Query 042948
Match_columns 192
No_of_seqs 247 out of 2260
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1E-19 2.2E-24 132.8 13.6 91 50-140 31-121 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.9E-18 4E-23 143.3 11.5 82 53-134 3-84 (352)
3 TIGR01659 sex-lethal sex-letha 99.8 2.4E-18 5.1E-23 142.0 11.5 86 49-134 103-188 (346)
4 KOG0131 Splicing factor 3b, su 99.8 1.4E-18 3E-23 127.5 8.7 129 49-180 5-133 (203)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 8.9E-18 1.9E-22 139.2 14.7 83 52-134 268-350 (352)
6 PF00076 RRM_1: RNA recognitio 99.7 2E-17 4.4E-22 105.5 9.7 70 56-126 1-70 (70)
7 KOG0122 Translation initiation 99.7 5.7E-17 1.2E-21 124.0 10.4 85 49-133 185-269 (270)
8 KOG4208 Nucleolar RNA-binding 99.7 5.8E-17 1.3E-21 121.2 9.4 146 45-190 41-211 (214)
9 TIGR01659 sex-lethal sex-letha 99.7 1.1E-16 2.4E-21 132.2 12.1 107 28-134 167-276 (346)
10 TIGR01645 half-pint poly-U bin 99.7 1.2E-16 2.6E-21 139.1 12.3 106 29-134 168-285 (612)
11 KOG0125 Ataxin 2-binding prote 99.7 1.7E-16 3.6E-21 126.0 10.3 101 31-133 73-174 (376)
12 KOG0121 Nuclear cap-binding pr 99.7 8.3E-17 1.8E-21 111.9 7.3 83 50-132 33-115 (153)
13 TIGR01645 half-pint poly-U bin 99.7 3.3E-17 7.2E-22 142.6 6.4 81 51-131 105-185 (612)
14 KOG0126 Predicted RNA-binding 99.7 6.4E-18 1.4E-22 124.0 0.3 82 50-131 32-113 (219)
15 KOG0149 Predicted RNA-binding 99.7 1.9E-16 4.2E-21 120.6 7.4 79 53-132 12-90 (247)
16 KOG0145 RNA-binding protein EL 99.7 3.7E-16 8.1E-21 120.7 8.9 137 50-190 38-177 (360)
17 PF14259 RRM_6: RNA recognitio 99.7 1.2E-15 2.6E-20 97.7 9.6 70 56-126 1-70 (70)
18 KOG0111 Cyclophilin-type pepti 99.6 1.5E-16 3.2E-21 120.2 5.1 88 50-137 7-94 (298)
19 KOG0117 Heterogeneous nuclear 99.6 3.3E-15 7.1E-20 122.8 13.3 96 45-143 75-171 (506)
20 KOG0113 U1 small nuclear ribon 99.6 1.4E-15 3.1E-20 119.4 10.1 86 50-135 98-183 (335)
21 PLN03120 nucleic acid binding 99.6 1.8E-15 3.8E-20 118.6 10.7 76 53-132 4-79 (260)
22 TIGR01648 hnRNP-R-Q heterogene 99.6 2E-15 4.3E-20 131.2 12.0 101 29-132 36-137 (578)
23 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-15 3.3E-20 133.3 11.0 79 55-133 2-80 (562)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.7E-15 5.8E-20 130.2 12.4 82 52-133 294-375 (509)
25 KOG0144 RNA-binding protein CU 99.6 5.7E-16 1.2E-20 126.8 7.5 131 45-175 26-176 (510)
26 KOG0107 Alternative splicing f 99.6 1.5E-15 3.3E-20 111.0 8.4 80 51-135 8-87 (195)
27 TIGR01622 SF-CC1 splicing fact 99.6 3.9E-15 8.4E-20 127.6 12.1 81 52-132 185-265 (457)
28 PLN03213 repressor of silencin 99.6 4E-15 8.6E-20 123.9 10.0 80 50-133 7-88 (759)
29 KOG4207 Predicted splicing fac 99.6 2.2E-15 4.7E-20 112.9 6.9 81 52-132 12-92 (256)
30 KOG0130 RNA-binding protein RB 99.6 3E-15 6.4E-20 105.1 6.9 84 51-134 70-153 (170)
31 PLN03121 nucleic acid binding 99.6 1.8E-14 3.9E-19 111.3 11.5 78 51-132 3-80 (243)
32 TIGR01628 PABP-1234 polyadenyl 99.6 1.4E-14 3E-19 127.2 11.4 84 50-134 282-365 (562)
33 smart00362 RRM_2 RNA recogniti 99.6 2.3E-14 5E-19 90.7 9.4 72 55-128 1-72 (72)
34 TIGR01622 SF-CC1 splicing fact 99.6 2E-14 4.3E-19 123.2 11.3 83 50-133 86-168 (457)
35 KOG0148 Apoptosis-promoting RN 99.6 1.1E-14 2.3E-19 113.2 8.6 81 54-134 63-143 (321)
36 KOG0144 RNA-binding protein CU 99.6 4.6E-15 1E-19 121.5 6.7 98 39-137 108-210 (510)
37 smart00360 RRM RNA recognition 99.5 4.5E-14 9.8E-19 89.0 8.8 71 58-128 1-71 (71)
38 COG0724 RNA-binding proteins ( 99.5 4E-14 8.7E-19 111.6 10.4 80 53-132 115-194 (306)
39 KOG0131 Splicing factor 3b, su 99.5 5.9E-15 1.3E-19 108.5 4.9 106 30-135 71-179 (203)
40 KOG0114 Predicted RNA-binding 99.5 8.7E-14 1.9E-18 93.5 9.6 82 50-134 15-96 (124)
41 KOG0108 mRNA cleavage and poly 99.5 2.5E-14 5.5E-19 120.3 8.2 83 54-136 19-101 (435)
42 KOG0123 Polyadenylate-binding 99.5 3.6E-14 7.7E-19 118.0 8.8 104 26-136 53-156 (369)
43 KOG0148 Apoptosis-promoting RN 99.5 7.9E-14 1.7E-18 108.4 9.6 78 50-133 161-238 (321)
44 cd00590 RRM RRM (RNA recogniti 99.5 3.8E-13 8.3E-18 85.5 10.1 74 55-129 1-74 (74)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.1E-13 6.7E-18 116.7 11.5 78 51-133 273-351 (481)
46 KOG0117 Heterogeneous nuclear 99.5 2.5E-13 5.4E-18 111.9 8.9 95 33-135 233-333 (506)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 6E-13 1.3E-17 114.9 10.8 76 53-134 2-79 (481)
48 TIGR01648 hnRNP-R-Q heterogene 99.4 9.1E-13 2E-17 114.8 11.3 75 52-134 232-308 (578)
49 KOG0124 Polypyrimidine tract-b 99.4 8.8E-14 1.9E-18 112.2 4.5 77 53-129 113-189 (544)
50 KOG0145 RNA-binding protein EL 99.4 1.1E-12 2.3E-17 101.8 9.8 81 52-132 277-357 (360)
51 KOG0127 Nucleolar protein fibr 99.4 5.8E-13 1.3E-17 112.2 8.7 82 53-135 117-198 (678)
52 KOG0105 Alternative splicing f 99.4 4E-13 8.7E-18 99.2 6.8 81 51-134 4-84 (241)
53 KOG0146 RNA-binding protein ET 99.4 2.1E-13 4.7E-18 105.9 5.6 87 49-135 281-367 (371)
54 smart00361 RRM_1 RNA recogniti 99.4 2.5E-12 5.4E-17 82.4 8.4 61 67-127 2-69 (70)
55 KOG0127 Nucleolar protein fibr 99.4 9.1E-13 2E-17 111.0 7.4 83 52-134 4-86 (678)
56 PF13893 RRM_5: RNA recognitio 99.4 5E-12 1.1E-16 77.4 8.2 56 70-130 1-56 (56)
57 KOG0415 Predicted peptidyl pro 99.4 1.5E-12 3.3E-17 104.7 7.1 85 50-134 236-320 (479)
58 KOG0147 Transcriptional coacti 99.4 1.1E-12 2.4E-17 110.5 6.3 78 55-132 280-357 (549)
59 KOG0146 RNA-binding protein ET 99.4 1.9E-12 4.2E-17 100.7 6.9 98 38-136 3-104 (371)
60 KOG0109 RNA-binding protein LA 99.3 8.7E-12 1.9E-16 98.0 8.4 73 54-134 3-75 (346)
61 KOG0124 Polypyrimidine tract-b 99.3 9.6E-12 2.1E-16 100.6 7.9 105 28-132 173-289 (544)
62 KOG4205 RNA-binding protein mu 99.3 3.2E-12 6.9E-17 103.5 3.8 83 52-135 5-87 (311)
63 KOG4206 Spliceosomal protein s 99.3 2.4E-11 5.3E-16 92.5 8.3 81 52-135 8-92 (221)
64 KOG4205 RNA-binding protein mu 99.2 4.4E-11 9.6E-16 96.9 8.2 103 33-136 70-179 (311)
65 KOG4212 RNA-binding protein hn 99.2 6E-11 1.3E-15 97.9 8.6 80 52-132 43-123 (608)
66 TIGR01642 U2AF_lg U2 snRNP aux 99.2 9.4E-11 2E-15 101.8 9.8 73 50-129 172-256 (509)
67 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.5E-10 3.2E-15 98.4 10.6 84 51-134 403-486 (940)
68 KOG0109 RNA-binding protein LA 99.2 3.2E-11 6.9E-16 94.9 5.0 97 29-134 55-151 (346)
69 KOG0123 Polyadenylate-binding 99.2 1.1E-10 2.4E-15 97.3 8.2 101 54-169 2-102 (369)
70 KOG0110 RNA-binding protein (R 99.2 2.6E-11 5.6E-16 105.0 4.5 86 50-135 610-695 (725)
71 KOG0132 RNA polymerase II C-te 99.1 1.4E-10 3E-15 101.4 8.3 101 51-158 419-522 (894)
72 KOG0110 RNA-binding protein (R 99.1 6.1E-10 1.3E-14 96.6 10.0 78 54-131 516-596 (725)
73 KOG0533 RRM motif-containing p 99.1 9.8E-10 2.1E-14 86.0 9.0 84 50-134 80-163 (243)
74 KOG0153 Predicted RNA-binding 99.1 9E-10 2E-14 88.6 8.6 78 49-132 224-302 (377)
75 KOG0226 RNA-binding proteins [ 99.0 8.4E-10 1.8E-14 85.4 5.7 91 39-129 176-266 (290)
76 KOG1548 Transcription elongati 99.0 6.9E-09 1.5E-13 83.6 11.0 82 51-133 132-221 (382)
77 KOG0151 Predicted splicing reg 99.0 5.8E-09 1.3E-13 90.7 10.5 86 48-133 169-257 (877)
78 KOG4209 Splicing factor RNPS1, 98.9 2.9E-09 6.3E-14 83.3 5.4 85 48-133 96-180 (231)
79 KOG4212 RNA-binding protein hn 98.9 6.8E-09 1.5E-13 86.0 7.1 76 50-130 533-608 (608)
80 KOG0116 RasGAP SH3 binding pro 98.8 9.6E-09 2.1E-13 86.4 7.8 83 50-133 285-367 (419)
81 KOG1457 RNA binding protein (c 98.8 5.1E-08 1.1E-12 74.4 9.8 85 51-135 32-120 (284)
82 PF04059 RRM_2: RNA recognitio 98.8 7.6E-08 1.7E-12 65.1 9.2 80 54-133 2-87 (97)
83 KOG0147 Transcriptional coacti 98.8 9.7E-10 2.1E-14 93.0 -0.4 85 49-134 175-259 (549)
84 KOG0106 Alternative splicing f 98.8 8.5E-09 1.8E-13 79.2 4.3 72 54-133 2-73 (216)
85 KOG4660 Protein Mei2, essentia 98.7 9.4E-09 2E-13 87.3 4.0 72 50-126 72-143 (549)
86 KOG4454 RNA binding protein (R 98.7 8.1E-09 1.7E-13 78.5 1.7 81 51-133 7-87 (267)
87 KOG0120 Splicing factor U2AF, 98.6 6.7E-08 1.4E-12 82.5 4.5 88 51-138 287-374 (500)
88 KOG4211 Splicing factor hnRNP- 98.4 3.3E-06 7.1E-11 71.2 9.8 80 52-135 9-88 (510)
89 KOG1190 Polypyrimidine tract-b 98.3 5.3E-06 1.1E-10 68.6 10.2 78 53-135 297-375 (492)
90 KOG4211 Splicing factor hnRNP- 98.3 3.4E-06 7.4E-11 71.1 7.4 78 52-131 102-180 (510)
91 KOG3152 TBP-binding protein, a 98.2 6.7E-07 1.5E-11 69.6 2.9 73 52-124 73-157 (278)
92 KOG4206 Spliceosomal protein s 98.2 7.1E-06 1.5E-10 62.9 8.1 79 48-131 141-220 (221)
93 PF11608 Limkain-b1: Limkain b 98.2 1.4E-05 3E-10 52.2 7.3 70 54-133 3-77 (90)
94 KOG1995 Conserved Zn-finger pr 98.1 2.5E-06 5.4E-11 69.4 4.3 85 50-134 63-155 (351)
95 COG5175 MOT2 Transcriptional r 98.1 1.2E-05 2.5E-10 65.2 7.7 80 54-133 115-203 (480)
96 KOG4210 Nuclear localization s 98.1 2.1E-06 4.5E-11 69.4 3.0 84 51-135 182-266 (285)
97 PF08777 RRM_3: RNA binding mo 98.1 9.5E-06 2.1E-10 56.0 5.8 73 53-131 1-78 (105)
98 KOG1457 RNA binding protein (c 98.0 6.7E-06 1.4E-10 63.0 4.3 63 54-120 211-273 (284)
99 KOG4849 mRNA cleavage factor I 97.9 7.2E-06 1.6E-10 66.6 3.4 77 54-130 81-159 (498)
100 KOG2314 Translation initiation 97.9 8E-05 1.7E-09 64.1 8.2 79 51-130 56-141 (698)
