BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042948
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74978|YQL5_SCHPO Uncharacterized RNA-binding protein C1827.05c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC1827.05c PE=4 SV=1
Length = 276
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 40 RRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGF 99
++K+ E K L K VLY+GR+P FYEK+M +FSQFG + RLR++RN+KTG SKH+ F
Sbjct: 91 KKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAF 150
Query: 100 IEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRG 142
IEF DVA VVA+ MH YLL+ +LQ +IP + VH +++G
Sbjct: 151 IEFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKG 193
>sp|Q6GL69|MK67I_XENTR MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1
Length = 276
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 67/95 (70%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
V+YIG IPR YE ++ +FSQFGT+ RLR++R+KKTG SK + ++EF +VA++VAD
Sbjct: 41 GVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVAD 100
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYK 148
M+ YL E +L+ +PPE VHP+L+ G ++
Sbjct: 101 TMNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFR 135
>sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus
GN=MKI67IP PE=2 SV=1
Length = 296
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 75/111 (67%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
V+Y+G +P YE ++ A+FSQFGT+ R R++R+KKTG SK +GF+EF DVA++ A+
Sbjct: 45 GVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAE 104
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRI 164
M+ YL E +L+ H IPPE VH +L+R ++ +K + V+ QN+ +
Sbjct: 105 TMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKRYNQNRSL 155
>sp|Q8JIY8|MK67I_DANRE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio
rerio GN=mki67ip PE=2 SV=2
Length = 269
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 70/95 (73%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
VLY+G +PR +E ++ ++F QFG + RLR++R+KKTG SK +GF+EF +VA++VA+
Sbjct: 45 GVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAE 104
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYK 148
M+ YL+ E I++ H+IPPE VH KL+ G G+K
Sbjct: 105 TMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFK 139
>sp|Q7SYS2|MK67I_XENLA MKI67 FHA domain-interacting nucleolar phosphoprotein-like
OS=Xenopus laevis GN=mki67ipl PE=2 SV=2
Length = 278
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 66/95 (69%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
V+YIG IP+ E ++ +F+QFGT+ RLR++R+KKTG SK + ++E+ +VA++VAD
Sbjct: 41 GVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVAD 100
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYK 148
M+ YL E +L+ + PE VHP+L+ G N ++
Sbjct: 101 TMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFR 135
>sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo
sapiens GN=MKI67IP PE=1 SV=1
Length = 293
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 73/111 (65%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
V+Y+ +P E ++ ++FSQFGT+ R R++R+K+TG SK + F+EF DVA++VA+
Sbjct: 45 GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRI 164
M+ YL E +L+ H +PPE VH +L++ +N +K + V+ +N+ +
Sbjct: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTL 155
>sp|P53927|NOP15_YEAST Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1
Length = 220
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 72/108 (66%)
Query: 34 PLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGK 93
P + +K ++K L + ++Y+ R+P F+EKE+ +F+QFG ++ +R+ARNKKTG
Sbjct: 71 PKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGN 130
Query: 94 SKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWR 141
S+H+GF+EF + + A + ++M+ YLL H+LQV ++P KL++
Sbjct: 131 SRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK 178
>sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus
norvegicus GN=Mki67ip PE=2 SV=1
Length = 271
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111
+ V+Y+G +P E ++ + +QFG IRR R++R+K+TG S+ F F+EF DVA++V
Sbjct: 42 NSGVVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFVEFESEDVAKIV 101
Query: 112 ADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKR 163
A+ M YL E +L +P E VH L+ N + P + V KR N++
Sbjct: 102 AETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAV--KRYNQK 151
>sp|Q91VE6|MK67I_MOUSE MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus
musculus GN=Mki67ip PE=2 SV=1
Length = 317
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
V+Y+G +P E ++ + +QFG I R R++R+K+TG SK + F+EF DVA++VA+
