Query 042948
Match_columns 192
No_of_seqs 247 out of 2260
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 19:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5.8E-24 2E-28 145.0 12.1 84 49-132 15-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 3.1E-23 1E-27 139.2 7.3 88 53-140 1-90 (91)
3 3s8s_A Histone-lysine N-methyl 99.9 1.1E-22 3.7E-27 141.3 9.8 85 51-135 4-88 (110)
4 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.4E-21 4.7E-26 129.5 11.7 83 51-133 4-86 (87)
5 3md1_A Nuclear and cytoplasmic 99.9 2.6E-21 8.8E-26 127.1 12.2 81 54-134 2-82 (83)
6 2do4_A Squamous cell carcinoma 99.9 5.9E-21 2E-25 129.9 14.0 85 50-135 14-98 (100)
7 2dgo_A Cytotoxic granule-assoc 99.9 8.6E-21 2.9E-25 132.2 14.8 87 50-136 12-98 (115)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.9E-21 9.8E-26 127.4 10.8 82 50-131 4-85 (85)
9 2dgs_A DAZ-associated protein 99.9 4.9E-21 1.7E-25 130.0 12.1 86 50-136 7-92 (99)
10 1x5u_A Splicing factor 3B subu 99.9 5.4E-21 1.9E-25 131.1 12.4 87 50-136 12-98 (105)
11 4f25_A Polyadenylate-binding p 99.9 3.2E-21 1.1E-25 134.7 11.5 82 52-135 4-85 (115)
12 1whw_A Hypothetical protein ri 99.9 5E-21 1.7E-25 129.9 12.1 86 51-136 6-91 (99)
13 2lkz_A RNA-binding protein 5; 99.9 6.7E-22 2.3E-26 133.7 7.7 80 53-132 9-94 (95)
14 2cq0_A Eukaryotic translation 99.9 4.3E-21 1.5E-25 131.2 11.6 87 50-136 12-98 (103)
15 2x1f_A MRNA 3'-END-processing 99.9 4.3E-21 1.5E-25 129.7 11.3 83 53-135 2-84 (96)
16 2dnz_A Probable RNA-binding pr 99.9 5.7E-21 2E-25 128.6 11.9 85 51-135 3-87 (95)
17 2dnm_A SRP46 splicing factor; 99.9 2.7E-21 9.2E-26 132.3 10.4 87 50-136 10-96 (103)
18 2cpz_A CUG triplet repeat RNA- 99.9 7.9E-21 2.7E-25 132.5 12.6 87 50-136 22-108 (115)
19 1p27_B RNA-binding protein 8A; 99.9 5.1E-21 1.7E-25 131.5 11.4 85 50-134 20-104 (106)
20 2cqc_A Arginine/serine-rich sp 99.9 6.8E-21 2.3E-25 128.2 11.7 83 50-132 12-94 (95)
21 2la6_A RNA-binding protein FUS 99.9 6.6E-21 2.3E-25 129.4 11.6 83 49-131 9-99 (99)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.4E-21 1.5E-25 130.9 10.6 87 50-136 9-95 (102)
23 3p5t_L Cleavage and polyadenyl 99.9 8E-22 2.7E-26 131.8 6.7 82 54-135 2-85 (90)
24 1x5t_A Splicing factor 3B subu 99.9 4.1E-21 1.4E-25 129.6 10.1 86 51-136 3-89 (96)
25 1x4h_A RNA-binding protein 28; 99.9 1.3E-20 4.5E-25 130.4 12.7 87 50-136 12-104 (111)
26 2jrs_A RNA-binding protein 39; 99.9 1.7E-20 5.8E-25 129.7 13.2 85 50-134 23-107 (108)
27 2e5h_A Zinc finger CCHC-type a 99.9 8.8E-21 3E-25 127.4 11.4 82 50-131 13-94 (94)
28 1oo0_B CG8781-PA, drosophila Y 99.9 6.4E-21 2.2E-25 131.9 11.0 85 50-134 23-107 (110)
29 2dgp_A Bruno-like 4, RNA bindi 99.9 7.3E-21 2.5E-25 130.7 11.2 88 49-136 9-99 (106)
30 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-20 5.7E-25 128.7 12.7 85 51-136 13-100 (105)
31 2cph_A RNA binding motif prote 99.8 1E-20 3.5E-25 130.1 11.6 88 49-136 11-100 (107)
32 3ns6_A Eukaryotic translation 99.8 1E-21 3.6E-26 133.9 6.5 82 52-133 5-93 (100)
33 1x5s_A Cold-inducible RNA-bind 99.8 7.6E-21 2.6E-25 129.7 10.6 86 50-135 9-94 (102)
34 2d9p_A Polyadenylate-binding p 99.8 1.2E-20 4.1E-25 129.0 11.6 86 49-136 11-96 (103)
35 2cqd_A RNA-binding region cont 99.8 3.3E-20 1.1E-24 129.5 14.0 84 50-134 14-97 (116)
36 4a8x_A RNA-binding protein wit 99.8 8.2E-21 2.8E-25 126.0 10.3 83 52-134 3-86 (88)
37 2dng_A Eukaryotic translation 99.8 2.3E-20 7.7E-25 127.7 12.6 85 50-136 12-96 (103)
38 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-20 5.2E-25 128.8 11.6 85 50-136 12-97 (104)
39 2cpf_A RNA binding motif prote 99.8 9.7E-21 3.3E-25 128.3 10.4 85 51-135 3-90 (98)
40 2div_A TRNA selenocysteine ass 99.8 1.4E-20 4.8E-25 127.7 10.8 84 51-134 7-95 (99)
41 2cpe_A RNA-binding protein EWS 99.8 1.4E-20 4.6E-25 130.8 11.0 86 50-135 12-105 (113)
42 2fy1_A RNA-binding motif prote 99.8 2.5E-20 8.6E-25 130.4 12.3 84 51-135 5-88 (116)
43 2kxn_B Transformer-2 protein h 99.8 8.7E-21 3E-25 135.2 10.1 86 49-134 42-127 (129)
44 2khc_A Testis-specific RNP-typ 99.8 3.6E-20 1.2E-24 129.6 13.0 83 49-131 36-118 (118)
45 1u6f_A Tcubp1, RNA-binding pro 99.8 5.1E-20 1.7E-24 132.5 14.0 87 50-136 39-125 (139)
46 3s7r_A Heterogeneous nuclear r 99.8 3E-20 1E-24 123.1 11.8 80 50-130 8-87 (87)
47 3ucg_A Polyadenylate-binding p 99.8 2.4E-20 8.1E-25 124.0 11.2 80 53-133 6-85 (89)
48 3n9u_C Cleavage and polyadenyl 99.8 1.4E-20 4.7E-25 138.3 10.9 83 51-133 53-137 (156)
49 3ulh_A THO complex subunit 4; 99.8 3.4E-20 1.2E-24 127.5 12.1 81 50-131 26-106 (107)
50 2dhg_A TRNA selenocysteine ass 99.8 1.8E-20 6.1E-25 128.3 10.6 86 50-136 6-93 (104)
51 2dgx_A KIAA0430 protein; RRM d 99.8 3.9E-20 1.3E-24 125.1 11.8 83 50-135 6-92 (96)
52 2ywk_A Putative RNA-binding pr 99.8 3E-20 1E-24 125.1 11.0 82 50-132 13-94 (95)
53 1p1t_A Cleavage stimulation fa 99.8 6.3E-21 2.1E-25 130.5 7.6 85 51-135 6-90 (104)
54 2cq3_A RNA-binding protein 9; 99.8 8.9E-20 3.1E-24 124.6 13.4 86 49-136 11-96 (103)
55 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.8E-20 3.4E-24 124.4 13.3 84 50-135 12-95 (103)
56 2rs2_A Musashi-1, RNA-binding 99.8 2.9E-20 1E-24 128.6 10.7 86 50-136 22-107 (109)
57 1s79_A Lupus LA protein; RRM, 99.8 1.4E-20 4.9E-25 129.0 9.0 80 51-132 9-88 (103)
58 2lea_A Serine/arginine-rich sp 99.8 9E-21 3.1E-25 136.1 8.1 89 48-136 42-130 (135)
59 2do0_A HnRNP M, heterogeneous 99.8 1.7E-19 5.7E-24 125.4 14.3 86 50-136 12-97 (114)
60 2dgv_A HnRNP M, heterogeneous 99.8 5.7E-20 2E-24 123.0 11.4 84 50-135 5-88 (92)
61 2dh8_A DAZ-associated protein 99.8 3.2E-20 1.1E-24 127.3 10.2 86 50-136 13-98 (105)
62 3ex7_B RNA-binding protein 8A; 99.8 3E-20 1E-24 131.5 10.3 87 50-136 19-105 (126)
63 2kt5_A RNA and export factor-b 99.8 2.4E-19 8.1E-24 126.6 14.8 87 49-136 31-117 (124)
64 2kn4_A Immunoglobulin G-bindin 99.8 6.5E-20 2.2E-24 134.6 12.3 87 50-136 67-153 (158)
65 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.1E-19 3.6E-24 133.3 13.3 86 50-135 36-121 (156)
66 2dgw_A Probable RNA-binding pr 99.8 1E-19 3.6E-24 121.6 12.0 82 50-134 7-88 (91)
67 2cqp_A RNA-binding protein 12; 99.8 2.8E-20 9.7E-25 125.9 9.3 84 50-133 12-95 (98)
68 1x5o_A RNA binding motif, sing 99.8 2.1E-19 7.2E-24 125.0 13.7 83 50-133 22-112 (114)
69 2m2b_A RNA-binding protein 10; 99.8 1.6E-20 5.4E-25 134.0 8.0 85 50-135 20-110 (131)
70 2ek1_A RNA-binding protein 12; 99.8 2.1E-20 7.3E-25 125.8 8.1 82 51-132 13-94 (95)
71 2cqg_A TDP-43, TAR DNA-binding 99.8 2.3E-19 7.8E-24 122.6 13.3 84 50-135 12-95 (103)
72 2jwn_A Embryonic polyadenylate 99.8 2E-20 6.9E-25 132.0 8.1 83 51-134 34-116 (124)
73 2mss_A Protein (musashi1); RNA 99.8 1.6E-20 5.6E-25 121.0 6.6 75 55-130 1-75 (75)
74 2cq4_A RNA binding motif prote 99.8 3.9E-20 1.3E-24 128.7 9.0 82 51-133 23-104 (114)
75 1x4e_A RNA binding motif, sing 99.8 9.5E-21 3.3E-25 125.0 5.5 80 51-130 3-82 (85)
76 1fj7_A Nucleolin RBD1, protein 99.8 8.8E-21 3E-25 129.2 5.5 84 50-135 14-97 (101)
77 1x4b_A Heterogeneous nuclear r 99.8 4.5E-20 1.5E-24 128.8 9.2 85 51-136 25-109 (116)
78 1sjq_A Polypyrimidine tract-bi 99.8 6E-20 2.1E-24 125.8 9.5 80 51-136 14-95 (105)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-20 6E-25 127.7 6.6 84 49-134 15-99 (100)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-19 4.1E-24 134.3 11.6 86 50-135 69-154 (165)
81 2nlw_A Eukaryotic translation 99.8 9.8E-20 3.3E-24 125.1 10.3 81 51-133 13-100 (105)
82 2dis_A Unnamed protein product 99.8 8.2E-20 2.8E-24 126.0 9.8 85 51-135 6-94 (109)
83 1x4a_A Splicing factor, argini 99.8 6.7E-19 2.3E-23 121.5 14.4 84 50-136 19-102 (109)
84 2err_A Ataxin-2-binding protei 99.8 1.1E-19 3.8E-24 125.7 10.2 83 49-133 25-107 (109)
85 2ki2_A SS-DNA binding protein 99.8 1.1E-20 3.8E-25 126.0 4.8 81 54-135 2-82 (90)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.7E-19 5.8E-24 129.6 11.2 82 49-130 59-140 (140)
87 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-19 4.4E-24 119.4 9.5 74 52-131 6-79 (89)
88 2ad9_A Polypyrimidine tract-bi 99.8 2.2E-19 7.4E-24 125.9 11.0 82 49-136 27-110 (119)
89 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3E-20 1E-24 120.2 6.2 76 54-130 1-76 (77)
90 2cpi_A CCR4-NOT transcription 99.8 7.4E-20 2.5E-24 126.9 8.3 83 52-134 14-102 (111)
91 2cpx_A Hypothetical protein FL 99.8 6.9E-20 2.4E-24 127.6 8.2 87 50-136 22-108 (115)
92 2cq1_A PTB-like protein L; RRM 99.8 4.9E-19 1.7E-23 120.8 12.0 81 50-136 12-94 (101)
93 1wel_A RNA-binding protein 12; 99.8 1.1E-19 3.9E-24 128.4 8.9 85 48-133 20-104 (124)
94 1wg5_A Heterogeneous nuclear r 99.8 2.5E-19 8.4E-24 122.9 10.3 83 50-134 12-95 (104)
95 3r27_A HnRNP L, heterogeneous 99.8 3.5E-19 1.2E-23 120.9 10.9 79 50-134 18-98 (100)
96 2a3j_A U1 small nuclear ribonu 99.8 2.7E-19 9.1E-24 127.1 10.6 81 51-134 27-111 (127)
97 2db1_A Heterogeneous nuclear r 99.8 3E-19 1E-23 125.3 10.6 82 50-133 14-98 (118)
98 2cpy_A RNA-binding protein 12; 99.8 1.3E-19 4.4E-24 126.3 8.3 83 50-134 12-95 (114)
99 2fc9_A NCL protein; structure 99.8 5.7E-19 2E-23 120.2 11.2 82 50-135 12-93 (101)
100 1wez_A HnRNP H', FTP-3, hetero 99.8 3.8E-19 1.3E-23 121.6 9.9 81 51-134 13-93 (102)
101 2dnq_A RNA-binding protein 4B; 99.8 8.6E-19 3E-23 116.9 11.4 79 50-136 5-83 (90)
102 2hgl_A HNRPF protein, heteroge 99.8 1.7E-19 5.8E-24 129.5 8.3 83 49-133 40-125 (136)
103 2fc8_A NCL protein; structure 99.8 7.4E-19 2.5E-23 119.8 11.1 84 50-136 12-95 (102)
104 1x4c_A Splicing factor, argini 99.8 1.1E-18 3.9E-23 120.3 12.2 79 50-135 12-95 (108)
105 1why_A Hypothetical protein ri 99.8 1.2E-18 4.1E-23 117.8 12.0 78 51-134 15-94 (97)
106 2krb_A Eukaryotic translation 99.8 1.1E-19 3.6E-24 119.1 6.5 73 53-127 1-80 (81)
107 3md3_A Nuclear and cytoplasmic 99.8 8.8E-19 3E-23 128.4 12.1 103 30-132 61-166 (166)
108 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-18 3.9E-23 117.9 11.5 80 50-134 16-95 (97)
109 2dgu_A Heterogeneous nuclear r 99.8 2E-18 6.8E-23 118.0 12.8 80 51-138 9-88 (103)
110 1x4d_A Matrin 3; structural ge 99.8 4E-19 1.4E-23 121.4 9.1 78 51-134 13-93 (102)
111 1fjc_A Nucleolin RBD2, protein 99.8 3.8E-19 1.3E-23 119.9 9.0 81 49-134 12-92 (96)
112 3q2s_C Cleavage and polyadenyl 99.8 2.5E-19 8.5E-24 139.5 8.8 82 52-133 67-150 (229)
113 1iqt_A AUF1, heterogeneous nuc 99.8 9.1E-20 3.1E-24 117.4 5.2 75 55-130 1-75 (75)
114 1nu4_A U1A RNA binding domain; 99.8 3.1E-19 1.1E-23 120.5 8.1 82 50-134 5-90 (97)
115 2g4b_A Splicing factor U2AF 65 99.8 5.1E-19 1.7E-23 130.7 9.9 102 29-130 69-171 (172)
116 2jvo_A Nucleolar protein 3; nu 99.8 9E-19 3.1E-23 120.9 10.3 79 49-135 27-105 (108)
117 1x4g_A Nucleolysin TIAR; struc 99.8 1.4E-18 4.7E-23 120.0 11.2 80 50-135 22-101 (109)
118 3lqv_A PRE-mRNA branch site pr 99.8 9.2E-19 3.1E-23 121.9 10.4 82 50-134 5-86 (115)
119 2lmi_A GRSF-1, G-rich sequence 99.8 1E-19 3.5E-24 125.4 5.4 83 49-133 7-92 (107)
120 1wex_A Hypothetical protein (r 99.8 1.3E-18 4.4E-23 119.4 10.8 80 51-136 13-94 (104)
121 2jvr_A Nucleolar protein 3; RN 99.8 6.9E-19 2.3E-23 122.1 9.3 79 51-133 26-105 (111)
122 2dgt_A RNA-binding protein 30; 99.8 3.3E-18 1.1E-22 114.5 12.3 78 50-135 7-84 (92)
123 2xnq_A Nuclear polyadenylated 99.8 2.4E-18 8.2E-23 116.5 11.5 77 49-133 18-95 (97)
124 2la4_A Nuclear and cytoplasmic 99.8 8E-19 2.7E-23 119.4 9.1 77 51-133 25-101 (101)
125 2ytc_A PRE-mRNA-splicing facto 99.8 2E-18 6.8E-23 113.7 10.8 76 50-131 9-85 (85)
126 2cpj_A Non-POU domain-containi 99.8 1.4E-18 4.7E-23 117.9 10.2 79 50-134 12-90 (99)
127 1wf1_A RNA-binding protein RAL 99.8 4.4E-18 1.5E-22 117.6 12.9 78 49-134 23-101 (110)
128 4f02_A Polyadenylate-binding p 99.8 2E-18 6.8E-23 132.6 12.3 84 51-134 13-96 (213)
129 2hvz_A Splicing factor, argini 99.8 8.9E-19 3E-23 119.2 9.1 77 54-135 1-77 (101)
130 2dnp_A RNA-binding protein 14; 99.8 2.7E-18 9.2E-23 114.5 11.2 79 50-136 6-84 (90)
131 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.6E-23 120.8 9.0 79 51-132 14-92 (109)
132 2lcw_A RNA-binding protein FUS 99.6 1.9E-20 6.4E-25 130.8 0.0 87 50-136 4-98 (116)
133 2xs2_A Deleted in azoospermia- 99.8 4.4E-19 1.5E-23 121.0 6.7 81 51-134 7-87 (102)
134 2i2y_A Fusion protein consists 99.8 2.6E-18 8.7E-23 125.1 10.9 81 49-134 69-149 (150)
135 1fxl_A Paraneoplastic encephal 99.8 4.3E-18 1.5E-22 124.8 12.3 82 53-134 2-83 (167)