101 KOG0106 Alternative splicing f 97.7 2.5E-05 5.4E-10 60.2 3.1 76 50-133 96-171 (216)
102 KOG0129 Predicted RNA-binding 97.7 0.00038 8.3E-09 59.3 10.2 66 50-116 256-327 (520)
103 KOG4307 RNA binding protein RB 97.7 0.00018 4E-09 63.3 8.1 77 52-129 866-943 (944)
104 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00015 3.2E-09 43.6 5.3 52 54-112 2-53 (53)
105 KOG0120 Splicing factor U2AF, 97.6 0.00016 3.4E-09 62.2 6.9 67 69-135 425-494 (500)
106 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.0005 1.1E-08 46.9 7.6 78 52-131 5-90 (100)
107 KOG1456 Heterogeneous nuclear 97.6 0.00087 1.9E-08 55.2 10.0 82 49-135 283-365 (494)
108 KOG1548 Transcription elongati 97.6 0.00046 9.9E-09 56.2 8.1 79 52-134 264-353 (382)
109 KOG0129 Predicted RNA-binding 97.5 0.00032 7E-09 59.8 7.3 66 49-114 366-432 (520)
110 KOG1855 Predicted RNA-binding 97.5 0.00012 2.6E-09 61.0 4.4 77 43-119 221-310 (484)
111 KOG1365 RNA-binding protein Fu 97.5 0.0002 4.3E-09 59.1 5.2 81 53-134 280-363 (508)
112 KOG1190 Polypyrimidine tract-b 97.4 0.00049 1.1E-08 57.2 6.8 78 51-132 412-490 (492)
113 PF08952 DUF1866: Domain of un 97.4 0.0011 2.3E-08 48.1 7.7 75 50-133 24-107 (146)
114 KOG0128 RNA-binding protein SA 97.4 2E-05 4.4E-10 70.4 -1.8 70 53-122 667-736 (881)
115 KOG2202 U2 snRNP splicing fact 97.3 0.00011 2.4E-09 57.5 2.1 64 69-133 84-148 (260)
116 PF08675 RNA_bind: RNA binding 97.1 0.0034 7.4E-08 41.0 7.0 56 53-117 9-64 (87)
117 KOG2416 Acinus (induces apopto 97.1 0.00068 1.5E-08 58.8 4.9 78 50-133 441-522 (718)
118 KOG0128 RNA-binding protein SA 97.0 0.00033 7.2E-09 62.9 1.8 81 53-134 736-816 (881)
119 KOG0112 Large RNA-binding prot 97.0 0.00035 7.5E-09 63.1 1.9 101 50-151 369-470 (975)
120 KOG0112 Large RNA-binding prot 96.9 0.0027 5.9E-08 57.6 6.4 78 51-134 453-532 (975)
121 KOG1365 RNA-binding protein Fu 96.9 0.0012 2.5E-08 54.7 3.7 71 53-125 161-235 (508)
122 KOG4676 Splicing factor, argin 96.9 0.0024 5.2E-08 53.0 5.5 79 53-132 7-88 (479)
123 KOG0115 RNA-binding protein p5 96.8 0.001 2.2E-08 52.2 2.9 95 28-129 12-110 (275)
124 KOG0105 Alternative splicing f 96.8 0.0077 1.7E-07 45.3 7.2 71 52-129 114-186 (241)
125 KOG1996 mRNA splicing factor [ 96.7 0.0069 1.5E-07 48.6 7.1 66 68-133 301-367 (378)
126 KOG1456 Heterogeneous nuclear 96.7 0.014 3E-07 48.4 8.9 79 52-135 119-201 (494)
127 PF10309 DUF2414: Protein of u 96.6 0.019 4.1E-07 35.5 7.0 55 53-115 5-62 (62)
128 KOG2193 IGF-II mRNA-binding pr 96.5 0.0027 5.8E-08 53.2 3.7 75 55-135 3-78 (584)
129 KOG2068 MOT2 transcription fac 96.5 0.001 2.2E-08 54.0 0.9 80 54-133 78-163 (327)
130 PF07576 BRAP2: BRCA1-associat 96.4 0.072 1.6E-06 37.0 9.6 66 54-121 13-80 (110)
131 KOG2253 U1 snRNP complex, subu 96.3 0.0062 1.3E-07 53.6 4.7 73 48-129 35-107 (668)
132 KOG4307 RNA binding protein RB 96.2 0.004 8.6E-08 55.2 3.0 82 49-131 430-512 (944)
133 PF15023 DUF4523: Protein of u 95.9 0.062 1.3E-06 38.8 7.6 74 50-131 83-160 (166)
134 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.013 2.7E-07 44.2 4.2 82 51-132 5-97 (176)
135 KOG4285 Mitotic phosphoprotein 95.0 0.16 3.4E-06 41.2 7.7 74 53-134 197-271 (350)
136 PF04847 Calcipressin: Calcipr 93.8 0.25 5.5E-06 37.4 6.3 62 67-134 9-72 (184)
137 KOG4210 Nuclear localization s 93.8 0.079 1.7E-06 43.0 3.7 82 51-132 86-167 (285)
138 KOG2135 Proteins containing th 93.7 0.045 9.7E-07 46.7 2.3 74 54-134 373-447 (526)
139 PF11767 SET_assoc: Histone ly 93.7 0.38 8.2E-06 30.1 5.9 55 64-127 11-65 (66)
140 PF03880 DbpA: DbpA RNA bindin 93.5 0.74 1.6E-05 29.3 7.3 59 63-130 11-74 (74)
141 KOG4660 Protein Mei2, essentia 93.3 0.17 3.8E-06 43.9 5.1 57 77-133 413-473 (549)
142 KOG2591 c-Mpl binding protein, 93.1 0.21 4.6E-06 43.6 5.3 73 50-129 172-248 (684)
143 KOG4454 RNA binding protein (R 92.8 0.024 5.2E-07 43.7 -0.6 80 29-121 68-151 (267)
144 KOG0804 Cytoplasmic Zn-finger 92.7 0.64 1.4E-05 39.7 7.5 68 53-122 74-142 (493)
145 KOG4574 RNA-binding protein (c 92.4 0.12 2.5E-06 47.2 3.0 76 55-136 300-377 (1007)
146 KOG4410 5-formyltetrahydrofola 86.7 1.8 3.9E-05 35.0 5.3 58 54-116 331-395 (396)
147 KOG2891 Surface glycoprotein [ 84.5 0.4 8.6E-06 38.5 0.7 69 52-120 148-247 (445)
148 KOG4483 Uncharacterized conser 83.4 3.5 7.5E-05 34.9 5.7 56 52-114 390-446 (528)
149 KOG4676 Splicing factor, argin 81.0 0.21 4.5E-06 41.9 -2.2 77 53-134 151-227 (479)
150 KOG2318 Uncharacterized conser 80.2 13 0.00028 33.1 8.2 82 50-131 171-306 (650)
151 KOG2295 C2H2 Zn-finger protein 71.2 0.6 1.3E-05 40.9 -2.0 73 52-124 230-302 (648)
152 smart00596 PRE_C2HC PRE_C2HC d 63.6 18 0.00039 22.8 4.0 61 68-131 2-63 (69)
153 PF03468 XS: XS domain; Inter 62.2 15 0.00032 25.7 3.8 46 65-113 29-75 (116)
154 COG0724 RNA-binding proteins ( 61.4 10 0.00022 29.0 3.4 63 50-112 222-284 (306)
155 PF07530 PRE_C2HC: Associated 58.4 30 0.00066 21.6 4.4 62 68-132 2-64 (68)
156 KOG2193 IGF-II mRNA-binding pr 58.2 0.48 1E-05 40.2 -4.8 77 51-131 78-155 (584)
157 PF10567 Nab6_mRNP_bdg: RNA-re 57.5 20 0.00043 29.2 4.2 79 53-131 15-106 (309)
158 PF15513 DUF4651: Domain of un 57.1 31 0.00068 21.2 4.1 18 68-85 9-26 (62)
159 KOG4008 rRNA processing protei 56.6 11 0.00024 29.7 2.6 36 48-83 35-70 (261)
160 PF09707 Cas_Cas2CT1978: CRISP 54.8 32 0.00069 22.7 4.2 47 54-103 26-72 (86)
161 KOG1295 Nonsense-mediated deca 49.4 26 0.00055 29.6 3.8 68 53-120 7-77 (376)
162 KOG4365 Uncharacterized conser 46.7 3 6.6E-05 35.7 -1.9 79 54-133 4-82 (572)
163 KOG4019 Calcineurin-mediated s 41.3 25 0.00054 26.6 2.4 75 54-134 11-91 (193)
164 PF07292 NID: Nmi/IFP 35 domai 40.3 65 0.0014 21.3 4.0 25 50-74 49-73 (88)
165 COG0030 KsgA Dimethyladenosine 39.7 40 0.00086 27.1 3.5 35 54-88 96-130 (259)
166 PF02714 DUF221: Domain of unk 39.6 46 0.001 27.1 4.0 34 98-133 1-34 (325)
167 PRK11558 putative ssRNA endonu 39.4 69 0.0015 21.7 4.0 48 54-104 28-75 (97)
168 KOG0156 Cytochrome P450 CYP2 s 39.0 65 0.0014 28.3 5.0 59 57-125 36-97 (489)
169 PRK11230 glycolate oxidase sub 31.0 2.6E+02 0.0055 24.7 7.4 64 52-116 188-255 (499)
170 KOG3424 40S ribosomal protein 30.0 2E+02 0.0043 20.3 5.5 46 64-110 34-84 (132)
171 PRK14548 50S ribosomal protein 30.0 1.6E+02 0.0035 19.2 5.8 56 56-114 23-80 (84)
172 KOG4213 RNA-binding protein La 29.8 81 0.0018 23.9 3.5 56 53-114 111-169 (205)
173 COG5193 LHP1 La protein, small 29.4 24 0.00052 30.0 0.7 60 53-112 174-243 (438)
174 PF03439 Spt5-NGN: Early trans 28.5 70 0.0015 20.7 2.7 26 94-119 43-68 (84)
175 PF00398 RrnaAD: Ribosomal RNA 27.6 74 0.0016 25.3 3.2 24 52-75 96-119 (262)
176 TIGR03636 L23_arch archaeal ri 26.4 1.8E+02 0.0039 18.6 5.9 55 56-113 16-72 (77)
177 PF05189 RTC_insert: RNA 3'-te 25.5 1.8E+02 0.004 19.3 4.5 49 54-102 11-64 (103)
178 PRK11901 hypothetical protein; 24.8 2E+02 0.0043 24.0 5.2 62 52-118 244-307 (327)
179 PF04026 SpoVG: SpoVG; InterP 24.1 1.8E+02 0.0038 19.0 4.0 26 79-104 2-27 (84)
180 TIGR01873 cas_CT1978 CRISPR-as 22.2 97 0.0021 20.5 2.4 48 54-104 26-74 (87)
181 PRK00274 ksgA 16S ribosomal RN 21.8 1.1E+02 0.0024 24.4 3.2 22 55-76 107-128 (272)
182 PF15407 Spo7_2_N: Sporulation 20.3 65 0.0014 20.1 1.3 19 51-69 25-43 (67)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=1e-19 Score=132.79 Aligned_cols=91 Identities=22% Similarity=0.419 Sum_probs=83.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+++|||+|||+.+++++|+++|.+||.|.+|.++.++.+++++|||||+|.+.++|+.|++.||+..|+|+.|.|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccc
Q 042948 130 IPPEHVHPKLW 140 (192)
Q Consensus 130 a~~~~~~~~~~ 140 (192)
+.++...+..+
T Consensus 111 a~~~~~~~~~~ 121 (144)
T PLN03134 111 ANDRPSAPRAY 121 (144)
T ss_pred CCcCCCCCCCC
Confidence 98766544433
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=1.9e-18 Score=143.27 Aligned_cols=82 Identities=24% Similarity=0.536 Sum_probs=78.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
..+|||+|||..+++++|+++|+.||+|.+|+++.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred CC
Q 042948 133 EH 134 (192)
Q Consensus 133 ~~ 134 (192)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 64
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=2.4e-18 Score=142.03 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=81.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||+++++++|+++|..||.|..|+|+.|..+++++|||||+|.+.++|..||..||+..+.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45677899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.+..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 4
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.77 E-value=1.4e-18 Score=127.54 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=115.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
+.+...+||||||+..++++.|+++|-+.|+|.++++++|+.+..++||||++|.++++|+-|++.||...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCcccccccCCCCCCCchHHHHHHHhhcccccCceEecCccccccc
Q 042948 129 LIPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYECPEIVGYV 180 (192)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 180 (192)
.+.. ....+..+++...++++. .+.++...+.++.+|.-...|+++...
