Your job contains 1 sequence.
>042954
MKMGEVVVSSEGGMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISAL
LRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV
IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQNLHDVYH
KGGAISENNMASSHSSDYAASSQKNKGSEKVSDAQSSRTSSPYLEAESAYMQNMQGLSQL
KCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELIVSEKLNRSGSEVAQCDDAL
RLEEDYGCVKTMPQGEGEGPKNDRINADITYGIHGCNDELIEPSSGAIDLIGTFDNHQEV
PDKLSTPNDGIPDKLSTLHNRTKKCEFSPHLELSLRKSFPSTSNDQGNDERHTLNHSAAS
AFSWYNNSKACPTPTSNSAELKDGSSKSDEILSNQLSENATGGFQPCCATSSNSRENMTS
LVMGQSEQAAVAFAGPHLGFIPVPGVRFDNIFAGYSHIFPSIFYTKSGLQPAWSPNSSHQ
KEHHRFPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGRPLEQLRHGSPAGN
QSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARH
SSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKDANADGCP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042954
(720 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 577 5.8e-84 3
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 435 2.9e-38 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 283 1.1e-34 2
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 212 1.6e-18 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 244 2.8e-18 2
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 241 1.1e-17 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 235 3.7e-16 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 236 2.0e-15 2
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 220 9.8e-15 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 195 2.1e-14 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 209 6.5e-14 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 191 8.8e-14 2
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 191 1.1e-13 2
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 211 2.7e-12 2
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 175 3.0e-12 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 170 1.0e-11 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 149 2.0e-11 2
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 157 2.5e-10 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 151 1.1e-09 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 161 1.1e-09 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 146 3.8e-09 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 160 5.1e-09 1
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ... 144 6.2e-09 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 143 8.0e-09 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 155 8.3e-09 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 156 5.0e-08 1
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 135 5.7e-08 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 134 7.3e-08 1
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 152 7.4e-08 1
UNIPROTKB|Q48GE0 - symbol:fleR "Sigma-54 dependent DNA-bi... 159 8.7e-08 2
UNIPROTKB|Q884Y0 - symbol:fleR "Sigma-54 dependent transc... 159 8.7e-08 2
UNIPROTKB|Q4KG71 - symbol:fleR "Sigma-54 dependent DNA-bi... 162 1.0e-07 2
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 132 1.2e-07 1
TIGR_CMR|CPS_0681 - symbol:CPS_0681 "DNA-binding response... 147 1.4e-07 1
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 154 1.9e-07 1
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 154 1.9e-07 1
TIGR_CMR|GSU_2041 - symbol:GSU_2041 "sigma-54 dependent D... 152 2.1e-07 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 127 2.6e-07 2
UNIPROTKB|Q9KQ67 - symbol:VC_2135 "Sigma-54 dependent res... 151 3.0e-07 1
