++ R+ + ++ + FS FG I+ R+ R+ +T + K FGFI F D A
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 113 DAMHGYLLFEHILQVHL 129
++ G ++ ++ V +
Sbjct: 66 KSLDGKIVDGRLIFVEV 82
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 104 (41.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G +P E+E+ +F+ G + +RI +++TG+ + F F+EFS+ A+ + +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 123 (48.4 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 25/94 (26%), Positives = 50/94 (53%)
Query: 36 EGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSK 95
+GGP + + + + + L++ IP +F + ++ F Q+G + ++ +K TG SK
Sbjct: 386 QGGPMGN-KKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSK 444
Query: 96 HFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
FGF+ + +P A + +HG ++ L+V L
Sbjct: 445 GFGFVSYDNPASANLAISNLHGQMMAGKKLKVSL 478
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 119 (46.9 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 44 PEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFS 103
P P + L + +P+ E E+H FS+FG IR+ +I R+++TG S +GF+++
Sbjct: 31 PPPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYV 90
Query: 104 DPDVAEVVADAMHGY 118
A + M GY
Sbjct: 91 SERQAAAAVNGMDGY 105
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 120 (47.3 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +YIG + E ++ A FSQ+G + + + R+K TGKSK F F+ + D +
Sbjct: 37 SAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAV 96
Query: 113 DAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYE 172
D +G L + +++V + E+ PK + K L W + C + EAA +E +
Sbjct: 97 DNFNGISLHKRMIRVDHVE-EYKVPKYKEDADDETKRL-WEE-GCAPKPVMREAAPMEVQ 153
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 120 (47.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G I E + + FS+ G + +++ +++TGK K +GFIEF D AEV +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 116 HGYLLFEHILQV 127
+GY L IL+V
Sbjct: 80 NGYELSGRILRV 91
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 122 (48.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/110 (28%), Positives = 57/110 (51%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+R +P ++ +K +++G I KE FFSQ+GTI ++ +K TG+S+ FG
Sbjct: 230 PKRAIPRDEQ--DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFG 287
Query: 99 FIEFSDPDVAEVVADAMHGYLLF-EHILQVHLIPPEHVHPKLWR-GFNHG 146
F+ + D + V + ++ F + +++ P H+ K G N+G
Sbjct: 288 FVTYDSADAVDRVCQ--NKFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNG 335
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 34 PLEGG-PRRKLPEEKPLVNKAAV-LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT 91
P+ G P P+ + ++ A+ L+IG+IPR EK++ F QFG I L + +++ T
Sbjct: 60 PMNGSEPISIHPDSGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYT 119
Query: 92 GKSKHFGFIEFSDPDVAEVVADAMH 116
G K F+ + + A +A+H
Sbjct: 120 GMHKGCAFLTYCARESAIKAQNALH 144
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q PV + R +T +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 48 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++A ++K K +GF+ F + AE DAM+G L
Sbjct: 108 NIFSAFGNILSCKVACDEKGPKG--YGFVHFQKQESAERAIDAMNGMFL 154
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q PV + R +T +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 48 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++A ++K K +GF+ F + AE DAM+G L
Sbjct: 108 NIFSAFGNILSCKVACDEKGPKG--YGFVHFQKQESAERAIDAMNGMFL 154
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 115 (45.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q PV + R +T +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 48 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++A ++K K +GF+ F + AE DAM+G L
Sbjct: 108 NIFSAFGNILSCKVACDEKGPKG--YGFVHFQKQESAERAIDAMNGMFL 154
>UNIPROTKB|G4N6H0 [details] [associations]
symbol:MGG_03722 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001234 RefSeq:XP_003716159.1 ProteinModelPortal:G4N6H0
EnsemblFungi:MGG_03722T0 GeneID:2676663 KEGG:mgr:MGG_03722
Uniprot:G4N6H0
Length = 648
Score = 122 (48.0 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE 109
V++ +V ++G +PR E+++ FS GT+ R++I + T + F FIEF PD E
Sbjct: 364 VDRRSV-FVGNLPRDITEEQVADLFSAIGTVNRVQIIKRTGTTIEQPFAFIEFDRPDTPE 422
Query: 110 VVADAMHGYL 119
A+HG++
Sbjct: 423 AAIAALHGFI 432
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 119 (46.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +Y+G IP E ++ A FSQ+G I + + R+K TGKSK F F+ + D +
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 113 DAMHGYLLFEHILQV 127
D ++G L+ ++V
Sbjct: 95 DNLNGALVLGRTIKV 109
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 101 (40.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
LY+G +P +++ S+FG + R+ K TG+S+ +GFIE D D AE +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDED-AEKFMTGL 63
Query: 116 HG 117
+G
Sbjct: 64 NG 65
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 101 (40.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G + E+ +FF Q+G I ++ +++TG+SK F FI + D A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 116 HGYLLFEHILQVHL 129
+G L ++V++
Sbjct: 80 NGIDLQGRKIRVNI 93
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 101 (40.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G + E+ +FF Q+G I ++ +++TG+SK F FI + D A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 116 HGYLLFEHILQVHL 129
+G L ++V++
Sbjct: 80 NGIDLQGRKIRVNI 93
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 101 (40.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
LY+G +P +++ S+FG + R+ K TG+S+ +GFIE D D AE +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDED-AEKFMTGL 63
Query: 116 HG 117
+G
Sbjct: 64 NG 65
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 121 (47.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + DP V ++ A+
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
+G + + L V + PK
Sbjct: 437 NGIKMGDKTLTVRRAIQGAIQPK 459
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 118 (46.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K +++G + EK++ FFSQFG I + + +K TGK + FGF+ F D D A+
Sbjct: 97 KVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADK- 155
Query: 112 ADAMHGYLLFEHILQV 127
A + +++ H ++V
Sbjct: 156 AVVLKFHMINGHKVEV 171
>UNIPROTKB|I3L1D4 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
Ensembl:ENST00000570626 Bgee:I3L1D4 Uniprot:I3L1D4
Length = 189
Score = 113 (44.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 81 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 139
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG 117
QFG I + I N++ G SK FGF+ F + A+ + +HG
Sbjct: 140 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHG 180
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
LY+G +P E + FS+ G++ +R+ ++K TGK + FGF+E + D+ + ++
Sbjct: 73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKAIS 129
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
LY+G +P E + FS+ G++ +R+ ++K TGK + FGF+E + D+ + ++
Sbjct: 73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDKAIS 129
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 111 (44.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 33/121 (27%), Positives = 56/121 (46%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
LY+G + E +HA F FG I+ ++ ++ K + FGF+ F + + A D M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYK--PLDWVQVEC--KRQNKRIEAASIEY 171
G L+ +L V+ PE + +G G+ PL W + +RQ + E ++
Sbjct: 75 DGAELYGRVLTVNYALPEKI-----KGGEQGWAAHPL-WADADTWFERQQQEKEILKMQA 128
Query: 172 E 172
E
Sbjct: 129 E 129
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 116 (45.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A +YIG +P E ++ FSQ+G + + R+K+TGKS+ F F+++ D ++ D
Sbjct: 33 AYIYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVD 92
Query: 114 AMHGYLLFEHILQV 127
+ G + +L+V
Sbjct: 93 NLGGATVLGRVLRV 106
>UNIPROTKB|E7EV40 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010139
HGNC:HGNC:2685 IPI:IPI00927411 ProteinModelPortal:E7EV40 SMR:E7EV40
Ensembl:ENST00000454457 ArrayExpress:E7EV40 Bgee:E7EV40
Uniprot:E7EV40
Length = 204
Score = 113 (44.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 34/111 (30%), Positives = 60/111 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 70 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 125
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNHGYKP 149
+D DV ++V + HG L ++ + HV P+ FNH P
Sbjct: 126 FNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPRPLV-FNHPPPP 175
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 116 (45.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 32/118 (27%), Positives = 53/118 (44%)
Query: 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88
T++F E G P ++ + L++G +P ++ F G + + + +
Sbjct: 66 TSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYD 125
Query: 89 KKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHG 146
K TG+S+ FGF+ S E A +GY L L+V+ PP PK GF+ G
Sbjct: 126 KITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP---PKREDGFSRG 180
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 117 (46.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 31 DFLPLEGGPRR--KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRL-RIAR 87
+ + L G P R K + ++ A ++IG + EK ++ FS FG I + +I R
Sbjct: 94 NMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMR 153
Query: 88 NKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHG 146
+ +TGKSK F FI F+ + ++ DAM+G L + V + K +G HG
Sbjct: 154 DPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISV-----SYAFKKDHKGERHG 207
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 119 (46.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FGT+ ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 574 NGFQIGMKRLKVQLKRPK 591
Score = 112 (44.5 bits), Expect = 0.00037, P = 0.00037
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 34 PLEGGPRRKL-PEEKPLVNKAAV-LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT 91
P+ G + PE + ++ A+ L+IG+IPR EK++ F QFG I L + +++ T
Sbjct: 114 PMNGSESISIHPENGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYT 173
Query: 92 GKSKHFGFIEFSDPDVAEVVADAMH 116
G K F+ + + A +A+H
Sbjct: 174 GMHKGCAFLTYCARESAIKAQNALH 198
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 98 (39.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 48 PLVNKAAV-LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106
P+ + A+ L++G+IPR E+++ F +FG I L + +++ TG K F+ + D
Sbjct: 10 PMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARD 69
Query: 107 VAEVVADAMH 116
A A+H
Sbjct: 70 SALKAQSALH 79
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 98 (39.6 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 29/106 (27%), Positives = 55/106 (51%)
Query: 19 QLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMHAFF 74
Q P ++R DT +F ++G P R + ++ P + K+ V ++I + + K ++ F