T Consensus 85 kas~--~~~nl~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 85 KASA--HQKNLDVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred eccc--ccccccccccccccccCc-chhHHHHHHHHHhccccccCCcccccc
Confidence 9883 335677789999999996 899999999999999777777766543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=8.9e-18 Score=139.22 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=79.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.+.+|||+|||+++++++|+++|++||.|.+++++.++.||.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 042948 132 PEH 134 (192)
Q Consensus 132 ~~~ 134 (192)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 764
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2e-17 Score=105.51 Aligned_cols=70 Identities=36% Similarity=0.689 Sum_probs=67.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 56 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|..|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 4899999999999999999999999999999999885
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5.7e-17 Score=123.99 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
...+.++|-|.||+.+++|++|+++|..||.|..|.+.+|+.||.++|||||.|.+.++|.+||..|||+-+++-.|.|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC
Q 042948 129 LIPPE 133 (192)
Q Consensus 129 ~a~~~ 133 (192)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99985
No 8
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.71 E-value=5.8e-17 Score=121.21 Aligned_cols=146 Identities=38% Similarity=0.659 Sum_probs=125.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 042948 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQF-GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEH 123 (192)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~ 123 (192)
+..+.......+||..+|..+.+.++..+|.+| |.+..+++.+++.||.++|||||+|.+.+.|.-|.+.||++.+.++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 445566777899999999999999999999998 7788899999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCC-CCCcccccccCCCCCCCchHHHHHHH-----------------------hhcccccCceEecCcccccc
Q 042948 124 ILQVHLIPPE-HVHPKLWRGFNHGYKPLDWVQVECKR-----------------------QNKRIEAASIEYECPEIVGY 179 (192)
Q Consensus 124 ~i~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~gi~~~~~~~~~~ 179 (192)
.|.|.+-.|. ..+...|.+++.++.+.+...+.+.. ..+++.+.||.+...+++..
T Consensus 121 lL~c~vmppe~~v~~~~~k~~~~~~~~~~~~~~k~~~~~~~~t~~e~~k~~~k~~~~~~~~~~~~~~~~i~~~~~e~~~~ 200 (214)
T KOG4208|consen 121 LLECHVMPPEQKVEKNLKKVSGTPFKPGKTVPIKRLQDNKDLTHEERRKKLVKENKKDAKDDKAVTEAGIEPEVSEPVTK 200 (214)
T ss_pred eeeeEEeCchhhhhhhhhhhcCCcCCCCCcccccccCcccccchHHhhHHHHhhhhhhhcccchhcccCccccccccccc
Confidence 9999999998 77788899988888877654433321 11677899999999999988
Q ss_pred cCCCCcccccc
Q 042948 180 VMPAPKKIKFD 190 (192)
Q Consensus 180 ~~~~~~~~~~~ 190 (192)
..+.+..+++.
T Consensus 201 ~~~~~~~kk~~ 211 (214)
T KOG4208|consen 201 KVPIKTRKKES 211 (214)
T ss_pred cCCCcccccCC
Confidence 88877776654
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=1.1e-16 Score=132.17 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=92.0
Q ss_pred CCCCCccCCCCCCCCCCCCCC-CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHH
Q 042948 28 DTADFLPLEGGPRRKLPEEKP-LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106 (192)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~ 106 (192)
..+++..+.++++++...... .....++|||+|||..+++++|+++|++||.|..+.++.++.+++++|||||+|.+.+
T Consensus 167 ~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 167 KNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred HHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 356788888888776654321 2334678999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHhCCceeCC--eeEEEEEcCCCC
Q 042948 107 VAEVVADAMHGYLLFE--HILQVHLIPPEH 134 (192)
Q Consensus 107 ~a~~al~~lng~~l~g--~~i~v~~a~~~~ 134 (192)
+|+.||+.||+..+.+ ++|.|.++....
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999999998865 789999988653
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=1.2e-16 Score=139.11 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=90.9
Q ss_pred CCCCccCCCCCCCCCCCCCC------------CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCccc
Q 042948 29 TADFLPLEGGPRRKLPEEKP------------LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKH 96 (192)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~------------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g 96 (192)
.+|+..+.|+++++...... .....++|||+|||+++++++|+++|+.||.|.++++.+++.+|.++|
T Consensus 168 ~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKG 247 (612)
T TIGR01645 168 QMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG 247 (612)
T ss_pred hcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCC
Confidence 46777778887655432211 122357999999999999999999999999999999999998999999
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCCC
Q 042948 97 FGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEH 134 (192)
Q Consensus 97 ~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~~ 134 (192)
||||+|.+.++|..|+..|||..|+|+.|+|.++.+..
T Consensus 248 fGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 248 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred eEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999999999999999999988654
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=125.99 Aligned_cols=101 Identities=24% Similarity=0.444 Sum_probs=86.2
Q ss_pred CCccCCCCCCCCCCCCCC-CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHH
Q 042948 31 DFLPLEGGPRRKLPEEKP-LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE 109 (192)
Q Consensus 31 ~~~~l~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~ 109 (192)
++...+|.++...+++.+ .....++|+|+|||+...+.||+.+|.+||.|.+|.|+.+. .-++|||||+|++.++|+
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADAD 150 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHH
Confidence 445556666655554443 24556899999999999999999999999999999999884 447999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEcCCC
Q 042948 110 VVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 110 ~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
+|-+.|||..+.||+|+|..+.++
T Consensus 151 RARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 151 RARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHhhcceeeceEEEEeccchh
Confidence 999999999999999999998876
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=8.3e-17 Score=111.90 Aligned_cols=83 Identities=22% Similarity=0.375 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+++||||||+..++|++|.++|+.+|+|..|-+-.|+.+..++|||||+|.+.++|..|+.-++|+.++.++|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34679999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred cCC
Q 042948 130 IPP 132 (192)
Q Consensus 130 a~~ 132 (192)
.-.
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 654
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=3.3e-17 Score=142.58 Aligned_cols=81 Identities=26% Similarity=0.477 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||||||+.+++++|+++|..||.|.+|.++.|+.+|+++|||||+|.+.++|..|+..|||..|+|+.|.|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q 042948 131 P 131 (192)
Q Consensus 131 ~ 131 (192)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 14
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=6.4e-18 Score=124.03 Aligned_cols=82 Identities=30% Similarity=0.578 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
-.++.-|||||||+..||.+|..+|++||+|..|.+++|+.||+++||||+.|++..+...|+..|||..|.|+.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 44
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.9e-16 Score=120.58 Aligned_cols=79 Identities=22% Similarity=0.412 Sum_probs=73.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
-++||||+|++.++.+.|+++|++||+|.+..++.|+.||+++|||||+|.+.++|.+|++. -+-.|+||+-.|.+|--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 46899999999999999999999999999999999999999999999999999999999975 45678999999988654
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3.7e-16 Score=120.72 Aligned_cols=137 Identities=20% Similarity=0.313 Sum_probs=115.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
......|.|.-||..+|+++++.+|...|+|.+|++++|+.+|.+.|||||.|-++.+|++|+..|||..+..+.|.|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccccCCCCCCCchHHHHHHHhhcccccCceEecCcccccccCC---CCcccccc
Q 042948 130 IPPEHVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASIEYECPEIVGYVMP---APKKIKFD 190 (192)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~~~~~ 190 (192)
++|.. ...+++|.-...++ +.|..++.+..+..+|-....-.++++... ....|.|+
T Consensus 118 ARPSs---~~Ik~aNLYvSGlP-ktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFD 177 (360)
T KOG0145|consen 118 ARPSS---DSIKDANLYVSGLP-KTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFD 177 (360)
T ss_pred ccCCh---hhhcccceEEecCC-ccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEec
Confidence 99975 44567777777787 567777777888888866666666666543 34444444
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=1.2e-15 Score=97.73 Aligned_cols=70 Identities=31% Similarity=0.640 Sum_probs=64.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 56 LYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 56 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
|||+|||+++++++|.++|+.||.|..+.+..++. +..+|+|||+|.+.++|..|+..++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999985 89999999999999999999999999999999874
No 18
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.5e-16 Score=120.22 Aligned_cols=88 Identities=32% Similarity=0.580 Sum_probs=83.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++||||+|...+++.-|...|-.||.|.+|.++.|..++++||||||+|...++|..||..||+.+|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc
Q 042948 130 IPPEHVHP 137 (192)
Q Consensus 130 a~~~~~~~ 137 (192)
|.|.+.+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99987654
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.3e-15 Score=122.83 Aligned_cols=96 Identities=23% Similarity=0.469 Sum_probs=86.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee-CCe
Q 042948 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL-FEH 123 (192)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l-~g~ 123 (192)
.+..+.+.++.||||.||.++.|++|.-+|+..|.|-+++|++|+.+|.++|||||+|.+.+.|+.|++.||+++| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3444557899999999999999999999999999999999999999999999999999999999999999999998 799
Q ss_pred eEEEEEcCCCCCCccccccc
Q 042948 124 ILQVHLIPPEHVHPKLWRGF 143 (192)
Q Consensus 124 ~i~v~~a~~~~~~~~~~~~~ 143 (192)
.|.|+.+..+ .++|.|.
T Consensus 155 ~igvc~Svan---~RLFiG~ 171 (506)
T KOG0117|consen 155 LLGVCVSVAN---CRLFIGN 171 (506)
T ss_pred EeEEEEeeec---ceeEecc
Confidence 9999998765 4666653
No 20
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.4e-15 Score=119.36 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..+.+||||+.|+++++|..|+..|+.||+|..|+|+.++.||+++|||||+|....+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
-.....
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 777654
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.8e-15 Score=118.56 Aligned_cols=76 Identities=16% Similarity=0.345 Sum_probs=70.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..|| .|||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998863 4689999999999999999 5999999999999999864
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=2e-15 Score=131.21 Aligned_cols=101 Identities=22% Similarity=0.427 Sum_probs=85.1
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHH
Q 042948 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108 (192)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a 108 (192)
-.++...+|.|...- +..+...+++|||+|||.++++++|.++|++||.|.+|+|++| .+|.++|||||+|.+.++|
T Consensus 36 ~~~g~r~~g~Pp~~~--~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A 112 (578)
T TIGR01648 36 QENGQRKYGGPPPGW--SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEA 112 (578)
T ss_pred ccCCcccCCCCCCcc--cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHH
Confidence 346666677665532 2333456799999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHhCCceeC-CeeEEEEEcCC
Q 042948 109 EVVADAMHGYLLF-EHILQVHLIPP 132 (192)
Q Consensus 109 ~~al~~lng~~l~-g~~i~v~~a~~ 132 (192)
+.||+.||+..+. |+.|.|..+..
T Consensus 113 ~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 113 KEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred HHHHHHcCCCeecCCcccccccccc
Confidence 9999999999884 78887776543
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.5e-15 Score=133.34 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=75.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
+|||||||.++|+++|+++|+.||.|.+|++++|..|++++|||||+|.+.++|.+|+..||+..+.|++|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999989999999999999999999999999999999999999997644
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=2.7e-15 Score=130.16 Aligned_cols=82 Identities=26% Similarity=0.506 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.+.|..|+..|||..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CC
Q 042948 132 PE 133 (192)
Q Consensus 132 ~~ 133 (192)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=5.7e-16 Score=126.81 Aligned_cols=131 Identities=22% Similarity=0.380 Sum_probs=100.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce-e--C
Q 042948 45 EEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYL-L--F 121 (192)
Q Consensus 45 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~-l--~ 121 (192)
+.+.++.+...+|||.+|..++|.+|+.+|++||.|.+|.+++|+.|+.++|||||.|.+.++|..|+.+||+.. | .
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 344556677789999999999999999999999999999999999999999999999999999999999999865 4 4
Q ss_pred CeeEEEEEcCCCCCC----ccccccc-------------CCCCCCCchHHHHHHHhhcccccCceEecCcc
Q 042948 122 EHILQVHLIPPEHVH----PKLWRGF-------------NHGYKPLDWVQVECKRQNKRIEAASIEYECPE 175 (192)
Q Consensus 122 g~~i~v~~a~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 175 (192)
.++|.|++|+.++.+ .++|.+. +.+|+-+....|.++.........|+.|.+.+
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHH
Confidence 678999999987654 2344443 22444444344444333344455567666554
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.5e-15 Score=110.96 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
+-.+.||||||+..+++.+|+..|..||+|..|.|...+ .|||||+|++..+|..|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 346899999999999999999999999999999998765 689999999999999999999999999999999998
Q ss_pred CCCCC
Q 042948 131 PPEHV 135 (192)
Q Consensus 131 ~~~~~ 135 (192)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 87643
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=3.9e-15 Score=127.58 Aligned_cols=81 Identities=31% Similarity=0.568 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|..|+..|||..|.|++|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999999889999999999999999999999999999999999999976
Q ss_pred C
Q 042948 132 P 132 (192)
Q Consensus 132 ~ 132 (192)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.61 E-value=4e-15 Score=123.92 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCH--HHHHHHHHHhCCceeCCeeEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP--DVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~--~~a~~al~~lng~~l~g~~i~v 127 (192)
.....+||||||++.+++++|+..|..||.|..|.|++. +| +|||||+|.+. .++.+||..|||..+.|+.|.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 344578999999999999999999999999999999944 67 89999999987 7899999999999999999999
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999875
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.60 E-value=2.2e-15 Score=112.90 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.-..|-|-||.+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....+|+.|+++|+|.+|+|+.|.|++|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 042948 132 P 132 (192)
Q Consensus 132 ~ 132 (192)
=
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 30
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3e-15 Score=105.12 Aligned_cols=84 Identities=18% Similarity=0.377 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
..+-.|||.++...+++++|.+.|..||+|..+++..|+.||..+|||.|+|.+...|+.|+..+||..|.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7653
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.8e-14 Score=111.32 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
+.+.+|||+||++.+|+++|+++|+.||.|.+|.|+++. ...|||||+|.+.+.+..|+ .|||..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 456899999999999999999999999999999999885 34579999999999999999 69999999999999875
Q ss_pred CC
Q 042948 131 PP 132 (192)
Q Consensus 131 ~~ 132 (192)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=1.4e-14 Score=127.23 Aligned_cols=84 Identities=26% Similarity=0.466 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+.+|||+||+.++++++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|||..++|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 3456789999999999999999999999999999999994 899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98764
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=2.3e-14 Score=90.73 Aligned_cols=72 Identities=35% Similarity=0.646 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
+|||+|||..++..+|+++|.+||.+..+.+..+. +.++|+|||+|.+.+.|..|+..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 7788999999999999999999999999999998763
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=2e-14 Score=123.24 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++.+|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..||. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999995 899999999999988
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 6643
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-14 Score=113.17 Aligned_cols=81 Identities=22% Similarity=0.453 Sum_probs=78.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
..|||+-|...++.+.|++.|..||+|.++++++|..|++++|||||.|-+.++|++||..|||..|++|.|+-.||..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 042948 134 H 134 (192)
Q Consensus 134 ~ 134 (192)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 4
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=4.6e-15 Score=121.53 Aligned_cols=98 Identities=22% Similarity=0.369 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCC--CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 042948 39 PRRKLPEEKPLVN--KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 39 ~~~~~~~~~~~~~--~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln 116 (192)
|+..++.+...++ ..+.||||.|+..++|.+++++|++||.|.+|.|.+|. .+.+||||||.|.+.+.|..||+.||
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc
Confidence 5666665544333 47899999999999999999999999999999999997 89999999999999999999999999
Q ss_pred Cce-e--CCeeEEEEEcCCCCCCc
Q 042948 117 GYL-L--FEHILQVHLIPPEHVHP 137 (192)
Q Consensus 117 g~~-l--~g~~i~v~~a~~~~~~~ 137 (192)
|.. + +..+|.|+||++++.+.
