BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042952
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana
GN=At4g19900 PE=2 SV=1
Length = 644
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 142/292 (48%), Gaps = 19/292 (6%)
Query: 61 FSTNQCAIQFFMVWLSPARIFRPRDFLAVETLMKANPHSCLVLISRS--LDTRRGYKILK 118
F +C+++ FMVW SP +F R +E+L+ + +C+V+ S + LD R
Sbjct: 363 FRKEKCSMRVFMVWNSPGWMFSVRHQRGLESLLSQHRDACVVVFSETVELDFFRN----- 417
Query: 119 PLLDLGFKILAVTPDLASLVKDTPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKY 178
+ +K+ P+L L++DTP + D + S L+RLA LYKY
Sbjct: 418 SFVKDSYKVAVAMPNLDELLQDTPTHVFASVWFDWRKTK---FYPTHYSELVRLAALYKY 474
Query: 179 GGVYLDTDFIVLKDFKGLRNAIGPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFAT 238
GGVYLD+D IVL LRN IG + DQ ++LN A + F+K P L + L E+
Sbjct: 475 GGVYLDSDVIVLGSLSSLRNTIGME--DQVA--GESLNGAVMSFEKKSPFLLECLNEYYL 530
Query: 239 TFDGNTWGHNGPYMLTRVTRRVGNTPG-----YNLTILGLEAFYPVNWVQIKRFFKKPAT 293
T+D NG +LTRV +R N L I F+P+N QI +F PA
Sbjct: 531 TYDDKCLRCNGADLLTRVAKRFLNGKNRRMNQQELNIRPSSVFFPINSQQITNYFAYPAI 590
Query: 294 EEESKWVDETVLRLSEESYGLHLWNKITRKFVINEGSVIHRLIKSHCILCQD 345
E+E DE+ ++ ES H WN +T + S++ + + CI C D
Sbjct: 591 EDERSQQDESFKKILNESLTFHFWNSVTSSLIPEPESLVAKFLDHSCIRCSD 642
>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus
GN=A4galt PE=2 SV=1
Length = 359
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 128/248 (51%), Gaps = 41/248 (16%)
Query: 88 AVETLMKANPHSCLVLISRSL--DTRRGYKILKPLLDLGFKILAVTP-------DLASLV 138
+VE+ +A+P S +V++ + L DT + +LG +L+ P DL L
Sbjct: 103 SVESAARAHPESQVVVLMKGLPRDTTAQPR------NLGISLLSCFPNVWIRPLDLQELF 156
Query: 139 KDTPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRN 198
+DTP W + + +P ++ + LS+ R+A+L+K+GG+YLDTDFIVLK+ L N
Sbjct: 157 EDTPLAAWYSEARH-RWEPYQLPV---LSDASRIALLWKFGGIYLDTDFIVLKNLLNLTN 212
Query: 199 AIGPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRVTR 258
+G Q LN A L F++ H L L +F ++G WGH GP +LTRV +
Sbjct: 213 TLGIQSR-------YVLNGAFLAFERKHEFLALCLHDFVANYNGWIWGHQGPQLLTRVFK 265
Query: 259 RVGNTPGY-------NLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVLRLSEES 311
+ + +T L EAFYP+ W K++F+ + EE ++ ++ T
Sbjct: 266 KWCSIQSLEKSHACRGVTALPPEAFYPIPWQNWKKYFEDISPEELTQLLNAT-------- 317
Query: 312 YGLHLWNK 319
Y +H+WNK
Sbjct: 318 YAVHVWNK 325
>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus
GN=A4galt PE=1 SV=1
Length = 360
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 128/242 (52%), Gaps = 29/242 (11%)
Query: 88 AVETLMKANPHSCLVLISRSL--DTRRGYKILKPLLDLGFKILAVTP-DLASLVKDTPAE 144
+VE+ +A+P S +V++ + L DT + L L F + + P DL L +DTP
Sbjct: 104 SVESAARAHPESQVVVLMKGLPRDTTAWPRNLGISLLSCFPNVQIRPLDLQELFEDTPLA 163
Query: 145 TWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIGPQE 204
W + + +P + + LS+ R+A+L+K+GG+YLDTDFIVLK+ + L N +G Q
Sbjct: 164 AWYLEAQH-RWEPYLLPV---LSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQS 219
Query: 205 VDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRVTRRVGNTP 264
LN A L F++ H L +++F ++G WGH GP +LTRV ++ +
Sbjct: 220 R-------YVLNGAFLAFERKHEFLALCIRDFVAHYNGWIWGHQGPQLLTRVFKKWCSIH 272
Query: 265 GY-------NLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVLRLSEESYGLHLW 317
+T L EAFYP+ W K++F+ + EE ++ ++ T Y +H+W
Sbjct: 273 SLKESRACRGVTALPPEAFYPIPWQNWKKYFEDVSPEELAQLLNAT--------YAVHVW 324
Query: 318 NK 319
NK
Sbjct: 325 NK 326