TIGR_CMR|VC_2135 - symbol:VC_2135 "flagellar regulatory p... 151 3.0e-07 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 128 3.2e-07 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 128 3.2e-07 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 128 3.2e-07 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 128 3.2e-07 1
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 128 3.2e-07 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 127 4.1e-07 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 127 4.1e-07 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 127 4.1e-07 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 127 4.1e-07 1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 143 4.6e-07 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 126 5.3e-07 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 126 5.3e-07 1
UNIPROTKB|Q9KM66 - symbol:cqsS "CAI-1 autoinducer sensor ... 151 5.3e-07 1
TIGR_CMR|VC_A0522 - symbol:VC_A0522 "sensor histidine kin... 151 5.3e-07 1
UNIPROTKB|Q9KN24 - symbol:VC_A0142 "C4-dicarboxylate tran... 151 6.1e-07 3
TIGR_CMR|VC_A0142 - symbol:VC_A0142 "C4-dicarboxylate tra... 151 6.1e-07 3
DICTYBASE|DDB_G0268640 - symbol:DDB_G0268640 "unknown" sp... 151 6.4e-07 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 125 6.8e-07 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 125 6.8e-07 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 125 6.8e-07 1
TIGR_CMR|CBU_1227 - symbol:CBU_1227 "DNA-binding response... 140 7.0e-07 1
TIGR_CMR|GSU_0879 - symbol:GSU_0879 "chemotaxis protein C... 144 7.2e-07 1
TIGR_CMR|GSU_1129 - symbol:GSU_1129 "sigma-54 dependent D... 147 7.5e-07 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 147 9.4e-07 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 147 1.0e-06 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 145 1.2e-06 1
UNIPROTKB|Q8ECB3 - symbol:flrC "Two component signal tran... 145 1.2e-06 1
TIGR_CMR|SO_3230 - symbol:SO_3230 "flagellar regulatory p... 145 1.2e-06 1
TIGR_CMR|BA_3261 - symbol:BA_3261 "DNA-binding response r... 137 1.4e-06 1
UNIPROTKB|Q48P87 - symbol:pilG "Type IV pilus response re... 122 1.4e-06 1
TAIR|locus:2164718 - symbol:BBX8 "B-box domain protein 8"... 120 1.6e-06 2
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 121 1.8e-06 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 121 1.8e-06 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 121 1.8e-06 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 140 2.8e-06 1
TIGR_CMR|CHY_1855 - symbol:CHY_1855 "sigma-54 dependent t... 141 3.3e-06 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 118 3.8e-06 1
TIGR_CMR|GSU_1038 - symbol:GSU_1038 "sensory box histidin... 141 4.2e-06 1
TIGR_CMR|CHY_2047 - symbol:CHY_2047 "DNA-binding response... 133 4.7e-06 1
TIGR_CMR|DET_0170 - symbol:DET_0170 "DNA-binding response... 133 4.8e-06 1
TIGR_CMR|GSU_1316 - symbol:GSU_1316 "response regulator" ... 137 4.8e-06 1
UNIPROTKB|Q9KS62 - symbol:VC_1398 "Chemotaxis protein Che... 116 6.2e-06 1
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp... 116 6.2e-06 1
TIGR_CMR|VC_1398 - symbol:VC_1398 "chemotaxis protein Che... 116 6.2e-06 1
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 132 6.6e-06 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 131 6.9e-06 1
TIGR_CMR|GSU_1658 - symbol:GSU_1658 "response regulator/G... 141 7.3e-06 2
TIGR_CMR|GSU_2915 - symbol:GSU_2915 "sigma-54 dependent D... 138 7.4e-06 1
TIGR_CMR|GSU_1285 - symbol:GSU_1285 "sensory box sensor h... 141 7.6e-06 1
UNIPROTKB|P0A5Z4 - symbol:mtrA "DNA-binding response regu... 131 7.7e-06 1
TIGR_CMR|GSU_1891 - symbol:GSU_1891 "response regulator" ... 138 7.9e-06 2
UNIPROTKB|P06628 - symbol:spo0F "Sporulation initiation p... 115 8.0e-06 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 115 8.0e-06 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 137 9.5e-06 1