Sbjct: 47 GVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 106
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFN 144
M YL E +L +P + VH L+ N
Sbjct: 107 TMDNYLFGERLLSCKFMPRKKVHKDLFSQRN 137
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114
++IG + +W E +H+ FSQ G + ++I RNK+TG+S+ +GF+EF+ AE V +
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 115 MHGYLLFEHILQVHLIPPEHVHP-KL-WRGFNHGYK 148
+G ++ P P +L W GF+ G K
Sbjct: 145 YNGTMM-----------PNTEQPFRLNWAGFSTGEK 169
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 73 FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132
F S++ +++ ++ + TG SK +GF+ F D M+G +++ + P
Sbjct: 197 FASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATP 256
Query: 133 E 133
+
Sbjct: 257 K 257
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +Y+G IP E ++ A FSQ+G I + + R+K TGKSK F F+ + D +
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 113 DAMHGYLLFEHILQV 127
D ++G L+ ++V
Sbjct: 95 DNLNGALVLGRTIKV 109
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 9 LKKNLKEVSSQLPVSSDRKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEK 68
L N+ E S + + +R+ A L LE E KP N VL++ ++ ++
Sbjct: 207 LDDNMDEESME-KLRREREARAQALTLEMVGDLPFAEVKPPEN---VLFVCKLNPVTQDE 262
Query: 69 EMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128
++H FS+FGTI + R+K+TG S + FIEF + E M G L+ +H + V
Sbjct: 263 DLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVD 322
Query: 129 LIPPEHVHPKLWRG 142
+ WR
Sbjct: 323 FSQSVSKLSESWRN 336
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
+ +A L + + E+E+ F +FG I+R+ +A++K+TG++K F F+ + D D A
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258
Query: 111 VADAMHGYLLFEHILQVHLIPP 132
D + GY IL+ P
Sbjct: 259 ARDRLDGYGWNNLILRCEFSKP 280
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG I ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 403 LFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAM 462
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 463 NGFQIGMKRLKVQL 476
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR EK++ F QFG I L + +++ TG K F+ + D A A+
Sbjct: 49 LFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTAL 108
Query: 116 H 116
H
Sbjct: 109 H 109
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + E+E+ + F FG+I + R G SK F++FS A+ A+
Sbjct: 137 LFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPD-GSSKGCAFVKFSSHAEAQAAIQAL 195
Query: 116 HG 117
HG
Sbjct: 196 HG 197
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + EM F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 429 NGFQIGMKRLKVQL 442
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG+IPR EK++ F QFG I L + ++K TG K F+ + + A +A+
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + + ++ F FG+I + R G SK F+++ A+ A+
Sbjct: 96 LFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISAL 154
Query: 116 HG 117
HG
Sbjct: 155 HG 156
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG + +W E + + F+Q G ++ RNK TG+S+ +GFIEF VAE V
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 116 HG 117
+G
Sbjct: 122 NG 123
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG 117
F + +G+++ ++ ++ TG+SK +GF+ F+D + M+G
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 364 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 423
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136
+P A+ AM+G+ + L+V L P+ +
Sbjct: 424 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 457
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR E+++ F +FG I L + +++ TG K F+ + D A A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 116 H 116
H
Sbjct: 108 H 108
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + E+++ F FG I + R+ G SK F++F A+ +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQGL 194
Query: 116 HG 117
HG
Sbjct: 195 HG 196
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG I ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 462 NGFQIGMKRLKVQL 475
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR EK++ F QFG I L + ++ TG K F+ + D A A+
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 116 H 116
H
Sbjct: 107 H 107
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + E+++ F FG I + R G SK F++FS A+ A+
Sbjct: 136 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHAL 194
Query: 116 HG 117
HG
Sbjct: 195 HG 196
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + DP V ++ A+
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
+G + + L V + PK
Sbjct: 437 NGIKMGDKTLTVRRAIQGAIQPK 459
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEF 102
