Query 042952
Match_columns 349
No_of_seqs 267 out of 1121
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928 Alpha-1,4-N-acetylgluc 100.0 6.9E-72 1.5E-76 533.7 20.0 343 3-348 61-406 (409)
2 PF04572 Gb3_synth: Alpha 1,4- 100.0 1.3E-28 2.7E-33 210.6 10.5 119 220-346 1-130 (135)
3 PF05704 Caps_synth: Capsular 99.8 1.9E-20 4E-25 178.1 13.4 143 65-240 43-190 (276)
4 PF04488 Gly_transf_sug: Glyco 99.8 1.4E-20 3.1E-25 153.4 7.9 96 82-197 1-97 (103)
5 COG3774 OCH1 Mannosyltransfera 99.8 7.2E-19 1.6E-23 170.1 9.1 191 65-322 81-280 (347)
6 PF12919 TcdA_TcdB: TcdA/TcdB 98.7 3.3E-08 7.1E-13 101.0 9.2 39 67-107 1-39 (514)
7 PRK15382 non-LEE encoded effec 94.8 0.061 1.3E-06 50.2 5.8 76 167-244 182-279 (326)
8 PRK15383 type III secretion sy 94.7 0.067 1.5E-06 49.9 5.8 77 166-244 189-287 (335)
9 PRK15384 type III secretion sy 94.5 0.084 1.8E-06 49.3 5.8 77 166-244 186-284 (336)
10 cd06914 GT8_GNT1 GNT1 is a fun 91.4 0.62 1.3E-05 44.7 7.0 106 169-277 81-190 (278)
11 cd02537 GT8_Glycogenin Glycoge 91.0 0.31 6.8E-06 45.3 4.6 84 180-274 93-179 (240)
12 PRK15171 lipopolysaccharide 1, 90.9 0.72 1.6E-05 45.3 7.2 111 68-198 24-142 (334)
13 cd06432 GT8_HUGT1_C_like The C 90.6 1.2 2.6E-05 41.9 8.1 109 69-198 2-117 (248)
14 cd04194 GT8_A4GalT_like A4GalT 90.0 0.85 1.8E-05 42.2 6.5 164 85-275 15-207 (248)
15 cd06429 GT8_like_1 GT8_like_1 87.5 3.4 7.4E-05 39.1 8.8 71 165-238 98-177 (257)
16 PF01501 Glyco_transf_8: Glyco 85.6 0.78 1.7E-05 41.5 3.3 109 166-281 84-219 (250)
17 cd06431 GT8_LARGE_C LARGE cata 84.2 3.1 6.8E-05 39.8 6.9 30 169-198 85-119 (280)
18 PLN00176 galactinol synthase 81.5 1.9 4.2E-05 42.4 4.3 69 170-238 105-207 (333)
19 COG1442 RfaJ Lipopolysaccharid 76.0 7.1 0.00015 38.4 6.4 93 85-197 17-118 (325)
20 PF03407 Nucleotid_trans: Nucl 74.9 15 0.00032 33.0 7.8 110 164-277 53-173 (212)
21 PLN02718 Probable galacturonos 72.9 14 0.00029 39.2 7.8 118 68-198 312-439 (603)
22 cd06430 GT8_like_2 GT8_like_2 59.8 4.4 9.5E-05 39.4 1.1 30 169-198 85-118 (304)
23 PLN02829 Probable galacturonos 58.3 15 0.00032 39.1 4.7 35 164-198 440-478 (639)
24 cd00505 Glyco_transf_8 Members 58.1 5.1 0.00011 37.1 1.3 172 84-277 15-213 (246)
25 PLN02870 Probable galacturonos 53.9 9.7 0.00021 39.7 2.6 35 164-198 326-364 (533)
26 PLN02659 Probable galacturonos 53.4 9.8 0.00021 39.6 2.5 35 164-198 327-365 (534)
27 PLN02867 Probable galacturonos 49.2 12 0.00026 39.0 2.4 35 164-198 328-366 (535)
28 PLN02910 polygalacturonate 4-a 47.6 25 0.00055 37.4 4.4 36 163-198 457-496 (657)
29 PLN02742 Probable galacturonos 42.5 20 0.00042 37.5 2.7 35 164-198 336-374 (534)
30 PLN02769 Probable galacturonos 41.1 19 0.00042 38.3 2.4 35 164-198 435-473 (629)
31 PLN02523 galacturonosyltransfe 36.7 18 0.0004 37.9 1.4 35 164-198 360-398 (559)
32 KOG1928 Alpha-1,4-N-acetylgluc 27.7 32 0.00069 34.6 1.4 24 266-289 335-358 (409)
33 PF07801 DUF1647: Protein of u 22.2 1.6E+02 0.0034 25.5 4.4 61 69-135 62-122 (142)
34 KOG3092 Casein kinase II, beta 21.9 36 0.00078 31.0 0.5 13 336-348 133-145 (216)
35 cd00307 RuBisCO_small_like Rib 21.6 1.4E+02 0.003 23.5 3.7 39 67-105 25-67 (84)
36 PF13453 zf-TFIIB: Transcripti 21.3 29 0.00064 23.0 -0.1 10 177-186 24-33 (41)
37 PF12919 TcdA_TcdB: TcdA/TcdB 20.7 90 0.0019 32.7 3.1 46 138-189 187-232 (514)
No 1
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-72 Score=533.66 Aligned_cols=343 Identities=48% Similarity=0.850 Sum_probs=316.7
Q ss_pred ChhHHHhhhhhCCCCCCCCC-ccccCcccchhhhc--cCCCceeEeccCcccHHHHHHHhhhccCCcceeEEEEecCCCC
Q 042952 3 NIEELEQEEQYGETPDPLIP-PFWLKKEGRMEWFQ--KKLPDLEVFQSTNLSRAFHDRVLKFSTNQCAIQFFMVWLSPAR 79 (349)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~I~~~W~sg~~ 79 (349)
+|..|..+..-+.+...+.+ +..+..++++-|++ ..+++++++.|...++.|+.++..++...|+.+|+|+|+|+..