TIGR_CMR|SO_4477 - symbol:SO_4477 "transcriptional regula... 130 1.0e-05 1
UNIPROTKB|Q52879 - symbol:cheY1 "CheY1" species:382 "Sino... 114 1.0e-05 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 130 1.1e-05 2
TIGR_CMR|GSU_0811 - symbol:GSU_0811 "nitrogen regulation ... 142 1.1e-05 2
UNIPROTKB|Q485M3 - symbol:flrC "Flagellar regulatory prot... 136 1.2e-05 1
TIGR_CMR|CPS_1500 - symbol:CPS_1500 "flagellar regulatory... 136 1.2e-05 1
WARNING: Descriptions of 132 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 577 (208.2 bits), Expect = 5.8e-84, Sum P(3) = 5.8e-84
Identities = 117/165 (70%), Positives = 138/165 (83%)
Query: 3 MGEVVV-SSEGGMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALL 61
MGE+VV SS+ GM+ K SSEVV+ WE +LP+ VLRVLLVE+D STRQII+ALL
Sbjct: 1 MGEIVVLSSDDGMETIKNRVK--SSEVVQ--WEKYLPKTVLRVLLVESDYSTRQIITALL 56
Query: 62 RKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121
RKC Y+V AV DGLAAWE LK + H+IDL+LTE++LPSISGFALL LVMEH+ CKNIPVI
Sbjct: 57 RKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVI 116
Query: 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166
MMS DSI MVLKCML+GAAD+LIKP+R+NEL+NLWQHVWRR +L
Sbjct: 117 MMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRRLTL 161
Score = 212 (79.7 bits), Expect = 5.8e-84, Sum P(3) = 5.8e-84
Identities = 41/49 (83%), Positives = 45/49 (91%)
Query: 662 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 710
SQR+AAL KFRLKRKDRC+DKKVRYQSRK LAEQRPRVKGQFVR V ++
Sbjct: 415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463
Score = 84 (34.6 bits), Expect = 5.8e-84, Sum P(3) = 5.8e-84
Identities = 43/152 (28%), Positives = 66/152 (43%)
Query: 329 ITYGIHGCNDELIEPSSGAIDLIGTFDNHQEVPDKLSTPNDGIPDKLSTLHNRTKKCEFS 388
I Y H ++L+E + ++D F +V L D PD + +R + C
Sbjct: 202 INYNGH---NKLME-NGKSVDERDEFKETFDVTMDLIGGIDKRPDSIYKDKSRDE-C-VG 255
Query: 389 PHLELSLRKSFPSTSNDQGNDERHTLNHSAASAFSWYNNSKACPTPTSNSAELKDGSSKS 448
P L LSL++S + +Q + L+ S ASAFS + SK+ E G K+
Sbjct: 256 PELGLSLKRSCSVSFENQDESKHQKLSLSDASAFSRFEESKSAEKAVVALEESTSGEPKT 315
Query: 449 DEILSNQLSENATGGFQPCCATSSNSRENMTS 480
S++ T Q TSSN +EN+ S
Sbjct: 316 PTE-SHEKLRKVTSD-QGSATTSSN-QENIGS 344
Score = 45 (20.9 bits), Expect = 7.2e-80, Sum P(3) = 7.2e-80
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 534 SPNSSHQKEHHRFPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGRPL--EQ 591
+P SH+K +++ S + E + + + + TV Q + P+ E
Sbjct: 315 TPTESHEKLRK---VTSDQGSATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVES 371
Query: 592 LRHGSP-----AGNQSSNSGLCNGLANNSSS 617
R + AG+QS+N G+ A SSS
Sbjct: 372 NREKAASKEVEAGSQSTNEGI----AGQSSS 398
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 435 (158.2 bits), Expect = 2.9e-38, P = 2.9e-38
Identities = 186/660 (28%), Positives = 273/660 (41%)
Query: 10 SEGGMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVA 69
S GG+ I L + ++ V WE FL +RVLLVE DD TR I++ALLR C Y V
Sbjct: 51 SSGGLQIPLSQQT--AATVC---WERFLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVV 105
Query: 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSI 129
+G+ AW+ L+ + ID+VLTEV +P +SG LL ++ H +NIPVIMMS HDS+
Sbjct: 106 EASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSM 165
Query: 130 SMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR-HSLLGGHVPQNLHDVYH--KGGAIS 186
+V KC+ KGA DFL+KP+R+NEL+ LWQHVWRR S G H K +I
Sbjct: 166 GLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKSIK 225
Query: 187 ENNMXXXXXXXXXXXX---QKNKGSEKVSDAQSSRTSSPYLEAESAYMQNMQGLSQLKCR 243
+++ + GS S AQSS T +S ++ C
Sbjct: 226 KSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVSLWDRVDSTCA 285
Query: 244 SASNTCSTDMERQNECAKLETESLMPESKTGGASDELIVSEKLNRSGSEVAQCDDALRLE 303