136 2j8a_A Histone-lysine N-methyl 99.8 1.2E-18 4.1E-23 122.3 8.6 80 54-133 3-96 (136)
137 2yh0_A Splicing factor U2AF 65 99.8 1.9E-18 6.6E-23 130.4 10.5 84 51-134 112-195 (198)
138 2cpd_A Apobec-1 stimulating pr 99.8 1E-17 3.6E-22 113.5 13.0 78 50-135 12-91 (99)
139 3egn_A RNA-binding protein 40; 99.8 3.4E-19 1.2E-23 128.8 5.7 87 50-136 42-133 (143)
140 2qfj_A FBP-interacting repress 99.8 3.6E-18 1.2E-22 130.6 11.6 105 30-134 90-206 (216)
141 1b7f_A Protein (SXL-lethal pro 99.8 3.2E-18 1.1E-22 125.9 10.8 84 52-135 2-85 (168)
142 2f3j_A RNA and export factor b 99.8 2.2E-18 7.6E-23 129.1 10.0 84 50-134 85-168 (177)
143 1x4f_A Matrin 3; structural ge 99.8 2.8E-18 9.5E-23 119.0 9.3 79 50-134 22-103 (112)
144 2kvi_A Nuclear polyadenylated 99.8 2.5E-18 8.5E-23 116.1 8.8 78 50-135 7-85 (96)
145 1whx_A Hypothetical protein ri 99.8 1.2E-18 4.2E-23 120.8 7.3 76 52-133 9-84 (111)
146 2cqh_A IGF-II mRNA-binding pro 99.8 2.8E-18 9.7E-23 115.0 8.6 79 51-136 6-86 (93)
147 2e44_A Insulin-like growth fac 99.8 4.4E-18 1.5E-22 114.6 9.5 80 51-134 13-93 (96)
148 1b7f_A Protein (SXL-lethal pro 99.8 3.4E-18 1.2E-22 125.7 9.6 101 30-130 65-168 (168)
149 2dha_A FLJ20171 protein; RRM d 99.8 1.3E-18 4.5E-23 122.8 7.0 81 51-133 21-105 (123)
150 3pgw_S U1-70K; protein-RNA com 99.8 5E-18 1.7E-22 143.5 11.7 85 51-135 100-184 (437)
151 4f02_A Polyadenylate-binding p 99.7 1.2E-18 4.2E-23 133.8 6.5 103 30-134 77-182 (213)
152 2e5g_A U6 snRNA-specific termi 99.7 9.9E-18 3.4E-22 112.6 10.0 78 52-135 7-84 (94)
153 2hgn_A Heterogeneous nuclear r 99.7 6.5E-19 2.2E-23 126.9 4.4 84 50-136 43-126 (139)
154 1l3k_A Heterogeneous nuclear r 99.7 1.1E-17 3.6E-22 126.1 11.2 84 50-134 10-93 (196)
155 3md3_A Nuclear and cytoplasmic 99.7 4.5E-18 1.5E-22 124.6 8.6 80 54-134 1-80 (166)
156 1l3k_A Heterogeneous nuclear r 99.7 7.4E-18 2.5E-22 126.9 9.8 85 51-136 102-186 (196)
157 1fxl_A Paraneoplastic encephal 99.7 6.6E-18 2.3E-22 123.8 9.2 101 30-130 64-167 (167)
158 1x5p_A Negative elongation fac 99.7 3.1E-17 1E-21 110.8 11.8 78 51-136 13-90 (97)
159 2cjk_A Nuclear polyadenylated 99.7 4.8E-18 1.7E-22 124.9 8.2 99 34-133 67-166 (167)
160 1wg1_A KIAA1579 protein, homol 99.7 1E-17 3.6E-22 111.2 8.9 76 52-134 4-79 (88)
161 2hgm_A HNRPF protein, heteroge 99.7 5.3E-18 1.8E-22 120.1 7.4 81 50-133 39-121 (126)
162 1sjr_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 120.7 11.5 80 51-134 44-125 (164)
163 3d2w_A TAR DNA-binding protein 99.7 2.2E-17 7.4E-22 110.1 9.3 77 49-134 7-85 (89)
164 2cq2_A Hypothetical protein LO 99.7 1.3E-17 4.3E-22 115.9 8.3 77 51-133 23-106 (114)
165 2dnl_A Cytoplasmic polyadenyla 99.7 1E-17 3.5E-22 116.6 7.6 80 51-133 6-88 (114)
166 3zzy_A Polypyrimidine tract-bi 99.7 7.6E-17 2.6E-21 114.4 11.8 77 53-134 28-107 (130)
167 3smz_A Protein raver-1, ribonu 99.7 1.1E-17 3.8E-22 133.3 8.4 102 30-136 77-178 (284)
168 1fje_B Nucleolin RBD12, protei 99.7 1.1E-17 3.9E-22 124.0 7.7 99 30-133 73-174 (175)
169 2diu_A KIAA0430 protein; struc 99.7 3.7E-17 1.3E-21 108.8 9.3 73 53-135 8-86 (96)
170 3beg_B Splicing factor, argini 99.7 1.4E-17 4.9E-22 116.1 7.4 77 51-134 14-95 (115)
171 2e5i_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 112.3 12.2 75 54-134 26-103 (124)
172 3tyt_A Heterogeneous nuclear r 99.7 5.4E-17 1.8E-21 124.2 10.6 77 52-133 3-80 (205)
173 2qfj_A FBP-interacting repress 99.7 5E-17 1.7E-21 124.2 10.2 84 51-134 26-109 (216)
174 3nmr_A Cugbp ELAV-like family 99.7 8.3E-17 2.8E-21 118.9 10.8 80 51-131 93-175 (175)
175 2hzc_A Splicing factor U2AF 65 99.7 6.4E-17 2.2E-21 106.8 8.6 71 51-128 4-85 (87)
176 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 7.8E-21 108.3 11.4 82 51-132 6-93 (105)
177 3nmr_A Cugbp ELAV-like family 99.7 8.8E-17 3E-21 118.7 9.9 83 52-134 2-89 (175)
178 2voo_A Lupus LA protein; RNA-b 99.7 1.4E-16 4.8E-21 120.8 11.0 79 52-132 108-186 (193)
179 2bz2_A Negative elongation fac 99.7 1.2E-16 4.2E-21 112.4 9.6 78 50-135 36-113 (121)
180 2ghp_A U4/U6 snRNA-associated 99.7 4.7E-17 1.6E-21 130.2 8.2 103 30-133 179-291 (292)
181 3smz_A Protein raver-1, ribonu 99.7 8.5E-17 2.9E-21 128.2 9.3 105 30-135 157-266 (284)
182 2cjk_A Nuclear polyadenylated 99.7 7.2E-17 2.5E-21 118.5 8.2 80 52-133 2-81 (167)
183 1wf0_A TDP-43, TAR DNA-binding 99.7 6.3E-17 2.1E-21 107.3 6.1 77 52-135 4-80 (88)
184 3pgw_A U1-A; protein-RNA compl 99.7 4.2E-16 1.5E-20 124.0 11.6 82 50-134 6-91 (282)
185 2adc_A Polypyrimidine tract-bi 99.7 5E-16 1.7E-20 120.4 10.1 81 48-133 29-110 (229)
186 3sde_A Paraspeckle component 1 99.6 5.8E-16 2E-20 122.4 8.9 99 30-134 78-180 (261)
187 2ghp_A U4/U6 snRNA-associated 99.6 4.7E-16 1.6E-20 124.4 8.2 99 30-135 100-199 (292)
188 3u1l_A PRE-mRNA-splicing facto 99.6 7.7E-16 2.6E-20 120.0 8.9 79 50-134 131-230 (240)
189 1fje_B Nucleolin RBD12, protei 99.6 2.6E-16 8.9E-21 116.6 5.5 84 50-135 10-93 (175)
190 1qm9_A Polypyrimidine tract-bi 99.6 8.9E-16 3.1E-20 116.0 7.4 77 52-133 2-79 (198)
191 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.8E-20 114.9 8.5 78 51-133 118-197 (198)
192 3tyt_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 116.3 8.2 78 51-130 121-204 (205)
193 3pgw_A U1-A; protein-RNA compl 99.6 5E-15 1.7E-19 117.8 11.4 76 51-131 205-281 (282)
194 2dit_A HIV TAT specific factor 99.6 1E-14 3.6E-19 100.9 11.5 80 51-134 13-103 (112)
195 3sde_A Paraspeckle component 1 99.6 6.3E-15 2.2E-19 116.4 11.4 78 50-133 19-96 (261)
196 2adc_A Polypyrimidine tract-bi 99.6 4.8E-15 1.7E-19 114.9 10.4 78 51-133 149-228 (229)
197 1jmt_A Splicing factor U2AF 35 99.6 7.1E-16 2.4E-20 105.7 4.7 73 58-131 20-104 (104)
198 3v4m_A Splicing factor U2AF 65 99.6 8.1E-15 2.8E-19 100.5 8.8 82 52-133 4-97 (105)
199 3ue2_A Poly(U)-binding-splicin 99.6 2.3E-14 7.8E-19 100.2 9.7 81 52-132 19-108 (118)
200 2yh0_A Splicing factor U2AF 65 99.5 2.6E-14 8.7E-19 107.6 9.8 75 52-133 3-88 (198)
201 2g4b_A Splicing factor U2AF 65 99.5 3.7E-14 1.3E-18 104.4 9.8 76 52-134 3-89 (172)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.9E-13 1.7E-17 90.7 11.2 66 63-135 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.5E-13 8.6E-18 111.0 9.9 76 50-131 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 2.4E-12 8.3E-17 89.3 9.6 78 52-133 6-93 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 9.2E-12 3.2E-16 82.0 8.1 74 51-133 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.9E-11 6.4E-16 85.3 8.5 80 49-134 14-97 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.7E-10 5.9E-15 76.3 7.0 73 50-131 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 3.3E-10 1.1E-14 87.0 8.8 68 65-132 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.7 1.5E-07 5E-12 63.6 10.0 74 50-129 18-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.8 0.00051 1.8E-08 45.8 11.5 84 52-144 7-95 (104)
211 1wey_A Calcipressin 1; structu 97.8 0.0001 3.5E-09 49.4 7.8 76 53-134 5-85 (104)
212 1whv_A Poly(A)-specific ribonu 97.7 0.0002 6.9E-09 47.3 7.3 55 53-116 16-70 (100)
213 1uw4_A UPF3X; nonsense mediate 97.6 0.0005 1.7E-08 45.1 8.4 67 54-120 2-70 (91)
214 3ctr_A Poly(A)-specific ribonu 97.5 0.0002 6.9E-09 47.4 5.6 55 53-116 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.4 0.001 3.4E-08 45.7 8.7 73 51-131 22-95 (119)
216 3p3d_A Nucleoporin 53; structu 97.0 0.00089 3E-08 46.7 4.6 79 52-132 6-98 (132)
217 2l08_A Regulator of nonsense t 96.8 0.0026 9E-08 42.0 5.6 68 53-120 9-78 (97)
218 3pq1_A Poly(A) RNA polymerase; 96.5 0.0016 5.4E-08 55.1 3.4 56 52-113 52-107 (464)
219 2kn4_A Immunoglobulin G-bindin 96.2 0.0063 2.2E-07 43.4 4.7 35 82-118 2-36 (158)
220 2i2y_A Fusion protein consists 95.7 0.0081 2.8E-07 42.5 3.4 41 91-132 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 93.4 0.26 9E-06 42.0 7.9 55 53-116 440-494 (507)
222 4f25_A Polyadenylate-binding p 83.9 0.098 3.3E-06 35.1 -1.7 18 52-69 96-113 (115)
223 3pgw_S U1-70K; protein-RNA com 67.0 0.081 2.8E-06 44.3 -7.1 15 69-83 8-22 (437)
224 2g0c_A ATP-dependent RNA helic 53.7 33 0.0011 20.5 6.0 68 55-131 2-75 (76)
225 4e8u_A Putative uncharacterize 51.9 40 0.0014 24.3 5.9 56 55-113 14-81 (172)
226 1xn9_A 30S ribosomal protein S 37.7 83 0.0028 20.4 6.1 48 63-111 28-80 (101)
227 1ywx_A 30S ribosomal protein S 35.7 91 0.0031 20.3 5.9 47 63-110 28-79 (102)
228 3fut_A Dimethyladenosine trans 34.8 30 0.001 26.6 3.3 33 54-87 111-143 (271)
229 2v94_A RPS24, 30S ribosomal pr 34.2 99 0.0034 20.3 6.1 47 63-110 37-88 (107)
230 3uzu_A Ribosomal RNA small sub 34.0 17 0.00058 28.1 1.7 35 54-88 115-149 (279)
231 4bby_A Alkyldihydroxyacetoneph 31.5 45 0.0015 29.1 4.2 56 59-115 349-408 (658)
232 2xzm_P RPS24E; ribosome, trans 26.9 1.6E+02 0.0056 20.5 5.6 47 63-110 31-82 (149)
233 1i4w_A Mitochondrial replicati 26.2 45 0.0015 26.8 3.0 23 54-76 143-165 (353)
234 1qyr_A KSGA, high level kasuga 26.2 60 0.002 24.5 3.6 33 54-86 91-123 (252)
235 3tqs_A Ribosomal RNA small sub 25.8 20 0.0007 27.2 0.9 34 55-88 98-131 (255)
236 3u5c_Y RP50, 40S ribosomal pro 25.4 1.7E+02 0.0057 20.1 6.6 47 63-110 33-84 (135)
237 3ftd_A Dimethyladenosine trans 24.4 56 0.0019 24.5 3.1 33 54-86 96-128 (249)
238 2i9x_A Putative septation prot 24.1 1.2E+02 0.0041 19.1 4.1 26 79-104 5-30 (87)
239 2ia9_A Putative septation prot 21.2 1.4E+02 0.0048 19.3 4.1 26 79-104 5-30 (100)
240 2i9z_A Putative septation prot 20.3 1.5E+02 0.0052 19.3 4.2 26 79-104 5-30 (105)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=5.8e-24 Score=144.98 Aligned_cols=84 Identities=23% Similarity=0.470 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
....+++|||+|||+++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++.|||..|+|++|.|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q 042948 129 LIPP 132 (192)
Q Consensus 129 ~a~~ 132 (192)
+|+|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9976
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=3.1e-23 Score=139.23 Aligned_cols=88 Identities=23% Similarity=0.432 Sum_probs=79.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC-CceeCCeeEEEEEc
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH-GYLLFEHILQVHLI 130 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln-g~~l~g~~i~v~~a 130 (192)
+.+|||+|||+++|+++|+++|++|| .|.+|++++++.+|.++|||||+|.+.++|.+|++.++ +..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999998874 56799999999999
Q ss_pred CCCCCCcccc
Q 042948 131 PPEHVHPKLW 140 (192)
Q Consensus 131 ~~~~~~~~~~ 140 (192)
.++.....-|
T Consensus 81 ~~~~~~~~DW 90 (91)
T 2lxi_A 81 DPKPKINEDW 90 (91)
T ss_dssp CSCCCCSCSC
T ss_pred CCCCCCCCCC
Confidence 9876554433
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=141.27 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
++.++|||+|||+++++++|+++|++||.|.+|.++.++.||+++|||||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 042948 131 PPEHV 135 (192)
Q Consensus 131 ~~~~~ 135 (192)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=129.53 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 042948 131 PPE 133 (192)
Q Consensus 131 ~~~ 133 (192)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=2.6e-21 Score=127.10 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=78.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
.+|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|++|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q 042948 134 H 134 (192)
Q Consensus 134 ~ 134 (192)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.9e-21 Score=129.86 Aligned_cols=85 Identities=22% Similarity=0.405 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3557899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988653
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=8.6e-21 Score=132.24 Aligned_cols=87 Identities=23% Similarity=0.369 Sum_probs=82.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9987644
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2.9e-21 Score=127.43 Aligned_cols=82 Identities=30% Similarity=0.494 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|++.|||..++|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.9e-21 Score=130.04 Aligned_cols=86 Identities=22% Similarity=0.467 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|++ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4557899999999999999999999999999999999999899999999999999999999998 999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9987543