T Consensus 61 ~i~~~~~~~~~~~e~~~~~~~~~~~~~~q~~~~~~e~~~l~e~~~~~s~~~~~sf~~~~~~~~~~~c~~~~fm~w~S~~~ 140 (409)
T KOG1928|consen 61 EILSVVPSLPVSNEFELLFSVGRSLSLKQKTTVNGEKIELQELENLSSELKSPSFQSRVNSFFRKECSVRFFMTWISPAE 140 (409)
T ss_pred EeccccccccccchhhhhcchhhhhhheeeeeeccccchhhheeeccccccCcccCCCcchhhccCCceeEEEEeccccc
Confidence 34445555555555556555 78888999999999 7799999999999999999999999998899999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCccccccchhhhhccccEEEeCCChhhhhcCCchHHHHHhhhcCCCCCCC
Q 042952 80 IFRPRDFLAVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTPDLASLVKDTPAETWLKQIKDGERDPGK 159 (349)
Q Consensus 80 ~l~~r~~~aIeS~~r~nP~~~V~v~s~~~~~~~g~~~l~~~~~~~~nV~~~~~d~~~~f~~tP~~~w~~~~~~g~~~~~~ 159 (349)
.++.|++||||||+++||++||+|+++++++.+|..++++|.+.|+++..+.+|+..++++||.+.|...++.|+.++|+
T Consensus 141 ~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~~ 220 (409)
T KOG1928|consen 141 SFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPGK 220 (409)
T ss_pred CCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHhHHHHHHHHHcCcEEEeCCceecccchhhhccccccccccccCCccccccceEEecCCCHHHHHHHHHHHHh
Q 042952 160 ISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLRNAIGPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATT 239 (349)
Q Consensus 160 ~~~~a~~SD~~R~~lLyk~GGiYlD~Dv~~lkpl~~l~~~~g~e~~~~~~~~~~~l~n~v~~~~~~hp~l~~~l~~~~~~ 239 (349)
+++.++.||+.||++||||||||||+||+++|++..+.|.+|... ....|..+|||+|++.++|||+.+||+++..+
T Consensus 221 ~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~---~~~~~~~lnnavl~F~k~Hpfl~~cl~eF~~t 297 (409)
T KOG1928|consen 221 IPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDP---ATQAWTRLNNAVLIFDKNHPFLLECLREFALT 297 (409)
T ss_pred ccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccc---hhhHHHhhcCceeecCCCCHHHHHHHHHHHHh
Confidence 998888999999999999999999999999999999999999322 23467899999999999999999999999999
Q ss_pred cCCCccCccccHHHHHHHHHHhCCCCCceEEccCCccccCCchhhHhhccCCcchhhhhhHHHHHhhcCCCcEEEEeeCC
Q 042952 240 FDGNTWGHNGPYMLTRVTRRVGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEEESKWVDETVLRLSEESYGLHLWNK 319 (349)
Q Consensus 240 ~~~~~w~~tGP~llt~v~~~~~~~~~~~i~ilP~~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~sy~iHlwn~ 319 (349)
|++++||++||.++|||++++|+..+.+++|.|+.+|||++|.++..||.-|..+-++.|+.++...+.++||++|+||+
T Consensus 298 fNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k~Sy~vHlWNk 377 (409)
T KOG1928|consen 298 YNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLKNSYAVHLWNK 377 (409)
T ss_pred ccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhhhhhhHHHHHHHhccCeEEEeeec
Confidence 99999999999999999999999888889999999999999999999999998887888877788889999999999999
Q ss_pred cccccccCCCCHHHHHHHhcCCCcccccC
Q 042952 320 ITRKFVINEGSVIHRLIKSHCILCQDSYD 348 (349)
Q Consensus 320 ~~~~~~i~~gS~~~~L~~~~cp~~~~~~~ 348 (349)
.+++++|+.||+|++|+++|||+|.+++.
T Consensus 378 ~S~k~~ie~gS~~~~L~s~~Cp~~~~~s~ 406 (409)
T KOG1928|consen 378 FSRKLKIEEGSAVAKLVSKHCPRCYSATG 406 (409)
T ss_pred cccccccccchHHHHHHHhcCCcccchhh
Confidence 99999999999999999999999998653
No 2
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=99.95 E-value=1.3e-28 Score=210.62 Aligned_cols=119 Identities=44% Similarity=0.898 Sum_probs=107.0
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHhCCC---------CCceEEccCCccccCCchhhHhhccC
Q 042952 220 LVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRVTRRVGNTP---------GYNLTILGLEAFYPVNWVQIKRFFKK 290 (349)
Q Consensus 220 ~~~~~~hp~l~~~l~~~~~~~~~~~w~~tGP~llt~v~~~~~~~~---------~~~i~ilP~~~FyPi~~~~~~~~f~~ 290 (349)
|+++++|||++.+|+++..+|+++.|+++||.++|||++++|... +.+++|+|+++||||+|.+|+.||++
T Consensus 1 m~F~~~H~~~~~~l~df~~~Y~~~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~ 80 (135)
T PF04572_consen 1 MAFDKGHPFLWECLEDFVKNYDGNKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEP 80 (135)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcC
Confidence 678999999999999999999999999999999999999998752 24799999999999999999999998
Q ss_pred CcchhhhhhHHHHHhhcCCCcEEEEeeCCcccccccCCCC--HHHHHHHhcCCCcccc
Q 042952 291 PATEEESKWVDETVLRLSEESYGLHLWNKITRKFVINEGS--VIHRLIKSHCILCQDS 346 (349)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~sy~iHlwn~~~~~~~i~~gS--~~~~L~~~~cp~~~~~ 346 (349)
+..+...++ ..+||+||+||+++++.++++|| +|++||++|||+|.+.
T Consensus 81 ~~~~~~~~~--------~~~Sy~vHlWN~~s~~~~i~~~S~~~y~~La~~~CP~~~~~ 130 (135)
T PF04572_consen 81 PSTEEVMEW--------LKNSYAVHLWNKMSSGLPIEPGSNTLYAKLARQHCPRTYAA 130 (135)
T ss_pred CcchHHHHH--------hhCceEEEecccccCCccccCCcHHHHHHHHHHhChHHHHH
Confidence 876543332 34899999999999999999999 9999999999999764
No 3
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=99.84 E-value=1.9e-20 Score=178.12 Aligned_cols=143 Identities=21% Similarity=0.361 Sum_probs=105.3
Q ss_pred CcceeEEEEecCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCccccccchhhhhccccEEEeCCChhhhhcCCchH
Q 042952 65 QCAIQFFMVWLSPARIFRPRDFLAVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTPDLASLVKDTPAE 144 (349)
Q Consensus 65 ~~~~~I~~~W~sg~~~l~~r~~~aIeS~~r~nP~~~V~v~s~~~~~~~g~~~l~~~~~~~~nV~~~~~d~~~~f~~tP~~ 144 (349)
..++.||++|.+|.+++|+.++.||+|+.+.+|+++|++++.. + ++.++ ++ |..
T Consensus 43 ~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~--N------i~~Yv-----------~~-------P~~ 96 (276)
T PF05704_consen 43 TNEKIIWVCWWQGEENAPEIVKKCINSWRKNAPDYEVILLTED--N------IKDYV-----------DI-------PDF 96 (276)
T ss_pred CCCCcEEEEECCCccccCHHHHHHHHHHHHHCCCCeEEEEChH--H------HHHHc-----------CC-------chh
Confidence 4577899999999999999999999999999999999999752 1 23332 11 311
Q ss_pred HHHHhhhcCCCCCCCccchhhhHhHHHHHHHHHcCcEEEeCCceecccchhhh---ccccccccccc--cCCccccccce
Q 042952 145 TWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLR---NAIGPQEVDQA--TRKWKTLNNAA 219 (349)
Q Consensus 145 ~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lLyk~GGiYlD~Dv~~lkpl~~l~---~~~g~e~~~~~--~~~~~~l~n~v 219 (349)
. .+. +..|.++ .||+||++|+.+|++|||+|+|++++|.+|++.+. .++.+...... ........|.+
T Consensus 97 i-~~k-----~~~g~i~-~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~~~~~ff~~~~~~~~~~~~~~~~w~~~f 169 (276)
T PF05704_consen 97 I-LEK-----YEKGKIS-PAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEIFDSDFFSFSRPDKDYNPISISSWTNFF 169 (276)
T ss_pred H-HHH-----HHcCCCc-hhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHHhcCCeeEEeccCcCcccchHHHhHhhh
Confidence 1 111 2234454 48999999999999999999999999999999764 24444221110 11122345569
Q ss_pred EEecCCCHHHHHHHHHHHHhc
Q 042952 220 LVFDKGHPILFDFLQEFATTF 240 (349)
Q Consensus 220 ~~~~~~hp~l~~~l~~~~~~~ 240 (349)
|++++|||++..+.+.+.+-.