Sbjct: 4 QQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 63
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
S FG I ++ ++ G SK + F+ F + A+ + M+G LL
Sbjct: 64 SAFGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLL 107
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 106 (42.4 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +++ P E ++ FSQ+G + + + R+ KTGKSK F F+ + D +
Sbjct: 33 SAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAV 92
Query: 113 DAMHGYLLFEHILQV-HLI---PP---EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
D ++G + + L+V H+ PP E + + R + G P +Q K + K
Sbjct: 93 DNLNGIKILDRTLRVDHVADYKPPKENEKMDEETLRLYMEGCAPKPQLQ-HIKTEKK 148
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 117 (46.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG I ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 337 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 396
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 397 NGFQIGMKRLKVQLKRPKDPGHP 419
>UNIPROTKB|F8VZY7 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01022282 ProteinModelPortal:F8VZY7 SMR:F8VZY7
Ensembl:ENST00000551752 ArrayExpress:F8VZY7 Bgee:F8VZY7
Uniprot:F8VZY7
Length = 263
Score = 114 (45.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 79 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 138 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 114 (45.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 44 PEEKPLVNKAAV--LYIGRIPRWFYEKE-MHAFFSQFGTIRRLRIARNKKTGKSKHFGFI 100
PEE+ + + + + L+IG I W ++E + +F ++G + I R++ TG+++ FGFI
Sbjct: 3 PEEQKMESASDLGKLFIGGIS-WDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Query: 101 EFSDPDVAE-VVAD 113
F+DP VAE V+ D
Sbjct: 62 VFADPSVAERVIMD 75
Score = 37 (18.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 119 LLFEHILQVHLIPPEH 134
+L H +HLI P H
Sbjct: 97 VLKRHASPMHLISPSH 112
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 106 (42.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN---KKTGKSKHFGFIEFSDPDVAEV 110
A LY+G +P E +H F FG I +++ +N K + F ++E+ D D A+
Sbjct: 9 ATLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKE 68
Query: 111 VADAMHGYLLFEHILQVHLI-PPEHVHPKL 139
D M F I++VH PP+ + L
Sbjct: 69 AMDNMDQSEFFGRIIKVHAAKPPKSANEGL 98
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 111 (44.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q PV + R +T +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 48 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++A ++K K +GF+ F + AE D M+G L
Sbjct: 108 NIFSAFGNILSCKVACDEKGPKG--YGFVHFQKQESAERAIDVMNGMFL 154
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 111 (44.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q PV + R +T +F + G P R + ++ P + K+ V ++I + + K ++
Sbjct: 48 VNYQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALY 107
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++A ++K K +GF+ F + AE DA++G L
Sbjct: 108 NIFSAFGNILSCKVACDEKGPKG--YGFVHFQKQESAERAIDALNGMFL 154
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 97 (39.2 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
LY+G + + ++ F+ +GT++ ++ ++ TG+S+ FGF+E A+ +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 116 HGYLLFEHILQVHLI-PPE 133
+G + L V+ PPE
Sbjct: 65 NGKEMDGRNLMVNEARPPE 83
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 117 (46.2 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG I ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 461
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 462 NGFQIGMKRLKVQLKRPKDPGHP 484
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 117 (46.2 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG I ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 462 NGFQIGMKRLKVQLKRPKDPGHP 484
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 117 (46.2 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG I ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 406 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAM 465
Query: 116 HGYLLFEHILQVHLIPPEHV-HP 137
+G+ + L+V L P+ HP
Sbjct: 466 NGFQIGMKRLKVQLKRPKDPGHP 488
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 114 (45.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP 105
++IGR+P E E+ +F +FG I ++RI ++K T KSK + FI F DP
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 110 (43.8 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + EK + A F ++G I + + ++++T KS+ F F+ F P A+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 116 HGYLLF---EHILQVHL 129
+G LL+ E +++ HL
Sbjct: 70 NGKLLYHVEEIVMEAHL 86
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 115 (45.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 25/91 (27%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
+P+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 258 IPQQQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 317
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 318 DNPTSAQAAIQAMNGFQIGMKRLKVQLKRPK 348
>UNIPROTKB|F1RKX4 [details] [associations]
symbol:RBFOX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005802 GeneTree:ENSGT00390000013767
EMBL:CU464000 EMBL:CU694874 Ensembl:ENSSSCT00000008677 OMA:PPENTEN
Uniprot:F1RKX4
Length = 234
Score = 112 (44.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 22 VSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR 81
VS T D P +G P+ + E ++ L++ IP F + ++ F QFG I
Sbjct: 89 VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 148
Query: 82 RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
+ I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 149 DVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 193
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 107 (42.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A ++IG +P E ++ FSQ+G + + + R+KKTGKSK F F+ + D +
Sbjct: 35 SAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94
Query: 113 DAMHGYLLFEHILQV-HLI---PPE 133
D +G + ++V H+ PP+
Sbjct: 95 DNFNGIKIKGRTIRVDHVANYRPPK 119
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 107 (42.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
L +K ++ +V Y+G + +E+ + F+ G++ R+ I +K TG K F +IEF
Sbjct: 45 LRNDKESIDAQSV-YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVH-PKLWRGFNHG 146
S+P + A ++G +L E L+V P+ + P + RG G
Sbjct: 104 SEPSLVPN-ALLLNGSMLHERPLKV---TPKRTNVPGMSRGRGRG 144
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 116 (45.9 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 37/116 (31%), Positives = 56/116 (48%)
Query: 16 VSSQLPVSSDRKDTADFL--PLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAF 73
+ S P+SS + + PL G + E P + A L+I IPR F ++E+ A
Sbjct: 312 IVSPRPLSSSPGSISPGMSTPLGIGLSSVVQTEGP---EGANLFIYNIPREFGDQELAAA 368
Query: 74 FSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
F FG + ++ +K TG SK FGF+ + A+ D M+G L L+V L
Sbjct: 369 FQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 115 (45.5 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/95 (27%), Positives = 50/95 (52%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P +P+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FG
Sbjct: 261 PPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 320
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
F+ F +P A+ AM+G+ + L+V L P+
Sbjct: 321 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 355
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 114 (45.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K L++G + E ++ FSQFGT+ + I +K++GK + FGF+ F + D A+
Sbjct: 101 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 160
Query: 112 ADAMHGYLLFEHILQVH-LIPPEHVH 136
A + + + H ++V +P E +H
Sbjct: 161 A-VVKFHPIQGHRVEVKKAVPKEDIH 185
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 114 (45.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K L++G + E ++ FSQFGT+ + I +K++GK + FGF+ F + D A+
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
Query: 112 ADAMHGYLLFEHILQVH-LIPPEHVH 136
A + + + H ++V +P E +H
Sbjct: 156 A-VVKFHPIQGHRVEVKKAVPKEDIH 180
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 96 (38.9 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 67 EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-I 124
E ++ F FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H I
Sbjct: 50 ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLI 107
Query: 125 LQVHLIPP 132
L V P
Sbjct: 108 LNVEWAKP 115
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 114 (45.2 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K L++G + E ++ FSQFGT+ + I +K++GK + FGF+ F + D A+
Sbjct: 101 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 160
Query: 112 ADAMHGYLLFEHILQVH-LIPPEHVH 136
A + + + H ++V +P E +H
Sbjct: 161 A-VVKFHPIQGHRVEVKKAVPKEDIH 185
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 115 (45.5 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + +W E + + F+Q G ++ RNK TG+S+ +GFIEF VAE V
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 116 HG 117
+G
Sbjct: 122 NG 123
>MGI|MGI:1926224 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C.
elegans) 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005802 "trans-Golgi network" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0050885
"neuromuscular process controlling balance" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1926224 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005802 GO:GO:0043484 Reactome:REACT_24972 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ OrthoDB:EOG4NVZKS
ChiTaRS:RBFOX1 EMBL:AF107204 EMBL:AY659954 EMBL:AY659955
EMBL:AY659956 EMBL:AY659957 EMBL:AY659958 EMBL:AF191501
EMBL:AB041596 EMBL:AK134833 EMBL:BC059002 IPI:IPI00121045
IPI:IPI00605392 IPI:IPI00606138 IPI:IPI00607041 IPI:IPI00885248
IPI:IPI00886040 IPI:IPI00886174 RefSeq:NP_067452.2
RefSeq:NP_899011.2 UniGene:Mm.370334 ProteinModelPortal:Q9JJ43
SMR:Q9JJ43 STRING:Q9JJ43 PhosphoSite:Q9JJ43 PaxDb:Q9JJ43
PRIDE:Q9JJ43 Ensembl:ENSMUST00000056416 Ensembl:ENSMUST00000115841
GeneID:268859 KEGG:mmu:268859 UCSC:uc007ycb.2 UCSC:uc007ycc.2
UCSC:uc007ycf.2 UCSC:uc007ycg.2 UCSC:uc007ych.2 UCSC:uc007yci.2
NextBio:392539 Bgee:Q9JJ43 CleanEx:MM_A2BP1 Genevestigator:Q9JJ43
GermOnline:ENSMUSG00000008658 Uniprot:Q9JJ43
Length = 396
Score = 115 (45.5 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 78 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMF 136
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 137 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 188
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 114 (45.2 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 246 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 305
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 306 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 336