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred cceeeccCCCceEEEecccCCCch
Confidence 965 3 57899999999987653
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=4.5e-14 Score=89.01 Aligned_cols=71 Identities=39% Similarity=0.656 Sum_probs=66.8
Q ss_pred EcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 58 IGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 58 V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
|+|||..+++++|+.+|.+||.|..+.+..++.++.++|+|||+|.+.++|..|+..+++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788999999999999999999999999999999998763
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=4e-14 Score=111.62 Aligned_cols=80 Identities=31% Similarity=0.649 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
.++|||+|||..+++++|.++|..||.|..+.+..++.+|.++|||||+|.+.+++..|+..++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999653
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=5.9e-15 Score=108.51 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=93.0
Q ss_pred CCCccCCCCCCCCCCCCCC--CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEEecCCCCCcccEEEEEEcCHH
Q 042948 30 ADFLPLEGGPRRKLPEEKP--LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR-LRIARNKKTGKSKHFGFIEFSDPD 106 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~--~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~ 106 (192)
++.++|+|+|++....+.. ....+.++||+||.+.++|..|.+.|+.||.+.. -.++++..||.++|||||.|.+.+
T Consensus 71 ln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred HHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 3678899999987766532 2345689999999999999999999999999655 488999999999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEcCCCCC
Q 042948 107 VAEVVADAMHGYLLFEHILQVHLIPPEHV 135 (192)
Q Consensus 107 ~a~~al~~lng~~l~g~~i~v~~a~~~~~ 135 (192)
.+.+|+..|||..+++++|.|.++..+..
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999999999999886643
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=8.7e-14 Score=93.49 Aligned_cols=82 Identities=29% Similarity=0.486 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....+.|||.|||+.+|.++..++|+.||.|..|++-..+ ..+|-|||.|++..+|.+|+..|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3456889999999999999999999999999999986554 4579999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
..+..
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 88754
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=120.27 Aligned_cols=83 Identities=28% Similarity=0.480 Sum_probs=79.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
+.|||||+|+++++++|..+|+..|.|.+++++.|+.||+.+||||++|.+.+++..|++.|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 042948 134 HVH 136 (192)
Q Consensus 134 ~~~ 136 (192)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 42
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.6e-14 Score=118.05 Aligned_cols=104 Identities=25% Similarity=0.411 Sum_probs=94.8
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCH
Q 042948 26 RKDTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP 105 (192)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~ 105 (192)
+.+.+++..+.|++++++++...+.. |||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|.+.
T Consensus 53 A~~~~n~~~~~~~~~rim~s~rd~~~----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e 125 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPIRIMWSQRDPSL----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESE 125 (369)
T ss_pred HHHHcCCcccCCcEEEeehhccCCce----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCH
Confidence 44578899999999999998877644 9999999999999999999999999999999997 56 8999 9999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEcCCCCCC
Q 042948 106 DVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136 (192)
Q Consensus 106 ~~a~~al~~lng~~l~g~~i~v~~a~~~~~~ 136 (192)
+.|.+|++.|||..+.|++|.|.....+..+
T Consensus 126 ~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 126 ESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 9999999999999999999999988876543
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=7.9e-14 Score=108.36 Aligned_cols=78 Identities=19% Similarity=0.354 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
.++.++|||||++..+++++|++.|+.||.|.+|++..++ ||+||.|.+.+.|..||..+||..++|+.++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 5678999999999999999999999999999999999885 7999999999999999999999999999999999
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
.+..
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 7754
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=3.8e-13 Score=85.47 Aligned_cols=74 Identities=36% Similarity=0.645 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
+|+|+|||..+++++|+++|..||.|..+.+..++. +.++|+|||+|.+.++|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998874 47789999999999999999999999999999998863
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=3.1e-13 Score=116.71 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 51 NKAAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
+.+++|||+|||+ .+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998874 58999999999999999999999999999999999
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
+...
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.5e-13 Score=111.90 Aligned_cols=95 Identities=22% Similarity=0.353 Sum_probs=80.3
Q ss_pred ccCCCCCCCCCCCCCCC------CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHH
Q 042948 33 LPLEGGPRRKLPEEKPL------VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106 (192)
Q Consensus 33 ~~l~~~~~~~~~~~~~~------~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~ 106 (192)
..|.|..+.+.+.+... ...-..|||.||+.++|++.|+++|.+||.|..|..++| ||||.|.+.+
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~ 304 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAERE 304 (506)
T ss_pred eeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchH
Confidence 34566666555544322 234468999999999999999999999999999988866 9999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEcCCCCC
Q 042948 107 VAEVVADAMHGYLLFEHILQVHLIPPEHV 135 (192)
Q Consensus 107 ~a~~al~~lng~~l~g~~i~v~~a~~~~~ 135 (192)
+|.+|++.+||..|+|..|.|.+|+|...
T Consensus 305 davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHHHHHHhcCceecCceEEEEecCChhh
Confidence 99999999999999999999999998653
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=6e-13 Score=114.92 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCceeCCeeEEEEEc
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM--HGYLLFEHILQVHLI 130 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l--ng~~l~g~~i~v~~a 130 (192)
+++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..| ++..|.|++|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999854 479999999999999999864 788999999999998
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
....
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7653
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.44 E-value=9.1e-13 Score=114.75 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc--CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQF--GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+|||+|||.++++++|+++|+.| |.|..|.++ ++||||+|.+.++|..|++.|||..|+|+.|.|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999998775 35999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.+..
T Consensus 304 Akp~~ 308 (578)
T TIGR01648 304 AKPVD 308 (578)
T ss_pred ccCCC
Confidence 98754
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=8.8e-14 Score=112.21 Aligned_cols=77 Identities=27% Similarity=0.522 Sum_probs=74.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
-|+||||.+.+.+.|+.|+..|..||+|.+|.+.+|+.|++++|||||+|+-++.|+.|++.|||..++|+.|.|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999998873
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.1e-12 Score=101.75 Aligned_cols=81 Identities=23% Similarity=0.438 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.+..|||-||.+++.|.-|+++|++||.|..|++++|..|.+++|||||...+-++|..||..|||..++++.|.|.+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred C
Q 042948 132 P 132 (192)
Q Consensus 132 ~ 132 (192)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 4
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.8e-13 Score=112.17 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
...|.|.|||+.+...+|+.+|+.||.|..|.|++.+ .|+.+|||||+|....+|..|++.+||..|+|++|.|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999877 666679999999999999999999999999999999999988
Q ss_pred CCC
Q 042948 133 EHV 135 (192)
Q Consensus 133 ~~~ 135 (192)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 754
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4e-13 Score=99.25 Aligned_cols=81 Identities=27% Similarity=0.465 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||||||.++.+.+|+++|.+||.|..|.+...+ ...+||||+|++..+|+.||..-+|..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346899999999999999999999999999999886543 24579999999999999999999999999999999998
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
..-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7653
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.1e-13 Score=105.93 Aligned_cols=87 Identities=29% Similarity=0.502 Sum_probs=82.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
..+++|+|||-.||....+.+|..+|-.||.|.+.++..|+.|..+++||||.|++..+++.||.+|||+.|+=++|.|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC
Q 042948 129 LIPPEHV 135 (192)
Q Consensus 129 ~a~~~~~ 135 (192)
+.+|+..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9888653
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=2.5e-12 Score=82.45 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=55.0
Q ss_pred HHHHHHHHh----ccCCeeEEE-EEecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 67 EKEMHAFFS----QFGTIRRLR-IARNKKT--GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 67 e~~l~~~F~----~~G~i~~v~-~~~~~~t--g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+++|+++|+ .||.|..+. ++.++.+ +.++|||||.|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 7777656 889999999999999999999999999999999876
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=9.1e-13 Score=111.00 Aligned_cols=83 Identities=22% Similarity=0.365 Sum_probs=79.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.+.||||++||++++.++|.++|+.+|+|..|.++.++.++.++|||||.|.-.+++++|+...++..++|+.|.|.++.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 042948 132 PEH 134 (192)
Q Consensus 132 ~~~ 134 (192)
.+.
T Consensus 84 ~R~ 86 (678)
T KOG0127|consen 84 KRA 86 (678)
T ss_pred ccc
Confidence 764
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=5e-12 Score=77.39 Aligned_cols=56 Identities=25% Similarity=0.556 Sum_probs=50.6
Q ss_pred HHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 70 MHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 70 l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..++|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987654 589999999999999999999999999999999986
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.5e-12 Score=104.66 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
.++...|||-.|.+.++.++|+-+|+.||.|..|.+++|..||.+..||||+|.+.+++++|.-.|++..|+++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+++-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 87643
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.36 E-value=1.1e-12 Score=110.53 Aligned_cols=78 Identities=27% Similarity=0.592 Sum_probs=74.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
.||||||..++++.+|+.+|..||.|..|.++.|..||.++|||||+|.+.++|..|+..|||+.|-|+.|.|.....
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 399999999999999999999999999999999988999999999999999999999999999999999999976543
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.9e-12 Score=100.67 Aligned_cols=98 Identities=22% Similarity=0.389 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCC-CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 042948 38 GPRRKLPEEKPLVN-KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 38 ~~~~~~~~~~~~~~-~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln 116 (192)
+|+.+++.+.+.+. ++++||||.|...-+|+|++.+|..||.|.+|.+.+.. .|.++||+||.|.+.-+|+.||..||
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhc
Confidence 45555555444333 67899999999999999999999999999999999997 89999999999999999999999999
Q ss_pred Ccee---CCeeEEEEEcCCCCCC
Q 042948 117 GYLL---FEHILQVHLIPPEHVH 136 (192)
Q Consensus 117 g~~l---~g~~i~v~~a~~~~~~ 136 (192)
|..- -...|.|++++.++.+
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred ccccCCCCccceEEEeccchHHH
Confidence 9753 3567999999987654
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=8.7e-12 Score=97.98 Aligned_cols=73 Identities=30% Similarity=0.579 Sum_probs=69.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
..|||||||..+++.+|+.+|++||.|.+|.|+.+ ||||..++...++.||..|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999876 8999999999999999999999999999999998887
Q ss_pred C
Q 042948 134 H 134 (192)
Q Consensus 134 ~ 134 (192)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 4
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=9.6e-12 Score=100.56 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=90.3
Q ss_pred CCCCCccCCCCCCCCCCCCCCC------------CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcc
Q 042948 28 DTADFLPLEGGPRRKLPEEKPL------------VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSK 95 (192)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~------------~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~ 95 (192)
+.+|+..+.|+.+++-..+--+ .....+|||..+.++.+++||+..|+.||+|..|.+.+++..+.++
T Consensus 173 EqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 173 EQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK 252 (544)
T ss_pred HHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcc
Confidence 4678888888877665433211 2245689999999999999999999999999999999999888999
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 96 HFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 96 g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
||||++|.+..+...|+..||-+.++|..|+|..+-.
T Consensus 253 GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 253 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred ceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999999999999999976554
No 62
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.26 E-value=3.2e-12 Score=103.46 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..+++|||+|++.++++.|+++|.+||+|.+|.+++|+.+++++||+||+|.+.+.+..+|. ..-+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999888885 35567899999999888
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 8764
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.26 E-value=2.4e-11 Score=92.48 Aligned_cols=81 Identities=21% Similarity=0.432 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHH----HHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHA----FFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+..+|||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+..|+|+.+.|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999998887 999999998886653 6678999999999999999999999999999999999
Q ss_pred EEcCCCCC
Q 042948 128 HLIPPEHV 135 (192)
Q Consensus 128 ~~a~~~~~ 135 (192)
++|..+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998753
No 64
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.22 E-value=4.4e-11 Score=96.88 Aligned_cols=103 Identities=22% Similarity=0.393 Sum_probs=87.2
Q ss_pred ccCCCCC---CCCCCCCCCCCCC----CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCH
Q 042948 33 LPLEGGP---RRKLPEEKPLVNK----AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP 105 (192)
Q Consensus 33 ~~l~~~~---~~~~~~~~~~~~~----~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~ 105 (192)
+.++|+. .+..++..+.... ...||||+||.++++.+++++|.+||.|..+.++.|..+.+++||+||.|.+.
T Consensus 70 h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e 149 (311)
T KOG4205|consen 70 HKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE 149 (311)
T ss_pred cccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc
Confidence 3455553 3455565554433 45999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEEcCCCCCC
Q 042948 106 DVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136 (192)
Q Consensus 106 ~~a~~al~~lng~~l~g~~i~v~~a~~~~~~ 136 (192)
+.+..++. ...+.|+|+.+.|..|.|+...