T Consensus 170 i~a~~~n~~~~~~~~~~~~yw 190 (276)
T PF05704_consen 170 IAAKKGNPFIKFWRDLLLEYW 190 (276)
T ss_pred eeECCCCHHHHHHHHHHHHHH
Confidence 999999999999999988643
No 4
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.83 E-value=1.4e-20 Score=153.41 Aligned_cols=96 Identities=30% Similarity=0.541 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHCCCCeEEEEeCCCCCccccccchhhhhccccEEEeCCChhhhhcCCchHHHHHhhhcCCCCCCCcc
Q 042952 82 RPRDFLAVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTPDLASLVKDTPAETWLKQIKDGERDPGKIS 161 (349)
Q Consensus 82 ~~r~~~aIeS~~r~nP~~~V~v~s~~~~~~~g~~~l~~~~~~~~nV~~~~~d~~~~f~~tP~~~w~~~~~~g~~~~~~~~ 161 (349)
|.+++|+||||+++||++++++|++... |+.+..+|+..++.++| |+..... +++.+..+
T Consensus 1 P~~~~~~i~s~~~~nP~~~~~~~~d~~~----------------~~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~~ 60 (103)
T PF04488_consen 1 PERFQCSIESWARHNPDYEYILWTDESD----------------NVRVKRIDIEFLFEKTP---WFLELYN-KWEPGRYP 60 (103)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCc----------------chhhhHHHHHHHHhCCh---HHHHHHh-hhhccccc
Confidence 6799999999999999999999987522 34455667888888887 4433332 23334445
Q ss_pred chhhhHhHHHHHHHHHcCcEEEeCCceecccc-hhhh
Q 042952 162 LSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDF-KGLR 197 (349)
Q Consensus 162 ~~a~~SD~~R~~lLyk~GGiYlD~Dv~~lkpl-~~l~ 197 (349)
..+++||++||++||+|||||+|+|++|+||+ +.+.
T Consensus 61 ~~~~~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 61 NYAHKSDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL 97 (103)
T ss_pred chHHHHHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence 57899999999999999999999999999999 7664
No 5
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=7.2e-19 Score=170.06 Aligned_cols=191 Identities=18% Similarity=0.279 Sum_probs=140.1
Q ss_pred CcceeEEEEecCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCccccccchhhhhccccEEEeCCChhhhhcCCchH
Q 042952 65 QCAIQFFMVWLSPARIFRPRDFLAVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTPDLASLVKDTPAE 144 (349)
Q Consensus 65 ~~~~~I~~~W~sg~~~l~~r~~~aIeS~~r~nP~~~V~v~s~~~~~~~g~~~l~~~~~~~~nV~~~~~d~~~~f~~tP~~ 144 (349)
.+.+.||++|.+.. +|+...-+.++++.+|||++..+|++.+. .++++.. .
T Consensus 81 ~IPk~IwQTw~~~~--~P~~~~~~~~~~~~~~PdY~yi~~tD~~~--------~~~v~h~-------------------~ 131 (347)
T COG3774 81 AIPKIIWQTWSNEK--FPEYVNKLFNRWRSLHPDYRYILWTDEMR--------EPLVEHD-------------------Y 131 (347)
T ss_pred hHHHHHHHHhcCCC--CCHHHHHHHHHHHhcCCCeEEEecchhhh--------hHHHhhc-------------------c
Confidence 46788999998876 99999999999999999999999887422 2232211 1
Q ss_pred HHHHhhhcCCCCCCCccchhhhHhHHHHHHHHHcCcEEEeCCceecccchhhh-c---cccccccccccCCccccccceE
Q 042952 145 TWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLR-N---AIGPQEVDQATRKWKTLNNAAL 220 (349)
Q Consensus 145 ~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lLyk~GGiYlD~Dv~~lkpl~~l~-~---~~g~e~~~~~~~~~~~l~n~v~ 220 (349)
.|+-... . .+|..+.++|++||.+|++|||||+|+|+-|+++++.++ + ++..+. ...++|.+|
T Consensus 132 ~~~~~ay----~--~yp~~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~-------~~~v~n~~m 198 (347)
T COG3774 132 PWFLDAY----R--RYPYGALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTI-------PLGVGNGVM 198 (347)
T ss_pred HHHHHHH----H--ccCcchhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcC-------CCcccchhh
Confidence 2332221 1 235568999999999999999999999999999999987 3 233322 257899999
Q ss_pred EecCCCHHHHHHHHHHHHhc--C---CCccCccccHHHHHHHHHHhCCCCCceEEccCCccccCCchhhHhhccCCcchh
Q 042952 221 VFDKGHPILFDFLQEFATTF--D---GNTWGHNGPYMLTRVTRRVGNTPGYNLTILGLEAFYPVNWVQIKRFFKKPATEE 295 (349)
Q Consensus 221 ~~~~~hp~l~~~l~~~~~~~--~---~~~w~~tGP~llt~v~~~~~~~~~~~i~ilP~~~FyPi~~~~~~~~f~~~~~~~ 295 (349)
++.|+||+++.+++.+.... . ..++..|||.+++.+.+++... .|+..|..+.-.+ ..+
T Consensus 199 ~s~p~hp~~~~~i~~~~~~~~~~~p~~ti~~stGp~iL~~i~~~~~~~-------~~~~~~~~~~~~~-~~~-------- 262 (347)
T COG3774 199 GSAPGHPFLKKMIERLPYNIIWKFPYWTIQASTGPLILSEIHSAYTVQ-------TPPASFDAVNLSD-PAF-------- 262 (347)
T ss_pred ccCCCCchHHHHHHHhhhccccCCCceeeecCCCChhHHHHHHHhhcc-------CCccccceeEecc-hhh--------
Confidence 99999999999999998221 1 1345689999999999988543 2666666655432 011
Q ss_pred hhhhHHHHHhhcCCCcEEEEeeCCccc
Q 042952 296 ESKWVDETVLRLSEESYGLHLWNKITR 322 (349)
Q Consensus 296 ~~~~~~~~~~~~~~~sy~iHlwn~~~~ 322 (349)
....+ ++|..|.+.++|.
T Consensus 263 --------~~~~~-~~~~~~~~g~~W~ 280 (347)
T COG3774 263 --------TNKRN-NQYFLHTGGSSWT 280 (347)
T ss_pred --------hhhcc-ceEEEeecCCccc
Confidence 12233 7999999999884
No 6
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=98.74 E-value=3.3e-08 Score=100.97 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=30.2
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCC
Q 042952 67 AIQFFMVWLSPARIFRPRDFLAVETLMKANPHSCLVLISRS 107 (349)
Q Consensus 67 ~~~I~~~W~sg~~~l~~r~~~aIeS~~r~nP~~~V~v~s~~ 107 (349)
+|+|||+|.+|. +|..|.-.|..|...|||+++.+|.++
T Consensus 1 eK~iH~iWigG~--~~~~~~~Yik~w~~~n~dy~~~lW~D~ 39 (514)
T PF12919_consen 1 EKNIHFIWIGGA--PPDIQRDYIKTWKDTNPDYTINLWYDS 39 (514)
T ss_dssp -SEEEEE--SS-----HHHHHHHHHHHHHTTTSEEEEEE-T
T ss_pred CCeEEEEEeCCC--CchhHHHHHHHHHHHCCCCEEEEEECc
Confidence 589999999987 799999999999999999999999764
No 7
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=94.84 E-value=0.061 Score=50.17 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=52.0
Q ss_pred HhHHHHHHHHHcC-------------------cEEEeCCceecccchhhhc--cccccccccccCCccccccceEEec-C
Q 042952 167 SNLIRLAVLYKYG-------------------GVYLDTDFIVLKDFKGLRN--AIGPQEVDQATRKWKTLNNAALVFD-K 224 (349)
Q Consensus 167 SD~~R~~lLyk~G-------------------GiYlD~Dv~~lkpl~~l~~--~~g~e~~~~~~~~~~~l~n~v~~~~-~ 224 (349)
=|++|-+.|-|-| -||||+|+++..-|..+.. -+...-.. ..+...+.||+|+.. .
T Consensus 182 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r--~~~~~slENg~I~VnRs 259 (326)
T PRK15382 182 FDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPDGIAVHVDC--NDDSKSLENGAIVVNRS 259 (326)
T ss_pred hHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEe--cCCccccccceEEEccC
Confidence 4899988887754 3899999999988776532 11111000 011246778887665 5
Q ss_pred CCHHHHHHHHHHHHhcCCCc
Q 042952 225 GHPILFDFLQEFATTFDGNT 244 (349)
Q Consensus 225 ~hp~l~~~l~~~~~~~~~~~ 244 (349)
+||.+.+-|+.+....++..