>UNIPROTKB|Q92904 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0007281 "germ cell development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 EMBL:CH471055 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0003730
GO:GO:0007281 GO:GO:0005844 GO:GO:0045836 eggNOG:NOG260394
GO:GO:0045948 OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573
HOGENOM:HOG000246400 EMBL:U65918 EMBL:U66726 EMBL:U66078
EMBL:U77476 EMBL:U77467 EMBL:U77468 EMBL:U77469 EMBL:U77470
EMBL:U77471 EMBL:U77472 EMBL:U77473 EMBL:U77474 EMBL:U77475
EMBL:AK303026 EMBL:BX648638 EMBL:AC010139 EMBL:BC027595
IPI:IPI00871660 RefSeq:NP_001177740.1 RefSeq:NP_001342.2
UniGene:Hs.131179 ProteinModelPortal:Q92904 SMR:Q92904
IntAct:Q92904 STRING:Q92904 PhosphoSite:Q92904 DMDM:27805453
PRIDE:Q92904 DNASU:1618 Ensembl:ENST00000250863
Ensembl:ENST00000399444 GeneID:1618 KEGG:hsa:1618 UCSC:uc003cbb.3
GeneCards:GC03M016603 HGNC:HGNC:2685 HPA:HPA019593 HPA:HPA019777
MIM:601486 neXtProt:NX_Q92904 PharmGKB:PA27155 OMA:YVIPPAY
GenomeRNAi:1618 NextBio:6646 ArrayExpress:Q92904 Bgee:Q92904
CleanEx:HS_DAZL Genevestigator:Q92904 GermOnline:ENSG00000092345
Uniprot:Q92904
Length = 295
Score = 113 (44.8 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 34/111 (30%), Positives = 60/111 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPKLWRGFNHGYKP 149
+D DV ++V + HG L ++ + HV P+ FNH P
Sbjct: 88 FNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPRPLV-FNHPPPP 137
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 118 (46.6 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
LYIG +P + + FS FG I ++ +++ TG SK +GF++++D +A AM
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 116 HGYLLFEHILQVHLI---PPEHVHP 137
+GY L V + PP P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAPP 566
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 95 (38.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + R EK + A F + G I + + +++ T KS+ F FI F +P A+ A M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 116 HGYLLFEHIL 125
+G ++ + +L
Sbjct: 69 NGKMMVDTLL 78
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 95 (38.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + EK + A F ++G I + + ++++T KS+ F F+ F P A+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 116 HGYLL 120
+G ++
Sbjct: 72 NGKMM 76
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 95 (38.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
A LY+G + E ++ FS GT+ + I + +TG+SK G++ + A+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 113 DAMHGYLLFEHILQVHLIPPE 133
+ + G LL ++ V + P+
Sbjct: 62 ETLDGALLRNRVITVSVARPQ 82
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 95 (38.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
A LY+G + E ++ FS GT+ + I + +TG+SK G++ + A+
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 113 DAMHGYLLFEHILQVHLIPPE 133
+ + G LL ++ V + P+
Sbjct: 62 ETLDGALLRNRVITVSVARPQ 82
>RGD|1311210 [details] [associations]
symbol:Rbfox1 "RNA binding protein, fox-1 homolog (C. elegans)
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005802 "trans-Golgi network" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0050885 "neuromuscular process controlling
balance" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 RGD:1311210 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS IPI:IPI00949707
ProteinModelPortal:D4A2J5 Ensembl:ENSRNOT00000065101
UCSC:RGD:1311210 ArrayExpress:D4A2J5 Uniprot:D4A2J5
Length = 367
Score = 114 (45.2 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 71 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 129
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 130 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 181
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 108 (43.1 bits), Expect = 0.00010, P = 0.00010
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P +P+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FG
Sbjct: 99 PPPMIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 158
Query: 99 FIEFSDPDVAEVVADAMHGY 118
F+ F +P A+ AM+G+
Sbjct: 159 FVSFDNPASAQTAIQAMNGF 178
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+R +P E+ K A +++G +P E+E FF+QFG + + +K TG+ + FG
Sbjct: 234 PKRAIPREEQ--EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFG 291
Query: 99 FIEFSDPDVAE 109
F+ + + E
Sbjct: 292 FVTYENESAVE 302
>UNIPROTKB|F1Q2X1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 EMBL:AAEX03004562 EMBL:AAEX03004563 EMBL:AAEX03004564
GeneID:609116 KEGG:cfa:609116 RefSeq:XP_863775.1
Ensembl:ENSCAFT00000030298 Uniprot:F1Q2X1
Length = 395
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 99 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 157
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 158 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209
>UNIPROTKB|Q9NWB1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005802
"trans-Golgi network" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0050658 "RNA transport" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005802 GO:GO:0043484
GO:GO:0050658 eggNOG:NOG258617 KO:K14946 CTD:54715
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 OMA:PPDTMAQ
EMBL:AF107203 EMBL:AF229057 EMBL:AF094849 EMBL:AF109106
EMBL:AF109120 EMBL:AF109107 EMBL:AF109108 EMBL:AF109109
EMBL:AF109110 EMBL:AF109111 EMBL:AF109112 EMBL:AF109113
EMBL:AF109114 EMBL:AF109115 EMBL:AF109116 EMBL:AF109117
EMBL:AF109118 EMBL:AF109119 EMBL:AF448859 EMBL:AK001027
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 EMBL:BC113691 IPI:IPI00152050
IPI:IPI00170678 IPI:IPI00170712 IPI:IPI01021020 IPI:IPI01022902
RefSeq:NP_001135805.1 RefSeq:NP_001135806.1 RefSeq:NP_061193.2
RefSeq:NP_665898.1 RefSeq:NP_665899.1 RefSeq:NP_665900.1
UniGene:Hs.459842 PDB:2ERR PDBsum:2ERR ProteinModelPortal:Q9NWB1
SMR:Q9NWB1 IntAct:Q9NWB1 MINT:MINT-2854938 STRING:Q9NWB1
PhosphoSite:Q9NWB1 DMDM:166897979 PaxDb:Q9NWB1 PRIDE:Q9NWB1
Ensembl:ENST00000311745 Ensembl:ENST00000355637
Ensembl:ENST00000436368 Ensembl:ENST00000547338
Ensembl:ENST00000550418 Ensembl:ENST00000553186 GeneID:54715
KEGG:hsa:54715 UCSC:uc002cys.2 UCSC:uc002cyt.2 UCSC:uc002cyw.2
UCSC:uc002cyx.2 UCSC:uc002cyy.2 GeneCards:GC16P006033
HGNC:HGNC:18222 HPA:HPA040809 MIM:605104 neXtProt:NX_Q9NWB1
ChiTaRS:RBFOX1 EvolutionaryTrace:Q9NWB1 GenomeRNAi:54715
NextBio:57277 ArrayExpress:Q9NWB1 Bgee:Q9NWB1 Genevestigator:Q9NWB1
GermOnline:ENSG00000078328 Uniprot:Q9NWB1
Length = 397
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 79 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 137
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 138 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189
>UNIPROTKB|J3KNW3 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 ProteinModelPortal:J3KNW3 Ensembl:ENST00000340209
Uniprot:J3KNW3
Length = 402
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 84 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 142
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 143 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 194
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ ++F Q+GT++ ++I ++ TG SK +GF+ F
Sbjct: 28 LPEGKIMPN---TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSF 83
Query: 103 SDP-DVAEVVAD--AMHG 117
D DV ++V ++HG
Sbjct: 84 LDNVDVQKIVESQISVHG 101
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ ++F Q+GT++ ++I ++ TG SK +GF+ F
Sbjct: 28 LPEGKIMPN---TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSF 83
Query: 103 SDP-DVAEVVAD--AMHG 117
D DV ++V ++HG
Sbjct: 84 LDNVDVQKIVESQISVHG 101
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG I E+ + +FS FG + I +++ TG+++ FGF+ F+DP VAE+V
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 116 H 116
H
Sbjct: 68 H 68
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 109 (43.4 bits), Expect = 0.00012, P = 0.00012
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|F1Q2W1 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 CTD:54715 InterPro:IPR025670
Pfam:PF12414 OMA:PPDTMAQ EMBL:AAEX03004562 EMBL:AAEX03004563
EMBL:AAEX03004564 RefSeq:XP_851461.1 ProteinModelPortal:F1Q2W1
Ensembl:ENSCAFT00000030301 GeneID:609116 KEGG:cfa:609116
Uniprot:F1Q2W1
Length = 418
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 99 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 157
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 158 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209
>UNIPROTKB|B7Z1U7 [details] [associations]
symbol:RBFOX1 "RNA binding protein fox-1 homolog"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AC005774 EMBL:AC006075
EMBL:AC006112 EMBL:AC007012 EMBL:AC007217 EMBL:AC007222
EMBL:AC007223 EMBL:AC009135 EMBL:AC022206 EMBL:AC023829
EMBL:AC027683 EMBL:AC079410 EMBL:AC125796 EMBL:AC131390
UniGene:Hs.459842 HGNC:HGNC:18222 ChiTaRS:RBFOX1 EMBL:AK293951
IPI:IPI00910807 SMR:B7Z1U7 STRING:B7Z1U7 Ensembl:ENST00000422070
UCSC:uc010uxz.1 Uniprot:B7Z1U7
Length = 425
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 122 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 180
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 181 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 232
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 112 (44.5 bits), Expect = 0.00012, P = 0.00012
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + EK +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 331 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 390
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 391 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 421
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q P ++R DT +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 12 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 71
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE 109
FS FG I ++ ++ G SK +GF+ F + AE
Sbjct: 72 DTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAE 107
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP-DVAEVVADA 114
++IG + + +FS+FG IR + R+ T +S+ FGF+ F+DP V +V+
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82
Query: 115 MH 116
H
Sbjct: 83 HH 84
>UNIPROTKB|F1M0Z9 [details] [associations]
symbol:F1M0Z9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 IPI:IPI00393308
Ensembl:ENSRNOT00000034921 Uniprot:F1M0Z9
Length = 71
Score = 94 (38.1 bits), Expect = 0.00013, P = 0.00013
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
+FS+FG IR + R+ T +S+ FGF+ F+DP + V H + L + + P
Sbjct: 6 YFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH-HELDSKTIDPKVAFP 64
Query: 133 EHVHPKL 139
PK+
Sbjct: 65 RRAQPKV 71
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
Identities = 35/141 (24%), Positives = 65/141 (46%)
Query: 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