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.4e-21 Score=131.11 Aligned_cols=87 Identities=21% Similarity=0.394 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9987643
No 11
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=3.2e-21 Score=134.71 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
...+|||+|||+++++++|+++|++||.|.+|+++.+. +.++|||||+|.+.++|..||+.|||..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999985 4479999999999999999999999999999999999998
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7654
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=129.93 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=81.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.+.++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 042948 131 PPEHVH 136 (192)
Q Consensus 131 ~~~~~~ 136 (192)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987643
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=6.7e-22 Score=133.69 Aligned_cols=80 Identities=13% Similarity=0.279 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCC--eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----eeCCeeEE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGT--IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY----LLFEHILQ 126 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~----~l~g~~i~ 126 (192)
-.+|||+|||+++|+++|+++|++||. +.+|++++|+.||.++|||||+|.+.++|..|++.|||. .|+|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 679999999999999999999999999999999999996 58999999
Q ss_pred EEEcCC
Q 042948 127 VHLIPP 132 (192)
Q Consensus 127 v~~a~~ 132 (192)
|.+|++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999875
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=131.24 Aligned_cols=87 Identities=26% Similarity=0.447 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887543
No 15
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=4.3e-21 Score=129.68 Aligned_cols=83 Identities=27% Similarity=0.480 Sum_probs=79.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
+++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred CCC
Q 042948 133 EHV 135 (192)
Q Consensus 133 ~~~ 135 (192)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 753
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=128.63 Aligned_cols=85 Identities=26% Similarity=0.496 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
..+++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..+.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 042948 131 PPEHV 135 (192)
Q Consensus 131 ~~~~~ 135 (192)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 88654
No 17
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=132.25 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=81.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=7.9e-21 Score=132.48 Aligned_cols=87 Identities=25% Similarity=0.462 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9887543
No 19
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=131.48 Aligned_cols=85 Identities=16% Similarity=0.346 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-21 Score=128.18 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..++|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCC
Q 042948 130 IPP 132 (192)
Q Consensus 130 a~~ 132 (192)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 21
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=129.45 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR--------LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
+.+..++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|..|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4566789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCeeEEEEEcC
Q 042948 121 FEHILQVHLIP 131 (192)
Q Consensus 121 ~g~~i~v~~a~ 131 (192)
.|+.|.|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=130.90 Aligned_cols=87 Identities=30% Similarity=0.503 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=8e-22 Score=131.84 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFG--TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=129.58 Aligned_cols=86 Identities=28% Similarity=0.450 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRL-RIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...++|||+|||..+++++|+++|++||.|..+ .++.++.+|.++|||||+|.+.++|..|+..|||..++|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887643
No 25
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=130.39 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=81.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC------CceeCCe
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH------GYLLFEH 123 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln------g~~l~g~ 123 (192)
....++|||+|||+++++++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+..|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred eEEEEEcCCCCCC
Q 042948 124 ILQVHLIPPEHVH 136 (192)
Q Consensus 124 ~i~v~~a~~~~~~ 136 (192)
.|.|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999987544
No 26
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=129.67 Aligned_cols=85 Identities=26% Similarity=0.503 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98753
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=127.45 Aligned_cols=82 Identities=24% Similarity=0.470 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
.+..++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|++.|||..|+|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45578999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=6.4e-21 Score=131.89 Aligned_cols=85 Identities=20% Similarity=0.367 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.++.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98764
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=7.3e-21 Score=130.69 Aligned_cols=88 Identities=27% Similarity=0.447 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee---CCeeE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL---FEHIL 125 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l---~g~~i 125 (192)
.....++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999987 89999
Q ss_pred EEEEcCCCCCC
Q 042948 126 QVHLIPPEHVH 136 (192)
Q Consensus 126 ~v~~a~~~~~~ 136 (192)
.|.++.+....
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987543
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.7e-20 Score=128.68 Aligned_cols=85 Identities=24% Similarity=0.416 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC---eeEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE---HILQV 127 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g---~~i~v 127 (192)
...++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..+.| ++|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 89999999999999999999999999999988 99999
Q ss_pred EEcCCCCCC
Q 042948 128 HLIPPEHVH 136 (192)
Q Consensus 128 ~~a~~~~~~ 136 (192)
.++.+...+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999987644
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=130.10 Aligned_cols=88 Identities=23% Similarity=0.436 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEec-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCceeCCeeEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN-KKTGKSKHFGFIEFSDPDVAEVVADAM-HGYLLFEHILQ 126 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~-~~tg~~~g~afV~f~~~~~a~~al~~l-ng~~l~g~~i~ 126 (192)
.....++|||+|||..+++++|+++|++||.|..|.++.+ +.++.++|||||+|.+.++|..|+..| ||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 789999999999999999999999999 99999999999
Q ss_pred EEEcCCCCCC
Q 042948 127 VHLIPPEHVH 136 (192)
Q Consensus 127 v~~a~~~~~~ 136 (192)
|.++.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999987543
No 32
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=1e-21 Score=133.89 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCC------CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-ee
Q 042948 52 KAAVLYIGRIPR------WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE-HI 124 (192)
Q Consensus 52 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g-~~ 124 (192)
.+++|||+|||. .+++++|+++|++||.|..|.++.++.||.++|||||+|.+.++|..|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999899999999999999999999999999999999 99
Q ss_pred EEEEEcCCC
Q 042948 125 LQVHLIPPE 133 (192)
Q Consensus 125 i~v~~a~~~ 133 (192)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998763
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.6e-21 Score=129.71 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..+.++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=128.99 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||+.+++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.++..+
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99987644
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.3e-20 Score=129.54 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999998 89999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.+..
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 36
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=125.95 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCC-cccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGK-SKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~-~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.+++|||+|||.++++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987666 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 37
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.3e-20 Score=127.69 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|++|| |..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45578999999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9987543
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=128.76 Aligned_cols=85 Identities=20% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT-GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
....++|||+|||+++++++|+++|++|| |..|.++.++.+ |.++|||||+|.+.++|..|| .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45578999999999999999999999999 999999999877 999999999999999999999 999999999999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987644
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=9.7e-21 Score=128.27 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKK---TGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~---tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
.+.++|||+|||+++++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3468999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EEcCCCCC
Q 042948 128 HLIPPEHV 135 (192)
Q Consensus 128 ~~a~~~~~ 135 (192)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99988654
No 40
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=127.72 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCee-EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee----E
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR-RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI----L 125 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~----i 125 (192)
...++|||+|||+++++++|+++|++||.|. .|.++.++.+|.++|||||+|.+.++|..|+..|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999989999999999999999999999999999999999 9
Q ss_pred EEEEcCCCC
Q 042948 126 QVHLIPPEH 134 (192)
Q Consensus 126 ~v~~a~~~~ 134 (192)
.|.++.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998764
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=130.84 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCee--------EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR--------RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF 121 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~ 121 (192)
....++|||+|||+.+++++|+++|++||.|. .|.++.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 6999999889999999999999999999999999999999
Q ss_pred CeeEEEEEcCCCCC
Q 042948 122 EHILQVHLIPPEHV 135 (192)
Q Consensus 122 g~~i~v~~a~~~~~ 135 (192)
|+.|.|.++.+...