++ Q E E+ + K +++ + L S CD AL
Sbjct: 286 QVVHSNPEFPSNQLVAPPAEKETQEHDDKF----EDVTMGRDLEISIRR--NCDLALE-P 338
Query: 304 EDYGCVKT---MPQGEGEGPKNDRINADITYGIHGCNDELIEPSSGAIDLIG--TF---D 355
+D KT M Q + + + G + E PSS + G +F
Sbjct: 339 KDEPLSKTTGIMRQDNSFEKSSSKWKMKVGKGPLDLSSE--SPSSKQMHEDGGSSFKAMS 396
Query: 356 NHQEVPDKLSTPNDGIPDKLSTLHNRTKKCEFSPHLELSLRKSFPSTSNDQG--NDERHT 413
+H + + PN + L T K E H+E S K T +D D+R+
Sbjct: 397 SHLQDNREPEAPNTHLKT-LDTNEASVKISEELMHVEHS-SKRHRGTKDDGTLVRDDRNV 454
Query: 414 LNHSAASAFSWYNNSKACPTPTSNSAELKDGSSKSDEILSNQLSE--NATGGFQPCCATS 471
L S SAFS YN P SN+ ++ G+ S + N + T C +
Sbjct: 455 LRRSEGSAFSRYN-------PASNANKISGGNLGSTSLQDNNSQDLIKKTEAAYDCHSNM 507
Query: 472 SNSRENMTSLVMGQSEQAAVAFAGPHLGFIPVPGVRFDNIFAGYSHIFPSIFYTKSGLQP 531
+ S + +G S ++ + F PG + AG S + S F QP
Sbjct: 508 NESLPHNHRSHVG-SNNFDMSSTTENNAFTK-PGAPKVSS-AGSSSVKHSSF------QP 558
Query: 532 AWSPNSSHQKEHHRFPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGRPL-E 590
+ ++ ++ ++ P S VY T E N+N+V+ +V G
Sbjct: 559 LPCDHHNNHASYNLVHVAERKKLPPQC-GSSNVYNETIEGNNNTVNYSVNGSVSGSGHGS 617
Query: 591 QLRHGSPAGNQSS--NSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLF 648
+GS G + N G NG N + G S S S + + Q T F
Sbjct: 618 NGPYGSSNGMNAGGMNMGSDNGAGKNGN-GDGSGSGSGSGSGNLADENKISQREAALTKF 676
Score = 222 (83.2 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 70/197 (35%), Positives = 102/197 (51%)
Query: 524 YTKSGLQPAWSPNSSHQKEHHRF-PISASVHSNPD----VHDSEQ--VYGRTGEINHNSV 576
+TK G S SS K H F P+ H+N VH +E+ + + G + N
Sbjct: 535 FTKPGAPKVSSAGSSSVK-HSSFQPLPCDHHNNHASYNLVHVAERKKLPPQCG--SSNVY 591
Query: 577 DQTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTG 636
++T+ + + +GS +G+ ++G G +N ++G + N + +G G
Sbjct: 592 NETI--EGNNNTVNYSVNGSVSGSGHGSNGPY-GSSNGMNAGGMNMGSDNGAGKNGNGDG 648
Query: 637 TVPQNLNGCTLFIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQR 696
+ + +G G N SQR+AALTKFR KRK+RC+ KKVRYQSRK LAEQR
Sbjct: 649 SGSGSGSG------SG-NLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQR 701
Query: 697 PRVKGQFVRQVKNETKD 713
PRV+GQFVR+ T D
Sbjct: 702 PRVRGQFVRKTAAATDD 718
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 283 (104.7 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 53/135 (39%), Positives = 80/135 (59%)
Query: 34 ESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT 93
+ F+ R +R+LL + D ++ + LL +C Y+V AV + L ID++L
Sbjct: 11 DGFIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILA 70
Query: 94 EVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
E++LP G +L + + IPVIMMS D + +V+KC+ GAAD+L+KP+R NEL
Sbjct: 71 EIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNEL 130
Query: 154 RNLWQHVWRRHSLLG 168
NLW H+WRR +LG
Sbjct: 131 LNLWTHMWRRRRMLG 145
Score = 172 (65.6 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 654 NGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKD 713
N + +R+ AL KFR KR RC+DKK+RY +RK LAE+RPRVKGQFVR++ D
Sbjct: 523 NEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVD 582
Query: 714 AN 715
N
Sbjct: 583 LN 584
Score = 41 (19.5 bits), Expect = 5.7e-21, Sum P(2) = 5.7e-21
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 589 LEQLRHG-SPAGNQSSNSGLCNGLANNSSSGTYSRIDRN 626
+ + H SPAGN SN N L + R RN
Sbjct: 507 MSMVHHSWSPAGNPPSNEVRVNKLDRREEALLKFRRKRN 545
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 212 (79.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 41/49 (83%), Positives = 45/49 (91%)
Query: 662 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 710
SQR+AAL KFRLKRKDRC+DKKVRYQSRK LAEQRPRVKGQFVR V ++
Sbjct: 130 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 178
Score = 46 (21.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 534 SPNSSHQKEHHRFPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGRPL--EQ 591