L + +Y+ +P +++ FS++G + ++ I ++K T KSK FI F D + A
Sbjct: 5 LAPSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESA 64
Query: 109 EVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAAS 168
+ + A++ LF +++ + + R N+ K + EC EA
Sbjct: 65 QNCSRALNNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCY---ECG------EAGH 115
Query: 169 IEYECPE-IVGYVMPAPKKIK 188
+ Y CP+ ++G P KK K
Sbjct: 116 LSYACPKNMLGEREPPKKKEK 136
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + EM F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 429 NGFQIGMKRLKVQLKRPK 446
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 364 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 423
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 424 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 454
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 364 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 423
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 424 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 454
>UNIPROTKB|F8VZG9 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484 InterPro:IPR025670
Pfam:PF12414 EMBL:AC005774 EMBL:AC006075 EMBL:AC006112
EMBL:AC007012 EMBL:AC007217 EMBL:AC007222 EMBL:AC007223
EMBL:AC009135 EMBL:AC022206 EMBL:AC023829 EMBL:AC027683
EMBL:AC079410 EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222
ChiTaRS:RBFOX1 IPI:IPI01022127 ProteinModelPortal:F8VZG9 SMR:F8VZG9
Ensembl:ENST00000547372 ArrayExpress:F8VZG9 Bgee:F8VZG9
Uniprot:F8VZG9
Length = 466
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFF 74
+ S+Q VS T D P +G P+ + E ++ L++ IP F + ++ F
Sbjct: 122 DTSAQT-VSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMF 180
Query: 75 SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
QFG I + I N++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 181 GQFGKILDVEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 232
>UNIPROTKB|Q4V7Y4 [details] [associations]
symbol:dazl-b "Deleted in azoospermia-like-B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0007281 "germ cell
development" evidence=ISS] [GO:0008354 "germ cell migration"
evidence=ISS] [GO:0008494 "translation activator activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=ISS]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0003723
GO:GO:0008494 GO:GO:0007281 GO:GO:0045948 GO:GO:0008354
UniGene:Xl.311 HSSP:Q15427 Xenbase:XB-GENE-6078612
HOVERGEN:HBG000573 GO:GO:0032019 EMBL:BC071023 EMBL:BC097658
ProteinModelPortal:Q4V7Y4 Uniprot:Q4V7Y4
Length = 286
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ FF++FG ++ ++I ++ TG SK +GFI F
Sbjct: 25 LPEGKIMPN---TVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDR-TGVSKGYGFISF 80
Query: 103 SDP-DVAEVVAD--AMHG 117
SD D+ ++V + HG
Sbjct: 81 SDEVDIQKIVKSQISFHG 98
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 385 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 444
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 445 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 475
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 386 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 445
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 446 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 476
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 386 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 445
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
+P A+ AM+G+ + L+V L P+
Sbjct: 446 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 476
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 109 (43.4 bits), Expect = 0.00015, P = 0.00015
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + E+ + FS++GTI ++ + R+++T +S+ FGF+ F +P+ A+ AM
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 116 HG 117
+G
Sbjct: 85 NG 86
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 36/121 (29%), Positives = 56/121 (46%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYECP 174
M+ LF ++V+L P + R + DW++ K K +E E E P
Sbjct: 67 MNESELFGRTIRVNLAKPMRIKEGSSRPV---WSDDDWLK---KFSGKTLEENK-EEEGP 119
Query: 175 E 175
E
Sbjct: 120 E 120
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
NK A +Y+G + F E M +Q G + L + ++ + + +GF+EF P+ A+
Sbjct: 9 NKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADY 68
Query: 111 VADAMHGYLLFEHILQVH 128
A A++G +F +++V+
Sbjct: 69 AARALNGIRVFGKVIRVN 86
>UNIPROTKB|F1N6W2 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 OMA:DRTQNRS CTD:85313
EMBL:DAAA02027047 EMBL:DAAA02027048 EMBL:DAAA02027049
EMBL:DAAA02027050 IPI:IPI00716338 RefSeq:NP_001193016.1
UniGene:Bt.9312 ProteinModelPortal:F1N6W2
Ensembl:ENSBTAT00000022582 GeneID:535676 KEGG:bta:535676
NextBio:20876809 ArrayExpress:F1N6W2 Uniprot:F1N6W2
Length = 492
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEE--KPLVNKAAVLYIGRIPRWFYEKEMHA 72
E ++ + K A L + G LP+ KP N VL++ ++ ++++
Sbjct: 206 EEVEEIKAEKEAKTQAILLEMVGD----LPDADIKPPEN---VLFVCKLNPVTTDEDLEI 258
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
FS+FG IR + R+ KTG+S + FIEF + E M L+ + ++H+
Sbjct: 259 IFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDR--RIHVDFS 316
Query: 133 EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
+ V W+G Y D+ + E K Q+K
Sbjct: 317 QSVAKVKWKGKGGKYTKSDFKEYE-KEQDK 345
>UNIPROTKB|Q8WUA2 [details] [associations]
symbol:PPIL4 "Peptidyl-prolyl cis-trans isomerase-like 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 EMBL:CH471051
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 EMBL:AL078581 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS EMBL:AF357880 EMBL:AK315388 EMBL:BX537536
EMBL:AL357619 EMBL:BC020986 IPI:IPI00642862 RefSeq:NP_624311.1
UniGene:Hs.740616 ProteinModelPortal:Q8WUA2 SMR:Q8WUA2
IntAct:Q8WUA2 MINT:MINT-1182736 STRING:Q8WUA2 PhosphoSite:Q8WUA2
DMDM:74760546 PaxDb:Q8WUA2 PeptideAtlas:Q8WUA2 PRIDE:Q8WUA2
DNASU:85313 Ensembl:ENST00000253329 GeneID:85313 KEGG:hsa:85313
UCSC:uc003qmo.2 CTD:85313 GeneCards:GC06M149867 HGNC:HGNC:15702
HPA:HPA031600 MIM:607609 neXtProt:NX_Q8WUA2 PharmGKB:PA33590
HOVERGEN:HBG057731 InParanoid:Q8WUA2 OrthoDB:EOG4QVCC7
PhylomeDB:Q8WUA2 GenomeRNAi:85313 NextBio:75805 ArrayExpress:Q8WUA2
Bgee:Q8WUA2 CleanEx:HS_PPIL4 Genevestigator:Q8WUA2
GermOnline:ENSG00000131013 Uniprot:Q8WUA2
Length = 492
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEE--KPLVNKAAVLYIGRIPRWFYEKEMHA 72
E ++ + K A L + G LP+ KP N VL++ ++ ++++
Sbjct: 206 EEVEEIKAEKEAKTQAILLEMVGD----LPDADIKPPEN---VLFVCKLNPVTTDEDLEI 258
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
FS+FG IR + R+ KTG+S + FIEF + E M L+ + ++H+
Sbjct: 259 IFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDR--RIHVDFS 316
Query: 133 EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
+ V W+G Y D+ + E K Q+K
Sbjct: 317 QSVAKVKWKGKGGKYTKSDFKEYE-KEQDK 345
>MGI|MGI:1914668 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006457
"protein folding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1914668
GO:GO:0005634 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00670000097658 HOGENOM:HOG000186284
KO:K12735 OMA:DRTQNRS CTD:85313 HOVERGEN:HBG057731
OrthoDB:EOG4QVCC7 EMBL:AK011443 EMBL:AK014406 EMBL:AK167258
EMBL:BC079912 IPI:IPI00110280 RefSeq:NP_080417.2 UniGene:Mm.38927
ProteinModelPortal:Q9CXG3 SMR:Q9CXG3 PhosphoSite:Q9CXG3
PaxDb:Q9CXG3 PRIDE:Q9CXG3 Ensembl:ENSMUST00000015901 GeneID:67418
KEGG:mmu:67418 UCSC:uc007eip.2 InParanoid:Q9CXG3 NextBio:324510
Bgee:Q9CXG3 CleanEx:MM_PPIL4 Genevestigator:Q9CXG3
GermOnline:ENSMUSG00000015757 Uniprot:Q9CXG3
Length = 492
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEE--KPLVNKAAVLYIGRIPRWFYEKEMHA 72
E ++ + K A L + G LP+ KP N VL++ ++ ++++
Sbjct: 206 EEVEEIKAEKEAKTQAILLEMVGD----LPDADIKPPEN---VLFVCKLNPVTTDEDLEI 258
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
FS+FG IR + R+ KTG+S + FIEF + E M L+ + ++H+
Sbjct: 259 IFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDR--RIHVDFS 316
Query: 133 EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
+ V W+G Y D+ + E K Q+K
Sbjct: 317 QSVAKVKWKGKGGKYTKSDFKEYE-KEQDK 345
>RGD|1311051 [details] [associations]
symbol:Ppil4 "peptidylprolyl isomerase (cyclophilin)-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 RGD:1311051 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
OMA:DRTQNRS OrthoDB:EOG4QVCC7 IPI:IPI00365361
Ensembl:ENSRNOT00000021437 UCSC:RGD:1311051 Uniprot:D4AEG3
Length = 492
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEE--KPLVNKAAVLYIGRIPRWFYEKEMHA 72
E ++ + K A L + G LP+ KP N VL++ ++ ++++
Sbjct: 206 EEVEEIKAEKEAKTQAILLEMVGD----LPDADIKPPEN---VLFVCKLNPVTTDEDLEI 258
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
FS+FG IR + R+ KTG+S + FIEF + E M L+ + ++H+
Sbjct: 259 IFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDR--RIHVDFS 316
Query: 133 EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
+ V W+G Y D+ + E K Q+K
Sbjct: 317 QSVAKVKWKGKGGKYTKSDFKEYE-KEQDK 345
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
EE+ ++ K + +Y+ + E+E+ FSQ GTI ++ ++K GKSK FGF+ FS
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFST 353
Query: 105 PDVAEVVADAMHGYL 119
P+ A HG +
Sbjct: 354 PEEAIDAVKTFHGQM 368
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 34/129 (26%), Positives = 54/129 (41%)
Query: 21 PVSSDRKDTADFLPLEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQFG 78
P+ S +D D +K P+ P N L++ I E E+ FS+FG
Sbjct: 66 PLQSMNEDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFG 125
Query: 79 TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVH-- 136
T+ +RI R T S+ FGF+ FS + A D ++ + +L V H
Sbjct: 126 TVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSP 185
Query: 137 -PKLWRGFN 144
P + G++
Sbjct: 186 TPGKYMGYD 194
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + EK + A F ++G I + + ++++T KS+ F F+ F P A+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 116 HG 117
+G
Sbjct: 70 NG 71
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDV 107
P N +Y+G +P K++ F ++G IR + + +N++ G F F+EF DP
Sbjct: 10 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPP--FAFVEFEDPRD 66
Query: 108 AEVVADAMH 116
AE DA+H
Sbjct: 67 AE---DAVH 72
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + EK + A F ++G I + + ++++T KS+ F F+ F P A+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 116 HG 117
+G
Sbjct: 72 NG 73
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K LYI + E+ + FS FG + R +A++ + G+S+ F FIEF D A
Sbjct: 15 KFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIEFESADSAGRA 73
Query: 112 ADAMHGYLLFEHILQVHLIP 131
M G L+ + IL V P
Sbjct: 74 MLHMDGRLIGQKILCVQRTP 93
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 93 (37.8 bits), Expect = 0.00016, P = 0.00016
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDV 107
P VN+ VLY+ +P +EM+ F ++G IR++RI +K T K F+ + D