T Consensus 260 nHPALl~GL~iMhsK~da~P 279 (326)
T PRK15382 260 NHPALLAGLDIMKSKVDAHP 279 (326)
T ss_pred CCHHHHhhhHHhhcCCCCCc
Confidence 99999999999998876654
No 8
>PRK15383 type III secretion system protein; Provisional
Probab=94.72 E-value=0.067 Score=49.88 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=52.4
Q ss_pred hHhHHHHHHHHHcC-------------------cEEEeCCceecccchhhhc--cccccccccccCCccccccceEEec-
Q 042952 166 LSNLIRLAVLYKYG-------------------GVYLDTDFIVLKDFKGLRN--AIGPQEVDQATRKWKTLNNAALVFD- 223 (349)
Q Consensus 166 ~SD~~R~~lLyk~G-------------------GiYlD~Dv~~lkpl~~l~~--~~g~e~~~~~~~~~~~l~n~v~~~~- 223 (349)
-=|++|-+.|-|-| -||||+|+++..-|..+.. -+...-.. ..+...+.||+|+..
T Consensus 189 wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r--~~~~~slENg~I~VnR 266 (335)
T PRK15383 189 WFDFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSR--KDNHVSLENGIIAVNR 266 (335)
T ss_pred ehHHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEe--cCCceecccceEEEcc
Confidence 34999988887754 3899999999988776532 11111000 011246778887665
Q ss_pred CCCHHHHHHHHHHHHhcCCCc
Q 042952 224 KGHPILFDFLQEFATTFDGNT 244 (349)
Q Consensus 224 ~~hp~l~~~l~~~~~~~~~~~ 244 (349)
.+||.+.+-|+.+....++..
T Consensus 267 snHPALl~GL~iMhsK~da~P 287 (335)
T PRK15383 267 SEHPALIKGLEIMHSKPYGDP 287 (335)
T ss_pred CCCHHHHhhhHHhhcCCCCCc
Confidence 599999999999998876654
No 9
>PRK15384 type III secretion system protein; Provisional
Probab=94.48 E-value=0.084 Score=49.28 Aligned_cols=77 Identities=25% Similarity=0.422 Sum_probs=52.2
Q ss_pred hHhHHHHHHHHHcC-------------------cEEEeCCceecccchhhhc--cccccccccccCCccccccceEEec-
Q 042952 166 LSNLIRLAVLYKYG-------------------GVYLDTDFIVLKDFKGLRN--AIGPQEVDQATRKWKTLNNAALVFD- 223 (349)
Q Consensus 166 ~SD~~R~~lLyk~G-------------------GiYlD~Dv~~lkpl~~l~~--~~g~e~~~~~~~~~~~l~n~v~~~~- 223 (349)
-=|++|-+.|-|-| -||||+|+++..-|..+.. -+...-.. ..+...+.||+|+..
T Consensus 186 wFDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r--~~~~~slENg~I~VnR 263 (336)
T PRK15384 186 WFDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVER--IDGRASMENGIIAVDR 263 (336)
T ss_pred hhHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCCceEEEEEe--cCCceecccceEEEcc
Confidence 34899988887754 3899999999988776532 11111000 011246778887665
Q ss_pred CCCHHHHHHHHHHHHhcCCCc
Q 042952 224 KGHPILFDFLQEFATTFDGNT 244 (349)
Q Consensus 224 ~~hp~l~~~l~~~~~~~~~~~ 244 (349)
.+||.+.+-|+.+....++..
T Consensus 264 snHPALl~GL~iMhsK~da~P 284 (336)
T PRK15384 264 NNHPALLAGLEIMHTKFDADP 284 (336)
T ss_pred CCCHHHHhhHHHhhcCCCCCc
Confidence 599999999999998876654
No 10
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=91.40 E-value=0.62 Score=44.71 Aligned_cols=106 Identities=11% Similarity=0.156 Sum_probs=62.7
Q ss_pred HHHHHHHHH--cC-cEEEeCCceecccchhhhccc-cccccccccCCccccccceEEecCCCHHHHHHHHHHHHhcCCCc
Q 042952 169 LIRLAVLYK--YG-GVYLDTDFIVLKDFKGLRNAI-GPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNT 244 (349)
Q Consensus 169 ~~R~~lLyk--~G-GiYlD~Dv~~lkpl~~l~~~~-g~e~~~~~~~~~~~l~n~v~~~~~~hp~l~~~l~~~~~~~~~~~ 244 (349)
+.|+.+... |- -+|||+|++|+++++.|...- ...-..+ ...| .+|.|+|...|.--....+++.+.+......
T Consensus 81 ~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap-~~~~-~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~ 158 (278)
T cd06914 81 LTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAP-RAYW-KFASHLMVIKPSKEAFKELMTEILPAYLNKK 158 (278)
T ss_pred HHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeee-cCcc-eecceeEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 666655432 32 589999999999999986421 0000000 0112 7899999999999888888888876432111
Q ss_pred cCccccHHHHHHHHHHhCCCCCceEEccCCccc
Q 042952 245 WGHNGPYMLTRVTRRVGNTPGYNLTILGLEAFY 277 (349)
Q Consensus 245 w~~tGP~llt~v~~~~~~~~~~~i~ilP~~~Fy 277 (349)
...--.++..++....+...-.+.++|...+.
T Consensus 159 -~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~ 190 (278)
T cd06914 159 -NEYDMDLINEEFYNSKQLFKPSVLVLPHRQYG 190 (278)
T ss_pred -CCCChHHHHHHHhCCccccCcceEEcCccccc
Confidence 01112466666654321111147888876443
No 11
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=91.03 E-value=0.31 Score=45.31 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=54.1
Q ss_pred cEEEeCCceecccchhhhcc---ccccccccccCCccccccceEEecCCCHHHHHHHHHHHHhcCCCccCccccHHHHHH
Q 042952 180 GVYLDTDFIVLKDFKGLRNA---IGPQEVDQATRKWKTLNNAALVFDKGHPILFDFLQEFATTFDGNTWGHNGPYMLTRV 256 (349)
Q Consensus 180 GiYlD~Dv~~lkpl~~l~~~---~g~e~~~~~~~~~~~l~n~v~~~~~~hp~l~~~l~~~~~~~~~~~w~~tGP~llt~v 256 (349)
=+|||+|++++++++++.+. ++..... .....+|.|+|.+.++......+++.+.+... ....--.++..+
T Consensus 93 vlylD~D~~v~~~i~~Lf~~~~~~~a~~d~---~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~---~~~~DQdiLN~~ 166 (240)
T cd02537 93 VVFLDADTLVLRNIDELFDLPGEFAAAPDC---GWPDLFNSGVFVLKPSEETFNDLLDALQDTPS---FDGGDQGLLNSY 166 (240)
T ss_pred EEEEeCCeeEccCHHHHhCCCCceeeeccc---CccccccceEEEEcCCHHHHHHHHHHHhccCC---CCCCCHHHHHHH
Confidence 48999999999999998653 2221111 00146899999999998888888888775421 111223466666
Q ss_pred HHHHhCCCCCceEEccCC
Q 042952 257 TRRVGNTPGYNLTILGLE 274 (349)
Q Consensus 257 ~~~~~~~~~~~i~ilP~~ 274 (349)
++..+ .+..+|+.