>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens
GN=A4GALT PE=2 SV=1
Length = 353
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 39/269 (14%)
Query: 88 AVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTP-------DLASLVKD 140
+VE+ + +P S ++++ + L G P LG +L+ P DL L +D
Sbjct: 97 SVESAARTHPESHVLVLMKGLP---GGNASLPR-HLGISLLSCFPNVQMLPLDLRELFRD 152
Query: 141 TPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAI 200
TP W ++ G +P + + LS+ R+A+++K+GG+YLDTDFIVLK+ + L N +
Sbjct: 153 TPLADWYAAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVL 208
Query: 201 GPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRVTRR- 259
G T+ LN A L F++ H + +++F ++G WGH GP +LTRV ++
Sbjct: 209 G-------TQSRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKW 261
Query: 260 ------VGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVLRLSEESYG 313
+ +T L EAFYP+ W K++F+ EE + RL +Y
Sbjct: 262 CSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPEE--------LPRLLSATYA 313
Query: 314 LHLWNKITR--KFVINEGSVIHRLIKSHC 340
+H+WNK ++ +F +++ +L +C
Sbjct: 314 VHVWNKKSQGTRFEATSRALLAQLHARYC 342
>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes
GN=A4GALT PE=3 SV=1
Length = 353
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 137/269 (50%), Gaps = 39/269 (14%)
Query: 88 AVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTP-------DLASLVKD 140
+VE+ + +P S ++++ + L G P LG +L+ P DL L +D
Sbjct: 97 SVESAARTHPESHVLVLMKGLP---GGNASLPR-HLGISLLSCFPNVQMLPLDLRELFQD 152
Query: 141 TPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAI 200
TP W ++ G +P + + LS+ R+A+++K+GG+YLDTDFIVLK+ + L N +
Sbjct: 153 TPLADWYAAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVL 208
Query: 201 GPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRVTRR- 259
G T+ LN A L F++ H + +++F ++G WGH GP +LTRV ++
Sbjct: 209 G-------TQSRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKW 261
Query: 260 ------VGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVLRLSEESYG 313
+ +T L EAFYP+ W K++F+ EE + RL +Y
Sbjct: 262 CSIRSLAESRSCRGVTTLPPEAFYPIPWQDWKKYFEDINPEE--------LPRLLSATYA 313
Query: 314 LHLWNKITR--KFVINEGSVIHRLIKSHC 340
+H+WNK ++ +F +++ +L +C
Sbjct: 314 VHVWNKKSQGTRFEATSRALLAQLHARYC 342
>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment)
OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1
Length = 327
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 39/269 (14%)
Query: 88 AVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTP-------DLASLVKD 140
+VE+ + +P S ++++ + L G P LG +L+ P DL L +D
Sbjct: 71 SVESAARTHPESHVLVLMKGLP---GGNASLPR-HLGISLLSCFPNVQMLPLDLRELFRD 126
Query: 141 TPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAI 200
TP W ++ G +P + + LS+ R+A+++K+GG+YLDTDFIVLK+ + L N +
Sbjct: 127 TPLADWYAAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVL 182
Query: 201 GPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRVTRR- 259
G T+ LN A L F++ H + + +F ++G WGH GP +LTRV ++
Sbjct: 183 G-------TQSRYVLNGAFLAFERXHEFMALCMXDFVDHYNGWIWGHQGPQLLTRVFKKW 235
Query: 260 ------VGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVLRLSEESYG 313
+ +T L EAFYP+ W K++F+ EE + RL +Y
Sbjct: 236 CSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPEE--------LPRLFSATYA 287
Query: 314 LHLWNKITR--KFVINEGSVIHRLIKSHC 340
+H+WNK ++ +F +++ +L +C
Sbjct: 288 VHVWNKKSQGTRFEATSRALLAQLHARYC 316