Sbjct: 15 PEVNR--VLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYD 69
Query: 108 AEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFN 144
A+ D + G+ ++ +LI + H K+ + F+
Sbjct: 70 AKNAVDHLSGF----NVANRYLIVLYYQHAKMSKKFD 102
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE-VVADA 114
+++G + + E + +FSQFG + +++ +++TG+ + FGF+EF DP AE +A
Sbjct: 138 IFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPR 197
Query: 115 MHGYL 119
H L
Sbjct: 198 KHWIL 202
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 111 (44.1 bits), Expect = 0.00017, P = 0.00017
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 47 KP-LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP 105
KP ++ K +++G + ++ + +FSQFG I + ++ +K TGK + FGF+ F D
Sbjct: 89 KPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDN 148
Query: 106 DVAEVVADAMHGYLLFEHILQV 127
D A+ A M + + H ++V
Sbjct: 149 DSADK-AVVMKFHSICGHKVEV 169
>UNIPROTKB|F1P661 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 EMBL:AAEX03000263
Ensembl:ENSCAFT00000000593 OMA:ERDGHYG NextBio:20858300
Uniprot:F1P661
Length = 526
Score = 114 (45.2 bits), Expect = 0.00017, P = 0.00017
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEE--KPLVNKAAVLYIGRIPRWFYEKEMHA 72
E ++ + K A L + G LP+ KP N VL++ ++ ++++
Sbjct: 240 EEVEEIKAEKEAKTQAILLEMVGD----LPDADIKPPEN---VLFVCKLNPVTTDEDLEI 292
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
FS+FG IR + R+ KTG+S + FIEF + E M L+ + ++H+
Sbjct: 293 IFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDR--RIHVDFS 350
Query: 133 EHVHPKLWRGFNHGYKPLDWVQVECKRQNK 162
+ V W+G Y D+ + E K Q+K
Sbjct: 351 QSVAKVKWKGKGGKYTKSDFKEYE-KEQDK 379
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + EM F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 418
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 419 NGFQIGMKRLKVQLKRPK 436
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 34/119 (28%), Positives = 57/119 (47%)
Query: 31 DFLPLEGGPRR--KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR-RLRIAR 87
+ + L G P R K ++K ++ A L+IG + EK ++ FS FG I +I R
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMR 146
Query: 88 NKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHG 146
+ TG S+ FGFI + + ++ ++M G L + V + + K +G HG
Sbjct: 147 DPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITV-----SYAYKKDTKGERHG 200
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + ++ + F FG + ++ +K+T SK FGF+ + +P A AM
Sbjct: 810 LFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAM 869
Query: 116 HGYLLFEHILQVHL 129
HG+ + L+V L
Sbjct: 870 HGFQIGSKRLKVQL 883
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
Identities = 35/141 (24%), Positives = 64/141 (45%)
Query: 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
L + +Y+ +P +++ FS++G + ++ I ++K T KSK FI F D D A
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
Query: 109 EVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAAS 168
+ A++ LF +++ + + R N+ K + EC E+
Sbjct: 65 QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCY---ECG------ESGH 115
Query: 169 IEYECPE-IVGYVMPAPKKIK 188
+ Y CP+ ++G P KK K
Sbjct: 116 LSYACPKNMLGEREPPKKKEK 136
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 108 (43.1 bits), Expect = 0.00018, P = 0.00018
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +YIG + E ++ FS+FG + + R+K+TGKSK F F+++ D +
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
Query: 113 DAMHGYLLFEHILQV 127
D M L + +++V
Sbjct: 90 DNMTNVKLLDRLVRV 104
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 26/95 (27%), Positives = 50/95 (52%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+++ E P + ++I +P+ F + E+ F FG + ++ ++ T +SK FG
Sbjct: 365 PQQQQQREGP---EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFG 421
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
F+ F +P A+ AM+G+ + L+V L P+
Sbjct: 422 FVSFDNPGSAQAAIQAMNGFQIGMKRLKVQLKRPK 456
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 99 (39.9 bits), Expect = 0.00019, P = 0.00019
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
+ + ++ ++IG + + +FS+FG IR + R+ T +S+ FGF+ F+DP
Sbjct: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
Query: 109 EVVADAMHGYLLFEHILQVHLIPPEHVHPKL 139
+ V H + L + + P PK+
Sbjct: 72 DKVLGQPH-HELDSKTIDPKVAFPRRAQPKM 101
>POMBASE|SPBC18H10.03 [details] [associations]
symbol:tif35 "translation initiation factor eIF3g"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006413 "translational initiation"
evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
NextBio:20801936 Uniprot:P78795
Length = 282
Score = 110 (43.8 bits), Expect = 0.00019, P = 0.00019
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 67 EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY 118
E+E+ F +FG I+R+ +A++K+TG++K F F+ + D D A D + GY
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGY 266
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 113 (44.8 bits), Expect = 0.00020, P = 0.00020
Identities = 29/99 (29%), Positives = 49/99 (49%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+R + +E K +++G I E+E FFSQFG I ++ +K TG+S+ FG
Sbjct: 233 PKRAISKEDQ--EKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFG 290
Query: 99 FIEFSDPDVAEVVADAMHGYLLFE-HILQVHLIPPEHVH 136
F+ + P + V ++ YL + ++V P H
Sbjct: 291 FVTYDSPAAVDKVC--VNKYLTLKGKAMEVKRAAPRGQH 327
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 111 (44.1 bits), Expect = 0.00020, P = 0.00020
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 17 SSQLPVSSDRKDTADFLPLEGGPRRKL---------P--EEKPLVNKAAVLYIGRIPRWF 65
+S P+ + D D P + G RR L P + K + + L++GR+
Sbjct: 16 TSYHPIQAGSIDGTDVAPHDNGVRRALLCYNAGLYDPSGDSKAVGDPYCTLFVGRLSHHT 75
Query: 66 YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF-SDPDVAEVVADAMHGYL 119
E + S++G I+ LR+ R+ TG S+ +GF+E+ ++ ++ DA H +
Sbjct: 76 TEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLI 130
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 108 (43.1 bits), Expect = 0.00021, P = 0.00021
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K L++G + E ++ FSQFG + + I +K++GK + FGF+ F D A+
Sbjct: 15 KVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKA 74
Query: 112 ADAMHGYLLFEHILQVH-LIPPEHVH 136
A + + + H ++V +P E +H
Sbjct: 75 A-VVKFHPIQGHRVEVKKAVPKEDIH 99
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 107 (42.7 bits), Expect = 0.00021, P = 0.00021
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 21 PVSSDRKDTADFLPLEGGP-RRKLPEEKPLVNKAA------VLYIGRIPRWFYEKEMHAF 73
P+ + D D P + G R L KP N+ L++ R+ E+++
Sbjct: 12 PLKAGSIDGTDVEPHDAGVWRAMLARYKP--NRGVCGDPDLTLFVARLNPQTTEEKLRDV 69
Query: 74 FSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
FS+FG IRRLR+ R+ TG SK + FIE+ +
Sbjct: 70 FSKFGDIRRLRLVRDVVTGFSKRYAFIEYKE 100
>UNIPROTKB|I3LPX5 [details] [associations]
symbol:LOC100625706 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0045836 "positive regulation of
meiosis" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YVIPPAY
EMBL:FP312724 Ensembl:ENSSSCT00000022390 Uniprot:I3LPX5
Length = 298
Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TIFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+D DV ++V + HG L ++ + HV P+
Sbjct: 88 YNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPR 127
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q P ++R DT +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++ ++ G SK +GF+ F + AE D M+G LL
Sbjct: 117 DTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLL 163
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q P ++R DT +F ++G P R + ++ P + K+ V ++I + + K ++
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120
FS FG I ++ ++ G SK +GF+ F + AE D M+G LL
Sbjct: 117 DTFSAFGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLL 163
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 117 (46.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 50 VNKAAVLYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
+N+A+ +YIG I W E ++ + FSQFG + + +N TGK K FGF++F A
Sbjct: 765 INEASRIYIGSI-NWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSA 823
Query: 109 EVVADAMHGYLLFEHILQV 127
+ M+G+ L ++V
Sbjct: 824 DDAIATMNGFELLGRSIKV 842
Score = 35 (17.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 15 EVSSQLPVSSDRKDT 29
E+S+ P+SS K T
Sbjct: 102 ELSNSTPISSPTKTT 116
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 110 (43.8 bits), Expect = 0.00022, P = 0.00022
Identities = 36/121 (29%), Positives = 56/121 (46%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYECP 174
M+ LF ++V+L P + R + DW++ K K +E E E P
Sbjct: 67 MNESELFGRTIRVNLAKPMRIKEGSSRPV---WSDDDWLK---KFSGKTLEENK-EEEGP 119
Query: 175 E 175
E
Sbjct: 120 E 120
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 111 (44.1 bits), Expect = 0.00023, P = 0.00023
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P +P+++ + L I +P+ F + E+ F FG + ++ ++ T +SK FG
Sbjct: 255 PPPMIPQQQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 314
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
F+ F +P A+ AM+G+ + L+V L P+
Sbjct: 315 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 349
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 114 (45.2 bits), Expect = 0.00023, P = 0.00023
Identities = 27/113 (23%), Positives = 54/113 (47%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VL++ ++ + ++ FS FG ++ + R++KTG S + F+EF D E
Sbjct: 241 VLFVCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFK 300
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRGFNHG----YKPLDWVQVECKRQNKR 163
M L+ + ++H+ + V WRG G Y+ LD+ + + +++
Sbjct: 301 MDNVLIDDR--RIHVDFSQSVSKVTWRGKGRGIEGDYRKLDFNNLRDDKDHRK 351
>GENEDB_PFALCIPARUM|PF14_0656 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor,
putative" species:5833 "Plasmodium falciparum" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 29/112 (25%), Positives = 52/112 (46%)
Query: 21 PVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAV-----LYIGRIPRWFYEKEMHAFFS 75
P D T F + KL KP+ K + LYI +P ++++
Sbjct: 551 PPEGDPAFTTVFTDINMDVFEKLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLE 610
Query: 76 QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127
QFG ++ I ++ TG +K +GF E+ D ++ A++G++ ++IL V
Sbjct: 611 QFGDLKAFNIIKDLNTGLNKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNV 662
>UNIPROTKB|Q8IKE9 [details] [associations]
symbol:PF14_0656 "U2 snRNP auxiliary factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 GO:GO:0000398 HSSP:P26368 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_001348830.1 ProteinModelPortal:Q8IKE9
IntAct:Q8IKE9 MINT:MINT-1638107 EnsemblProtists:PF14_0656:mRNA
GeneID:812238 KEGG:pfa:PF14_0656 EuPathDB:PlasmoDB:PF3D7_1468800
HOGENOM:HOG000212579 OMA:EYDERYQ ProtClustDB:CLSZ2515245
Uniprot:Q8IKE9
Length = 833