T Consensus 150 ~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 150 DSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccceecc-cceeeecCceeeEeeccchhhc
Confidence 99999884 5888999999999999998654
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.21 E-value=6e-11 Score=97.93 Aligned_cols=80 Identities=16% Similarity=0.339 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQ-FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
..+.+||.|||+++.+.+|+++|.. .|+|..|.+..|. +|+++|||.|+|++++.+++|++.||.+.+.|++|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4567999999999999999999975 7999999999997 9999999999999999999999999999999999999875
Q ss_pred CC
Q 042948 131 PP 132 (192)
Q Consensus 131 ~~ 132 (192)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 54
No 66
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=9.4e-11 Score=101.81 Aligned_cols=73 Identities=27% Similarity=0.515 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcc------------CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQF------------GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG 117 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~------------G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng 117 (192)
....++|||||||+.+++++|.++|.++ +.|..+.+ +..+|||||+|.+.++|..|| .|||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3456899999999999999999999975 22333333 345789999999999999999 5999
Q ss_pred ceeCCeeEEEEE
Q 042948 118 YLLFEHILQVHL 129 (192)
Q Consensus 118 ~~l~g~~i~v~~ 129 (192)
..|.|.+|.|..
T Consensus 245 ~~~~g~~l~v~r 256 (509)
T TIGR01642 245 IIYSNVFLKIRR 256 (509)
T ss_pred eEeeCceeEecC
Confidence 999999998864
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.19 E-value=1.5e-10 Score=98.39 Aligned_cols=84 Identities=15% Similarity=0.336 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.-+++|||++|...+...+|+.+|++||.|...+++.+-.+.-.++|+||++.+.++|.+||..||-+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 35679999999999999999999999999999999998777778999999999999999999999999999999999988
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7654
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=3.2e-11 Score=94.87 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=81.4
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHH
Q 042948 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108 (192)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a 108 (192)
-+++..|.|..+.+..+.. ......+++||||.+.++..+|+..|.+||+|.+|.|+++ |+||.|+-.++|
T Consensus 55 NLhgYtLhg~nInVeaSks-Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda 125 (346)
T KOG0109|consen 55 NLHGYTLHGVNINVEASKS-KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDA 125 (346)
T ss_pred hcccceecceEEEEEeccc-cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccch
Confidence 4566667776554433221 1345678999999999999999999999999999999866 899999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEEcCCCC
Q 042948 109 EVVADAMHGYLLFEHILQVHLIPPEH 134 (192)
Q Consensus 109 ~~al~~lng~~l~g~~i~v~~a~~~~ 134 (192)
..|+..|+|.++.|+++.|+++.++-
T Consensus 126 ~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred HHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999988763
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-10 Score=97.29 Aligned_cols=101 Identities=23% Similarity=0.279 Sum_probs=81.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
..|||| +++|+..|.++|+.+|++.++++.+|. | +.|||||.|.+..+|.+||..||...+.|++|++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 899999999999999999999999998 6 9999999999999999999999999999999999998765
Q ss_pred CCCcccccccCCCCCCCchHHHHHHHhhcccccCce
Q 042948 134 HVHPKLWRGFNHGYKPLDWVQVECKRQNKRIEAASI 169 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 169 (192)
... ....+++ +.+.-+...+.+..+|-
T Consensus 76 ~~~--------~~i~nl~-~~~~~~~~~d~f~~~g~ 102 (369)
T KOG0123|consen 76 PSL--------VFIKNLD-ESIDNKSLYDTFSEFGN 102 (369)
T ss_pred Cce--------eeecCCC-cccCcHHHHHHHHhhcC
Confidence 422 2333444 34444444455555553
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=2.6e-11 Score=104.98 Aligned_cols=86 Identities=22% Similarity=0.454 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....+.|+|.|||+..+-.+++.+|..||.+..|+++.....+.++|||||.|-+..+|.+|+.+|.++.|.|+.|.++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 33467899999999999999999999999999999998866778899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.....
T Consensus 690 A~~d~~ 695 (725)
T KOG0110|consen 690 AKSDNT 695 (725)
T ss_pred hccchH
Confidence 987653
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=1.4e-10 Score=101.39 Aligned_cols=101 Identities=15% Similarity=0.327 Sum_probs=86.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
..++|||||+|+..+++.+|..+|+.||+|.+|.++.. +|||||......+|.+|+..|++..+.++.|.|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45689999999999999999999999999999988755 589999999999999999999999999999999999
Q ss_pred CCCCCCcccccc---cCCCCCCCchHHHHHH
Q 042948 131 PPEHVHPKLWRG---FNHGYKPLDWVQVECK 158 (192)
Q Consensus 131 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 158 (192)
.....+. .|.. .+..+..++|..+...
T Consensus 493 ~g~G~ks-e~k~~wD~~lGVt~IP~~kLt~d 522 (894)
T KOG0132|consen 493 VGKGPKS-EYKDYWDVELGVTYIPWEKLTDD 522 (894)
T ss_pred ccCCcch-hhhhhhhcccCeeEeehHhcCHH
Confidence 9887765 2322 3446777888766544
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=6.1e-10 Score=96.62 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTG---KSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg---~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
++|||.||+++++.++|...|..+|.|..+.|...+... .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999888766221 24599999999999999999999999999999999999
Q ss_pred C
Q 042948 131 P 131 (192)
Q Consensus 131 ~ 131 (192)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.06 E-value=9.8e-10 Score=85.96 Aligned_cols=84 Identities=17% Similarity=0.379 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
+.....|+|.|||+.+++++|+++|..||.+..+.+..++ +|.+.|.|-|.|...++|..|++.+||..++|++|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 4445789999999999999999999999999999999998 899999999999999999999999999999999999988
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76654
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=9e-10 Score=88.60 Aligned_cols=78 Identities=26% Similarity=0.444 Sum_probs=68.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH-HhCCceeCCeeEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD-AMHGYLLFEHILQV 127 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~lng~~l~g~~i~v 127 (192)
.+....+|||++|-..+++.+|+++|.+||+|..+.+.... ++|||+|.+..+|+.|.. .+|...|+|..|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34456799999999999999999999999999999887553 599999999999988874 55656689999999
Q ss_pred EEcCC
Q 042948 128 HLIPP 132 (192)
Q Consensus 128 ~~a~~ 132 (192)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99988
No 75
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.98 E-value=8.4e-10 Score=85.44 Aligned_cols=91 Identities=20% Similarity=0.353 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 042948 39 PRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY 118 (192)
Q Consensus 39 ~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~ 118 (192)
.....+.......++..||.|-|...++.+.|-..|.+|-.....++++++.||+++||+||.|.+..++..|+..|||.
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc
Confidence 33344444556677889999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eeCCeeEEEEE
Q 042948 119 LLFEHILQVHL 129 (192)
Q Consensus 119 ~l~g~~i~v~~ 129 (192)
.++.++|.++-
T Consensus 256 yVgsrpiklRk 266 (290)
T KOG0226|consen 256 YVGSRPIKLRK 266 (290)
T ss_pred ccccchhHhhh
Confidence 99999886553
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.98 E-value=6.9e-09 Score=83.55 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR--------RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE 122 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g 122 (192)
.....|||+|||.++|.+++.++|++||.|. .|++.++. .|..+|=|.+.|...+++..|+..|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999875 37888887 69999999999999999999999999999999
Q ss_pred eeEEEEEcCCC
Q 042948 123 HILQVHLIPPE 133 (192)
Q Consensus 123 ~~i~v~~a~~~ 133 (192)
+.|+|..|+=.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999987644
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.96 E-value=5.8e-09 Score=90.68 Aligned_cols=86 Identities=17% Similarity=0.313 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT---GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
.-.+..+++||+||++.+++..|...|+.||+|..+++++.+.. ...+-||||.|-+..+|++|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 34667789999999999999999999999999999999987632 345679999999999999999999999999999
Q ss_pred EEEEEcCCC
Q 042948 125 LQVHLIPPE 133 (192)
Q Consensus 125 i~v~~a~~~ 133 (192)
+.+.|+++-
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 999988543
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=2.9e-09 Score=83.27 Aligned_cols=85 Identities=20% Similarity=0.355 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
....+...+||||+.+.++.++++..|..||.|..+.+..++.+|.++||+||+|.+.+.+..++. |||..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345677899999999999999999999999999999999999888999999999999999999997 9999999999999
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 876654
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.86 E-value=6.8e-09 Score=85.98 Aligned_cols=76 Identities=26% Similarity=0.333 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....|+|||.|||.++|+..|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|||..++|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35678999999999999999999999999999988843 567776 8999999999999999999999999999987
Q ss_pred c
Q 042948 130 I 130 (192)
Q Consensus 130 a 130 (192)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.85 E-value=9.6e-09 Score=86.37 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
.....+|||.|||.++++.+|+++|.+||.|....|......++..+||||+|.+.+.++.||.+ +-..|+++++.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34556799999999999999999999999999887766542344449999999999999999976 67788999999987
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
-.+.
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 6654
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.81 E-value=5.1e-08 Score=74.45 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEec-CCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC---CeeEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN-KKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF---EHILQ 126 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~-~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~---g~~i~ 126 (192)
..-+||||++||.++...+|..+|..|-.-..+.+... +....++-+||++|.+.+.|..|+..|||..++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 44689999999999999999999999866555555433 222235579999999999999999999999984 88999
Q ss_pred EEEcCCCCC
Q 042948 127 VHLIPPEHV 135 (192)
Q Consensus 127 v~~a~~~~~ 135 (192)
++++++...
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999887653
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.79 E-value=7.6e-08 Score=65.15 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC----CeeEEE
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQ--FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF----EHILQV 127 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~----g~~i~v 127 (192)
+||.|.|||...+.++|.+++.. .|....+.++.|..++-+.|||||.|.+.+.+..-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988875 367788899999889999999999999999999999999999874 556677
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 776543
No 83
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.78 E-value=9.7e-10 Score=93.01 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
++.+.+++|+..|+..+++.+|.++|+.+|.|.+|.++.|+.++.++|.|||+|.+.+....|| .|.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3556789999999999999999999999999999999999999999999999999999999999 799999999999998
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
.....+
T Consensus 254 ~sEaek 259 (549)
T KOG0147|consen 254 LSEAEK 259 (549)
T ss_pred ccHHHH
Confidence 866554
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=8.5e-09 Score=79.16 Aligned_cols=72 Identities=31% Similarity=0.546 Sum_probs=65.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
..+|||+||+.+.+.+|+.+|..||.+.++.+. .||+||+|.+..+|..|+..||+..|.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999998774 358999999999999999999999999999999998864
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=9.4e-09 Score=87.28 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=64.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
....++|+|-|||.++++++|+.+|+.||+|..|+.-. ..+|.+||+|.+..+|++|+++||+..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999999999976643 4578999999999999999999999999999887
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=8.1e-09 Score=78.51 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
+..++|||+|+...++|+-|.++|-+-|+|..|.|+.++ .+..+ ||||.|.++-+..-|++.+||..+.+..+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 346899999999999999999999999999999998887 56666 9999999999999999999999999998888775
Q ss_pred CCC
Q 042948 131 PPE 133 (192)
Q Consensus 131 ~~~ 133 (192)
...
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 443
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=6.7e-08 Score=82.52 Aligned_cols=88 Identities=23% Similarity=0.519 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.....+||++||...++.++.++...||.+....++.+..+|.++||||.+|-+......|+..|||..+++..|.|+.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcc
Q 042948 131 PPEHVHPK 138 (192)
Q Consensus 131 ~~~~~~~~ 138 (192)
-.......
T Consensus 367 ~~g~~~~~ 374 (500)
T KOG0120|consen 367 IVGASNAN 374 (500)
T ss_pred hccchhcc
Confidence 77654333
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.37 E-value=3.3e-06 Score=71.18 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..-.|-+.+||+++|+++|.++|+.+ .|..+.+.+. +|+..|-|||+|.+.++++.|++ .+-..+..+-|+|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34567889999999999999999999 4667555544 79999999999999999999996 57778899999998876
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
+...
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 6543
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.34 E-value=5.3e-06 Score=68.57 Aligned_cols=78 Identities=24% Similarity=0.423 Sum_probs=69.9
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 53 AAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 53 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
...|.|.||.. .+|.+.|.-+|+.||.|.+|.|..++. --|.|+|.+...|+-|+..|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888988864 589999999999999999999998863 469999999999999999999999999999999987
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
-...
T Consensus 372 H~~v 375 (492)
T KOG1190|consen 372 HTNV 375 (492)
T ss_pred Cccc
Confidence 6544
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.25 E-value=3.4e-06 Score=71.07 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR-LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
....|-+.+||+.|++++|.++|+..-.+.. +.++.+. .+++.|-|||+|.+.+.|+.||.. |...|+.+-|+|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4678999999999999999999998754444 5677776 678999999999999999999964 777889999988655
Q ss_pred C
Q 042948 131 P 131 (192)
Q Consensus 131 ~ 131 (192)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 91
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.25 E-value=6.7e-07 Score=69.57 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCC--------CCccc----EEEEEEcCHHHHHHHHHHhCCce
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT--------GKSKH----FGFIEFSDPDVAEVVADAMHGYL 119 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t--------g~~~g----~afV~f~~~~~a~~al~~lng~~ 119 (192)
....||+++||+.+....|+++|++||.|-.|.+.....+ |...+ -|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999988766544 22222 26799999999999999999999
Q ss_pred eCCee
Q 042948 120 LFEHI 124 (192)
Q Consensus 120 l~g~~ 124 (192)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.23 E-value=7.1e-06 Score=62.90 Aligned_cols=79 Identities=18% Similarity=0.408 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeeEE
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF-EHILQ 126 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~-g~~i~ 126 (192)
++.++...+|+.|||..++.+.+..+|.+|.....++++... .+.|||+|.+...+..|...++|..|- .+.+.