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999988754
No 42
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=130.38 Aligned_cols=84 Identities=29% Similarity=0.475 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||.++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 042948 131 PPEHV 135 (192)
Q Consensus 131 ~~~~~ 135 (192)
.+...
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=8.7e-21 Score=135.19 Aligned_cols=86 Identities=19% Similarity=0.332 Sum_probs=81.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.+++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998765
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=3.6e-20 Score=129.64 Aligned_cols=83 Identities=30% Similarity=0.519 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++.|||..|+|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcC
Q 042948 129 LIP 131 (192)
Q Consensus 129 ~a~ 131 (192)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 45
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=5.1e-20 Score=132.46 Aligned_cols=87 Identities=22% Similarity=0.466 Sum_probs=82.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+...+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=3e-20 Score=123.15 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999899999999999999999999995 588899999999987
Q ss_pred c
Q 042948 130 I 130 (192)
Q Consensus 130 a 130 (192)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=2.4e-20 Score=124.02 Aligned_cols=80 Identities=26% Similarity=0.413 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+ .|||..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 9999999999999999987
Q ss_pred C
Q 042948 133 E 133 (192)
Q Consensus 133 ~ 133 (192)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 48
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=138.35 Aligned_cols=83 Identities=18% Similarity=0.404 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFG--TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
...++|||+|||+++++++|+++|+.|| .|..|.++.|+.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EcCCC
Q 042948 129 LIPPE 133 (192)
Q Consensus 129 ~a~~~ 133 (192)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99764
No 49
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=3.4e-20 Score=127.52 Aligned_cols=81 Identities=16% Similarity=0.316 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=128.29 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc-cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce-eCCeeEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQ-FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYL-LFEHILQV 127 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~-l~g~~i~v 127 (192)
....++|||+|||+++++++|+++|++ ||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||.. ++|++|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345689999999999999999999999 9999999999999 99999999999999999999999999999 99999999
Q ss_pred EEcCCCCCC
Q 042948 128 HLIPPEHVH 136 (192)
Q Consensus 128 ~~a~~~~~~ 136 (192)
.++.+....
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999876544
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.9e-20 Score=125.06 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMH----AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
....++|||+|||+.+++++|+ ++|++||.|..|.++.++.+ +|||||+|.+.++|..|+..|||..++|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4457899999999999999999 99999999999999998754 8899999999999999999999999999999
Q ss_pred EEEEcCCCCC
Q 042948 126 QVHLIPPEHV 135 (192)
Q Consensus 126 ~v~~a~~~~~ 135 (192)
.|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987653
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=125.10 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3456899999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred cCC
Q 042948 130 IPP 132 (192)
Q Consensus 130 a~~ 132 (192)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 53
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-21 Score=130.52 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 042948 131 PPEHV 135 (192)
Q Consensus 131 ~~~~~ 135 (192)
.+...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 88653
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.9e-20 Score=124.63 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||+++++++|+++|++||.|..|.++.+.. .++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345679999999999999999999999999999999999863 389999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99987543
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.8e-20 Score=124.43 Aligned_cols=84 Identities=20% Similarity=0.354 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 455789999999999999999999999999999999998633 689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 998654
No 56
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=2.9e-20 Score=128.64 Aligned_cols=86 Identities=20% Similarity=0.370 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..+ +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 455789999999999999999999999999999999999989999999999999999999999875 5999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987543
No 57
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=128.97 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||+++|+++|+++|++||.|..|.++.++. |.++|||||+|.+.++|..|+. +||..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4468999999999999999999999999999999999985 9999999999999999999998 8999999999999986
Q ss_pred CC
Q 042948 131 PP 132 (192)
Q Consensus 131 ~~ 132 (192)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 58
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=9e-21 Score=136.13 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=82.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
......++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 042948 128 HLIPPEHVH 136 (192)
Q Consensus 128 ~~a~~~~~~ 136 (192)
.++.+....
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999886543
No 59
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=125.43 Aligned_cols=86 Identities=21% Similarity=0.303 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|.+||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865433
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=5.7e-20 Score=122.96 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|++||.|..+.++.+ +|.++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 355789999999999999999999999999999999984 889999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 988653
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=127.29 Aligned_cols=86 Identities=22% Similarity=0.444 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9887543
No 62
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=3e-20 Score=131.53 Aligned_cols=87 Identities=16% Similarity=0.327 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 63
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=2.4e-19 Score=126.62 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=81.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
....+++|||+|||..+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99886543
No 64
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=6.5e-20 Score=134.58 Aligned_cols=87 Identities=24% Similarity=0.359 Sum_probs=81.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9986543
No 65
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=1.1e-19 Score=133.34 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|..||..||+..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987654
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=121.56 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|+.| .|..|.++.+ .+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 599999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98763
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=125.95 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 68
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=124.96 Aligned_cols=83 Identities=24% Similarity=0.445 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee--------C
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL--------F 121 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l--------~ 121 (192)
....++|||+|||+++++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999 6
Q ss_pred CeeEEEEEcCCC
Q 042948 122 EHILQVHLIPPE 133 (192)
Q Consensus 122 g~~i~v~~a~~~ 133 (192)
+++|.|.++.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 888999999865
No 69
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=134.04 Aligned_cols=85 Identities=12% Similarity=0.223 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE--EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR--LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY----LLFEH 123 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~----~l~g~ 123 (192)
....++|||+|||+++++++|+++|++||.|.. |+++.++.+|.++|||||+|.+. +|..|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 455789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEEcCCCCC
Q 042948 124 ILQVHLIPPEHV 135 (192)
Q Consensus 124 ~i~v~~a~~~~~ 135 (192)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999988653
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=2.1e-20 Score=125.79 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
+..++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CC
Q 042948 131 PP 132 (192)
Q Consensus 131 ~~ 132 (192)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 71
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=122.59 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|..|+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4557899999999999999999999999999999999998899999999999999999999997 57899999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988654
No 72
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=2e-20 Score=132.05 Aligned_cols=83 Identities=22% Similarity=0.385 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
.+..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.6e-20 Score=121.03 Aligned_cols=75 Identities=20% Similarity=0.453 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++ |||..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 9999999999999875
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=128.74 Aligned_cols=82 Identities=20% Similarity=0.410 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 44689999999999999999999999999999999999988999999999999999999999 99999999999999998
Q ss_pred CCC
Q 042948 131 PPE 133 (192)
Q Consensus 131 ~~~ 133 (192)
.+.
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.5e-21 Score=125.03 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.++++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999998876654
No 76
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-21 Score=129.24 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|..|++ |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 445789999999999999999999999999887 666776689999999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 988654
No 77
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=128.84 Aligned_cols=85 Identities=16% Similarity=0.310 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||..+++++|+++|.+||.|..|.++.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4468999999999999999999999999999999999988999999999999999999999987 999999999999999
Q ss_pred CCCCCC
Q 042948 131 PPEHVH 136 (192)
Q Consensus 131 ~~~~~~ 136 (192)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987543
No 78
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=125.85 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG--YLLFEHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng--~~l~g~~i~v~ 128 (192)
...++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|++.|++ ..|.|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999999865 58999999999999999998864 78999999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99887544
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=127.69 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNK-KTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~-~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+....++|||+|||.++++++|+++|+.|| |..|.++.++ .+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 9999999998 58999999999999999999999 89999999999999
Q ss_pred EEcCCCC
Q 042948 128 HLIPPEH 134 (192)
Q Consensus 128 ~~a~~~~ 134 (192)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998753
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1.2e-19 Score=134.35 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|.|++|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987654
No 81
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=125.09 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 042948 51 NKAAVLYIGRIPRWF------YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEH- 123 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~- 123 (192)
...++|||+|||+.+ ++++|+++|++||.|..|.++ +.+|.++|||||+|.+.++|..|+..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 446899999999999 889999999999999999988 35899999999999999999999999999999998
Q ss_pred eEEEEEcCCC
Q 042948 124 ILQVHLIPPE 133 (192)
Q Consensus 124 ~i~v~~a~~~ 133 (192)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=126.00 Aligned_cols=85 Identities=19% Similarity=0.314 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEE-ecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CceeCCeeEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGT-IRRLRIA-RNKKTGKSKHFGFIEFSDPDVAEVVADAMH--GYLLFEHILQ 126 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~-~~~~tg~~~g~afV~f~~~~~a~~al~~ln--g~~l~g~~i~ 126 (192)
.+.++|||+|||+++++++|+++|.+||. |..+.++ .++.+|.++|||||+|.+.++|..|+..|| +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34689999999999999999999999998 9999998 888889999999999999999999999996 5899999999
Q ss_pred EEEcCCCCC
Q 042948 127 VHLIPPEHV 135 (192)
Q Consensus 127 v~~a~~~~~ 135 (192)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998754
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-19 Score=121.49 Aligned_cols=84 Identities=25% Similarity=0.412 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|..|++.||+..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999998654 45789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9887543
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=125.67 Aligned_cols=83 Identities=25% Similarity=0.440 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||.++++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|..|+..|||..++|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999885 3489999999999999999999999999999999999
Q ss_pred EcCCC
Q 042948 129 LIPPE 133 (192)
Q Consensus 129 ~a~~~ 133 (192)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 85
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=1.1e-20 Score=126.02 Aligned_cols=81 Identities=20% Similarity=0.416 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.+ |..|+..|||..++|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred CC
Q 042948 134 HV 135 (192)
Q Consensus 134 ~~ 135 (192)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=129.55 Aligned_cols=82 Identities=30% Similarity=0.487 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred Ec
Q 042948 129 LI 130 (192)
Q Consensus 129 ~a 130 (192)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 87
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.3e-19 Score=119.45 Aligned_cols=74 Identities=8% Similarity=0.119 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|..|++.|||..+.|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999865 57999999999999999999999999999999999983
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=125.89 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeeEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG--YLLFEHILQ 126 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng--~~l~g~~i~ 126 (192)
..+++++|||+|||+++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|++ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 68999999999999999998884 689999999
Q ss_pred EEEcCCCCCC
Q 042948 127 VHLIPPEHVH 136 (192)
Q Consensus 127 v~~a~~~~~~ 136 (192)
|.++.++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 89
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3e-20 Score=120.22 Aligned_cols=76 Identities=21% Similarity=0.406 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..++ ..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999986
No 90
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=126.92 Aligned_cols=83 Identities=11% Similarity=0.265 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCcHHHHH---HHHhccCCeeEEEEEecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 52 KAAVLYIGRIPRWFYEKEMH---AFFSQFGTIRRLRIARNKKTG---KSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~~~~~~~tg---~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
..++|||+|||+.+++++|+ ++|++||.|..|.++.+..++ .++|||||+|.+.++|..|++.|||..|+|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35789999999999999999 999999999999999987654 566999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 042948 126 QVHLIPPEH 134 (192)
Q Consensus 126 ~v~~a~~~~ 134 (192)
.|.++.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998875
No 91
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.9e-20 Score=127.56 Aligned_cols=87 Identities=21% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999984332222222788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987644
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=120.83 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CceeCCeeEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH--GYLLFEHILQV 127 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln--g~~l~g~~i~v 127 (192)
.++.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|+ +..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 455789999999999999999999999999999988764 6899999999999999999774 67899999999
Q ss_pred EEcCCCCCC
Q 042948 128 HLIPPEHVH 136 (192)
Q Consensus 128 ~~a~~~~~~ 136 (192)
.++.++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999987544
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=128.38 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 48 PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
.+....++|||+|||+++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999999886666666699999999999999999999998 9999999999999
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
.++.++
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998764
No 94
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=122.86 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR-LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
....++|||+|||+++++++|+++|.+||.|.. |.++.+ .+|+++|||||+|.+.++|..||.. |+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 455789999999999999999999999999987 888888 5999999999999999999999987 9999999999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.+..
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 95
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=120.95 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce--eCCeeEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYL--LFEHILQV 127 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~--l~g~~i~v 127 (192)
.+++++|||+|||+.+++++|+++|++||.|.++.++++ +|||||+|.+.++|..|+..||+.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456789999999999999999999999999999998753 6899999999999999999999875 78999999
Q ss_pred EEcCCCC
Q 042948 128 HLIPPEH 134 (192)
Q Consensus 128 ~~a~~~~ 134 (192)
.+++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998754
No 96
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=127.08 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMH----AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 446899999999999999876 6999999999987743 678899999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 042948 127 VHLIPPEH 134 (192)
Q Consensus 127 v~~a~~~~ 134 (192)
|.++.++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998765
No 97
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=3e-19 Score=125.25 Aligned_cols=82 Identities=11% Similarity=0.169 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGT---IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
....++|||+|||+++++++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 455789999999999999999999999999 89999999985 9999999999999999999998 999999999999
Q ss_pred EEEcCCC
Q 042948 127 VHLIPPE 133 (192)
Q Consensus 127 v~~a~~~ 133 (192)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 98
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=126.30 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCe-eEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTI-RRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
....++|||+|||+++++++|+++|+.||.| ..|.++.++ +|.++|||||+|.+.++|..||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999998 999999999999999999999976 9999999999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.+..
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=120.16 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3457899999999999999999999999977 56666 4899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988653
No 100
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=121.64 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||+++++++|+++|++||.+ .|.++.++ +|+++|||||+|.+.++|..|| .+|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 446899999999999999999999999954 99999998 9999999999999999999999 57999999999999998
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=116.87 Aligned_cols=79 Identities=27% Similarity=0.460 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3557899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887543
No 102
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.7e-19 Score=129.54 Aligned_cols=83 Identities=11% Similarity=0.143 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGT---IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
+....++|||+|||+++|+++|+++|++||. |..|.++.++. |+++|||||+|.+.++|..||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999985 9999999999999999999998 99999999999
Q ss_pred EEEEcCCC
Q 042948 126 QVHLIPPE 133 (192)
Q Consensus 126 ~v~~a~~~ 133 (192)
.|.++.+.