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 29/112 (25%), Positives = 52/112 (46%)
Query: 21 PVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAV-----LYIGRIPRWFYEKEMHAFFS 75
P D T F + KL KP+ K + LYI +P ++++
Sbjct: 551 PPEGDPAFTTVFTDINMDVFEKLRPSKPVNVKTSSDEENRLYIQNLPHDLKDEQIKDLLE 610
Query: 76 QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127
QFG ++ I ++ TG +K +GF E+ D ++ A++G++ ++IL V
Sbjct: 611 QFGDLKAFNIIKDLNTGLNKGYGFFEYEDSSCTQLAIHALNGFVCGQNILNV 662
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 112 (44.5 bits), Expect = 0.00024, P = 0.00024
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A L+I IPR F ++E+ A F FG + ++ +K TG SK FGFI + A+ +
Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 114 AMHGYLLFEHILQVHL 129
M+G L L+V L
Sbjct: 399 TMNGCQLSGKKLKVQL 414
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 113 (44.8 bits), Expect = 0.00024, P = 0.00024
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
LY+G I E ++ + F FG + +++ +++ TG+S+ +GF++F DP+ A + M
Sbjct: 275 LYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEKM 333
Query: 116 HGYLLFEHILQVHL 129
+GY L ++V L
Sbjct: 334 NGYDLGGRAIRVGL 347
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 114 (45.2 bits), Expect = 0.00025, P = 0.00025
Identities = 33/121 (27%), Positives = 59/121 (48%)
Query: 16 VSSQLPVSSDRK-DTADFLPLEGGPRRKLPEEK-PLVNKAAV--LYIGRIPRWFYEKEMH 71
V+ Q P ++R DT +F + G P R + ++ P +A ++I + R K ++
Sbjct: 103 VNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVY 162
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131
FS FG I ++A + + G SK +GF+ F A+ + ++G LL + + V
Sbjct: 163 DTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQ 221
Query: 132 P 132
P
Sbjct: 222 P 222
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 113 (44.8 bits), Expect = 0.00025, P = 0.00025
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 56 LYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
++IG + W ++ + +FSQFG ++ + R+ TG+S+ FGF+ F DP V
Sbjct: 112 MFIGGL-NWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV--- 167
Query: 115 MHGYLLFEHILQVHLIPPEHVHPK 138
++ EH L +I P+ P+
Sbjct: 168 ----MVKEHYLDGKIIDPKRAIPR 187
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
Identities = 21/62 (33%), Positives = 38/62 (61%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + E+ + FS FG I + + ++++T +S+ FGFI F++P+ A V AM
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 110 (43.8 bits), Expect = 0.00026, P = 0.00026
Identities = 36/121 (29%), Positives = 56/121 (46%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N+ LY+G EK + A F FG + + I + ++GK + FGF+EF + A +
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 111 VADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVE-CKRQNKRIEAASI 169
D M+ LF ++V+ P PK KP+ W E K+ + EAA+
Sbjct: 68 AIDNMNESELFGKTIRVNFARP----PK---ATERSQKPV-WADDEWLKKYGRGGEAAAE 119
Query: 170 E 170
E
Sbjct: 120 E 120
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 110 (43.8 bits), Expect = 0.00026, P = 0.00026
Identities = 36/121 (29%), Positives = 56/121 (46%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N+ LY+G EK + A F FG + + I + ++GK + FGF+EF + A +
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 111 VADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVE-CKRQNKRIEAASI 169
D M+ LF ++V+ P PK KP+ W E K+ + EAA+
Sbjct: 68 AIDNMNESELFGKTIRVNFARP----PK---ATERSQKPV-WADDEWLKKYGRGGEAAAE 119
Query: 170 E 170
E
Sbjct: 120 E 120
>UNIPROTKB|D4A0P8 [details] [associations]
symbol:Dazl "Protein Dazl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063480 CTD:1618 EMBL:CH473987
IPI:IPI00870381 RefSeq:NP_001102884.1 UniGene:Rn.136288
Ensembl:ENSRNOT00000066517 GeneID:680486 KEGG:rno:680486
NextBio:718813 Uniprot:D4A0P8
Length = 281
Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+D DV ++V + HG L ++ + HV P+
Sbjct: 88 YNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPR 127
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 105 (42.0 bits), Expect = 0.00027, P = 0.00027
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
EEK + A +YIG + E+ FS G + R+ I NK TG+ K F ++EF+D
Sbjct: 55 EEKRDTD-ARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFAD 113
Query: 105 PDVAEVVADAMHGYLLFEHILQV 127
D + G E L+V
Sbjct: 114 TDAVNKAVATLDGSTFRERQLKV 136
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 105 (42.0 bits), Expect = 0.00027, P = 0.00027
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
EEK + A +YIG + E+ FS G + R+ I NK TG+ K F ++EF+D
Sbjct: 55 EEKRDTD-ARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFAD 113
Query: 105 PDVAEVVADAMHGYLLFEHILQV 127
D + G E L+V
Sbjct: 114 TDAVNKAVATLDGSTFRERQLKV 136
>UNIPROTKB|F6S8J2 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI01018895 ProteinModelPortal:F6S8J2 SMR:F6S8J2
Ensembl:ENST00000382290 UCSC:uc022cok.1 ArrayExpress:F6S8J2
Bgee:F6S8J2 Uniprot:F6S8J2
Length = 334
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|E7EUF4 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00749494 ProteinModelPortal:E7EUF4 SMR:E7EUF4
Ensembl:ENST00000306737 ArrayExpress:E7EUF4 Bgee:E7EUF4
Uniprot:E7EUF4
Length = 337
Score = 110 (43.8 bits), Expect = 0.00027, P = 0.00027
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 111 (44.1 bits), Expect = 0.00028, P = 0.00028
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 56 LYIGRIPRWFYEKEM-HAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE-VVAD 113
L+IG I W ++ + +FS FG + ++ + R K TG+ + FGF+ FSDP V + V+ D
Sbjct: 8 LFIGGIS-WDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 114 AMH 116
H
Sbjct: 67 KHH 69
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N+ L+IG + W E + F G + ++ RNK+TG+S+ +GF+EF AE
Sbjct: 81 NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAET 140
Query: 111 VADAMHGYLL 120
+ +G L+
Sbjct: 141 ILQTYNGTLM 150
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 105 (42.0 bits), Expect = 0.00029, P = 0.00029
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 31 DFLPLEGGPRR--KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRL-RIAR 87
+ + L G P R K ++ A ++IG + EK ++ FS FG I + +I R
Sbjct: 32 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 91
Query: 88 NKKTGKSKHFGFIEFSDPDVAEVVADAMHG-YL 119
+ TG SK + FI F+ D ++ +AM+G YL
Sbjct: 92 DPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 124
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 21/68 (30%), Positives = 41/68 (60%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + ++ + FS++ ++++ ++ R+K+T KSK +GF+ FSDPD A M
Sbjct: 272 LFVGNLAGETTDESLLKAFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDFFQAAKEM 331
Query: 116 HGYLLFEH 123
+G + H
Sbjct: 332 NGKYIQSH 339
>UNIPROTKB|A3DUJ0 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like transcript variant
1" species:9913 "Bos taurus" [GO:0045948 "positive regulation of
translational initiation" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:DAAA02003725 EMBL:DQ408764 EMBL:DQ408765
EMBL:EF501823 IPI:IPI00706010 RefSeq:NP_001075194.1
UniGene:Bt.63695 STRING:A3DUJ0 Ensembl:ENSBTAT00000048665
GeneID:530116 KEGG:bta:530116 InParanoid:A3DUJ0 NextBio:20875183
Uniprot:A3DUJ0
Length = 295
Score = 109 (43.4 bits), Expect = 0.00029, P = 0.00029
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+D DV ++V + HG L ++ + HV P+
Sbjct: 88 YNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPR 127
>UNIPROTKB|J9NTC5 [details] [associations]
symbol:DAZL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 CTD:1618 OMA:YVIPPAY EMBL:AAEX03013583
RefSeq:XP_534251.3 Ensembl:ENSCAFT00000046462 GeneID:477055
KEGG:cfa:477055 Uniprot:J9NTC5
Length = 295
Score = 109 (43.4 bits), Expect = 0.00029, P = 0.00029
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+D DV ++V + HG L ++ + HV P+
Sbjct: 88 YNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCAYHVQPR 127
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 108 (43.1 bits), Expect = 0.00030, P = 0.00030
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 177 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 236
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 237 NGFQIGMKRLKVQLKRPK 254
>MGI|MGI:1342328 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=ISO;IDA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0044464 "cell part" evidence=IDA] [GO:0045836 "positive
regulation of meiosis" evidence=IMP] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO;IDA]
[GO:0048477 "oogenesis" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1342328 GO:GO:0007275 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283 GO:GO:0008494
GO:GO:0003730 GO:GO:0007281 GO:GO:0005844 GO:GO:0045836
eggNOG:NOG260394 GO:GO:0045948 GeneTree:ENSGT00530000063480
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 HOGENOM:HOG000246400
OMA:YVIPPAY EMBL:X95724 EMBL:U38690 EMBL:U46694 EMBL:AK014854
EMBL:AK033183 IPI:IPI00262067 RefSeq:NP_034151.3 UniGene:Mm.280641
PDB:2XS2 PDB:2XS5 PDB:2XS7 PDB:2XSF PDBsum:2XS2 PDBsum:2XS5
PDBsum:2XS7 PDBsum:2XSF ProteinModelPortal:Q64368 SMR:Q64368
IntAct:Q64368 MINT:MINT-133503 STRING:Q64368 PhosphoSite:Q64368
PaxDb:Q64368 PRIDE:Q64368 Ensembl:ENSMUST00000010736 GeneID:13164
KEGG:mmu:13164 UCSC:uc008cyv.2 InParanoid:Q64368
EvolutionaryTrace:Q64368 NextBio:283242 Bgee:Q64368 CleanEx:MM_DAZL
Genevestigator:Q64368 GermOnline:ENSMUSG00000010592 Uniprot:Q64368
Length = 298
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+D DV ++V + HG L ++ + HV P+
Sbjct: 88 YNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPR 127
>RGD|1591714 [details] [associations]
symbol:Dazl "deleted in azoospermia-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IEA;ISO] [GO:0044464 "cell part" evidence=ISO] [GO:0045836
"positive regulation of meiosis" evidence=IEA;ISO] [GO:0045948
"positive regulation of translational initiation" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1591714 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008494 GO:GO:0003730 GO:GO:0007281
GO:GO:0005844 GO:GO:0045836 GO:GO:0045948 OrthoDB:EOG4T783S
EMBL:CH473987 UniGene:Rn.136288 IPI:IPI00765442
Ensembl:ENSRNOT00000039512 UCSC:RGD:1591714 Uniprot:D4A3C6
Length = 298
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ +FF+++G+++ ++I ++ TG SK +GF+ F
Sbjct: 32 LPEGKIMPN---TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAM--HGYLL-FEHILQVHLIPPEHVHPK 138
+D DV ++V + HG L ++ + HV P+
Sbjct: 88 YNDVDVQKIVESQINFHGKKLKLGPAIRKQNLCTYHVQPR 127
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 339 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAM 398
Query: 116 HGYLLFEHILQVHLIPPE 133
+G+ + L+V L P+
Sbjct: 399 NGFQIGMKRLKVQLKRPK 416
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
Identities = 38/127 (29%), Positives = 61/127 (48%)