>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo
pygmaeus GN=A4GALT PE=3 SV=1
Length = 218
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 114/217 (52%), Gaps = 28/217 (12%)
Query: 133 DLASLVKDTPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKD 192
DL L +DTP W ++ G +P + + LS+ R+A+++K+GG+YLDTDFIVLK+
Sbjct: 10 DLRELFRDTPLADWYTAVQ-GRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKN 65
Query: 193 FKGLRNAIGPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYM 252
+ L N +G Q LN A L F + H + +++F ++G WGH GP +
Sbjct: 66 LRNLTNVLGTQSR-------YVLNGAFLAFQRRHEFMALCMRDFVDHYNGWIWGHQGPQL 118
Query: 253 LTRVTRR-------VGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVL 305
LTRV ++ + +T L EAFYP+ W K++F+ + EE +
Sbjct: 119 LTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDISPEE--------LP 170
Query: 306 RLSEESYGLHLWNKITR--KFVINEGSVIHRLIKSHC 340
RL +Y +H+WNK ++ +F +++ +L +C
Sbjct: 171 RLLNATYAVHVWNKKSQGTRFEATSRALLAQLHARYC 207
>sp|Q9UNA3|A4GCT_HUMAN Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT
PE=2 SV=1
Length = 340
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 37/221 (16%)
Query: 133 DLASLVKDTPAETWLKQIK-DGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLK 191
D+ L++DTP +W QI ER+ IS S+ RLA+++KYGG+Y+DTD I ++
Sbjct: 120 DMKRLLEDTPLFSWYNQINASAERNWLHIS-----SDASRLAIIWKYGGIYMDTDVISIR 174
Query: 192 DFKGLRNAIGPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPY 251
P+E A + + +N F HP L++ ++ F ++ WG+ GP
Sbjct: 175 PI--------PEENFLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPE 226
Query: 252 MLTRVTR---------RVGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDE 302
++TR+ R V + N++ L + FYP+++ + +R+++ W E
Sbjct: 227 LMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYE--------VWDTE 278
Query: 303 TVLRLSEESYGLHLWNKIT---RKFVINEGSVIHRLIKSHC 340
+ SY LHLWN + R + +++ L + HC
Sbjct: 279 PSFNV---SYALHLWNHMNQEGRAVIRGSNTLVENLYRKHC 316
>sp|Q10323|IMT3_SCHPO Inositol phosphoceramide mannosyltransferase 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17G8.11c PE=1 SV=1
Length = 356
Score = 38.1 bits (87), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 163 SVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIGPQEVDQATRKWKTLNNAALVF 222
+++ ++++R +LYKYGG+YLD D + L + P V + + ++N + F
Sbjct: 119 NIERADVVRYFILYKYGGIYLDLDVGCNRTLDPLLHY--PAWVRRTSP--SGISNNVMGF 174
Query: 223 DKGHPIL 229
KGHP L
Sbjct: 175 AKGHPFL 181
>sp|Q70AC7|5S_PROFR Methylmalonyl-CoA carboxyltransferase 5S subunit
OS=Propionibacterium freudenreichii subsp. shermanii
PE=1 SV=1
Length = 505
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 31 RMEWFQKKLPDLEV---FQSTNL--SRAFHDRVLKFSTNQCAIQFFMVWLSPARIFRPRD 85
R+ F+K +P+ + + NL R ++D V+ ++ A V+ + PR+
Sbjct: 75 RLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRN 134
Query: 86 FL-AVETLMKANPHS--CLVLISRSLDTRRGY-KILKPLLDLGFKILAVTPDLASLVKDT 141
A+ + KA H+ + + T GY K+ LLD+G +A+ D+A+L+K
Sbjct: 135 MAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALK-DMAALLKPQ 193
Query: 142 PAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYK 177
PA +K IKD +I+L + + L K
Sbjct: 194 PAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMK 229
>sp|Q85435|P7_RDVF Protein P7 OS=Rice dwarf virus (isolate Fujian) PE=2 SV=1
Length = 506
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 143 AETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIG- 201