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998653
No 103
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=119.77 Aligned_cols=84 Identities=21% Similarity=0.337 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999874 678888888999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987543
No 104
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=120.27 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-----ee
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE-----HI 124 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g-----~~ 124 (192)
....++|||+|||+++++++|+++|.+||.|..|.++.+ |||||+|.+.++|..||+.|||..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEEEcCCCCC
Q 042948 125 LQVHLIPPEHV 135 (192)
Q Consensus 125 i~v~~a~~~~~ 135 (192)
|.|.++.++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999998654
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=117.75 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC--CeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF--EHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~--g~~i~v~ 128 (192)
...++|||+|||.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 44689999999999999999999999999999988754 689999999999999999999999999 9999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998864
No 106
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=119.06 Aligned_cols=73 Identities=26% Similarity=0.474 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe-eE
Q 042948 53 AAVLYIGRIPRWF------YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEH-IL 125 (192)
Q Consensus 53 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~-~i 125 (192)
+++|||+|||..+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|..|+..|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 34899999999999999999999999999999999 88
Q ss_pred EE
Q 042948 126 QV 127 (192)
Q Consensus 126 ~v 127 (192)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 107
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.8e-19 Score=128.38 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=89.0
Q ss_pred CCCccCCCCCCCCCCC---CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHH
Q 042948 30 ADFLPLEGGPRRKLPE---EKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~ 106 (192)
+++..+.|+++..... ........++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.+
T Consensus 61 l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 61 LNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp HTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred cCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 4566666666544322 2234556789999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 107 VAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 107 ~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
+|..|+..|||..++|++|.|.+|.+
T Consensus 141 ~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 141 DAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHhCCCccCCcEEEEEecCC
Confidence 99999999999999999999999863
No 108
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=117.92 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999996 666654 5789999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98864
No 109
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=2e-18 Score=117.98 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 446899999999999999999999999999999886 459999999999999999999999999999999999
Q ss_pred CCCCCCcc
Q 042948 131 PPEHVHPK 138 (192)
Q Consensus 131 ~~~~~~~~ 138 (192)
.+......
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 98765443
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=121.38 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--eeCCeeEEE
Q 042948 51 NKAAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY--LLFEHILQV 127 (192)
Q Consensus 51 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~--~l~g~~i~v 127 (192)
.+.++|||+|||+ .+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|++.||+. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999865 379999999999999999999864 599999999
Q ss_pred EEcCCCC
Q 042948 128 HLIPPEH 134 (192)
Q Consensus 128 ~~a~~~~ 134 (192)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998654
No 111
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=119.89 Aligned_cols=81 Identities=22% Similarity=0.229 Sum_probs=73.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|..|+..|||..++|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 2378899999999999999999999999999999999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998764
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2.5e-19 Score=139.45 Aligned_cols=82 Identities=20% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccC--CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFG--TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..++|||+|||+++++++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 113
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=9.1e-20 Score=117.42 Aligned_cols=75 Identities=16% Similarity=0.354 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999997 5999999999999875
No 114
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=3.1e-19 Score=120.50 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMH----AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
.++.++|||+|||.++++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999998873 57788999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 042948 126 QVHLIPPEH 134 (192)
Q Consensus 126 ~v~~a~~~~ 134 (192)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998864
No 115
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=5.1e-19 Score=130.74 Aligned_cols=102 Identities=21% Similarity=0.419 Sum_probs=89.8
Q ss_pred CCCCccCCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHH
Q 042948 29 TADFLPLEGGPRRKLPEEK-PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDV 107 (192)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~ 107 (192)
.+++..+.|++++...... .+....++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 4566777777766554332 234557899999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEc
Q 042948 108 AEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 108 a~~al~~lng~~l~g~~i~v~~a 130 (192)
|..|+..|||..++|++|.|.+|
T Consensus 149 A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 149 TDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999987
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=9e-19 Score=120.94 Aligned_cols=79 Identities=22% Similarity=0.376 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|..|+..|||..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred EcCCCCC
Q 042948 129 LIPPEHV 135 (192)
Q Consensus 129 ~a~~~~~ 135 (192)
++.+...
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9988654
No 117
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=119.98 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 455789999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 988754
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=9.2e-19 Score=121.88 Aligned_cols=82 Identities=21% Similarity=0.396 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+++|||+|||..+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999865 44589999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98754
No 119
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1e-19 Score=125.41 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCC---eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGT---IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
.....++|||+|||+++++++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|..||. +|+..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999998 89999999985 9999999999999999999998 99999999999
Q ss_pred EEEEcCCC
Q 042948 126 QVHLIPPE 133 (192)
Q Consensus 126 ~v~~a~~~ 133 (192)
.|.++.+.
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998764
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=119.40 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc--eeCCeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY--LLFEHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~--~l~g~~i~v~ 128 (192)
++.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..||+. .+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999998754 689999999999999999988764 5899999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876543
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=6.9e-19 Score=122.09 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...++|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|..|++.|||..|+|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 8999888532 4789999999999999999999999999999999999
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 122
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-18 Score=114.47 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||..+++++|+++|++||.|..|.+++ +||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999873 4999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 988754
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=2.4e-18 Score=116.51 Aligned_cols=77 Identities=22% Similarity=0.443 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 49 LVNKAAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+.+..++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|||..++|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 356689999999998 99999999999999999999883 689999999999999999999999999999999
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
.++.+.
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998865
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=8e-19 Score=119.43 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||.++++++|+++|++||.|..+.+. .++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 446899999999999999999999999999999987 34789999999999999999999999999999999998
Q ss_pred CCC
Q 042948 131 PPE 133 (192)
Q Consensus 131 ~~~ 133 (192)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 125
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=113.71 Aligned_cols=76 Identities=25% Similarity=0.437 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCceeCCeeEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM-HGYLLFEHILQVH 128 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l-ng~~l~g~~i~v~ 128 (192)
....++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..| ||..++|++|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345689999999999999999999999999999999864 689999999999999999989 9999999999999
Q ss_pred EcC
Q 042948 129 LIP 131 (192)
Q Consensus 129 ~a~ 131 (192)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=117.90 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
..+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|+..|||..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345689999999999999999999999999999999854 68999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98864
No 127
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=4.4e-18 Score=117.62 Aligned_cols=78 Identities=15% Similarity=0.352 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 49 LVNKAAVLYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+....++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|..|+..|||..|+|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 4789999999999999999999999999999999
Q ss_pred EEcCCCC
Q 042948 128 HLIPPEH 134 (192)
Q Consensus 128 ~~a~~~~ 134 (192)
.++.+..
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998654
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=2e-18 Score=132.63 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.+.++|||+|||+++++++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|..|+..+|+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7654
No 129
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=8.9e-19 Score=119.21 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..++|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 6799999999999999999999999999999999999886
Q ss_pred CC
Q 042948 134 HV 135 (192)
Q Consensus 134 ~~ 135 (192)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=114.46 Aligned_cols=79 Identities=11% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999873 4999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887543
No 131
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=120.80 Aligned_cols=79 Identities=13% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
....+|||+|||+++++++|+++|+.| .|..|.|+.++ +|+++|||||+|.+.++|..|| .+|+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999998 5999999999999999999999 69999999999999887
Q ss_pred CC
Q 042948 131 PP 132 (192)
Q Consensus 131 ~~ 132 (192)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-20 Score=130.84 Aligned_cols=87 Identities=17% Similarity=0.301 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeE--------EEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR--------LRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF 121 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~ 121 (192)
..+.++|||+|||..+++++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|..|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeeEEEEEcCCCCCC
Q 042948 122 EHILQVHLIPPEHVH 136 (192)
Q Consensus 122 g~~i~v~~a~~~~~~ 136 (192)
|++|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887543
No 133
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=4.4e-19 Score=120.95 Aligned_cols=81 Identities=20% Similarity=0.439 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||+++++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999998 99999999999999999999997 999999999999998
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=2.6e-18 Score=125.15 Aligned_cols=81 Identities=26% Similarity=0.413 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.....++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..|+|++|.|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999876 47999999999999999999999999999999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998763
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=4.3e-18 Score=124.78 Aligned_cols=82 Identities=26% Similarity=0.525 Sum_probs=78.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred CC
Q 042948 133 EH 134 (192)
Q Consensus 133 ~~ 134 (192)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 136
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=122.34 Aligned_cols=80 Identities=11% Similarity=0.208 Sum_probs=72.5
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCce
Q 042948 54 AVLYIGRI----PRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD----PDV----AEVVAD--AMHGYL 119 (192)
Q Consensus 54 ~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~----~~~----a~~al~--~lng~~ 119 (192)
..|||+|| |+.+++.+|+.+|++||+|.+|.++.|+.||.++|||||+|.+ .+. |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred eCCeeEEEEEcCCC
Q 042948 120 LFEHILQVHLIPPE 133 (192)
Q Consensus 120 l~g~~i~v~~a~~~ 133 (192)
|+|++|.|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987654
No 137
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=1.9e-18 Score=130.37 Aligned_cols=84 Identities=23% Similarity=0.503 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8864
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-17 Score=113.50 Aligned_cols=78 Identities=21% Similarity=0.384 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcc--CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQF--GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
....++|||+|||+.+++++|+++|++| |.|..+.++ +|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4557899999999999999999999999 889988764 579999999999999999999999999999999
Q ss_pred EEcCCCCC
Q 042948 128 HLIPPEHV 135 (192)
Q Consensus 128 ~~a~~~~~ 135 (192)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99988653
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=128.80 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEE--E---EecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLR--I---ARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--~---~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
....++|||+|||+.+++++|+.+|++||.|..+. + +....+|.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568999999999999999999999999987641 0 111237889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCC
Q 042948 125 LQVHLIPPEHVH 136 (192)
Q Consensus 125 i~v~~a~~~~~~ 136 (192)
|.|.++.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 140
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=3.6e-18 Score=130.57 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=90.0
Q ss_pred CCCccCCCCCCCCCCCCCC------------CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccE
Q 042948 30 ADFLPLEGGPRRKLPEEKP------------LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHF 97 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~------------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~ 97 (192)
+++..+.|+++.+...... .....++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++||
T Consensus 90 l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 169 (216)
T 2qfj_A 90 MNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGY 169 (216)
T ss_dssp HSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEE
T ss_pred ccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCce
Confidence 4566677776655433221 1245689999999999999999999999999999999999889999999
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCCC
Q 042948 98 GFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEH 134 (192)
Q Consensus 98 afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~~ 134 (192)
|||+|.+.++|..|+..|||..|+|+.|.|.++.+..
T Consensus 170 afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 170 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999999999999998864
No 141
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=3.2e-18 Score=125.87 Aligned_cols=84 Identities=24% Similarity=0.401 Sum_probs=79.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7653
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=2.2e-18 Score=129.06 Aligned_cols=84 Identities=17% Similarity=0.312 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...+++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.+..
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98754
No 143
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=118.98 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--ceeCCeeEE
Q 042948 50 VNKAAVLYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG--YLLFEHILQ 126 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng--~~l~g~~i~ 126 (192)
..++++|||+|||++ +++++|+++|++||.|.+|.+++ ++|||||+|.+.++|..|+..||+ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 368999999999999999998864 569999999
Q ss_pred EEEcCCCC
Q 042948 127 VHLIPPEH 134 (192)
Q Consensus 127 v~~a~~~~ 134 (192)
|.++....
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99998764
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.5e-18 Score=116.06 Aligned_cols=78 Identities=22% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 50 VNKAAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 50 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
.++.++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..|||..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999884 6899999999999999999999999999999999
Q ss_pred EcCCCCC
Q 042948 129 LIPPEHV 135 (192)
Q Consensus 129 ~a~~~~~ 135 (192)
++.+...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9987643
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=120.83 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|..|+..|||..+.|++|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998874 46899999999999999999999999999999999987
Q ss_pred CC
Q 042948 132 PE 133 (192)
Q Consensus 132 ~~ 133 (192)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=114.98 Aligned_cols=79 Identities=15% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCC-eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-ceeCCeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGT-IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHG-YLLFEHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng-~~l~g~~i~v~ 128 (192)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|..|+..||| ..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 6666553 468999999999999999999999 99999999999
Q ss_pred EcCCCCCC
Q 042948 129 LIPPEHVH 136 (192)
Q Consensus 129 ~a~~~~~~ 136 (192)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99987543
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=114.64 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEE-EEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRL-RIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
...++|||+|||+++++++|+++|++||.|..| .++.++.+| .|||+|.+.++|..|+..|||..|+|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 588876544 399999999999999999999999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98863
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=3.4e-18 Score=125.66 Aligned_cols=101 Identities=19% Similarity=0.329 Sum_probs=87.7
Q ss_pred CCCccCCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHH
Q 042948 30 ADFLPLEGGPRRKLPEEK-PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a 108 (192)
+++..+.|++++...... ......++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|
T Consensus 65 l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp HTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 466667777665544332 2345678999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCC--eeEEEEEc
Q 042948 109 EVVADAMHGYLLFE--HILQVHLI 130 (192)
Q Consensus 109 ~~al~~lng~~l~g--~~i~v~~a 130 (192)
..|+..|||..+.| ++|.|.+|
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999987 99999886
No 149
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=122.78 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCe----eEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTI----RRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
....+|||+|||+++++++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|..||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999975 689999996 899999999999999999999985 99999999999
Q ss_pred EEEcCCC
Q 042948 127 VHLIPPE 133 (192)
Q Consensus 127 v~~a~~~ 133 (192)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887653
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=5e-18 Score=143.46 Aligned_cols=85 Identities=19% Similarity=0.334 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 042948 131 PPEHV 135 (192)
Q Consensus 131 ~~~~~ 135 (192)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87653
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=1.2e-18 Score=133.79 Aligned_cols=103 Identities=22% Similarity=0.388 Sum_probs=85.3
Q ss_pred CCCccCCCCCCCCCCCCCC---CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHH
Q 042948 30 ADFLPLEGGPRRKLPEEKP---LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~---~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~ 106 (192)
+++..+.|++++....... ......+|||+|||+.+++++|+++|+.||.|..|.++.+. +.++|||||+|.+.+
T Consensus 77 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 154 (213)
T ss_dssp HTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHH
T ss_pred hhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHH
Confidence 3455556665554333221 23356789999999999999999999999999999999985 447999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEcCCCC
Q 042948 107 VAEVVADAMHGYLLFEHILQVHLIPPEH 134 (192)
Q Consensus 107 ~a~~al~~lng~~l~g~~i~v~~a~~~~ 134 (192)
+|..|++.|||..|+|++|.|.++.++.