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 345667899999999999999999999999999999998765 579999999999999999999999885 77777
Q ss_pred EEEcC
Q 042948 127 VHLIP 131 (192)
Q Consensus 127 v~~a~ 131 (192)
|.++.
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 77654
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.17 E-value=1.4e-05 Score=52.19 Aligned_cols=70 Identities=17% Similarity=0.348 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCcHHHH----HHHHhccCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 54 AVLYIGRIPRWFYEKEM----HAFFSQFGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l----~~~F~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
..|||.|||.+.+...| ++++..||. |..| + .+.|+|.|.+.+.|.+|.+.|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999887655 566667764 6554 2 2579999999999999999999999999999999
Q ss_pred EcCCC
Q 042948 129 LIPPE 133 (192)
Q Consensus 129 ~a~~~ 133 (192)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.14 E-value=2.5e-06 Score=69.35 Aligned_cols=85 Identities=21% Similarity=0.372 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR--------RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF 121 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~ 121 (192)
.....+|||-+||..+++.+|.++|.++|.|. .|.+-+++.|+..+|-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999999874 4678888899999999999999999999999999999999
Q ss_pred CeeEEEEEcCCCC
Q 042948 122 EHILQVHLIPPEH 134 (192)
Q Consensus 122 g~~i~v~~a~~~~ 134 (192)
+.+|.|-++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999988877654
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=1.2e-05 Score=65.17 Aligned_cols=80 Identities=20% Similarity=0.406 Sum_probs=62.0
Q ss_pred cEEEEcCCCCCCcHHHH------HHHHhccCCeeEEEEEecCCC-CCccc--EEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 54 AVLYIGRIPRWFYEKEM------HAFFSQFGTIRRLRIARNKKT-GKSKH--FGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l------~~~F~~~G~i~~v~~~~~~~t-g~~~g--~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
.-+||-+||+.+..+++ .++|++||.|..|.+-+.-.+ ...-+ -.||+|.+.++|.+||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999988776652 589999999988876544211 11112 2499999999999999999999999999
Q ss_pred EEEEEcCCC
Q 042948 125 LQVHLIPPE 133 (192)
Q Consensus 125 i~v~~a~~~ 133 (192)
|.+.+...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999886544
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.10 E-value=2.1e-06 Score=69.38 Aligned_cols=84 Identities=15% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCcEEE-EcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 51 NKAAVLY-IGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~-V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++| |++|+..++.++|+..|..+|.|..++++.+..++.+.|||||.|.....+..++.. +...+.++++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445566 999999999999999999999999999999999999999999999999999999876 78889999999998
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 887643
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=9.5e-06 Score=55.96 Aligned_cols=73 Identities=15% Similarity=0.341 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-----eeCCeeEEE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY-----LLFEHILQV 127 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~-----~l~g~~i~v 127 (192)
++.|+|.+++..++-++|++.|++||.|..|.+.... .-|||.|.+.+.|+.|+..+.-. .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678999999999999999999999999999887653 27999999999999998766544 455655555
Q ss_pred EEcC
Q 042948 128 HLIP 131 (192)
Q Consensus 128 ~~a~ 131 (192)
.+-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 5443
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.02 E-value=6.7e-06 Score=63.04 Aligned_cols=63 Identities=22% Similarity=0.411 Sum_probs=52.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
.+|||.||..+++|++|+.+|+.|.....++|... .| -..||++|.+.+.|..|+..|+|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 48999999999999999999999976655555422 23 35899999999999999999999876
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.95 E-value=7.2e-06 Score=66.62 Aligned_cols=77 Identities=10% Similarity=0.229 Sum_probs=68.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCC--eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGT--IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
..+|||||-+++|.++|.+.+...|- +.++++..++.+|.++|||.|...+.....+.++.|-...|.|+.-.|.-.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 46999999999999999999988774 788899999999999999999999999999999999999999887666543
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=8e-05 Score=64.06 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCcH------HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee-CCe
Q 042948 51 NKAAVLYIGRIPRWFYE------KEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL-FEH 123 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te------~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l-~g~ 123 (192)
.-...|+|.|+|.--.. .-|..+|+++|.+..+.++.+..+| ++||.|++|.+..+|+.|++.|||..| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45578999999874332 3457899999999999999888544 999999999999999999999999988 477
Q ss_pred eEEEEEc
Q 042948 124 ILQVHLI 130 (192)
Q Consensus 124 ~i~v~~a 130 (192)
...|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777653
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=2.5e-05 Score=60.20 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=64.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....+.+.|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|...+++..|+..|+|..+.|+.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455678999999999999999999999999844333 356899999999999999999999999999999955
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
....
T Consensus 168 ~~~d 171 (216)
T KOG0106|consen 168 NSRD 171 (216)
T ss_pred cCcc
Confidence 4433
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00038 Score=59.33 Aligned_cols=66 Identities=21% Similarity=0.425 Sum_probs=49.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCC-CC--Cccc---EEEEEEcCHHHHHHHHHHhC
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKK-TG--KSKH---FGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~-tg--~~~g---~afV~f~~~~~a~~al~~ln 116 (192)
..-++.||||+||++++|+.|...|..||.+ .|.++.... .+ .++| |+|+.|+++..+..-+.++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 4567899999999999999999999999986 344442111 11 2456 99999999988877665544
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.69 E-value=0.00018 Score=63.29 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCee-EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIR-RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..+.|-+.|+|.+++-+||-++|..|-.+- +|.+..+ ..|...|-|-|.|++.++|.+|...|++..|..+.+.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345888999999999999999999997654 4444444 4899999999999999999999999999999999988765
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00015 Score=43.59 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=41.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 112 (192)
+.|-|.+.+.+..+. +...|.+||+|..+.+... ..+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467888999877654 5558899999999888622 248999999999999985
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.64 E-value=0.00016 Score=62.22 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=55.7
Q ss_pred HHHHHHhccCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCCCC
Q 042948 69 EMHAFFSQFGTIRRLRIARNKKT---GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHV 135 (192)
Q Consensus 69 ~l~~~F~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~~~ 135 (192)
+++.-++.||.|..|.++++-.. ....|-.||+|.+.++++.|+++|+|..+.|+.+.+.|.....-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 44566678999999999888222 33567889999999999999999999999999999999876543
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.0005 Score=46.86 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEE-EEecC------CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLR-IARNK------KTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-~~~~~------~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
..+.|.|-+.|+.. ...|.+.|++||.|.+.. +.++. .......+..|.|++..+|.+||. .||..++|..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 34568888999984 566778899999987764 10000 001124588999999999999996 6999998764
Q ss_pred -EEEEEcC
Q 042948 125 -LQVHLIP 131 (192)
Q Consensus 125 -i~v~~a~ 131 (192)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4566653
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.58 E-value=0.00087 Score=55.24 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 49 LVNKAAVLYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
...+++.+.|-+|... +.-+.|..+|..||.|..|++++.+ .|-|.|+..+....++|+..||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3567889999999875 5667899999999999999999886 468999999999999999999999999999999
Q ss_pred EEcCCCCC
Q 042948 128 HLIPPEHV 135 (192)
Q Consensus 128 ~~a~~~~~ 135 (192)
.++...-.
T Consensus 358 ~~SkQ~~v 365 (494)
T KOG1456|consen 358 CVSKQNFV 365 (494)
T ss_pred eecccccc
Confidence 99876543
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.56 E-value=0.00046 Score=56.22 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCC----CCc-------HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 52 KAAVLYIGRIPR----WFY-------EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 52 ~~~~l~V~nLp~----~~t-------e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
..++|.+.|+=. ..+ .++|.+-..+||.|..|.+.-. .+.|.+-|.|.+.+.|..||+.|+|..+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 457888888611 122 3566677889999999977633 3578999999999999999999999999
Q ss_pred CCeeEEEEEcCCCC
Q 042948 121 FEHILQVHLIPPEH 134 (192)
Q Consensus 121 ~g~~i~v~~a~~~~ 134 (192)
+|+.|...+...+.
T Consensus 340 dgRql~A~i~DG~t 353 (382)
T KOG1548|consen 340 DGRQLTASIWDGKT 353 (382)
T ss_pred cceEEEEEEeCCcc
Confidence 99999998876653
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00032 Score=59.77 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=60.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHh-ccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFS-QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 114 (192)
+-+..+|||||+||.-++-.+|-.+|. -||.|..+-|-.|+.-+.++|-|=|+|.+..+-.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445678999999999999999999999 599999999999977889999999999999999999863
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.52 E-value=0.00012 Score=61.03 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEec---CCCC--C--------cccEEEEEEcCHHHHH
Q 042948 43 LPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN---KKTG--K--------SKHFGFIEFSDPDVAE 109 (192)
Q Consensus 43 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~---~~tg--~--------~~g~afV~f~~~~~a~ 109 (192)
.+..+.++..+++|.+-|||.+-.-+-|.++|+.+|.|..|+|+.. +.++ . .+-+|+|+|...+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 3445556678999999999999999999999999999999999766 3222 1 1457999999999999
Q ss_pred HHHHHhCCce
Q 042948 110 VVADAMHGYL 119 (192)
Q Consensus 110 ~al~~lng~~ 119 (192)
+|.+.||...
T Consensus 301 KA~e~~~~e~ 310 (484)
T KOG1855|consen 301 KARELLNPEQ 310 (484)
T ss_pred HHHHhhchhh
Confidence 9998876543
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.49 E-value=0.0002 Score=59.10 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCC-eeE--EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGT-IRR--LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~--v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...|-+.+||+..+.++|.++|..|.. |.. |+++.+. .|+..|-|||+|.+.+.|..|....|.....++.|+|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 457889999999999999999998864 444 7888875 899999999999999999999998888877899998876
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+....
T Consensus 359 ~S~ee 363 (508)
T KOG1365|consen 359 CSVEE 363 (508)
T ss_pred ccHHH
Confidence 65543
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.42 E-value=0.00049 Score=57.25 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-eeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE-HILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g-~~i~v~~ 129 (192)
++..++.++|+|.+++|++|+..|..-|........ -++.+-++++.+.+.+.|-.|+..+|++.+++ ..|+|.+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 456689999999999999999999998875444322 22334599999999999999999999999864 4889988
Q ss_pred cCC
Q 042948 130 IPP 132 (192)
Q Consensus 130 a~~ 132 (192)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 764
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.41 E-value=0.0011 Score=48.07 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCCCcEEEEcCCCC------CCcH---HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 50 VNKAAVLYIGRIPR------WFYE---KEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 50 ~~~~~~l~V~nLp~------~~te---~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
.++..+|.|.=+.+ ...+ .+|.+.|..||.+.-+++..+ .-+|+|.+-+.|.+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34566777764441 2222 367788999999888888754 47999999999999994 899999
Q ss_pred CCeeEEEEEcCCC
Q 042948 121 FEHILQVHLIPPE 133 (192)
Q Consensus 121 ~g~~i~v~~a~~~ 133 (192)
+|+.|.|++..|.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999987664
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=2e-05 Score=70.42 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE 122 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g 122 (192)
..++||+||++.+.+.+|...|..+|.+..+++......++.+|+||+.|...+.+.+|+....+..++.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 3589999999999999999999999998888777666688999999999999999999997655554443
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.35 E-value=0.00011 Score=57.46 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHHh-ccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 69 EMHAFFS-QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 69 ~l~~~F~-~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
+|...|+ +||+|..+.+..+. .-...|-+||.|...++|++|++.|||..+.|++|.+.++.-.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3444445 89999998776554 3446789999999999999999999999999999999987643
No 116
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.14 E-value=0.0034 Score=41.02 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG 117 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng 117 (192)
.+..||+ +|......||.++|+.||.| .|.++.|- -|||...+.+.+..++..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4667776 99999999999999999998 66676664 699999999999999887653
No 117
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.13 E-value=0.00068 Score=58.80 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee---CCeeE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQ-FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL---FEHIL 125 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l---~g~~i 125 (192)
...+..|||.||-.-+|.-+|+.+++. +|.|... ..|+ .+..|||.|.+.++|-....+|||..+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345678999999999999999999995 6667666 2332 356899999999999999999999987 78888
Q ss_pred EEEEcCCC
Q 042948 126 QVHLIPPE 133 (192)
Q Consensus 126 ~v~~a~~~ 133 (192)
.+.|....
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 88887654
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.00 E-value=0.00033 Score=62.88 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
...+||.|+|+..|.++++.++..+|.+.+..++..+ .|+++|.+||.|.+..++.+++.......+.-..+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4579999999999999999999999999999988887 899999999999999999999988888888777788888777
Q ss_pred CC
Q 042948 133 EH 134 (192)
Q Consensus 133 ~~ 134 (192)
..
T Consensus 815 ~~ 816 (881)
T KOG0128|consen 815 ER 816 (881)
T ss_pred cc
Confidence 44
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.99 E-value=0.00035 Score=63.13 Aligned_cols=101 Identities=16% Similarity=0.286 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++||+|||+..+++.+|+..|..+|.|..|.|-... -+..--|+||.|.+...+..|...+.+..|....+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4567899999999999999999999999999999887664 333445899999999999999999999998777777777
Q ss_pred cCCC-CCCcccccccCCCCCCCc
Q 042948 130 IPPE-HVHPKLWRGFNHGYKPLD 151 (192)
Q Consensus 130 a~~~-~~~~~~~~~~~~~~~~~~ 151 (192)
..+. .....+|.+.-....+..
T Consensus 448 G~~kst~ttr~~sgglg~w~p~~ 470 (975)
T KOG0112|consen 448 GQPKSTPTTRLQSGGLGPWSPVS 470 (975)
T ss_pred cccccccceeeccCCCCCCChHH
Confidence 7643 234567776655555443
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.87 E-value=0.0027 Score=57.56 Aligned_cols=78 Identities=24% Similarity=0.449 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC--eeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE--HILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g--~~i~v~ 128 (192)
...+.+|+++|+.++....|...|..||.|..|.+- .| .-|+||.|.+...++.|+..|.|..|+| +.+.|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cC--CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 346789999999999999999999999999887653 22 3499999999999999999999999964 668888
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.+..