+ET K + DG ++ +S ++S L GGV + F + DF ++ +
Sbjct: 316 SETISKHVSDGSYG-NRVIISHKMSRL-------SNGGVKIIGRFKI-SDFNTVKKNLSS 366
Query: 202 -PQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTF-------DGNTWGHN 248
P EVD A +W+ L+ LV D +L D + + T+ DGN N
Sbjct: 367 RPGEVDSAKEQWEALSGNGLVTDNNTSMLHDKILDTITSNKPGVVLRDGNKKSDN 421
>sp|Q64QP1|LEUC_BACFR 3-isopropylmalate dehydratase large subunit OS=Bacteroides fragilis
(strain YCH46) GN=leuC PE=3 SV=1
Length = 464
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 168 NLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIGPQEVDQATRKWKTLNNA-ALVFDKGH 226
L L++ G + D + + KG NA +E DQA + WKTL + VFDK
Sbjct: 217 TLCNLSIEMGARGGMIAPDEVTFEYIKGRENAPQGEEWDQAVQYWKTLKSEDDAVFDK-- 274
Query: 227 PILFDFLQEFATTFDGNTWGHNGPYMLTRVTRRVGNTPGYNLT 269
+ FD A T+G N P M +T+ + T G N T
Sbjct: 275 EVHFD----AADIEPMITYGTN-PGMGMGITQHIPTTDGMNET 312
>sp|Q5LAB1|LEUC_BACFN 3-isopropylmalate dehydratase large subunit OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=leuC PE=3 SV=1
Length = 464
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 168 NLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIGPQEVDQATRKWKTLNNA-ALVFDKGH 226
L L++ G + D + + KG NA +E DQA + WKTL + VFDK
Sbjct: 217 TLCNLSIEMGARGGMIAPDEVTFEYIKGRENAPQGEEWDQAVQYWKTLKSEDDAVFDK-- 274
Query: 227 PILFDFLQEFATTFDGNTWGHNGPYMLTRVTRRVGNTPGYNLT 269
+ FD A T+G N P M +T+ + T G N T
Sbjct: 275 EVHFD----AADIEPMITYGTN-PGMGMGITQHIPTTDGMNET 312
>sp|Q00094|KR73_ICHVA Protein kinase ORF73 OS=Ictalurid herpesvirus 1 (strain Auburn)
GN=ORF73 PE=3 SV=1
Length = 962
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 141 TPAETWLKQIK-DGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDF----IVLKDFKG 195
TPA+ + ++ DGE D G + +V L LI LAV ++ G+ T+ I+ D +G
Sbjct: 777 TPAKRSITELNFDGETDDGTLLGAVILKQLISLAVAFRDNGINFITNMYNTHILYHDPRG 836
Query: 196 LRNAIGPQEVD 206
+ IGP ++D
Sbjct: 837 VD--IGPLKLD 845
>sp|Q5UQW4|YL373_MIMIV Uncharacterized glycosyltransferase L373 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L373 PE=3 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 159 KISLSVQLSNLIRLAVLYKYGGVYLDTDFIV---LKDFKGLRNAIGPQEVDQATRKWKTL 215
K + Q ++ R A+L +GG+YLD D + L DF GL ++ +
Sbjct: 63 KYKIYAQKADFARYAILKIHGGIYLDMDMVCRKNLGDFLGLGFFFTAYKLKNVFTNYL-- 120
Query: 216 NNAALVFDKGHPIL-FDFLQEFATTFDGNTWGHNGPYMLTR--VTRRVGNTPGYNLTILG 272
N + HP+ + F F D + ++ L R +T N P +++++
Sbjct: 121 -NGVIGSRPNHPVFDYIFKNMFLRQNDASNVTNSTGTKLFRDSITEYTKNNPTNDISLID 179
Query: 273 LEAFYPVN 280
+ +P N
Sbjct: 180 SKYLHPCN 187
>sp|Q85448|P7_RDVA Protein P7 OS=Rice dwarf virus (isolate Akita) PE=2 SV=1
Length = 506
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 143 AETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIGP 202
+ET K + DG ++ +S ++S L V K G + +DF +K K L + G
Sbjct: 316 SETISKHVSDGSYG-NRVIISHKMSRLSNGGV--KIIGRFKISDFNTVK--KNLSSRSG- 369
Query: 203 QEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTF-------DGNTWGHN 248
EVD A +W+ L+ LV D +L D + + T+ DGN N
Sbjct: 370 -EVDSAKEQWEALSGNGLVTDSNISMLHDKILDTITSNKPGVVLRDGNKKSEN 421
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,856,759
Number of Sequences: 539616
Number of extensions: 5830835
Number of successful extensions: 11786
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11756
Number of HSP's gapped (non-prelim): 16
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)