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999998753
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-18 Score=112.62 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||+++++++|+++|++||.|..| +.++.+|. ||||+|.+.++|..|+. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 66665665 99999999999999999 99999999999999887
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6543
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=6.5e-19 Score=126.89 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|++|| |..|.|+.++ +|+++|||||+|.+.++|..|| .+|+..|+|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 6799999998 4999999999999999999999 7899999999999999
Q ss_pred cCCCCCC
Q 042948 130 IPPEHVH 136 (192)
Q Consensus 130 a~~~~~~ 136 (192)
+.+....
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8876543
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=1.1e-17 Score=126.09 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 44578999999999999999999999999999999999998999999999999999999999975 99999999999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.5e-18 Score=124.56 Aligned_cols=80 Identities=20% Similarity=0.447 Sum_probs=75.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
++|||+|||.++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 6889999999999999999999999999999999999998766
Q ss_pred C
Q 042948 134 H 134 (192)
Q Consensus 134 ~ 134 (192)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=7.4e-18 Score=126.94 Aligned_cols=85 Identities=20% Similarity=0.356 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||+++++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|..|+.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988999999999999999999999976 899999999999999
Q ss_pred CCCCCC
Q 042948 131 PPEHVH 136 (192)
Q Consensus 131 ~~~~~~ 136 (192)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 987643
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=6.6e-18 Score=123.78 Aligned_cols=101 Identities=26% Similarity=0.342 Sum_probs=86.1
Q ss_pred CCCccCCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHH
Q 042948 30 ADFLPLEGGPRRKLPEEK-PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a 108 (192)
+++..+.|++++...... ......++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|
T Consensus 64 l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 64 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp HTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 466667777665544332 2344578999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhCCceeCCee--EEEEEc
Q 042948 109 EVVADAMHGYLLFEHI--LQVHLI 130 (192)
Q Consensus 109 ~~al~~lng~~l~g~~--i~v~~a 130 (192)
..|+..|||..+.|+. |.|.+|
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 777775
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-17 Score=110.82 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|++|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 89999999999999999999884 45789999999999999999999999999999999999
Q ss_pred CCCCCC
Q 042948 131 PPEHVH 136 (192)
Q Consensus 131 ~~~~~~ 136 (192)
.+....
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 886543
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=4.8e-18 Score=124.85 Aligned_cols=99 Identities=24% Similarity=0.379 Sum_probs=84.8
Q ss_pred cCCCCCCCCCCCCC-CCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHH
Q 042948 34 PLEGGPRRKLPEEK-PLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVA 112 (192)
Q Consensus 34 ~l~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 112 (192)
.+.|+++....... ......++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+
T Consensus 67 ~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 146 (167)
T 2cjk_A 67 ILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 146 (167)
T ss_dssp EETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHH
T ss_pred ccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 34555554443322 12334679999999999999999999999999999999999889999999999999999999999
Q ss_pred HHhCCceeCCeeEEEEEcCCC
Q 042948 113 DAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 113 ~~lng~~l~g~~i~v~~a~~~ 133 (192)
+ +||..++|++|.|.++.++
T Consensus 147 ~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 147 Q-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp H-CSEECSSSSCEEEEECCCC
T ss_pred h-CCCEEeCCeEEEEeecCCC
Confidence 7 8999999999999999875
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=1e-17 Score=111.19 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.+.++|..|+..|||..++|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 468999999999999999999999999999999999987
Q ss_pred CCC
Q 042948 132 PEH 134 (192)
Q Consensus 132 ~~~ 134 (192)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=5.3e-18 Score=120.06 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCee--EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIR--RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
....++|||+|||+++++++|+++|+.| .|. .|.|+.++. |+++|||||+|.+.++|.+||. +++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3557899999999999999999999999 666 899999985 9999999999999999999997 5889999999999
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
..+.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987643
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=3e-17 Score=120.67 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC--eeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE--HILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g--~~i~v~ 128 (192)
....+|||+||++.+++++|+++|++||.|.+|.+..+. ++|||||+|.+.++|..|++.|||..|.| +.|.|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 334679999999999999999999999999999987543 57899999999999999999999999965 999999
Q ss_pred EcCCCC
Q 042948 129 LIPPEH 134 (192)
Q Consensus 129 ~a~~~~ 134 (192)
++++..
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999864
No 163
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=2.2e-17 Score=110.08 Aligned_cols=77 Identities=22% Similarity=0.450 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce--eCCeeEE
Q 042948 49 LVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYL--LFEHILQ 126 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~--l~g~~i~ 126 (192)
+.....+|||+|||+++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.. ++|.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999875 68999999999999883 56655 4699999
Q ss_pred EEEcCCCC
Q 042948 127 VHLIPPEH 134 (192)
Q Consensus 127 v~~a~~~~ 134 (192)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=115.85 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=69.4
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee-----CCe
Q 042948 51 NKAAVLYI--GRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL-----FEH 123 (192)
Q Consensus 51 ~~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l-----~g~ 123 (192)
.+.++||| |||++++++++|+++|++||.|..|.++.+ +|||||+|.+.++|..|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 789999999999999999999999887632 68999999999999999999999988 789
Q ss_pred eEEEEEcCCC
Q 042948 124 ILQVHLIPPE 133 (192)
Q Consensus 124 ~i~v~~a~~~ 133 (192)
+|.|.++..-
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998754
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=116.58 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKT---GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|..||+.|++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4468999999999999999999999999999 888888766 79999999999999999999999853 77888877
Q ss_pred EEcCCC
Q 042948 128 HLIPPE 133 (192)
Q Consensus 128 ~~a~~~ 133 (192)
..+.+.
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765543
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=7.6e-17 Score=114.38 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=70.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCceeCC--eeEEEEE
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHF-GFIEFSDPDVAEVVADAMHGYLLFE--HILQVHL 129 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~-afV~f~~~~~a~~al~~lng~~l~g--~~i~v~~ 129 (192)
--.|||+||++.+|+++|+++|++||.|.+|.+.... +|| |||+|.+.++|..|++.|||..|.| +.|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 4578899999999999999999999999999887643 577 9999999999999999999999988 8999999
Q ss_pred cCCCC
Q 042948 130 IPPEH 134 (192)
Q Consensus 130 a~~~~ 134 (192)
+++..
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98864
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=1.1e-17 Score=133.35 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=90.0
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHH
Q 042948 30 ADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE 109 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~ 109 (192)
+++..+.|+++.+.. .+..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.
T Consensus 77 l~~~~~~g~~i~v~~-----~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 77 FHQSRLRERELSVQL-----QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp HTTCEETTEECEEEE-----CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cCCCeeCCeEEEEEe-----cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 455666676665543 234679999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEcCCCCCC
Q 042948 110 VVADAMHGYLLFEHILQVHLIPPEHVH 136 (192)
Q Consensus 110 ~al~~lng~~l~g~~i~v~~a~~~~~~ 136 (192)
.|+..|||..++|++|.|.++.+....
T Consensus 152 ~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 152 RAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 999999999999999999999876543
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.1e-17 Score=123.95 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=83.2
Q ss_pred CCCccCCCCCCCCCCCC---CCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHH
Q 042948 30 ADFLPLEGGPRRKLPEE---KPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPD 106 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~ 106 (192)
+++..+.|+++++.... .......++|||+|||..+++++|+++|++||.|..+ ..+|.++|||||+|.+.+
T Consensus 73 l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 73 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHH
T ss_pred cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHH
Confidence 46666677766544332 2234567899999999999999999999999988665 448899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 107 VAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 107 ~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
+|..|+..|||..++|+.|.|.++.++
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999875
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=108.79 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=65.7
Q ss_pred CcE-EEEcCCCCCCcHHH----HHHHHhcc-CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 53 AAV-LYIGRIPRWFYEKE----MHAFFSQF-GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 53 ~~~-l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
..+ |||+|||..+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|||..+.|++|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 55899999 599888 44 9999999999999999999999999999999
Q ss_pred EEEcCCCCC
Q 042948 127 VHLIPPEHV 135 (192)
Q Consensus 127 v~~a~~~~~ 135 (192)
|.+|...+.
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999998753
No 170
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=1.4e-17 Score=116.08 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee-----E
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI-----L 125 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~-----i 125 (192)
...++|||+|||+++++++|+++|.+||.|..|.++.+ |||||+|.+.++|..||+.|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34689999999999999999999999999999999765 89999999999999999999999999998 7
Q ss_pred EEEEcCCCC
Q 042948 126 QVHLIPPEH 134 (192)
Q Consensus 126 ~v~~a~~~~ 134 (192)
.|..+.+..
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 888777654
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-16 Score=112.27 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCceeCC--eeEEEEEc
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHF-GFIEFSDPDVAEVVADAMHGYLLFE--HILQVHLI 130 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~-afV~f~~~~~a~~al~~lng~~l~g--~~i~v~~a 130 (192)
..|||+||++.+++++|+++|++||.|..|.+.. + .|| |||+|.+.++|..|++.|||..|.| ++|.|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999999999999999999999999865 2 276 9999999999999999999999987 68999999
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
.+..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8875
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=5.4e-17 Score=124.21 Aligned_cols=77 Identities=12% Similarity=0.282 Sum_probs=71.8
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 52 KAAVLYIGRIP-RWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 52 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
++++|||+||| ..+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|..|++.|||..+.|++|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 899999999999999999999998653 799999999999999999999999999999999998
Q ss_pred CCC
Q 042948 131 PPE 133 (192)
Q Consensus 131 ~~~ 133 (192)
...
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=5e-17 Score=124.18 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
...++|||+|||.++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CCCC
Q 042948 131 PPEH 134 (192)
Q Consensus 131 ~~~~ 134 (192)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7653
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=8.3e-17 Score=118.85 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC---CeeEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF---EHILQV 127 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~---g~~i~v 127 (192)
...++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|..|+..|||..+. |++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 456899999999999999999999999999999999997 7999999999999999999999999998775 499999
Q ss_pred EEcC
Q 042948 128 HLIP 131 (192)
Q Consensus 128 ~~a~ 131 (192)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=6.4e-17 Score=106.78 Aligned_cols=71 Identities=30% Similarity=0.541 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQF----G-------TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYL 119 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~ 119 (192)
...++|||+|||+++++++|+++|++| | .|..+.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 8999988754 689999999999999999 999999
Q ss_pred eCCeeEEEE
Q 042948 120 LFEHILQVH 128 (192)
Q Consensus 120 l~g~~i~v~ 128 (192)
++|+.|.|+
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999886
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=2.3e-16 Score=108.29 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHHhccCCeeEEEEEecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 51 NKAAVLYIGRIPR-----WFYEKEMHAFFSQFGTIRRLRIARNKKT-GKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 51 ~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
.++++|+|.||.. +-++++|++.|++||.|.+|.++.++.+ +.++|||||+|.+.++|..|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2368999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEEcCC
Q 042948 125 LQVHLIPP 132 (192)
Q Consensus 125 i~v~~a~~ 132 (192)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=8.8e-17 Score=118.72 Aligned_cols=83 Identities=24% Similarity=0.522 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCceeC---CeeEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTG--KSKHFGFIEFSDPDVAEVVADAMHGYLLF---EHILQ 126 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg--~~~g~afV~f~~~~~a~~al~~lng~~l~---g~~i~ 126 (192)
+.++|||+|||+++++++|+++|++||.|..|.++.++.++ .++|||||+|.+.++|..|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999999998875 67888
Q ss_pred EEEcCCCC
Q 042948 127 VHLIPPEH 134 (192)
Q Consensus 127 v~~a~~~~ 134 (192)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876554
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.4e-16 Score=120.82 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||+++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|..|+..++ ..++|++|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999987 69999999999999999999997654 58999999999876
Q ss_pred C
Q 042948 132 P 132 (192)
Q Consensus 132 ~ 132 (192)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=1.2e-16 Score=112.38 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999886 3578999999999999999999999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987653
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=4.7e-17 Score=130.17 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=84.9
Q ss_pred CCCccCCCCCCCCCCCCC--------CCCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEecCC-CCCcccEEE
Q 042948 30 ADFLPLEGGPRRKLPEEK--------PLVNKAAVLYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKK-TGKSKHFGF 99 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~--------~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~-tg~~~g~af 99 (192)
+++..+.|+++.+..... ......++|||+|||.. +++++|+++|+.||.|..|.++.+.. ||.++||||
T Consensus 179 l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~af 258 (292)
T 2ghp_A 179 LNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAF 258 (292)
T ss_dssp HTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEE
T ss_pred hCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEE
Confidence 455566666554332111 23456789999999999 99999999999999999999999875 599999999
Q ss_pred EEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCC
Q 042948 100 IEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPE 133 (192)
Q Consensus 100 V~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~ 133 (192)
|+|.+.++|..|+ .|||..|+|++|.|.++.++
T Consensus 259 V~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 259 MVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999 99999999999999999875
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=8.5e-17 Score=128.20 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=89.4
Q ss_pred CCCccCCCCCCCCCCCCC----CCCCCCcEEEEcCCCCCC-cHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 30 ADFLPLEGGPRRKLPEEK----PLVNKAAVLYIGRIPRWF-YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
+++..+.|+++....... ......++|||+|||..+ ++++|+++|+.||.|..+.++.+. +|.++|||||+|.+
T Consensus 157 l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~ 235 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYET 235 (284)
T ss_dssp HTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSS
T ss_pred hCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCC
Confidence 455666666654433222 233567899999999995 999999999999999999999997 89999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEcCCCCC
Q 042948 105 PDVAEVVADAMHGYLLFEHILQVHLIPPEHV 135 (192)
Q Consensus 105 ~~~a~~al~~lng~~l~g~~i~v~~a~~~~~ 135 (192)
.++|..|+..|||..++|++|.|.++.+...