Query: 56 LYIGRIPRWFYEKE-MHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD-VAEVVAD 113
L++G + W +E + ++FSQ+G + I ++K T +S+ FGF++F DP+ V V+A
Sbjct: 12 LFVGGLD-WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFN-HGYKPLD-WVQVECKRQNKR---IEAAS 168
H L I P+ P RG +P + W Q E + +N R I
Sbjct: 71 R-------PHTLDGRNIDPKPCTP---RGMQPERSRPREGWQQKEPRTENSRSNKIFVGG 120
Query: 169 IEYECPE 175
I + C E
Sbjct: 121 IPHNCGE 127
>UNIPROTKB|E7EN82 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00874259
ProteinModelPortal:E7EN82 SMR:E7EN82 Ensembl:ENST00000382434
ArrayExpress:E7EN82 Bgee:E7EN82 Uniprot:E7EN82
Length = 361
Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|E7EU98 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00872285 ProteinModelPortal:E7EU98 SMR:E7EU98
Ensembl:ENST00000400212 ArrayExpress:E7EU98 Bgee:E7EU98
Uniprot:E7EU98
Length = 361
Score = 110 (43.8 bits), Expect = 0.00031, P = 0.00031
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|F1RUN0 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 EMBL:CU896684
Ensembl:ENSSSCT00000012171 OMA:PANNENR Uniprot:F1RUN0
Length = 236
Score = 107 (42.7 bits), Expect = 0.00031, P = 0.00031
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
+ A L+I +P+ F ++++ F FG + ++ +K+T SK FGF+ + +P A+
Sbjct: 149 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 208
Query: 112 ADAMHGYLLFEHILQVHL 129
AM+G+ + L+V L
Sbjct: 209 IQAMNGFQIGMKRLKVQL 226
>UNIPROTKB|E7ETR3 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00872074 ProteinModelPortal:E7ETR3 SMR:E7ETR3
Ensembl:ENST00000315357 ArrayExpress:E7ETR3 Bgee:E7ETR3
Uniprot:E7ETR3
Length = 366
Score = 110 (43.8 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|E7EU30 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI00930462 ProteinModelPortal:E7EU30 SMR:E7EU30 PRIDE:E7EU30
Ensembl:ENST00000382314 ArrayExpress:E7EU30 Bgee:E7EU30
Uniprot:E7EU30
Length = 366
Score = 110 (43.8 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|E7EU39 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
RefSeq:NP_001005786.2 UniGene:Hs.592257 GeneID:57055 KEGG:hsa:57055
CTD:57055 HGNC:HGNC:15964 GenomeRNAi:57055 NextBio:62832
HGNC:HGNC:15966 EMBL:AC006983 EMBL:AC007039 EMBL:AC053490
EMBL:AC006982 EMBL:AC010089 IPI:IPI00974525 SMR:E7EU39
Ensembl:ENST00000382294 Ensembl:ENST00000415508 UCSC:uc004fvo.3
Uniprot:E7EU39
Length = 366
Score = 110 (43.8 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 93 (37.8 bits), Expect = 0.00033, P = 0.00033
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + EK + A F ++G I + + ++++T KS+ F F+ F P A+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 116 HG 117
+G
Sbjct: 70 NG 71
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>TAIR|locus:2162107 [details] [associations]
symbol:AT5G55670 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB009050 HSSP:Q9V535 KO:K14398 OMA:GKGSAPN IPI:IPI00548235
RefSeq:NP_200378.1 UniGene:At.6556 ProteinModelPortal:Q9FM71
SMR:Q9FM71 PRIDE:Q9FM71 EnsemblPlants:AT5G55670.1 GeneID:835661
KEGG:ath:AT5G55670 TAIR:At5g55670 HOGENOM:HOG000242877
InParanoid:Q9FM71 PhylomeDB:Q9FM71 ProtClustDB:CLSN2686996
ArrayExpress:Q9FM71 Genevestigator:Q9FM71 Uniprot:Q9FM71
Length = 710
Score = 113 (44.8 bits), Expect = 0.00034, P = 0.00034
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A L++G + W + E+ A ++G ++ ++ K +GKSK + +EF DP A D
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 114 AMHGY 118
A++GY
Sbjct: 294 ALNGY 298
>UNIPROTKB|E7ENA5 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI00936003 SMR:E7ENA5 Ensembl:ENST00000382432
Ensembl:ENST00000400494 UCSC:uc022coz.1 Uniprot:E7ENA5
Length = 382
Score = 110 (43.8 bits), Expect = 0.00034, P = 0.00034
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 109 (43.4 bits), Expect = 0.00034, P = 0.00034
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 109 (43.4 bits), Expect = 0.00034, P = 0.00034
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 109 (43.4 bits), Expect = 0.00034, P = 0.00034
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>ASPGD|ASPL0000033941 [details] [associations]
symbol:cyp8 species:162425 "Emericella nidulans"
[GO:0044732 "mitotic spindle pole body" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:1901407 "regulation of phosphorylation
of RNA polymerase II C-terminal domain" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003723 eggNOG:COG0724
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413 EMBL:AACD01000169
RefSeq:XP_682364.1 ProteinModelPortal:Q5ARI5 STRING:Q5ARI5
EnsemblFungi:CADANIAT00009519 GeneID:2868035 KEGG:ani:AN9095.2
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
Uniprot:Q5ARI5
Length = 461
Score = 111 (44.1 bits), Expect = 0.00034, P = 0.00034
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 25 DRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLR 84
+R+ A L LE E KP N VL++ ++ ++++ FS+FG I
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKPPEN---VLFVCKLNPVTQDEDLELIFSRFGKILSCE 278
Query: 85 IARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWR 141
+ R+K+TG S + FIEF E M G L+ +H + V + WR
Sbjct: 279 VIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIHVDFSQSVSKLSESWR 335
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 109 (43.4 bits), Expect = 0.00035, P = 0.00035
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 204 PVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 263
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 264 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 319
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE ++ V ++ ++ + EK++ FSQ GT+ +R+ +K T + K G++EF
Sbjct: 256 LPEPDEESDQRTV-FVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEF 314
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
S ++ + A A+ G +L + VH I PE
Sbjct: 315 SQKEMVDK-AIALSGSVLDGQQILVHSIQPE 344
>UNIPROTKB|E7ERQ6 [details] [associations]
symbol:DAZ3 "Deleted in azoospermia protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15965
EMBL:AC010089 IPI:IPI00942002 ProteinModelPortal:E7ERQ6 SMR:E7ERQ6
Ensembl:ENST00000446723 ArrayExpress:E7ERQ6 Bgee:E7ERQ6
Uniprot:E7ERQ6
Length = 390
Score = 110 (43.8 bits), Expect = 0.00035, P = 0.00035
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|E7EU33 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006338
HGNC:HGNC:15966 ChiTaRS:DAZ4 EMBL:AC006982 EMBL:AC010089
IPI:IPI00639994 SMR:E7EU33 Ensembl:ENST00000382296
Ensembl:ENST00000382305 Uniprot:E7EU33
Length = 390
Score = 110 (43.8 bits), Expect = 0.00035, P = 0.00035
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 110 (43.8 bits), Expect = 0.00036, P = 0.00036
Identities = 37/114 (32%), Positives = 52/114 (45%)
Query: 37 GGPRR--KLPEEKPLVNKAAVLYIGRI-PRWFYEKEMHAFFSQFGTIRRL-RIARNKKTG 92
G P R K ++ A ++IG + P+ K ++ FS FG I + RI RN TG
Sbjct: 82 GKPTRVNKASAHSKKLDVGANIFIGNLDPQ--IGKLLYDTFSTFGVILQTPRIMRNPDTG 139
Query: 93 KSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHG 146
SK + FI F DV + AM+ L H++ V H K +G HG
Sbjct: 140 NSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITV-----SHAFKKDSKGERHG 188
>UNIPROTKB|O57437 [details] [associations]
symbol:dazl-a "Deleted in azoospermia-like-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0008354 "germ cell migration" evidence=IMP] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0032019
"mitochondrial cloud" evidence=IDA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0007283
GO:GO:0003723 GO:GO:0008494 GO:GO:0007281 GO:GO:0045948
GO:GO:0045495 GO:GO:0008354 EMBL:AF017778 RefSeq:NP_001081772.1
UniGene:Xl.311 HSSP:Q15427 ProteinModelPortal:O57437 GeneID:398041
KEGG:xla:398041 CTD:1618 Xenbase:XB-GENE-6078612 HOVERGEN:HBG000573
GO:GO:0032019 Uniprot:O57437
Length = 286
Score = 108 (43.1 bits), Expect = 0.00036, P = 0.00036
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE + + N +++G I E E+ FF++FG ++ ++I ++ TG SK +GFI F
Sbjct: 25 LPEGEIMPN---TVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDR-TGVSKGYGFISF 80
Query: 103 SDP-DVAEVVAD--AMHG 117
SD DV ++V + HG
Sbjct: 81 SDEVDVQKIVKSQISFHG 98
>ASPGD|ASPL0000001581 [details] [associations]
symbol:AN10765 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IEA] [GO:0071541 "eukaryotic translation initiation factor
3 complex, eIF3m" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071540 "eukaryotic translation initiation factor 3 complex,
eIF3e" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001301
GO:GO:0003743 HSSP:O75821 OMA:SNLSEAM HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACD01000103
ProteinModelPortal:C8V330 STRING:Q5B0B3
EnsemblFungi:CADANIAT00007002 Uniprot:C8V330
Length = 289
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 37 GGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKH 96
GG R EK + A L + + E+E+ F +FG + R+ +AR+++T ++K
Sbjct: 195 GGERMAGKYEK---DDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKG 251
Query: 97 FGFIEFSDPDVAEVVADAMHGYLLFEHIL 125
F FI F+D A D M G+ + H++
Sbjct: 252 FAFISFADRSDAARACDKMDGFG-YRHLI 279
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 90 (36.7 bits), Expect = 0.00037, P = 0.00037
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
L + +Y+ +P +++ FS++G + ++ I ++K T KSK FI F D D A
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
Query: 109 E 109
+
Sbjct: 65 Q 65
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 90 (36.7 bits), Expect = 0.00037, P = 0.00037
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 59 GRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
G IP E+++ FS+ G + R+ +++TGK K +GF E+ D + A
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 51
>RGD|1585290 [details] [associations]
symbol:Slirp "SRA stem-loop interacting RNA binding protein"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000961 "negative regulation of mitochondrial RNA
catabolic process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1585290 GO:GO:0005739 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473982 CTD:81892
GeneTree:ENSGT00390000008624 OrthoDB:EOG4Z62Q4 IPI:IPI00365864
RefSeq:NP_001102977.1 UniGene:Rn.65910 Ensembl:ENSRNOT00000016479
GeneID:688717 KEGG:rno:688717 UCSC:RGD:1585290 NextBio:737107
Uniprot:D4A4W6
Length = 111
Score = 90 (36.7 bits), Expect = 0.00037, P = 0.00037
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
+ +I +IP E+ F+QFG +RR + +K+TG + G+++FS + +
Sbjct: 20 IAFIRKIPWTAASSELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQE 79
Query: 115 MHGYLLFEHILQVHLIPPEHVHPKLWRG 142
H + + + ++H+ P + PK+ G
Sbjct: 80 EHH--IIDGV-EIHVQPQK---PKVLHG 101
>UNIPROTKB|J9P7U8 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 OMA:AFIEFEL EMBL:AAEX03009569
EMBL:AAEX03009570 Ensembl:ENSCAFT00000046678 Uniprot:J9P7U8
Length = 343