T Consensus 527 la~~~~ 532 (975)
T KOG0112|consen 527 LASPPG 532 (975)
T ss_pred cccCCC
Confidence 877654
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.85 E-value=0.0012 Score=54.67 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=54.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcc----CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQF----GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
.-.|-..+||+++++.++.++|..- |....|.++..+ +|+..|-|||.|..+++|+.||.. |...++-+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 3467778999999999999999632 345567666665 789999999999999999999864 4444444443
No 122
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.85 E-value=0.0024 Score=52.96 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=64.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT---GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...|.|.||.++++.++++.+|...|.|..+.|+..... ....-.|||.|.+...+..|- .|.++.+-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 358999999999999999999999999999988764322 223568999999998888775 6888888888887776
Q ss_pred cCC
Q 042948 130 IPP 132 (192)
Q Consensus 130 a~~ 132 (192)
+..
T Consensus 86 ~~~ 88 (479)
T KOG4676|consen 86 YGD 88 (479)
T ss_pred cCC
Confidence 543
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.001 Score=52.22 Aligned_cols=95 Identities=20% Similarity=0.137 Sum_probs=71.8
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHH
Q 042948 28 DTADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDV 107 (192)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~ 107 (192)
.++|++..-+++.+....- . ..|||.||+..++-+.+...|+.||+|....++.|- .+++.+-++|.|...-.
T Consensus 12 ~eLd~~~~~~~~lr~rfa~-----~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~ 84 (275)
T KOG0115|consen 12 RELDGRFPKGRSLRVRFAM-----H-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPN 84 (275)
T ss_pred HhcCCCCCCCCceEEEeec-----c-ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchh
Confidence 3566666666655543321 1 679999999999999999999999999887777775 68888899999999999
Q ss_pred HHHHHHHhCCc----eeCCeeEEEEE
Q 042948 108 AEVVADAMHGY----LLFEHILQVHL 129 (192)
Q Consensus 108 a~~al~~lng~----~l~g~~i~v~~ 129 (192)
+..|+..++.. ...+.+..|..
T Consensus 85 a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 85 ARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HHHHHHHhccCccccCCCCCccCCCh
Confidence 99998877432 23555555543
No 124
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=0.0077 Score=45.27 Aligned_cols=71 Identities=7% Similarity=0.127 Sum_probs=59.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee--CCeeEEEEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL--FEHILQVHL 129 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l--~g~~i~v~~ 129 (192)
....|.|++||++.++.+|++....-|.|....+.+| |++.|+|...++.+-|+..|....+ .|....+.+
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 3467899999999999999999999999998888777 3899999999999999999988766 344433333
No 125
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.74 E-value=0.0069 Score=48.56 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred HHHHHHHhccCCeeEEEEEecCCCCCcc-cEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 68 KEMHAFFSQFGTIRRLRIARNKKTGKSK-HFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 68 ~~l~~~F~~~G~i~~v~~~~~~~tg~~~-g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
.++.+-..+||.|..|-|...+...... ---||+|...++|.+|+-.|||..|+|+.+..++..-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 4566778899999999887776433322 23699999999999999999999999999988887643
No 126
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.73 E-value=0.014 Score=48.40 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=62.8
Q ss_pred CCcEEEEc--CCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC--eeEEE
Q 042948 52 KAAVLYIG--RIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE--HILQV 127 (192)
Q Consensus 52 ~~~~l~V~--nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g--~~i~v 127 (192)
....|.+. |--+.+|.+.|..+....|.|.+|.|... +|- -|.|+|++.+.|++|-.+|||..|.. -.|.|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34455444 44567889999999999999999988765 443 68999999999999999999998843 45778
Q ss_pred EEcCCCCC
Q 042948 128 HLIPPEHV 135 (192)
Q Consensus 128 ~~a~~~~~ 135 (192)
++|+|.+.
T Consensus 194 eyAkP~rl 201 (494)
T KOG1456|consen 194 EYAKPTRL 201 (494)
T ss_pred EecCccee
Confidence 88888753
No 127
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.62 E-value=0.019 Score=35.51 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcc---CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQF---GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 115 (192)
...|+|.|+.. ++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45799999865 7788999999998 235688898886 5889999999999999764
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.53 E-value=0.0027 Score=53.23 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=58.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc-eeCCeeEEEEEcCCC
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY-LLFEHILQVHLIPPE 133 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~-~l~g~~i~v~~a~~~ 133 (192)
.+|++||.+.++..+|+.+|...-.-..-.++. -.||+||.+.+...|.+|++.++|. .+.|.++.|..+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999997541111111111 1479999999999999999999996 479999999988776
Q ss_pred CC
Q 042948 134 HV 135 (192)
Q Consensus 134 ~~ 135 (192)
+.
T Consensus 77 kq 78 (584)
T KOG2193|consen 77 KQ 78 (584)
T ss_pred HH
Confidence 53
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.47 E-value=0.001 Score=54.03 Aligned_cols=80 Identities=15% Similarity=0.357 Sum_probs=61.4
Q ss_pred cEEEEcCCCCCCcHHHH---HHHHhccCCeeEEEEEecCC--CCC-cccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 54 AVLYIGRIPRWFYEKEM---HAFFSQFGTIRRLRIARNKK--TGK-SKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l---~~~F~~~G~i~~v~~~~~~~--tg~-~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
.-+||-+|+.....+.+ .+.|.+||.|..|.+..+.. .+. ...-+||+|...++|..||...+|..++|+.+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888877654444 47899999999998887662 111 1233899999999999999999999999998777
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 766654
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.40 E-value=0.072 Score=36.96 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=47.8
Q ss_pred cEEEE-cCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 042948 54 AVLYI-GRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF 121 (192)
Q Consensus 54 ~~l~V-~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~ 121 (192)
..+.| ...|+.++.++|..+.+.+- .|..++++++. ...+-.+.+.|.+.+.|..-...+||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44444 44555555566665555553 47888998874 235668899999999999999999999875
No 131
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.29 E-value=0.0062 Score=53.64 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
++.+...++||+|+...+..+-+..+...+|-|..+.... |||+.|........|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4566778999999999999999999999999887654332 8999999999999999999999999988877
Q ss_pred EE
Q 042948 128 HL 129 (192)
Q Consensus 128 ~~ 129 (192)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 65
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.19 E-value=0.004 Score=55.22 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR-LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+...+..|||-.||..+++.++-++|...-.|.+ |.|...+ ++..++.|||.|...+.+..|+..-+.+.++.+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3456779999999999999999999998767766 7777766 8888999999999988888888766777778888888
Q ss_pred EEcC
Q 042948 128 HLIP 131 (192)
Q Consensus 128 ~~a~ 131 (192)
+-..
T Consensus 509 ~si~ 512 (944)
T KOG4307|consen 509 DSIA 512 (944)
T ss_pred echh
Confidence 7543
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.94 E-value=0.062 Score=38.83 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=55.9
Q ss_pred CCCCcEEEEcCCCCCCcH----HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 50 VNKAAVLYIGRIPRWFYE----KEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te----~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
+++-.+|.|.-|..++.. ..+...++.||+|.+|.+.. +.-|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 555678889877766542 34556678899999987642 34799999999999999998876 4567778
Q ss_pred EEEEcC
Q 042948 126 QVHLIP 131 (192)
Q Consensus 126 ~v~~a~ 131 (192)
.|.|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 877754
No 134
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.89 E-value=0.013 Score=44.23 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc-cCCe---eEEEEEecCC-CC-CcccEEEEEEcCHHHHHHHHHHhCCceeC---
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQ-FGTI---RRLRIARNKK-TG-KSKHFGFIEFSDPDVAEVVADAMHGYLLF--- 121 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~~~~~~~-tg-~~~g~afV~f~~~~~a~~al~~lng~~l~--- 121 (192)
.....|.|.+||+++|++++.+.+.. ++.- ..+.-..... .. ....-|||.|.+.+++..-...++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999886666 5554 3333222221 11 13456999999999999999999998872
Q ss_pred C--eeEEEEEcCC
Q 042948 122 E--HILQVHLIPP 132 (192)
Q Consensus 122 g--~~i~v~~a~~ 132 (192)
| .+..|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 2345666654
No 135
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.16 Score=41.15 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=53.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee-EEEEEcC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI-LQVHLIP 131 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~-i~v~~a~ 131 (192)
..-|-|-++|+.-. ..|...|.+||.|....... +| .+-+|.|.+.-+|++||. .||..|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 45677778888654 45677899999997765441 33 489999999999999995 6999997754 4555544
Q ss_pred CCC
Q 042948 132 PEH 134 (192)
Q Consensus 132 ~~~ 134 (192)
.+.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 443
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.77 E-value=0.25 Score=37.44 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CceeCCeeEEEEEcCCCC
Q 042948 67 EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH--GYLLFEHILQVHLIPPEH 134 (192)
Q Consensus 67 e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln--g~~l~g~~i~v~~a~~~~ 134 (192)
...|+.+|..|+.+..+..... -+-..|.|.+.+.|..|...|+ +..+.|..+.|.++.+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4789999999999877766543 2357899999999999999999 999999999999886543
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.76 E-value=0.079 Score=43.01 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...+++|++++...+.+.+...++..+|.+..+.+........++|++++.|...+.+..|+.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999988899999998888877776668889999999999999999999754444666666555444
Q ss_pred CC
Q 042948 131 PP 132 (192)
Q Consensus 131 ~~ 132 (192)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 33
No 138
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.72 E-value=0.045 Score=46.68 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=57.4
Q ss_pred cEEEEcCCCCCC-cHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 54 AVLYIGRIPRWF-YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 54 ~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
+.+-+.-.|... +.++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|. ..++..|+++.|.|.|..+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 344444445543 568999999999999999875442 36899999999997776 4699999999999999888
Q ss_pred CC
Q 042948 133 EH 134 (192)
Q Consensus 133 ~~ 134 (192)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.67 E-value=0.38 Score=30.14 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 64 WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 64 ~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
.++-++++..+..|+- .. +..++ || =||.|.+..+|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4577899999999963 23 34454 33 389999999999999999999887766543
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.49 E-value=0.74 Score=29.31 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHHhccCC-----eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 63 RWFYEKEMHAFFSQFGT-----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 63 ~~~te~~l~~~F~~~G~-----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
..++..+|-.++...+. |-.|.+..+ |+||+.... .+..++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45778888888876643 556666543 889987754 788889999999999999999865
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.27 E-value=0.17 Score=43.93 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=42.3
Q ss_pred cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee---C-CeeEEEEEcCCC
Q 042948 77 FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL---F-EHILQVHLIPPE 133 (192)
Q Consensus 77 ~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l---~-g~~i~v~~a~~~ 133 (192)
.|.=..+.++.|-.+....|||||.|.+.+.+..+.+++||..+ + .+.+.+.||.-.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 34445566777766667789999999999999999999999876 3 333455555543
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.05 E-value=0.21 Score=43.60 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc--cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeeE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQ--FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG--YLLFEHIL 125 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng--~~l~g~~i 125 (192)
....|.|.+.-||.++..++++.+|.. |-.+.+|.+.-+. -=||+|++..+|+.|.+.|.. .+|.|++|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345678899999999999999999975 6677788776553 248999999999999887765 35778877
Q ss_pred EEEE
Q 042948 126 QVHL 129 (192)
Q Consensus 126 ~v~~ 129 (192)
..++
T Consensus 245 mARI 248 (684)
T KOG2591|consen 245 MARI 248 (684)
T ss_pred hhhh
Confidence 6554
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=92.77 E-value=0.024 Score=43.74 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=63.9
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCcEEEEcC----CCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 29 TADFLPLEGGPRRKLPEEKPLVNKAAVLYIGR----IPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
-+||..|++.++. .+++.|+ |...++++.+...|++-|++..+++.++. .|+.+.++|+.+..
T Consensus 68 L~ng~~l~~~e~q------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 68 LENGDDLEEDEEQ------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQR 134 (267)
T ss_pred hcccchhccchhh------------cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhh
Confidence 4566666666654 4556666 77789999999999999999999999987 58899999999988
Q ss_pred HHHHHHHHHHhCCceeC
Q 042948 105 PDVAEVVADAMHGYLLF 121 (192)
Q Consensus 105 ~~~a~~al~~lng~~l~ 121 (192)
......++....+..+-
T Consensus 135 ~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 135 LCAVPFALDLYQGLELF 151 (267)
T ss_pred hhcCcHHhhhhcccCcC
Confidence 88888888777765543
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.67 E-value=0.64 Score=39.69 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE 122 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g 122 (192)
+..|+|-.+|..++..||-.|...+- .|..+++++|.. ..+=...|.|.+..+|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999988764 489999999652 234467899999999999999999998753
No 145
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.36 E-value=0.12 Score=47.21 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=62.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee--CCeeEEEEEcCC
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL--FEHILQVHLIPP 132 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l--~g~~i~v~~a~~ 132 (192)
+.++-|.+-..+...|..+|+.||.|.+.+..++- ..|.|.|.+.+.|-.|+.+|+|..+ -|-+.+|-+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34444556677888999999999999999887775 3799999999999999999999886 688889998887
Q ss_pred CCCC
Q 042948 133 EHVH 136 (192)
Q Consensus 133 ~~~~ 136 (192)
-...