T Consensus 236 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999999999988754
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=7.2e-17 Score=118.52 Aligned_cols=80 Identities=24% Similarity=0.534 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
++++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 36899999999999999999999999999999999998899999999999999999999997 4678999999999887
Q ss_pred CC
Q 042948 132 PE 133 (192)
Q Consensus 132 ~~ 133 (192)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 64
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-17 Score=107.30 Aligned_cols=77 Identities=22% Similarity=0.475 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIP 131 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~ 131 (192)
..++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|+.|+. ....+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999865 68999999999999976432 1344589999999998
Q ss_pred CCCC
Q 042948 132 PEHV 135 (192)
Q Consensus 132 ~~~~ 135 (192)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=4.2e-16 Score=124.02 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMH----AFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
....++|||+|||.++++++|+ ++|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3457899999999999999976 8999999999998875 77899999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 042948 126 QVHLIPPEH 134 (192)
Q Consensus 126 ~v~~a~~~~ 134 (192)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=5e-16 Score=120.42 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 48 PLVNKAAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 48 ~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
.+.++.++|||+|||+ ++++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|++.|||..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456689999999999 99999999999999999999999875 78999999999999999999999999999999
Q ss_pred EEEcCCC
Q 042948 127 VHLIPPE 133 (192)
Q Consensus 127 v~~a~~~ 133 (192)
|.++.+.
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9998865
No 186
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=5.8e-16 Score=122.38 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=84.8
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHH
Q 042948 30 ADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAE 109 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~ 109 (192)
+++..+.|+++++... ..+++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.
T Consensus 78 l~g~~i~g~~l~v~~a-----~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 78 LDGTILKSRPLRIRFA-----THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp HTTCEETTEECEEEEC-----CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHH
T ss_pred cCCcEECCceeEeeec-----ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHH
Confidence 4666677777665543 236799999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHHhCC-ceeC---CeeEEEEEcCCCC
Q 042948 110 VVADAMHG-YLLF---EHILQVHLIPPEH 134 (192)
Q Consensus 110 ~al~~lng-~~l~---g~~i~v~~a~~~~ 134 (192)
.|+..||+ ..+. +++|.|.++.+..
T Consensus 152 ~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 152 KALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999954 4444 9999999988754
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=4.7e-16 Score=124.35 Aligned_cols=99 Identities=10% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHH
Q 042948 30 ADFLPLEGGPRRKLPEEKPLVNKAAVLYIGRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVA 108 (192)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a 108 (192)
+++..+.|+++...+. ..++|||+|||+.+++++|+++|+.|| .|..|.++.++ .|.++|||||+|.+.++|
T Consensus 100 ~~~~~~~g~~i~v~~~------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 100 KTHKVVGQNEIIVSHL------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp TTTCEETTEECEEEEC------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHH
T ss_pred hCCcEeCCcEEEEEEC------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHH
Confidence 4666777777665442 478999999999999999999999999 99999999987 488999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEEcCCCCC
Q 042948 109 EVVADAMHGYLLFEHILQVHLIPPEHV 135 (192)
Q Consensus 109 ~~al~~lng~~l~g~~i~v~~a~~~~~ 135 (192)
..|+..|||..++|+.|.|.++.+...
T Consensus 173 ~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 173 RYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 999999999999999999999987654
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=7.7e-16 Score=120.01 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 50 VNKAAVLYIGRIPRWF---------YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
....++|||||||..+ ++++|+.+|++||.|.+|.++.+ +|||||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999853 68999999999999999999999999
Q ss_pred ------------CCeeEEEEEcCCCC
Q 042948 121 ------------FEHILQVHLIPPEH 134 (192)
Q Consensus 121 ------------~g~~i~v~~a~~~~ 134 (192)
.|+.|.|.+|....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998754
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=2.6e-16 Score=116.57 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||.++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|..|+ .|||..+.|++|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456789999999999999999999999998766 33444457889999999999999999999 5999999999999999
Q ss_pred cCCCCC
Q 042948 130 IPPEHV 135 (192)
Q Consensus 130 a~~~~~ 135 (192)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 987543
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=8.9e-16 Score=116.01 Aligned_cols=77 Identities=18% Similarity=0.380 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEc
Q 042948 52 KAAVLYIGRIPR-WFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLI 130 (192)
Q Consensus 52 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a 130 (192)
.+++|||+|||+ .+++++|+++|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998775 689999999999999999999999999999999998
Q ss_pred CCC
Q 042948 131 PPE 133 (192)
Q Consensus 131 ~~~ 133 (192)
.+.
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=114.93 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF-EHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~-g~~i~v~ 128 (192)
++.++|||+|||..+++++|+++|+.|| .|..+.++.+. +|||||+|.+.++|..|+..|||..++ |++|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999986542 689999999999999999999999999 9999999
Q ss_pred EcCCC
Q 042948 129 LIPPE 133 (192)
Q Consensus 129 ~a~~~ 133 (192)
++.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98864
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.4e-15 Score=116.28 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCe--eEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCe----e
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTI--RRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEH----I 124 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i--~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~----~ 124 (192)
++.++|||+|||+++++++|+++|++||.| ..+.++.+. +..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346799999999999999999999999998 899988775 45569999999999999999999999999776 6
Q ss_pred EEEEEc
Q 042948 125 LQVHLI 130 (192)
Q Consensus 125 i~v~~a 130 (192)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=5e-15 Score=117.82 Aligned_cols=76 Identities=18% Similarity=0.444 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF-EHILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~-g~~i~v~~ 129 (192)
...++|||+|||..+++++|+++|++||.|..|.++.++ +|||||+|.+.++|..|+..|||..|+ |+.|.|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456899999999999999999999999999999998664 589999999999999999999999999 99999999
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-14 Score=100.95 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCc-----------HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCce
Q 042948 51 NKAAVLYIGRIPRWFY-----------EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYL 119 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~ 119 (192)
...++|+|.||..... +++|+++|++||.|..|.+ .++ .++|||||+|.+.++|..|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999954432 5899999999999999965 444 378999999999999999999999999
Q ss_pred eCCeeEEEEEcCCCC
Q 042948 120 LFEHILQVHLIPPEH 134 (192)
Q Consensus 120 l~g~~i~v~~a~~~~ 134 (192)
++|++|.|.++.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999998754
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=6.3e-15 Score=116.38 Aligned_cols=78 Identities=22% Similarity=0.500 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEE
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHL 129 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~ 129 (192)
....++|||+|||+++|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 456789999999999999999999999999999998644 68999999999999999999999999999999999
Q ss_pred cCCC
Q 042948 130 IPPE 133 (192)
Q Consensus 130 a~~~ 133 (192)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8764
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=4.8e-15 Score=114.85 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccC-CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC-CeeEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFG-TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF-EHILQVH 128 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~-g~~i~v~ 128 (192)
+..++|||+|||..+++++|+++|+.|| .|..+.++.+ .+|||||+|.+.++|..|+..|||..++ |++|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred EcCCC
Q 042948 129 LIPPE 133 (192)
Q Consensus 129 ~a~~~ 133 (192)
++.+.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99864
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=7.1e-16 Score=105.65 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=65.0
Q ss_pred EcCCCCCCcHHHHHHHH------------hccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeE
Q 042948 58 IGRIPRWFYEKEMHAFF------------SQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHIL 125 (192)
Q Consensus 58 V~nLp~~~te~~l~~~F------------~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i 125 (192)
+.|||..+++++|++.| ++||.|.+|.++.+. ++.++|||||+|.+.++|.+|+..|||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 999999999999887 58899999999999999999999999999999999
Q ss_pred EEEEcC
Q 042948 126 QVHLIP 131 (192)
Q Consensus 126 ~v~~a~ 131 (192)
.|.++.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999863
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=8.1e-15 Score=100.49 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCcEEEEcCC--CCCC--------cHHHHHHHHhccCCeeEEEEEecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCce
Q 042948 52 KAAVLYIGRI--PRWF--------YEKEMHAFFSQFGTIRRLRIARNKKT--GKSKHFGFIEFSDPDVAEVVADAMHGYL 119 (192)
Q Consensus 52 ~~~~l~V~nL--p~~~--------te~~l~~~F~~~G~i~~v~~~~~~~t--g~~~g~afV~f~~~~~a~~al~~lng~~ 119 (192)
+++.|.+.|+ |..+ .+++|++.|++||.|.+|.+++++.+ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899998 3333 24789999999999999999988754 3679999999999999999999999999
Q ss_pred eCCeeEEEEEcCCC
Q 042948 120 LFEHILQVHLIPPE 133 (192)
Q Consensus 120 l~g~~i~v~~a~~~ 133 (192)
++|+.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998753
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=2.3e-14 Score=100.22 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHHhccCCeeEEEEEecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 042948 52 KAAVLYIGRIPR-----WFYEKEMHAFFSQFGTIRRLRIARNKK----TGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE 122 (192)
Q Consensus 52 ~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~~~~~~~----tg~~~g~afV~f~~~~~a~~al~~lng~~l~g 122 (192)
++++|++.|+-. +--+++|++.|++||.|.+|.++.++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 478999999832 123689999999999999999999864 35678999999999999999999999999999
Q ss_pred eeEEEEEcCC
Q 042948 123 HILQVHLIPP 132 (192)
Q Consensus 123 ~~i~v~~a~~ 132 (192)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=2.6e-14 Score=107.59 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQF----G-------TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
..++|||+|||+++++++|+++|+.| | .|..+.+ +.++|||||+|.+.++|..|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36899999999999999999999999 4 5555544 345799999999999999999 8999999
Q ss_pred CCeeEEEEEcCCC
Q 042948 121 FEHILQVHLIPPE 133 (192)
Q Consensus 121 ~g~~i~v~~a~~~ 133 (192)
.|++|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998765
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3.7e-14 Score=104.41 Aligned_cols=76 Identities=28% Similarity=0.461 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcc----C-------CeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQF----G-------TIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
+.++|||+|||+++++++|+++|++| | .|..+.+.. ++|||||+|.+.++|..|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 666666643 4789999999999999999 8999999
Q ss_pred CCeeEEEEEcCCCC
Q 042948 121 FEHILQVHLIPPEH 134 (192)
Q Consensus 121 ~g~~i~v~~a~~~~ 134 (192)
.|++|.|.++.+..
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999877653
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-13 Score=90.71 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCCCCC
Q 042948 63 RWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPPEHV 135 (192)
Q Consensus 63 ~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~~~~ 135 (192)
..+++++|+++|++||.|..|.++ +.++|||||+|.+.++|..|+..+++ +.|++|.|.++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 568999999999999999999997 35789999999999999999987555 6799999999987653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=2.5e-13 Score=111.01 Aligned_cols=76 Identities=9% Similarity=0.236 Sum_probs=65.4
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee---CCe-
Q 042948 50 VNKAAVLYIGR--IPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL---FEH- 123 (192)
Q Consensus 50 ~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l---~g~- 123 (192)
..++.+||||| |++.+++++|+++|++||.|..|.+.. ++|||||+|.+.++|..|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45578999999 588999999999999999999887753 468999999999999999999999987 345
Q ss_pred -eEEEEEcC
Q 042948 124 -ILQVHLIP 131 (192)
Q Consensus 124 -~i~v~~a~ 131 (192)
+|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=2.4e-12 Score=89.32 Aligned_cols=78 Identities=9% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCC----------cHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeC
Q 042948 52 KAAVLYIGRIPRWF----------YEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLF 121 (192)
Q Consensus 52 ~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~ 121 (192)
+++.|.+.|+=..- .+++|++.|++||.|.+|.+.++. .+|++||+|.+.++|..|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46678888773211 236889999999999999987653 4899999999999999999999999999
Q ss_pred CeeEEEEEcCCC
Q 042948 122 EHILQVHLIPPE 133 (192)
Q Consensus 122 g~~i~v~~a~~~ 133 (192)
|+.|.|.++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998653
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=9.2e-12 Score=82.00 Aligned_cols=74 Identities=19% Similarity=0.396 Sum_probs=63.7
Q ss_pred CCCcEEEEcCCCC----CCcH----HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC
Q 042948 51 NKAAVLYIGRIPR----WFYE----KEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE 122 (192)
Q Consensus 51 ~~~~~l~V~nLp~----~~te----~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g 122 (192)
++..||+|...+. +.-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 5578888887762 2323 6789999999999999999875 8999999999999997 99999999
Q ss_pred eeEEEEEcCCC
Q 042948 123 HILQVHLIPPE 133 (192)
Q Consensus 123 ~~i~v~~a~~~ 133 (192)
+.|.|+++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998874
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.9e-11 Score=85.33 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CceeCCee
Q 042948 49 LVNKAAVLYIGRIPRW-FYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVADAMH--GYLLFEHI 124 (192)
Q Consensus 49 ~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~-~~~a~~al~~ln--g~~l~g~~ 124 (192)
..+.++.|||+||++. ++.++|+++|++||.|..|.+..+.. .|||.|.+ ..+|..|+..|| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3567899999999999 99999999999999999999988864 59999999 899999999995 78899999
Q ss_pred EEEEEcCCCC
Q 042948 125 LQVHLIPPEH 134 (192)
Q Consensus 125 i~v~~a~~~~ 134 (192)
+.+++.....