Score = 109 (43.4 bits), Expect = 0.00039, P = 0.00039
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + +K +HA F FG I ++I + +T K + F F+EF + A D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V+L P +
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 107 (42.7 bits), Expect = 0.00040, P = 0.00040
Identities = 28/100 (28%), Positives = 51/100 (51%)
Query: 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88
T D P +G P+ + E ++ L++ IP F + ++ F QFG I + I N
Sbjct: 91 TDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 150
Query: 89 KKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
++ G SK FGF+ F + A+ + +HG ++ ++V+
Sbjct: 151 ER-G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 188
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 39 PRRKLPEEKPL-VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHF 97
P+ P+ +P NK +++G + + +E+ A+FSQFG + + +++T + + F
Sbjct: 275 PKHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGF 334
Query: 98 GFIEFSDPDVAEVVAD 113
GF+ F + DV + V +
Sbjct: 335 GFVTFENEDVVDRVCE 350
>ZFIN|ZDB-GENE-050417-167 [details] [associations]
symbol:ppie "peptidylprolyl isomerase E
(cyclophilin E)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050417-167 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 CTD:10450 KO:K09564 OrthoDB:EOG4STS55
EMBL:BC093329 IPI:IPI00511584 RefSeq:NP_001017678.1
UniGene:Dr.79339 ProteinModelPortal:Q561T2 SMR:Q561T2 GeneID:550373
KEGG:dre:550373 InParanoid:Q561T2 NextBio:20879625 Uniprot:Q561T2
Length = 302
Score = 108 (43.1 bits), Expect = 0.00041, P = 0.00041
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
VLY+G + EK +HA F FG I ++I + +T K + F FIEF + + D
Sbjct: 7 VLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDN 66
Query: 115 MHGYLLFEHILQVHLIPPEHV 135
M+ LF ++V++ P +
Sbjct: 67 MNESELFGRTIRVNIAKPMRI 87
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 108 (43.1 bits), Expect = 0.00041, P = 0.00041
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 26 RKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRI 85
R D + + GG K E L A L + + E+E+ F +FG + R+ +
Sbjct: 199 RGDRKEGEKMGGGAGGKYGERDDL----ATLRVTNVSEMAEEQELRDMFERFGRVTRVFL 254
Query: 86 ARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125
A+++ TG +K F FI F+D + A + M G+ F+H++
Sbjct: 255 AKDRDTGLAKGFAFISFADREDAVKACNKMDGWG-FKHLI 293
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 108 (43.1 bits), Expect = 0.00041, P = 0.00041
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K L++G + E ++ FSQFGT+ + I +K++GK + FGF+ F + D A+
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
Query: 112 ADAMHGYLLFEHILQVH-LIPPEHVH 136
A + + + H ++V +P E ++
Sbjct: 156 A-VVKFHPIQGHRVEVKKAVPKEDIY 180
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 108 (43.1 bits), Expect = 0.00041, P = 0.00041
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
K L++G + E ++ FSQFG + + I +K++GK + FGF+ F D A+
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKA 155
Query: 112 ADAMHGYLLFEHILQVH-LIPPEHVH 136
A + + + H ++V +P E +H
Sbjct: 156 A-VVKFHPIQGHRVEVKKAVPKEDIH 180
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 23/84 (27%), Positives = 49/84 (58%)
Query: 45 EEKPLVNKAA-VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFS 103
+E+ +++K+ +++G IP E+++ FS+ G + L++ ++++GK K FGF E+
Sbjct: 6 QEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
Query: 104 DPDVAEVVADAMHGYLLFEHILQV 127
D + A ++GY + L+V
Sbjct: 66 DQETALSAMRNLNGYEIGGRTLRV 89
>UNIPROTKB|E7ENA6 [details] [associations]
symbol:DAZ2 "Deleted in azoospermia protein 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:15964
EMBL:AC006983 EMBL:AC007039 EMBL:AC053490 IPI:IPI00942959
ProteinModelPortal:E7ENA6 SMR:E7ENA6 Ensembl:ENST00000400493
ArrayExpress:E7ENA6 Bgee:E7ENA6 Uniprot:E7ENA6
Length = 438
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LPE K + N +++G I E E+ + F ++G+++ ++I N+ TG SK +GF+ F
Sbjct: 32 LPEGKIVPN---TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSF 87
Query: 103 -SDPDVAEVVADAMHGY---LLFEHILQVHLIPPEHVHPK 138
+D DV ++V +H + L ++ + HV P+
Sbjct: 88 VNDVDVQKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQPR 127
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 108 (43.1 bits), Expect = 0.00042, P = 0.00042
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 18 SQLPVSSDRKDTADFLPLEGGPRR-KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
+Q PVS K L +GG RR + + + A + + + E ++ F
Sbjct: 191 AQAPVSKTGKYVPPSLR-DGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 249
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 250 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 305
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 108 (43.1 bits), Expect = 0.00042, P = 0.00042
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 18 SQLPVSSDRKDTADFLPLEGGPRR-KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
+Q PVS K L +GG RR + + + A + + + E ++ F
Sbjct: 191 AQAPVSKTGKYVPPSLR-DGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 249
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 250 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 305
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 108 (43.1 bits), Expect = 0.00043, P = 0.00043
Identities = 36/118 (30%), Positives = 57/118 (48%)
Query: 18 SQLPVSSDRKDTADFLPLEGGPRR-KLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
+Q PVS K L +GG RR + + + A + + + E ++ F
Sbjct: 193 AQAPVSKTGKYVPPSLR-DGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 251
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 252 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 307
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 112 (44.5 bits), Expect = 0.00044, P = 0.00044
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 37 GGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKS 94
GG LP P + + +Y+G +P E+++ + S +G ++ + ++ TG S
Sbjct: 359 GGNASLLPSIVPTNVPDSENKIYVGGLPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVS 418
Query: 95 KHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127
K F F E+ D +V +V ++G L + L V
Sbjct: 419 KGFAFCEYQDSEVTDVACSKLNGIPLADKTLVV 451
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 105 (42.0 bits), Expect = 0.00045, P = 0.00045
Identities = 34/141 (24%), Positives = 64/141 (45%)
Query: 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108
L + +Y+ +P +++ FS++G + ++ I ++K T +SK FI F D D A
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSA 64
Query: 109 EVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAAS 168
+ A++ LF +++ + + R N+ K + EC E+
Sbjct: 65 QNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCY---ECG------ESGH 115
Query: 169 IEYECPE-IVGYVMPAPKKIK 188
+ Y CP+ ++G P KK K
Sbjct: 116 LSYACPKNMLGEREPPKKKEK 136
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 21 PVSSDRKDTADFLP--LEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQ 76
PV + + T ++P L G R+ +P + A + + + E ++ F
Sbjct: 202 PVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRP 261
Query: 77 FGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMHGYLLFEH-ILQVHLIPP 132
FG+I R+ +A++K TG+SK F FI F D A +A + G+ ++H IL V P
Sbjct: 262 FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA-GVSGFG-YDHLILNVEWAKP 317
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 110 (43.8 bits), Expect = 0.00046, P = 0.00046
Identities = 25/95 (26%), Positives = 50/95 (52%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+++ E P + ++I +P+ F + E+ F FG + ++ ++ T +SK FG
Sbjct: 365 PQQQQQREGP---EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFG 421
Query: 99 FIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
F+ F +P A+ +M+G+ + L+V L P+
Sbjct: 422 FVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPK 456
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 105 (42.0 bits), Expect = 0.00046, P = 0.00046
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 36 EGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSK 95
EG PR EEK ++K +V Y+G + +++ A FS G+I R+ I +K +G K
Sbjct: 76 EGPPRPLSAEEKKEIDKRSV-YVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPK 134
Query: 96 HFGFIEFSD 104
+ +IEF++
Sbjct: 135 GYAYIEFAE 143
>UNIPROTKB|I3LGX0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 OMA:ERDGHYG EMBL:CU459105
EMBL:CU915504 EMBL:AEMK01192340 Ensembl:ENSSSCT00000024741
Uniprot:I3LGX0
Length = 471
Score = 110 (43.8 bits), Expect = 0.00047, P = 0.00047
Identities = 41/152 (26%), Positives = 70/152 (46%)
Query: 15 EVSSQLPVSSDRKDTADFLPLEGGPRRKLPEE--KPLVNKAAVLYIGRIPRWFYEKEMHA 72
E ++ + K A L + G LP+ KP N VL++ ++ ++++
Sbjct: 183 EEVEEIKAEKEAKTQAILLEMVGD----LPDADIKPPEN---VLFVCKLNSVTPDEDLEI 235
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
FS+FG IR + R+ KTG+S + FIEF + E M L+ + ++H+
Sbjct: 236 IFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDR--RIHVDFS 293
Query: 133 EHVHPKLWRGFNHG--YKPLDWVQVECKRQNK 162
+ V W+G G Y D+ + E K Q+K
Sbjct: 294 QSVAKVKWKGKEIGGKYTKSDFKEYE-KEQDK 324
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 108 (43.1 bits), Expect = 0.00048, P = 0.00048
Identities = 21/74 (28%), Positives = 44/74 (59%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A +Y G + E ++ FSQ+G L++ R+K+TGKS+ FG++++ D ++ D
Sbjct: 33 AFVYFGGLDDTLSEGDIITIFSQYGEPVFLKLVRDKETGKSRGFGWLKYEDQRSTDLAVD 92
Query: 114 AMHGYLLFEHILQV 127
+ G ++ + +++V
Sbjct: 93 NLGGAVIKDRMMRV 106
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 89 (36.4 bits), Expect = 0.00048, P = 0.00048
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
+++G +P +E+ +F +FG + + +K+TG SK +GF+ F+ E +
Sbjct: 17 IFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKI 72
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 89 (36.4 bits), Expect = 0.00048, P = 0.00048
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + E+ + FS++G I + + ++++T +S+ FGF+ F + D A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 89 (36.4 bits), Expect = 0.00048, P = 0.00048
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + E+ + FS++G I + + ++++T +S+ FGF+ F + D A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 89 (36.4 bits), Expect = 0.00048, P = 0.00048
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + E+ + FS++G I + + ++++T +S+ FGF+ F + D A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 116 HG 117
+G
Sbjct: 68 NG 69
WARNING: HSPs involving 66 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.439 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 180 0.00092 109 3 11 22 0.41 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 316
No. of states in DFA: 603 (64 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.47u 0.10s 16.57t Elapsed: 00:00:01
Total cpu time: 16.48u 0.10s 16.58t Elapsed: 00:00:01
Start: Sat May 11 10:36:14 2013 End: Sat May 11 10:36:15 2013
WARNINGS ISSUED: 2