T Consensus 374 ~~~~ 377 (1007)
T KOG4574|consen 374 LPMY 377 (1007)
T ss_pred cccc
Confidence 6543
No 146
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.68 E-value=1.8 Score=34.99 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=40.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCH-------HHHHHHHHHhC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDP-------DVAEVVADAMH 116 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~-------~~a~~al~~ln 116 (192)
.-||++|||.++.-.+|+..+...|.+ ...+.+. -+.|-||+.|.+. .++.+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 469999999999999999999887653 2233222 1467899999663 44455554443
No 147
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.47 E-value=0.4 Score=38.54 Aligned_cols=69 Identities=28% Similarity=0.444 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCCC------------CcHHHHHHHHhccCCeeEEEEEec-----CCCCCc-----ccEEE---------E
Q 042948 52 KAAVLYIGRIPRW------------FYEKEMHAFFSQFGTIRRLRIARN-----KKTGKS-----KHFGF---------I 100 (192)
Q Consensus 52 ~~~~l~V~nLp~~------------~te~~l~~~F~~~G~i~~v~~~~~-----~~tg~~-----~g~af---------V 100 (192)
.+-+||+.+||-. .++.-|...|..||.|..|.++.- ..+|+. .||+| |
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457888877742 467889999999999988877532 234443 33332 4
Q ss_pred EEcCHHHHHHHHHHhCCcee
Q 042948 101 EFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 101 ~f~~~~~a~~al~~lng~~l 120 (192)
+|-.......|+.+|.|..+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 44444455667777777654
No 148
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.43 E-value=3.5 Score=34.93 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 114 (192)
-.+.|=|.++|.....+||...|..|+. -.+|.++-+. .+|..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4578999999999999999999999975 5677887775 799999999999999853
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.03 E-value=0.21 Score=41.87 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=58.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
.++++|++|+..+...++-+.|..+|+|...++... ...-+|-+.|........|+. ++|..+.-....+.+-.|
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 378999999999999999999999999988877543 334577799988888888885 688777644444444444
Q ss_pred CC
Q 042948 133 EH 134 (192)
Q Consensus 133 ~~ 134 (192)
..
T Consensus 226 ~k 227 (479)
T KOG4676|consen 226 HK 227 (479)
T ss_pred cc
Confidence 43
No 150
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.23 E-value=13 Score=33.07 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=60.3
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcc----CCeeEEEEEecC----------CCCC---------------------
Q 042948 50 VNKAAVLYIGRIPRW-FYEKEMHAFFSQF----GTIRRLRIARNK----------KTGK--------------------- 93 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~~~~~~----------~tg~--------------------- 93 (192)
....++|-|-||.|+ +...+|.-+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445678999999986 6788999998876 578888875321 1122
Q ss_pred ----------------cccEEEEEEcCHHHHHHHHHHhCCceeC--CeeEEEEEcC
Q 042948 94 ----------------SKHFGFIEFSDPDVAEVVADAMHGYLLF--EHILQVHLIP 131 (192)
Q Consensus 94 ----------------~~g~afV~f~~~~~a~~al~~lng~~l~--g~~i~v~~a~ 131 (192)
..-||.|+|.+...|......+.|..+. +..|-+++..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1236889999999999999999999996 4455555543
No 151
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=71.19 E-value=0.6 Score=40.86 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
..+.+|+.|++++++-.+|..++..+--+..+.+..+........+++|+|.-.-...-|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3578999999999999999999999876767666544433344567889998877788888888987665433
No 152
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.55 E-value=18 Score=22.79 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=43.1
Q ss_pred HHHHHHHhccCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 68 KEMHAFFSQFGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 68 ~~l~~~F~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.+|.+-|...|- +..++.+..+.++.+...-+|+.....+... .|+=..|+|+.+.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 467778888885 8888888888777777788888865433333 355566789888777543
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.17 E-value=15 Score=25.70 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=27.1
Q ss_pred CcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 042948 65 FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVAD 113 (192)
Q Consensus 65 ~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~-~~~a~~al~ 113 (192)
.+.+.|.+.|..|.++. ++...+. .-+.|++.|.|.+ ......|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35578999999998874 4444554 2468999999975 455566664
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=61.44 E-value=10 Score=28.99 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=43.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 112 (192)
......+++++++..++...+...|..+|.+....+...........+.++.+.....+..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 455678999999999999999999999999977766655533333344444444333333333
No 155
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=58.36 E-value=30 Score=21.60 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=42.8
Q ss_pred HHHHHHHhccCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 68 KEMHAFFSQFGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 68 ~~l~~~F~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
++|.+-|...|- |..+.-+..+.++.....-||+.....+... .++=..+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 456777777774 7788877777677777888888876544222 3555667888887776543
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=58.22 E-value=0.48 Score=40.17 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=61.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEE-ecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIA-RNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~-~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..++.+-|.|+|+...++.|..++.+||.+..|..+ .+.. .-..-|+|...+.+..||..+||..+....+.|.|
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 345678999999999999999999999999888553 3321 12334678899999999999999999888888877
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
-.
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 44
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.46 E-value=20 Score=29.24 Aligned_cols=79 Identities=13% Similarity=0.238 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCC-------CCCcccEEEEEEcCHHHHHH----HHHHhCCc--e
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKK-------TGKSKHFGFIEFSDPDVAEV----VADAMHGY--L 119 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~-------tg~~~g~afV~f~~~~~a~~----al~~lng~--~ 119 (192)
.+.|.+.|+..+++-..+-.-|.+||+|.+|.++.+.. .........+.|-+.+.|.. .++.|..+ .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 46688899999998888888899999999999987751 12234567788888877643 34444432 3
Q ss_pred eCCeeEEEEEcC
Q 042948 120 LFEHILQVHLIP 131 (192)
Q Consensus 120 l~g~~i~v~~a~ 131 (192)
+....|.+.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 567777776654
No 158
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.06 E-value=31 Score=21.23 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.0
Q ss_pred HHHHHHHhccCCeeEEEE
Q 042948 68 KEMHAFFSQFGTIRRLRI 85 (192)
Q Consensus 68 ~~l~~~F~~~G~i~~v~~ 85 (192)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876654
No 159
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=56.60 E-value=11 Score=29.67 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRL 83 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 83 (192)
+..+....+|+-|+|..++++.|..+.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455667889999999999999999999999865443
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=54.79 E-value=32 Score=22.68 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=30.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEc
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFS 103 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~ 103 (192)
.-||||+++..+.+.-...+....+.-.-+-+..+. + ..||+|-.+-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEeC
Confidence 459999999998877555555545444333333332 2 6789987763
No 161
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.35 E-value=26 Score=29.60 Aligned_cols=68 Identities=16% Similarity=0.357 Sum_probs=46.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGT-IRRLRIARNKKT--GKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~t--g~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
-+.|.|.+||+..++.+|.+....|-. +....+.....+ ..-.+.+||.|...++...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 356889999999999999887776533 222333321111 11256789999999998887788888765
No 162
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.70 E-value=3 Score=35.71 Aligned_cols=79 Identities=6% Similarity=-0.137 Sum_probs=58.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
...|+..+|..+++.++.-.|..||-|..+.+.+.-..|...-.+|+.... ..+..||..+-...+.|..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 345777889999999999999999999888776665555566677877654 4567777666666777777877776543
No 163
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.30 E-value=25 Score=26.62 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=49.8
Q ss_pred cEEEEcCCCCCCcH-----HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-eEEE
Q 042948 54 AVLYIGRIPRWFYE-----KEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEH-ILQV 127 (192)
Q Consensus 54 ~~l~V~nLp~~~te-----~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~-~i~v 127 (192)
.++.+.+++..+-. .....+|.+|.+....++.+. .+..-|.|.+.+.|..|...+++..|.|+ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 45666676655332 233456666665544444332 24556889999999999999999999888 7777
Q ss_pred EEcCCCC
Q 042948 128 HLIPPEH 134 (192)
Q Consensus 128 ~~a~~~~ 134 (192)
-++++..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 6766543
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.32 E-value=65 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=20.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHH
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFF 74 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F 74 (192)
....++|-|.|||....+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4567899999999999999998643
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=39.69 E-value=40 Score=27.08 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=26.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEec
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~ 88 (192)
....|+|||++++..-+..++...-.+....++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 45779999999999999999887655545555433
No 166
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.63 E-value=46 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=25.1
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 98 GFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 98 afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
|||+|.+..+|+.|++.+.... +..+.+..|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999998655543 344566666543
No 167
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=39.44 E-value=69 Score=21.66 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=28.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
.-||||+++..+.+.--..+-+.++.-.-+-+..+ ....||+|-++..
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 45999999988876644444444544333333333 2334899987764
No 168
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.00 E-value=65 Score=28.34 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=43.3
Q ss_pred EEcCCCCCCc---HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 57 YIGRIPRWFY---EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 57 ~V~nLp~~~t---e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
+||||+.-.. ...+..+=.+||+|..+++-.. -.|...+.+.|+.|+.. |+..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 5777765433 3455666668999987776332 37788999999999964 8888888875
No 169
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=31.03 E-value=2.6e+02 Score=24.72 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh----ccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFS----QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln 116 (192)
++..+-++.-....+..+|..+|. .+|-|..+.+...+. .......++.|.+.+++..++..+.
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 445555553332333456777665 577788887766552 3345567889999999988887654
No 170
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=30.01 E-value=2e+02 Score=20.26 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHhc-cCC----eeEEEEEecCCCCCcccEEEEEEcCHHHHHH
Q 042948 64 WFYEKEMHAFFSQ-FGT----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110 (192)
Q Consensus 64 ~~te~~l~~~F~~-~G~----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~ 110 (192)
+++.++|++-++. |-. |.-.-+-..-..|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4677888877665 322 333344455567888899976 666665543
No 171
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.97 E-value=1.6e+02 Score=19.21 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=40.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-cCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 042948 56 LYIGRIPRWFYEKEMHAFFSQ-FGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADA 114 (192)
Q Consensus 56 l~V~nLp~~~te~~l~~~F~~-~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 114 (192)
-|+--++..++..+++..++. ||. |..|....-+ .+ .-=|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHh
Confidence 455557889999999999988 664 7777666554 22 22599999988887766543
No 172
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=29.79 E-value=81 Score=23.95 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=36.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcc-CCeeEEEEEecCCCC--CcccEEEEEEcCHHHHHHHHHH
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQF-GTIRRLRIARNKKTG--KSKHFGFIEFSDPDVAEVVADA 114 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~~~~~~~tg--~~~g~afV~f~~~~~a~~al~~ 114 (192)
.+++|.. .|++.|..+..-- |.+..+.+-+.. .+ ..+|-.||+|.+.+.+..+++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4566665 4455554443322 677777665543 33 4578899999999999987754
No 173
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.44 E-value=24 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=47.2
Q ss_pred CcEEEEcCCCCCCcHH--------HHHHHHhc--cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 042948 53 AAVLYIGRIPRWFYEK--------EMHAFFSQ--FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~--------~l~~~F~~--~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 112 (192)
.+.+|+.+++...+.+ ++...|.. .+.+..+...++......+|..|++|...+.+++.+
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4668888877665544 88899988 567777777777656677899999999999999876
No 174
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.52 E-value=70 Score=20.67 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=21.6
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCce
Q 042948 94 SKHFGFIEFSDPDVAEVVADAMHGYL 119 (192)
Q Consensus 94 ~~g~afV~f~~~~~a~~al~~lng~~ 119 (192)
.+||-||+=.+..++..|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 58999999999999999998776643
No 175
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=27.55 E-value=74 Score=25.25 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFS 75 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~ 75 (192)
....++|||||+.++..-|..++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 356789999999999999998887
No 176
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.45 E-value=1.8e+02 Score=18.62 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=39.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-cCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH
Q 042948 56 LYIGRIPRWFYEKEMHAFFSQ-FGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113 (192)
Q Consensus 56 l~V~nLp~~~te~~l~~~F~~-~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 113 (192)
-|+-.++..++-.+|+..++. ||. |..|....-+ .+ .-=|||.+...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHH
Confidence 555668899999999999987 664 7777665554 22 2248999988777766543
No 177
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=25.50 E-value=1.8e+02 Score=19.33 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=27.9
Q ss_pred cEEEEcCCCCCCcHHHHH---HHHhccCCeeEEEE--EecCCCCCcccEEEEEE
Q 042948 54 AVLYIGRIPRWFYEKEMH---AFFSQFGTIRRLRI--ARNKKTGKSKHFGFIEF 102 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~~--~~~~~tg~~~g~afV~f 102 (192)
...|+.+||..+.+.++. ..|..++.-..|.. ......+.+.|++.+.+
T Consensus 11 g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 11 GIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 357899999999887765 44445543333333 11233556677776544
No 178
>PRK11901 hypothetical protein; Reviewed
Probab=24.77 E-value=2e+02 Score=24.00 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEE--EEEcCHHHHHHHHHHhCCc
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGF--IEFSDPDVAEVVADAMHGY 118 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~af--V~f~~~~~a~~al~~lng~ 118 (192)
...+|-|..+ -.++.|..|..+++ +..+++......|+ .+|.. -.|.+.++|..|+..|-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3445555443 45777888877775 34455555443444 34543 3789999999999887643
No 179
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.07 E-value=1.8e+02 Score=19.04 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=20.7
Q ss_pred CeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 79 TIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 79 ~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
.|.++++..-...|+.+|||=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778877766668999999999987
No 180
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=22.24 E-value=97 Score=20.48 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=26.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQ-FGTIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
.-||||+++..+.+.--..+-+. .+.-.-+-+..+ ....||.|-++..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEEecCC
Confidence 45999999988876533333333 233222222222 2345788877654
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=21.78 E-value=1.1e+02 Score=24.44 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=18.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQ 76 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~ 76 (192)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5779999999998888888754
No 182
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.26 E-value=65 Score=20.12 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCCCCcHHH
Q 042948 51 NKAAVLYIGRIPRWFYEKE 69 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~ 69 (192)
..++.+|||++|..+-.+.
T Consensus 25 ~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HcCceEEECCCChHHHHcC
Confidence 4578999999998765543
Done!