LP+++ + L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F
Sbjct: 385 LPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 444
Query: 103 SDPDVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136
+P A+ AM+G+ + L+V L P+ +
Sbjct: 445 DNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDAN 478
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR E+++ F +FG I L + +++ TG K F+ + D A A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 116 H 116
H
Sbjct: 108 H 108
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + E+++ F FG I + R+ G SK F++F A+ +
Sbjct: 136 LFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIRGL 194
Query: 116 HG 117
HG
Sbjct: 195 HG 196
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + D V ++ A+
Sbjct: 343 IFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 402
Query: 116 HGYLLFEHILQV 127
+G + + L V
Sbjct: 403 NGIKMGDKTLTV 414
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + D +V ++ A+
Sbjct: 336 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 395
Query: 116 HGYLLFEHILQV 127
+G + + L V
Sbjct: 396 NGIKMGDKTLTV 407
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +YIG + E ++ FS+FG + + R+K+TGKSK F F+++ D +
Sbjct: 30 SAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
Query: 113 DAMHGYLLFEHILQV 127
D M L + +++V
Sbjct: 90 DNMTNVKLLDRLVRV 104
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + D V ++ A+
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 116 HGYLLFEHILQVHLIPPEHVHPK 138
+G + + L V PK
Sbjct: 421 NGIKMGDKTLTVRRANQGTTQPK 443
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + D +V ++ A+
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 419
Query: 116 HGYLLFEHILQV 127
+G + + L V
Sbjct: 420 NGIKMGDKTLTV 431
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N+ L+IG + W E + F G + ++ RNK+TG+S+ +GF+EF AE
Sbjct: 81 NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAET 140
Query: 111 VADAMHGYLL 120
+ +G L+
Sbjct: 141 ILQTYNGTLM 150
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 72 AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127
F S + ++R ++ ++ TG+SK +GF++F+D M+G L +++
Sbjct: 195 TFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRI 250
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
+A +++G IP E ++ A F+Q+G + + + R+K TGKSK F F+ + D +
Sbjct: 35 SAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 113 DAMHGYLLFEHILQVHLIP 131
D ++G + I++V +
Sbjct: 95 DNLNGAKVLGRIVRVDHVS 113
>sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif35 PE=3 SV=1
Length = 289
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A L + + E+E+ F +FG + R+ +AR+++T ++K F FI F+D A D
Sbjct: 209 ATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACD 268
Query: 114 AMHGYLLFEHILQVHL 129
M G+ IL+V
Sbjct: 269 KMDGFGYRHLILRVEF 284
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
EE+ ++ K + +Y+ + E+E+ FSQ GTI ++ ++K GKSK FGF+ FS
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFST 353
Query: 105 PDVAEVVADAMHGYLL 120
P+ A HG +
Sbjct: 354 PEEAIDAVKTFHGQMF 369
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
N +++ +P + F +FG I ++A + GKS+ +GF++F D A
Sbjct: 109 NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHA 167
Query: 111 VADAMHGYLL 120
++ ++
Sbjct: 168 AIQTLNSTIV 177
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 38/75 (50%)
Query: 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112
A LY+G + E ++ F++F ++ +R+ ++ +G+S +G+ F A +
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 113 DAMHGYLLFEHILQV 127
+ + LL +++V
Sbjct: 83 EKKNNSLLNGKMIRV 97
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+++G +P +F E ++ FG +R + ++++TG SK + F + D +V ++ A+
Sbjct: 329 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 388
Query: 116 HGYLLFEHILQV 127
+G + + L V
Sbjct: 389 NGIKMGDKTLTV 400
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 116 HGYLLFEHILQVHLIPPEHVH 136
+G+ + L+V L P+ +
Sbjct: 439 NGFQIGMKRLKVQLKRPKDAN 459
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG+IPR EK++ F QFG I L + ++K TG K F+ + + A A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + ++++ F FG I + R G SK F++F A+ +A+
Sbjct: 97 LFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINAL 155
Query: 116 HG 117
HG
Sbjct: 156 HG 157
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP 105
++IGR+P E E+ +F +FG I ++RI ++K T KSK + FI F DP
Sbjct: 108 TIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
+ +Y+ +P +++ FS++G + ++ I ++K T KSK FI F D D A+
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 69