T Consensus 167 ~~~~~-----~~~~l~~~ 179 (240)
T cd02537 167 FSDRG-----IWKRLPFT 179 (240)
T ss_pred HcCCC-----CEeECCcc
Confidence 54211 26777776
No 12
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=90.89 E-value=0.72 Score=45.31 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=64.0
Q ss_pred eeEEEEecCCCCCCCHHHHHHHHHHHHHCCCC--eEEEEeCCCCCccccccchhhhhc-cccEEEeCCChhhhhcCCchH
Q 042952 68 IQFFMVWLSPARIFRPRDFLAVETLMKANPHS--CLVLISRSLDTRRGYKILKPLLDL-GFKILAVTPDLASLVKDTPAE 144 (349)
Q Consensus 68 ~~I~~~W~sg~~~l~~r~~~aIeS~~r~nP~~--~V~v~s~~~~~~~g~~~l~~~~~~-~~nV~~~~~d~~~~f~~tP~~ 144 (349)
..++.+-..... +-+--.-+|-|+..+||+. ++.|+++..... ....+..+.+. +.+|.+..+|.+ .+++.|.
T Consensus 24 ~~i~Iv~~~D~n-y~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e-~~~~l~~l~~~~~~~i~~~~id~~-~~~~~~~- 99 (334)
T PRK15171 24 NSLDIAYGIDKN-FLFGCGVSIASVLLNNPDKSLVFHVFTDYISDA-DKQRFSALAKQYNTRINIYLINCE-RLKSLPS- 99 (334)
T ss_pred CceeEEEECcHh-hHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHH-HHHHHHHHHHhcCCeEEEEEeCHH-HHhCCcc-
Confidence 456666655433 3334445689999999985 456666543321 11233444433 446777766653 2222221
Q ss_pred HHHHhhhcCCCCCCCccchhhhHhHHHHHHHH----HcC-cEEEeCCceecccchhhhc
Q 042952 145 TWLKQIKDGERDPGKISLSVQLSNLIRLAVLY----KYG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 145 ~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lLy----k~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
... ...+=++|+.+-- .+. =+|||+|++|..++++|.+
T Consensus 100 ------------~~~----~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 100 ------------TKN----WTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred ------------cCc----CCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 011 1356677885433 233 5899999999999998853
No 13
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=90.56 E-value=1.2 Score=41.86 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=56.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHHCC-CCeEEEEeCCCCCccccccchhhhhc-cccEEEeCCChhhhhcCCchHHH
Q 042952 69 QFFMVWLSPARIFRPRDFLAVETLMKANP-HSCLVLISRSLDTRRGYKILKPLLDL-GFKILAVTPDLASLVKDTPAETW 146 (349)
Q Consensus 69 ~I~~~W~sg~~~l~~r~~~aIeS~~r~nP-~~~V~v~s~~~~~~~g~~~l~~~~~~-~~nV~~~~~d~~~~f~~tP~~~w 146 (349)
+||.+ .+ .+..-.-...++-|+..+|. ..++.|+++.... ...+.+..+.+. +.++.++.+|... |
T Consensus 2 ni~~~-~~-~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~-e~~~~l~~~~~~~~~~i~~i~i~~~~---------~ 69 (248)
T cd06432 2 NIFSV-AS-GHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSP-QFKEFLPEMAKEYGFEYELVTYKWPR---------W 69 (248)
T ss_pred eEEEE-cC-cHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCH-HHHHHHHHHHHHhCCceEEEEecChh---------h
Confidence 57777 33 33333334556899988874 4556677764332 112234444443 4566666655322 2
Q ss_pred HHhhhcCCCCCCCccchhhhHhHHHHHH---HHH-cC-cEEEeCCceecccchhhhc
Q 042952 147 LKQIKDGERDPGKISLSVQLSNLIRLAV---LYK-YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 147 ~~~~~~g~~~~~~~~~~a~~SD~~R~~l---Lyk-~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
+...... .. ...+ +.|+.+ |-. .+ =+|||+|++|..++.+|.+
T Consensus 70 ~~~~~~~-----~~---~~~~-y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~ 117 (248)
T cd06432 70 LHKQTEK-----QR---IIWG-YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMD 117 (248)
T ss_pred hhccccc-----ch---hHHH-HHHHHHHHhhhhccCEEEEEcCCceecccHHHHHh
Confidence 2210000 00 0011 333322 222 33 5899999999999999864
No 14
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=89.98 E-value=0.85 Score=42.24 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHCC--CCeEEEEeCCCCCccccccchhhhhc-cccEEEeCCChhhhhcCCchHHHHHhhhcCCCCCCCcc
Q 042952 85 DFLAVETLMKANP--HSCLVLISRSLDTRRGYKILKPLLDL-GFKILAVTPDLASLVKDTPAETWLKQIKDGERDPGKIS 161 (349)
Q Consensus 85 ~~~aIeS~~r~nP--~~~V~v~s~~~~~~~g~~~l~~~~~~-~~nV~~~~~d~~~~f~~tP~~~w~~~~~~g~~~~~~~~ 161 (349)
-+.++.|+.++++ ...+.++++... ......|+.+... +.+|.++.++..... ..+. ..+.+
T Consensus 15 ~~~~l~Sl~~~~~~~~~~~~il~~~is-~~~~~~L~~~~~~~~~~i~~~~i~~~~~~-~~~~------------~~~~~- 79 (248)
T cd04194 15 LAVTIKSILANNSKRDYDFYILNDDIS-EENKKKLKELLKKYNSSIEFIKIDNDDFK-FFPA------------TTDHI- 79 (248)
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCC-HHHHHHHHHHHHhcCCeEEEEEcCHHHHh-cCCc------------ccccc-
Confidence 3445899999999 566677765422 1112234444332 556777766542211 1110 01111
Q ss_pred chhhhHhHHHHHHHHHcC----cEEEeCCceecccchhhhc------ccccccccc------------ccCCccccccce
Q 042952 162 LSVQLSNLIRLAVLYKYG----GVYLDTDFIVLKDFKGLRN------AIGPQEVDQ------------ATRKWKTLNNAA 219 (349)
Q Consensus 162 ~~a~~SD~~R~~lLyk~G----GiYlD~Dv~~lkpl~~l~~------~~g~e~~~~------------~~~~~~~l~n~v 219 (349)
..+-+.|+.+-.... =+|||+|++++++++.|.+ .+++-.+.. .......+|.||
T Consensus 80 ---~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv 156 (248)
T cd04194 80 ---SYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGV 156 (248)
T ss_pred ---cHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecc
Confidence 246678888877665 5899999999999998853 122211100 001124688889
Q ss_pred EEecCC----CHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHhCCCCCceEEccCCc
Q 042952 220 LVFDKG----HPILFDFLQEFATTFDGNTWGHNGPYMLTRVTRRVGNTPGYNLTILGLEA 275 (349)
Q Consensus 220 ~~~~~~----hp~l~~~l~~~~~~~~~~~w~~tGP~llt~v~~~~~~~~~~~i~ilP~~~ 275 (349)
|..... ..+..++++.+.+... .....--.++..++.. .+..+|+.+
T Consensus 157 ~l~nl~~~r~~~~~~~~~~~~~~~~~--~~~~~DQd~LN~~~~~-------~~~~L~~~~ 207 (248)
T cd04194 157 LLINLKKWREENITEKLLELIKEYGG--RLIYPDQDILNAVLKD-------KILYLPPRY 207 (248)
T ss_pred hheeHHHHHHhhhHHHHHHHHHhCCC--ceeeCChHHHHHHHhC-------CeEEcCccc
Confidence 888754 3456666666665321 1111112355555432 377777654
No 15
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=87.53 E-value=3.4 Score=39.12 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=43.9
Q ss_pred hhHhHHHHHH---HHHcC-cEEEeCCceecccchhhhcc-ccccccccccCCccccccceEEecC----CCHHHHHHHHH
Q 042952 165 QLSNLIRLAV---LYKYG-GVYLDTDFIVLKDFKGLRNA-IGPQEVDQATRKWKTLNNAALVFDK----GHPILFDFLQE 235 (349)
Q Consensus 165 ~~SD~~R~~l---Lyk~G-GiYlD~Dv~~lkpl~~l~~~-~g~e~~~~~~~~~~~l~n~v~~~~~----~hp~l~~~l~~ 235 (349)
..+-++|+.+ |-..+ =+|||+|++|.+++++|.+. ++-...... ...+|.|||.... .+-+..++++.