T Consensus 88 ~~~evL~Gee 97 (121)
T 1owx_A 88 VTWEVLEGEV 97 (121)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECCCHH
Confidence 9988876554
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.7e-10 Score=76.31 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCC------CcH---HHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 50 VNKAAVLYIGRIPRW------FYE---KEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~------~te---~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
-++..||+|..++.+ ..+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 356789999888743 221 5689999999999999999885 9999999999999998 999999
Q ss_pred CCeeEEEEEcC
Q 042948 121 FEHILQVHLIP 131 (192)
Q Consensus 121 ~g~~i~v~~a~ 131 (192)
+|+.|.|++-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=3.3e-10 Score=87.05 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=61.2
Q ss_pred CcHHHHHHHHhccCCeeEEEEEecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEEEcCC
Q 042948 65 FYEKEMHAFFSQFGTIRRLRIARNKK----TGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVHLIPP 132 (192)
Q Consensus 65 ~te~~l~~~F~~~G~i~~v~~~~~~~----tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~~a~~ 132 (192)
-.+++|.+.|++||.|.++.++.+.. ++.++|++||+|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35689999999999999999986543 458999999999999999999999999999999999999764
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.5e-07 Score=63.64 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcc-----CCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCee
Q 042948 50 VNKAAVLYIGRIPRWFYEKEMHAFFSQF-----GTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHI 124 (192)
Q Consensus 50 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~ 124 (192)
.+..++|-+-|||..++...|+.+...+ |.+..+.+..|- |-|+|+|.+...|-+|.=+|+|..|.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457889999999999999999999999 999999998885 47999999999999988899999999999
Q ss_pred EEEEE
Q 042948 125 LQVHL 129 (192)
Q Consensus 125 i~v~~ 129 (192)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99874
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00051 Score=45.85 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc-----cCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEE
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQ-----FGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQ 126 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~-----~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~ 126 (192)
...+|.|.|||+.+.++.|+-+|+. -|+|..+.... +-|+|+|.+...|++.|+. ..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4678999999999999999999987 25688877643 3689999999999999853 36788999999
Q ss_pred EEEcCCCCCCcccccccC
Q 042948 127 VHLIPPEHVHPKLWRGFN 144 (192)
Q Consensus 127 v~~a~~~~~~~~~~~~~~ 144 (192)
|....+.....-+..+-+
T Consensus 78 V~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp EEECCCCCCCCCCCCSCC
T ss_pred EEcCCCCCcceEeeecCC
Confidence 988777665555555443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=0.0001 Score=49.38 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=63.1
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEE
Q 042948 53 AAVLYIGRIPRWF-Y----EKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQV 127 (192)
Q Consensus 53 ~~~l~V~nLp~~~-t----e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v 127 (192)
+.+|+|.||+..+ . .+.++.+|.+|+++........- .-..|.|.+.++|.+|-..||+..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999998865 2 25779999999998887666442 24689999999999999999999999999999
Q ss_pred EEcCCCC
Q 042948 128 HLIPPEH 134 (192)
Q Consensus 128 ~~a~~~~ 134 (192)
-++++..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.67 E-value=0.0002 Score=47.29 Aligned_cols=55 Identities=20% Similarity=0.487 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln 116 (192)
.+.++| ++|..+...||.++|+.||.| .|.++.|- .|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 466777 999999999999999999954 77888774 79999999999999998663
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.0005 Score=45.11 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=56.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGK--SKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~--~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
+.|.|.+||+++|++++.+.++....+....++..+.+.. ...-|||.|.+.+++..-.+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999988877777766654433 346699999999999999999999987
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.51 E-value=0.0002 Score=47.42 Aligned_cols=55 Identities=18% Similarity=0.425 Sum_probs=47.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln 116 (192)
.+.++| ++|..+...||..+|+.|| -..|.++.|- .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 356777 9999999999999999999 4478888774 79999999999999998764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.001 Score=45.73 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=58.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCC-eeEEEEE
Q 042948 51 NKAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFE-HILQVHL 129 (192)
Q Consensus 51 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g-~~i~v~~ 129 (192)
...+.|.|-+.|+.. -..|...|++||.|.+..... ...+-.|.|.+..+|++||. .||..|+| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 446788999999986 556777899999998877621 23589999999999999995 69999974 6677776
Q ss_pred cC
Q 042948 130 IP 131 (192)
Q Consensus 130 a~ 131 (192)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.98 E-value=0.00089 Score=46.69 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeE-EEEEec------------CCCC-CcccEEEEEEcCHHHHHHHHHHhCC
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRR-LRIARN------------KKTG-KSKHFGFIEFSDPDVAEVVADAMHG 117 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~------------~~tg-~~~g~afV~f~~~~~a~~al~~lng 117 (192)
....|.|-+.|++.+. .+-+.|++||.|.+ +....+ +.-+ ....+..|.|++..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 3456778899887654 56667999999866 211110 0000 134678999999999999995 699
Q ss_pred ceeCCeeEEEEEcCC
Q 042948 118 YLLFEHILQVHLIPP 132 (192)
Q Consensus 118 ~~l~g~~i~v~~a~~ 132 (192)
..|+|..|-|....+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887754
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.83 E-value=0.0026 Score=42.03 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=49.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCcee
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGK--SKHFGFIEFSDPDVAEVVADAMHGYLL 120 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~--~~g~afV~f~~~~~a~~al~~lng~~l 120 (192)
+-.|.|..||+.+|++++.+.++..-++....++..+.+.+ .-.-|||.|.+.++...-.+.++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 45689999999999999887776654443333332222221 224589999999999999999999987
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.48 E-value=0.0016 Score=55.06 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHH
Q 042948 52 KAAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVAD 113 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 113 (192)
..+.|||. .|..+++.+|.++|++||+|.++.+..+. | -|+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 35789997 79999999999999999999999887654 2 599999999999887764
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.17 E-value=0.0063 Score=43.36 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCc
Q 042948 82 RLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGY 118 (192)
Q Consensus 82 ~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~ 118 (192)
.+.++.+. ..++|||||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45667764 368999999999999999999888864
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.66 E-value=0.0081 Score=42.51 Aligned_cols=41 Identities=15% Similarity=-0.136 Sum_probs=37.0
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHh-CCceeCCeeEEEEEcCC
Q 042948 91 TGKSKHFGFIEFSDPDVAEVVADAM-HGYLLFEHILQVHLIPP 132 (192)
Q Consensus 91 tg~~~g~afV~f~~~~~a~~al~~l-ng~~l~g~~i~v~~a~~ 132 (192)
....+|+++|+|.+.+.|++|++.| ||..++| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3467899999999999999999999 9999999 999998765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.44 E-value=0.26 Score=42.05 Aligned_cols=55 Identities=20% Similarity=0.482 Sum_probs=46.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 042948 53 AAVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMH 116 (192)
Q Consensus 53 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ln 116 (192)
+..++|+ +|..+...+|.+.|+.||.+ .|.++.+. .|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4677777 88899999999999999954 66666553 79999999999999998875
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=83.93 E-value=0.098 Score=35.11 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCCCcHHH
Q 042948 52 KAAVLYIGRIPRWFYEKE 69 (192)
Q Consensus 52 ~~~~l~V~nLp~~~te~~ 69 (192)
...+|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 446799999999998763
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=67.02 E-value=0.081 Score=44.34 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHhccCCeeEE
Q 042948 69 EMHAFFSQFGTIRRL 83 (192)
Q Consensus 69 ~l~~~F~~~G~i~~v 83 (192)
.|..+|.++|+|..|
T Consensus 8 ~L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 8 NLLALFAPRDPIPYL 22 (437)
T ss_pred cHHHhcCCCCCCcCC
Confidence 367899999988776
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.73 E-value=33 Score=20.47 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=40.0
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhccCC-----eeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHhCCceeCCeeEEEE
Q 042948 55 VLYIG-RIPRWFYEKEMHAFFSQFGT-----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAMHGYLLFEHILQVH 128 (192)
Q Consensus 55 ~l~V~-nLp~~~te~~l~~~F~~~G~-----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~lng~~l~g~~i~v~ 128 (192)
++||+ +=-..+...+|..++..-+. |-.+.+..+ |.||+.... .+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45553 22334566677777765433 455555322 788887654 5677888999999999999887
Q ss_pred EcC
Q 042948 129 LIP 131 (192)
Q Consensus 129 ~a~ 131 (192)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.88 E-value=40 Score=24.25 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=37.2
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHH--hccCCeeEEEEEecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 042948 55 VLYIGRIPR-W--------FYEKEMHAFF--SQFGTIRRLRIARNKKTGKSKHFGFIEFSD-PDVAEVVAD 113 (192)
Q Consensus 55 ~l~V~nLp~-~--------~te~~l~~~F--~~~G~i~~v~~~~~~~tg~~~g~afV~f~~-~~~a~~al~ 113 (192)
.+.|-|+|. . .+...|.+.| ..|.++. ++...++ . -+.|++.|.|.+ ......|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~-Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-L-GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-S-BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-C-CCceeEEEEecCChHHHHHHHH
Confidence 456667776 1 3457889977 9998875 4444443 2 378999999975 455566664
No 226
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=37.75 E-value=83 Score=20.43 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHhc-cCC----eeEEEEEecCCCCCcccEEEEEEcCHHHHHHH
Q 042948 63 RWFYEKEMHAFFSQ-FGT----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEVV 111 (192)
Q Consensus 63 ~~~te~~l~~~F~~-~G~----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~a 111 (192)
.+.+-.+|++.+.. |+. |.-..+...-..|++.|||.| |++.+.|...
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56677888877765 443 222344555556778888866 7777776653
No 227
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=35.68 E-value=91 Score=20.29 Aligned_cols=47 Identities=6% Similarity=0.010 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhc-cCC----eeEEEEEecCCCCCcccEEEEEEcCHHHHHH
Q 042948 63 RWFYEKEMHAFFSQ-FGT----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110 (192)
Q Consensus 63 ~~~te~~l~~~F~~-~G~----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~ 110 (192)
.+.+..+|++-+.. |+. |.-..+...-..|++.|||.| |++.+.|..
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888877765 443 322345555556778888866 788777654
No 228
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.77 E-value=30 Score=26.60 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=26.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEe
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIAR 87 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~ 87 (192)
..+.|+|||+.++..-|..++.. +.+..+.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 45789999999999999999987 6666655543
No 229
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=34.20 E-value=99 Score=20.29 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHhc-cCC----eeEEEEEecCCCCCcccEEEEEEcCHHHHHH
Q 042948 63 RWFYEKEMHAFFSQ-FGT----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110 (192)
Q Consensus 63 ~~~te~~l~~~F~~-~G~----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~ 110 (192)
.+.+-.+|++-+.. |+. |.-..+...-+.|++.|||.| |++.+.|..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888777664 543 222234444456678888866 788877765
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=34.00 E-value=17 Score=28.13 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=27.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEec
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~ 88 (192)
....|+|||+.++..-|..++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986555666655543
No 231
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.52 E-value=45 Score=29.13 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=40.3
Q ss_pred cCCCCCCcHHHHHHHHh----ccCCeeEEEEEecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 042948 59 GRIPRWFYEKEMHAFFS----QFGTIRRLRIARNKKTGKSKHFGFIEFSDPDVAEVVADAM 115 (192)
Q Consensus 59 ~nLp~~~te~~l~~~F~----~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~l 115 (192)
+..+.+.+-.+|..+|- .+|-|..+.+...+ -.....++++.|.+.+++..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 44566666667888883 57888888776554 2345667889999999998887654
No 232
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.90 E-value=1.6e+02 Score=20.51 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHhc-cCC----eeEEEEEecCCCCCcccEEEEEEcCHHHHHH
Q 042948 63 RWFYEKEMHAFFSQ-FGT----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110 (192)
Q Consensus 63 ~~~te~~l~~~F~~-~G~----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~ 110 (192)
.+++-.+|++-+.. |+. |.-..+...-..|.+.|||.| |++.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 45677888877765 554 222233344445677788876 788777665
No 233
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=26.20 E-value=45 Score=26.81 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=19.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQ 76 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~ 76 (192)
....|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999988888874
No 234
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=26.19 E-value=60 Score=24.50 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEE
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIA 86 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~ 86 (192)
..+.|+|+|+.++...+..++.....+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 357899999999999888888754445444433
No 235
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=25.81 E-value=20 Score=27.25 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhccCCeeEEEEEec
Q 042948 55 VLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIARN 88 (192)
Q Consensus 55 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~ 88 (192)
-..|+|||+.++...|..++...+.+..+.++..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 3478999999999999999987666666555443
No 236
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=25.40 E-value=1.7e+02 Score=20.10 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHhc-cCC----eeEEEEEecCCCCCcccEEEEEEcCHHHHHH
Q 042948 63 RWFYEKEMHAFFSQ-FGT----IRRLRIARNKKTGKSKHFGFIEFSDPDVAEV 110 (192)
Q Consensus 63 ~~~te~~l~~~F~~-~G~----i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~ 110 (192)
.+++-.+|++-+.. |+. |.-..+...-..|.+.|||.| |++.+.+..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 46788899888865 553 222244455456677888876 788777655
No 237
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=24.42 E-value=56 Score=24.54 Aligned_cols=33 Identities=6% Similarity=-0.002 Sum_probs=24.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhccCCeeEEEEE
Q 042948 54 AVLYIGRIPRWFYEKEMHAFFSQFGTIRRLRIA 86 (192)
Q Consensus 54 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~ 86 (192)
..+.|+|+|+.++..-|..++.....+..+.++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 347899999999999999988765444444443
No 238
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.10 E-value=1.2e+02 Score=19.09 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 79 TIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 79 ~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
.|.++++..-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788877766678899999999985
No 239
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.24 E-value=1.4e+02 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 79 TIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 79 ~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
.|.++++..-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47788887766678999999999986
No 240
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.31 E-value=1.5e+02 Score=19.32 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCCCcccEEEEEEcC
Q 042948 79 TIRRLRIARNKKTGKSKHFGFIEFSD 104 (192)
Q Consensus 79 ~i~~v~~~~~~~tg~~~g~afV~f~~ 104 (192)
.|.+|++..-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777777666678999999999986
Done!