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYEC 173
A++ LF +++ + + R N+ K + EC E+ + Y C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCY---ECG------ESGHLSYAC 120
Query: 174 PE 175
P+
Sbjct: 121 PK 122
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+R +P ++ +K +++G I KE FFSQ+GTI ++ +K TG+S+ FG
Sbjct: 230 PKRAIPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFG 287
Query: 99 FIEFSDPDVAEVVADAMHGYLLF-EHILQVHLIPPEHVHPK 138
F+ + D + V + ++ F + +++ P H+ K
Sbjct: 288 FVTYDSADAVDRV--CQNKFIDFKDRKIEIKRAEPRHMQQK 326
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP-DV 107
L ++ ++IG + E + +F ++GT+ L+I ++ TG+S+ FGF+ F P V
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 108 AEVVADAMHGYLLFEHILQVHLIPPEHVHPK 138
EVV +HIL +I P+ P+
Sbjct: 214 DEVVK--------TQHILDGKVIDPKRAIPR 236
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 39 PRRKLPEEKPLVNKAAV-LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHF 97
PR PE P V + A +Y+G +P + FS+ G + R+ +++TG+S+ F
Sbjct: 228 PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287
Query: 98 GFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129
GF+ SD D A+ G L ++V++
Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 46 EKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP 105
E P ++ A L++G + + + F Q GT+ + N++T +S+ FGF+ S
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 106 DVAEVVADAMHGYLLFEHILQVHLIPPEHVHPK 138
D AE + + Y L +L V+ P P+
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE 234
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 45/79 (56%)
Query: 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110
+ +A L + + + E+++ FS++G + R+ +A++++TG++K F F+ ++D A
Sbjct: 199 DDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGRAKGFAFVSYADRTDAAK 258
Query: 111 VADAMHGYLLFEHILQVHL 129
+ M G+ IL+V
Sbjct: 259 ACEKMDGFGFGHLILRVEF 277
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A L + + E+E+ F +FG + R+ +A+++ TG +K F FI ++D D A +
Sbjct: 223 ATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYADRDDAVKACN 282
Query: 114 AMHGYLLFEHILQVHL 129
M G+ IL+V
Sbjct: 283 KMDGFGFRHLILRVEF 298
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G +P ++ F G + + + +K TG+S+ FGF+ S E A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 116 HGYLLFEHILQVHLIPPEHVHPKLWRGFNHG 146
+GY L L+V+ PP PK GF+ G
Sbjct: 153 NGYELDGRPLRVNAGPP---PPKREDGFSRG 180
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
+Y+G + + + + FS+ G + R+ ++ +G+SK FGF+ + D ++ V +A+
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY---DSSQEVQNAI 262
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ +M
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 496
Query: 116 HGYLLFEHILQVHLIPPEHVH 136
+G+ + L+V L P+ +
Sbjct: 497 NGFQIGMKRLKVQLKRPKDAN 517
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG+IPR EK++ F +FG I L + +++ TG K F+ + + A A+
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 116 H 116
H
Sbjct: 109 H 109
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + E ++ F FG+I I R G SK F+++S A+ A+
Sbjct: 137 LFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISAL 195
Query: 116 HG 117
HG
Sbjct: 196 HG 197
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE 109
+N + V+Y+G IP E+++ F Q G ++ ++ + ++G+ K +GF E+ DP A
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60
Query: 110 VVADAMHGYLLFEHILQVHLIPPEHVH--PKLWRGFNHGYKPLDWVQ 154
++ Y L+V + + KL +GY P +
Sbjct: 61 SAVRNLNNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSYAN 107
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 37 GGPRRKLPEEKPLVNKAAV-------LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNK 89
GGP PL+ L + +P+ + E + F G I ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133
TG+S +GF+ +SDP+ A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS 118
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A LY+ +P+ +KEM FSQ+G I RI ++ TG S+ GFI F AE
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 114 AMHG 117
++G
Sbjct: 185 GLNG 188
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 67 EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126
E + F FG + +++ R+ T K K FGF+ ++ D A + +++GY L E +LQ
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 127 VHL 129
V
Sbjct: 357 VSF 359
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 37 GGPRRKLPEEKPLVNKAAV-------LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNK 89
GGP PL+ L + +P+ + E + F G I ++ R+K
Sbjct: 15 GGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 90 KTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHV 135