T Consensus 98 s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav---~dyfNsGV~linl~~wr~~~i~~~~~~~ 174 (257)
T cd06429 98 SLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAV---ETSWNPGVNVVNLTEWRRQNVTETYEKW 174 (257)
T ss_pred CHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEE---hhhcccceEEEeHHHHHhccHHHHHHHH
Confidence 4677889887 33333 59999999999999998642 211100000 0257888988873 44455555555
Q ss_pred HHH
Q 042952 236 FAT 238 (349)
Q Consensus 236 ~~~ 238 (349)
+..
T Consensus 175 ~~~ 177 (257)
T cd06429 175 MEL 177 (257)
T ss_pred HHH
Confidence 543
No 16
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=85.61 E-value=0.78 Score=41.54 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=55.7
Q ss_pred hHhHHHHHHHHH---cC-cEEEeCCceecccchhhhc------ccccccc---------------ccccCCccccccceE
Q 042952 166 LSNLIRLAVLYK---YG-GVYLDTDFIVLKDFKGLRN------AIGPQEV---------------DQATRKWKTLNNAAL 220 (349)
Q Consensus 166 ~SD~~R~~lLyk---~G-GiYlD~Dv~~lkpl~~l~~------~~g~e~~---------------~~~~~~~~~l~n~v~ 220 (349)
.+=++|+.+... ++ =+|||+|++++++++.+.+ .++.-.. .........+|.|||
T Consensus 84 ~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~ 163 (250)
T PF01501_consen 84 PATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVM 163 (250)
T ss_dssp GGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEE
T ss_pred HHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEE
Confidence 344556655444 33 4999999999999998753 1222111 000122367899999
Q ss_pred EecCCCHHHHHHHHHHHHhc--CCCccCccccHHHHHHHHHHhCCCCCceEEccCCccccCCc
Q 042952 221 VFDKGHPILFDFLQEFATTF--DGNTWGHNGPYMLTRVTRRVGNTPGYNLTILGLEAFYPVNW 281 (349)
Q Consensus 221 ~~~~~hp~l~~~l~~~~~~~--~~~~w~~tGP~llt~v~~~~~~~~~~~i~ilP~~~FyPi~~ 281 (349)
.+.+...--..+.+.+.... .+......=-.++..++. ..+..+|..+=+...+
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~-------~~~~~L~~~~N~~~~~ 219 (250)
T PF01501_consen 164 LFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFY-------GNIKPLPCRYNCQPSW 219 (250)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHT-------TGEEEEEGGGSEEHHH
T ss_pred EEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhcc-------ceeEEECchhcccccc
Confidence 99877654444444443321 111111111124444443 1578888765544444
No 17
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=84.20 E-value=3.1 Score=39.84 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=22.9
Q ss_pred HHHHHHHHH----cC-cEEEeCCceecccchhhhc
Q 042952 169 LIRLAVLYK----YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 169 ~~R~~lLyk----~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
++|+.+--- +. =+|||+|++|..+++.|.+
T Consensus 85 y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~ 119 (280)
T cd06431 85 LMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK 119 (280)
T ss_pred HHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence 468876332 33 4999999999999998754
No 18
>PLN00176 galactinol synthase
Probab=81.49 E-value=1.9 Score=42.40 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHHHHHHHcC-cEEEeCCceecccchhhhcc----ccccccc--------------------c-------cc--CCcccc
Q 042952 170 IRLAVLYKYG-GVYLDTDFIVLKDFKGLRNA----IGPQEVD--------------------Q-------AT--RKWKTL 215 (349)
Q Consensus 170 ~R~~lLyk~G-GiYlD~Dv~~lkpl~~l~~~----~g~e~~~--------------------~-------~~--~~~~~l 215 (349)
+|+.-|-.|. =+|||+|++|+++++.|.+. +++-.+. + .. .....+
T Consensus 105 l~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~~~~~yF 184 (333)
T PLN00176 105 LRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLYF 184 (333)
T ss_pred hhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccCCCCCeE
Confidence 4444456665 69999999999999998642 1100000 0 00 011368
Q ss_pred ccceEEecCCCHHHHHHHHHHHH
Q 042952 216 NNAALVFDKGHPILFDFLQEFAT 238 (349)
Q Consensus 216 ~n~v~~~~~~hp~l~~~l~~~~~ 238 (349)
|.|+|.+.|..-....+++.+..
T Consensus 185 NSGVlvinps~~~~~~ll~~l~~ 207 (333)
T PLN00176 185 NAGMFVFEPSLSTYEDLLETLKI 207 (333)
T ss_pred EeEEEEEEcCHHHHHHHHHHHHh
Confidence 89999999998887888876653
No 19
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=76.05 E-value=7.1 Score=38.36 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCC--CCeEEEEeCCCCCccc---cccchhhhhccccEEEeCCChhhhhcCCchHHHHHhhhcCCCCCCC
Q 042952 85 DFLAVETLMKANP--HSCLVLISRSLDTRRG---YKILKPLLDLGFKILAVTPDLASLVKDTPAETWLKQIKDGERDPGK 159 (349)
Q Consensus 85 ~~~aIeS~~r~nP--~~~V~v~s~~~~~~~g---~~~l~~~~~~~~nV~~~~~d~~~~f~~tP~~~w~~~~~~g~~~~~~ 159 (349)
..-||-|+..+|+ ..++.++.+......- .+++.+|. -.+.+..+|.+. |+.+|. . .+ .
T Consensus 17 ~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~---~~i~~~~id~~~-~~~~~~----~----~~----~ 80 (325)
T COG1442 17 AGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFK---SFIVLEVIDIEP-FLDYPP----F----TK----R 80 (325)
T ss_pred HHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhc---cceeeEEEechh-hhcccc----c----cc----c
Confidence 3446999999999 6777777665443210 12223331 234444555532 223331 1 00 1
Q ss_pred ccchhhhHhHHHHHHHHHcCc----EEEeCCceecccchhhh
Q 042952 160 ISLSVQLSNLIRLAVLYKYGG----VYLDTDFIVLKDFKGLR 197 (349)
Q Consensus 160 ~~~~a~~SD~~R~~lLyk~GG----iYlD~Dv~~lkpl~~l~ 197 (349)
+ ..+=++||.+=--..- +|+|+|++|.++|+.+.
T Consensus 81 ~----s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf 118 (325)
T COG1442 81 F----SKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELF 118 (325)
T ss_pred h----HHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHH
Confidence 2 1556788877655554 99999999999999875
No 20
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=74.87 E-value=15 Score=33.00 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=61.6
Q ss_pred hhhHhHHHHHHHHHcCcEEEeCCceecccchhhh-c---cccccccccc----cCCccccccceEEecCCCHHHHHHHHH
Q 042952 164 VQLSNLIRLAVLYKYGGVYLDTDFIVLKDFKGLR-N---AIGPQEVDQA----TRKWKTLNNAALVFDKGHPILFDFLQE 235 (349)
Q Consensus 164 a~~SD~~R~~lLyk~GGiYlD~Dv~~lkpl~~l~-~---~~g~e~~~~~----~~~~~~l~n~v~~~~~~hp~l~~~l~~ 235 (349)
..+..+++-.+-.-+-=+|+|+|++.+++..++. + -+....+... ......+|.|++.+++.- -.+++++.
T Consensus 53 ~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~-~~~~~~~~ 131 (212)
T PF03407_consen 53 WLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTP-RTIAFLED 131 (212)
T ss_pred HHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCH-HHHHHHHH
Confidence 4666777655555566799999999999766554 2 0111111000 011234677888777644 44444444
Q ss_pred HHHhcC--CCccCccccHHHHHHHHHHhCC-CCCceEEccCCccc
Q 042952 236 FATTFD--GNTWGHNGPYMLTRVTRRVGNT-PGYNLTILGLEAFY 277 (349)
Q Consensus 236 ~~~~~~--~~~w~~tGP~llt~v~~~~~~~-~~~~i~ilP~~~Fy 277 (349)
...... +..| --.++..++.+.... .+..+.++|+..|-
T Consensus 132 w~~~~~~~~~~~---DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~ 173 (212)
T PF03407_consen 132 WLERMAESPGCW---DQQAFNELLREQAARYGGLRVRFLPPSLFP 173 (212)
T ss_pred HHHHHHhCCCcc---hHHHHHHHHHhcccCCcCcEEEEeCHHHee
Confidence 443321 1111 345788888775321 23368999998883
No 21
>PLN02718 Probable galacturonosyltransferase
Probab=72.87 E-value=14 Score=39.24 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred eeEEEEecCCCCCCCHHHHHH--HHHHHHH--CCC-CeEEEEeCCCCCccccccchhhhhc-cccEEEeCCChhhhhcCC
Q 042952 68 IQFFMVWLSPARIFRPRDFLA--VETLMKA--NPH-SCLVLISRSLDTRRGYKILKPLLDL-GFKILAVTPDLASLVKDT 141 (349)
Q Consensus 68 ~~I~~~W~sg~~~l~~r~~~a--IeS~~r~--nP~-~~V~v~s~~~~~~~g~~~l~~~~~~-~~nV~~~~~d~~~~f~~t 141 (349)
.-+|++..+.. + .+|| |.|+..+ +|+ ..+.|+++..... .-..+..+... +.+|++..+|.-..+.+.
T Consensus 312 ~~~Hia~~sDN--v---laasVvInSil~Ns~np~~ivFHVvTD~is~~-~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~ 385 (603)
T PLN02718 312 DLYHYVVFSDN--V---LACSVVVNSTISSSKEPEKIVFHVVTDSLNYP-AISMWFLLNPPGKATIQILNIDDMNVLPAD 385 (603)
T ss_pred cceeEEEEcCC--c---eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHH-HHHHHHHhCCCCCcEEEEEecchhcccccc
Confidence 44677776665 2 2344 7999887 665 3345566643211 00111122222 347777766541111100
Q ss_pred chHHHHHhhhcCCCCCCCccchhhhHhHHHHHHHHH---cC-cEEEeCCceecccchhhhc
Q 042952 142 PAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYK---YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 142 P~~~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lLyk---~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
- ...++.. ....++ ....+-++|+.+-.- .. =||||+|++|.+++..|.+
T Consensus 386 ~-~~~lk~l--~s~~~~----~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~ 439 (603)
T PLN02718 386 Y-NSLLMKQ--NSHDPR----YISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWS 439 (603)
T ss_pred c-hhhhhhc--cccccc----cccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhc
Confidence 0 0111111 111111 134678899887432 22 4899999999999999865
No 22
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=59.82 E-value=4.4 Score=39.44 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred HHHHHH---HHHc-CcEEEeCCceecccchhhhc
Q 042952 169 LIRLAV---LYKY-GGVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 169 ~~R~~l---Lyk~-GGiYlD~Dv~~lkpl~~l~~ 198 (349)
+.|+.+ |-.. -=+|||+|++|+.|+++|.+
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence 777764 3332 46999999999999998754
No 23
>PLN02829 Probable galacturonosyltransferase
Probab=58.33 E-value=15 Score=39.11 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=27.7
Q ss_pred hhhHhHHHHHH--HHH-cC-cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAV--LYK-YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~l--Lyk-~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
.....++|+.+ +.. .. =||||+|++|.++|+.|.+
T Consensus 440 lS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~ 478 (639)
T PLN02829 440 LSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWS 478 (639)
T ss_pred hhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHh
Confidence 46778999987 433 22 4899999999999999864
No 24
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=58.11 E-value=5.1 Score=37.10 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCC-CeEEEEeCCCCCccccccchhhhh-ccccEEEeCCChhhhhcCCchHHHHHhhhcCCCCCCCcc
Q 042952 84 RDFLAVETLMKANPH-SCLVLISRSLDTRRGYKILKPLLD-LGFKILAVTPDLASLVKDTPAETWLKQIKDGERDPGKIS 161 (349)
Q Consensus 84 r~~~aIeS~~r~nP~-~~V~v~s~~~~~~~g~~~l~~~~~-~~~nV~~~~~d~~~~f~~tP~~~w~~~~~~g~~~~~~~~ 161 (349)
-...++.|+.+++++ ..+.|+++... ....+.|+.+.+ .+.++.++.++...... .+ .. +. .
T Consensus 15 ~~~v~i~Sl~~~~~~~~~~~il~~~is-~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~----~~----~~----~-- 78 (246)
T cd00505 15 GAIVLMKSVLRHRTKPLRFHVLTNPLS-DTFKAALDNLRKLYNFNYELIPVDILDSVD-SE----HL----KR----P-- 78 (246)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEcccc-HHHHHHHHHHHhccCceEEEEeccccCcch-hh----hh----cC----c--
Confidence 345568999999885 45566665422 212223443332 34567777665422110 00 00 00 0
Q ss_pred chhhhHhHHHHHHHH--H-cC-cEEEeCCceecccchhhhcc------ccccccccc-------------cCCccccccc
Q 042952 162 LSVQLSNLIRLAVLY--K-YG-GVYLDTDFIVLKDFKGLRNA------IGPQEVDQA-------------TRKWKTLNNA 218 (349)
Q Consensus 162 ~~a~~SD~~R~~lLy--k-~G-GiYlD~Dv~~lkpl~~l~~~------~g~e~~~~~-------------~~~~~~l~n~ 218 (349)
...+=+.|+.+-. . +. =+|||+|+++++++++|.+. +|+-.+... ......+|.|
T Consensus 79 --~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsG 156 (246)
T cd00505 79 --IKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSG 156 (246)
T ss_pred --cccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeee
Confidence 1133456776622 2 33 48999999999999998541 222111000 0112468999
Q ss_pred eEEecCCCHHHHHHHHHHHHhcC--CCccCccccHHHHHHHHHHhCCCCCceEEccCCccc
Q 042952 219 ALVFDKGHPILFDFLQEFATTFD--GNTWGHNGPYMLTRVTRRVGNTPGYNLTILGLEAFY 277 (349)
Q Consensus 219 v~~~~~~hp~l~~~l~~~~~~~~--~~~w~~tGP~llt~v~~~~~~~~~~~i~ilP~~~Fy 277 (349)
||.....---...+++...+... .......-..++..++...+ ..+..+|+.+=+
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~----~~i~~L~~~wN~ 213 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVP----FIVKSLPCIWNV 213 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCC----CeEEECCCeeeE
Confidence 99988765433333333332210 01122334567777765432 137777776433
No 25
>PLN02870 Probable galacturonosyltransferase
Probab=53.89 E-value=9.7 Score=39.66 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=27.5
Q ss_pred hhhHhHHHHHHHHH---cC-cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAVLYK---YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~lLyk---~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
.....++|+.+=.- .. =+|||+|++|.++|.+|.+
T Consensus 326 lS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~ 364 (533)
T PLN02870 326 ISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWD 364 (533)
T ss_pred cCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhh
Confidence 45778999877332 22 5899999999999999865
No 26
>PLN02659 Probable galacturonosyltransferase
Probab=53.45 E-value=9.8 Score=39.64 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=27.7
Q ss_pred hhhHhHHHHHH--HHH-cC-cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAV--LYK-YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~l--Lyk-~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
.....++|+.+ |.. .. =+|||+|++|.++|++|.+
T Consensus 327 lS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~ 365 (534)