TG+S +GF+ +SDP+ A+ + ++G L ++V P
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSA 120
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A LY+ +P+ +KEM FSQ+G I RI ++ TG S+ GFI F AE
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 114 AMHG 117
++G
Sbjct: 185 GLNG 188
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 67 EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126
E + F FG + +++ R+ T K K FGF+ ++ D A + +++GY L E +LQ
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 127 VHL 129
V
Sbjct: 357 VSF 359
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFG 98
P+R +P E+ K A +++G +P E+E FF+QFG + + +K TG+ + FG
Sbjct: 234 PKRAIPREE--QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFG 291
Query: 99 FIEFSDPDVAEVV 111
F+ + + E
Sbjct: 292 FVTYENESAVEAT 304
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104
E P + ++IG + + + +F QFG + + R+ TG+S+ FGF+ F +
Sbjct: 154 ETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Query: 105 PDVAEVVADAMHGYLLFEHILQVHLIPPEHVHPK 138
P V + EH L +I P+ P+
Sbjct: 214 PKCVNEV-------MSKEHHLDGKIIDPKRAIPR 240
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ +M
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438
Query: 116 HGYLLFEHILQVHLIPPEHVH 136
+G+ + L+V L P+ +
Sbjct: 439 NGFQIGMKRLKVQLKRPKDAN 459
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L+IG+IPR EK++ F QFG I L + ++K TG K F+ + + A A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + ++++ F FG I + R G SK F++F A+ +A+
Sbjct: 97 LFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINAL 155
Query: 116 HG 117
HG
Sbjct: 156 HG 157
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 442 NGFQIGMKRLKVQL 455
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR EK++ F QFG I L + ++K TG K F+ + D A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + ++++ F FGTI + R G SK F++F A+ + +
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTL 155
Query: 116 H 116
H
Sbjct: 156 H 156
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 438 NGFQIGMKRLKVQL 451
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR EK++ F QFG I L + ++K TG K F+ + D A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G + + ++++ F FGTI + R G SK F++F A+ + +
Sbjct: 97 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINTL 155
Query: 116 H 116
H
Sbjct: 156 H 156
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
++I +P+ F + E+ F FG + ++ ++ T +SK FGF+ F +P A+ AM
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 116 HGYLLFEHILQVHL 129
+G+ + L+V L
Sbjct: 442 NGFQIGMKRLKVQL 455
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L++G+IPR EK++ F QFG I L + ++K TG K F+ + D A A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 116 H 116
H
Sbjct: 69 H 69
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
+ +Y+ +P +++ FS++G + ++ I ++K T +SK FI F D D A+
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTR 69
Query: 114 AMHGYLLFEHILQVHLIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYEC 173
A++ LF +++ + + R N+ K + EC E+ + Y C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCY---ECG------ESGHLSYAC 120
Query: 174 PE 175
P+
Sbjct: 121 PK 122
>sp|Q0CPF9|EIF3G_ASPTN Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3
SV=1
Length = 286
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A L + + E E+ F +FG + R+ +AR+++T ++K F FI F+D A D
Sbjct: 206 ATLRVTNVSELAEEGELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRTDAARACD 265
Query: 114 AMHGYLLFEHILQVHL 129
M G+ IL+V
Sbjct: 266 KMDGFGYRHLILRVEF 281
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115
L + +P+ ++E+ + F G I ++ R+K TG+S +GF+ + DP AE + +
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 116 HGYLLFEHILQVHLIPPEHVH 136
+G L ++V P
Sbjct: 101 NGLRLQTKTIKVSYARPSSAS 121
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113
A LY+ +P+ +KE+ FSQ+G I RI ++ TG S+ GFI F AE
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 114 AMHG 117
++G
Sbjct: 185 GLNG 188
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 67 EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126
E + F FG + +++ R+ T K K FGF+ ++ D A + +++GY L + +LQ
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 127 VHL 129
V
Sbjct: 349 VSF 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,544,700
Number of Sequences: 539616
Number of extensions: 3234338
Number of successful extensions: 7880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 6768
Number of HSP's gapped (non-prelim): 1273
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)