T PLN02659 327 NSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWD 365 (534)
T ss_pred eeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHh
Confidence 45778999977 332 33 5899999999999999865
No 27
>PLN02867 Probable galacturonosyltransferase
Probab=49.18 E-value=12 Score=39.04 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=28.4
Q ss_pred hhhHhHHHHHHHHHcC----cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAVLYKYG----GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~lLyk~G----GiYlD~Dv~~lkpl~~l~~ 198 (349)
...-.++|+.+=.-+. =+|||.|++|.++|++|.+
T Consensus 328 lS~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwd 366 (535)
T PLN02867 328 LSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWE 366 (535)
T ss_pred hhHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHh
Confidence 4567889998766443 4899999999999999864
No 28
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=47.56 E-value=25 Score=37.42 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=28.2
Q ss_pred hhhhHhHHHHHHHHHc---C-cEEEeCCceecccchhhhc
Q 042952 163 SVQLSNLIRLAVLYKY---G-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 163 ~a~~SD~~R~~lLyk~---G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
+.....++|+.+-.-+ . =||||+|++|.++|..|.+
T Consensus 457 ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~ 496 (657)
T PLN02910 457 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 496 (657)
T ss_pred hhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHh
Confidence 3567899998773322 2 5899999999999999864
No 29
>PLN02742 Probable galacturonosyltransferase
Probab=42.54 E-value=20 Score=37.54 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=27.8
Q ss_pred hhhHhHHHHHHHHHc---C-cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAVLYKY---G-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~lLyk~---G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
.....++|+.+-.-+ + =||||+|++|.+++.+|.+
T Consensus 336 ~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~ 374 (534)
T PLN02742 336 LSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFS 374 (534)
T ss_pred ccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhc
Confidence 467889998874333 2 5999999999999999865
No 30
>PLN02769 Probable galacturonosyltransferase
Probab=41.10 E-value=19 Score=38.31 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.4
Q ss_pred hhhHhHHHHHH--HHH-cC-cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAV--LYK-YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~l--Lyk-~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
.....++|+.+ |.. .. =||||+|++|.++|.+|.+
T Consensus 435 iS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 435 LSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred ccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhc
Confidence 45778999887 333 23 5899999999999999864
No 31
>PLN02523 galacturonosyltransferase
Probab=36.66 E-value=18 Score=37.87 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=27.6
Q ss_pred hhhHhHHHHHHHHH---cC-cEEEeCCceecccchhhhc
Q 042952 164 VQLSNLIRLAVLYK---YG-GVYLDTDFIVLKDFKGLRN 198 (349)
Q Consensus 164 a~~SD~~R~~lLyk---~G-GiYlD~Dv~~lkpl~~l~~ 198 (349)
...+.++|+.+=-- .. =+|||+|++|.++|+.|.+
T Consensus 360 lS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~ 398 (559)
T PLN02523 360 LSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWK 398 (559)
T ss_pred hhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHh
Confidence 35678899977443 33 5899999999999999865
No 32
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=27.69 E-value=32 Score=34.56 Aligned_cols=24 Identities=33% Similarity=0.779 Sum_probs=22.3
Q ss_pred CceEEccCCccccCCchhhHhhcc
Q 042952 266 YNLTILGLEAFYPVNWVQIKRFFK 289 (349)
Q Consensus 266 ~~i~ilP~~~FyPi~~~~~~~~f~ 289 (349)
++|..++++.|||++|.+|+++|.
T Consensus 335 ~~vn~~~i~~fy~iP~~ew~~~~~ 358 (409)
T KOG1928|consen 335 YPVNWLEIQAFYAIPWTEWDRKFV 358 (409)
T ss_pred CceeeeccccccccchhHhhhhhh
Confidence 479999999999999999999994
No 33
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=22.19 E-value=1.6e+02 Score=25.53 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=38.8
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCccccccchhhhhccccEEEeCCChh
Q 042952 69 QFFMVWLSPARIFRPRDFLAVETLMKANPHSCLVLISRSLDTRRGYKILKPLLDLGFKILAVTPDLA 135 (349)
Q Consensus 69 ~I~~~W~sg~~~l~~r~~~aIeS~~r~nP~~~V~v~s~~~~~~~g~~~l~~~~~~~~nV~~~~~d~~ 135 (349)
-+|..=+|... + .....+|.|.++..|+-.++|++=.+... -++.+.+.-.|++++..|..
T Consensus 62 vvfVSa~S~~h-~-~~~~~~i~si~~~~P~~k~ilY~LgL~~~----~i~~L~~~~~n~evr~Fn~s 122 (142)
T PF07801_consen 62 VVFVSATSDNH-F-NESMKSISSIRKFYPNHKIILYDLGLSEE----QIKKLKKNFCNVEVRKFNFS 122 (142)
T ss_pred cEEEEEecchH-H-HHHHHHHHHHHHHCCCCcEEEEeCCCCHH----HHHHHHhcCCceEEEECCCc
Confidence 34555555432 3 24455689999999999999997554432 23444332257888887774
No 34
>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=21.92 E-value=36 Score=31.04 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.3
Q ss_pred HHhcCCCcccccC
Q 042952 336 IKSHCILCQDSYD 348 (349)
Q Consensus 336 ~~~~cp~~~~~~~ 348 (349)
.+-|||.|+++|.
T Consensus 133 VklYCP~C~dvY~ 145 (216)
T KOG3092|consen 133 VKLYCPSCEDVYI 145 (216)
T ss_pred EEEeCCCcccccc
Confidence 3458999999984
No 35
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=21.59 E-value=1.4e+02 Score=23.48 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=30.4
Q ss_pred ceeEEEEecCCCCCC---CHHHHHH-HHHHHHHCCCCeEEEEe
Q 042952 67 AIQFFMVWLSPARIF---RPRDFLA-VETLMKANPHSCLVLIS 105 (349)
Q Consensus 67 ~~~I~~~W~sg~~~l---~~r~~~a-IeS~~r~nP~~~V~v~s 105 (349)
+.++|..|..+.-.. .+.|..+ ||.+.+.||+.=|+|+-
T Consensus 25 ~~rywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig 67 (84)
T cd00307 25 ARRFRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIG 67 (84)
T ss_pred CCccHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 478899998776655 3555555 99999999999998873
No 36
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=21.31 E-value=29 Score=23.02 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=7.6
Q ss_pred HcCcEEEeCC
Q 042952 177 KYGGVYLDTD 186 (349)
Q Consensus 177 k~GGiYlD~D 186 (349)
+-||+|+|.+
T Consensus 24 ~C~G~W~d~~ 33 (41)
T PF13453_consen 24 SCGGIWFDAG 33 (41)
T ss_pred CCCeEEccHH
Confidence 4688888865
No 37
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=20.70 E-value=90 Score=32.71 Aligned_cols=46 Identities=33% Similarity=0.507 Sum_probs=31.7
Q ss_pred hcCCchHHHHHhhhcCCCCCCCccchhhhHhHHHHHHHHHcCcEEEeCCcee
Q 042952 138 VKDTPAETWLKQIKDGERDPGKISLSVQLSNLIRLAVLYKYGGVYLDTDFIV 189 (349)
Q Consensus 138 f~~tP~~~w~~~~~~g~~~~~~~~~~a~~SD~~R~~lLyk~GGiYlD~Dv~~ 189 (349)
|+..+...+|..-..- .|. +|..||++|+.+|++|||||+|+|+++
T Consensus 187 ~~~~~~~~~Y~~El~l---RgN---~AAASDilRl~iL~~~GGIY~D~D~LP 232 (514)
T PF12919_consen 187 FKDKENKDNYQQELLL---RGN---YAAASDILRLYILKEYGGIYLDVDMLP 232 (514)
T ss_dssp CCTHHHHHHHHHHHHT---S-----HHHHHHHHHHHHHHHH-EEEE-TT-EE
T ss_pred ccchHHHHHHHHHHHH---CcC---hhhHHHHHHHHHHHHhCCEEEecccCC
Confidence 4556666777653212 233 489999999999999999999999987
Done!