+P SH+K + + S+ + E + + + + TV Q + P+ E
Sbjct: 30 TPTESHEKLRK---VRSDQGSSTTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVES 86
Query: 592 LRHGSP-----AGNQSSNSGLCNGLANNSSS 617
R + AG+QS+N G+ A SSS
Sbjct: 87 NREKAASKEVEAGSQSTNEGI----AGQSSS 113
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 244 (91.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 52/126 (41%), Positives = 77/126 (61%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+RVL V+ D + +I+ LL++C Y V A E L+ + DLV+++V++P +
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 102 GFALLTLV-MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
GF LL LV +E D +PVIM+S H V+K + GA D+L+KPVR EL+N+WQHV
Sbjct: 77 GFKLLELVGLEMD----LPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHV 132
Query: 161 WRRHSL 166
R+ L
Sbjct: 133 VRKSKL 138
Score = 55 (24.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 398 SFPSTSNDQGND------ERHTLNHSAASAFSWYNNSKACPTPTSNSAELKDGSSKSDEI 451
SFP ND GN E +N++ AF + + + P ++ L +G+ +S +
Sbjct: 317 SFPRNHNDGGNILQGLPLEELQINNNINRAFPSFTSQQNSPMVAPSNLLLLEGNPQSSSL 376
Query: 452 LSN 454
SN
Sbjct: 377 PSN 379
Score = 43 (20.2 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 387 FSPHLELSLRKSFPSTSNDQGNDERHTLNHSAASAFSW 424
FSPH E+S R S + N + + HS W
Sbjct: 382 FSPHFEISKRLEHWSNAALSTNIPQSDV-HSKPDTLEW 418
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 241 (89.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 52/122 (42%), Positives = 75/122 (61%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+RVL V+ D + +I+ +LLR C Y V A E L+ + DLV+++V++P +
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 102 GFALLTLV-MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
GF LL LV +E D +PVIM+S H V+K + GA D+L+KPVR EL+N+WQHV
Sbjct: 77 GFKLLELVGLEMD----LPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHV 132
Query: 161 WR 162
R
Sbjct: 133 VR 134
Score = 54 (24.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 34/123 (27%), Positives = 47/123 (38%)
Query: 470 TSSNSRENMTS--LVMGQSEQAAVAFAGPHLGFIPVPGVRFDNIFAGYSHIFPSIFYTKS 527
T++N NM S + G S A +F+ I P +N+ H P T
Sbjct: 370 TNNNKSRNMNSNKSIAGTS-MAFPSFSTQQNSLISAPN---NNVVVLEGH--PQA--TPP 421
Query: 528 GLQPAWSPNSSHQKEHHRFPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGR 587
G P N + EH +S+S H P H+S INH D + S+
Sbjct: 422 GF-PGHQINK--RLEHWSNAVSSSTHPPPPAHNSNS-------INHQ-FDVSPLPHSRPD 470
Query: 588 PLE 590
PLE
Sbjct: 471 PLE 473
Score = 45 (20.9 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 29/124 (23%), Positives = 48/124 (38%)
Query: 351 IGTFDNHQEVPDKLSTPNDGIPDKLSTLHNRTKKCEFSPHLELSLRKSFPSTSNDQGNDE 410
+G+ H P S P +GI +L+T + SP + L+ + +
Sbjct: 286 VGSGQYHGGAPAMRSFPPNGILGRLNTPSGIGVRSLSSPPAGMFLQNQ--TDIGKFHHVS 343
Query: 411 RHTLNHSAASAFSWYNNSKACPTPTSNSAELKDGSSKSDEILSNQLSENATGGFQPCCAT 470
LNHS N + P P +L+ ++KS + SN+ + F P +T
Sbjct: 344 SLPLNHSDGG-----NILQGLPMPLEFD-QLQTNNNKSRNMNSNKSIAGTSMAF-PSFST 396
Query: 471 SSNS 474
NS
Sbjct: 397 QQNS 400
Score = 38 (18.4 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 379 HNRTKKCE-FSPHLELSLRKSFPSTSNDQGNDERHT--LNHSAASAFSWYNNSKACPTPT 435
H K+ E +S + S P+ +++ N + L HS W N S + P
Sbjct: 426 HQINKRLEHWSNAVSSSTHPPPPAHNSNSINHQFDVSPLPHSRPDPLEWNNVSSSYSIPF 485
Query: 436 SNSA 439
+SA
Sbjct: 486 CDSA 489
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 235 (87.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 63/178 (35%), Positives = 91/178 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
LRVL+V+ D + I+ +L C YRV +A L+ + D+V+++V +P +
Sbjct: 28 LRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMD 87
Query: 102 GFALLTLV-MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
GF LL V +E D +PVIMMS DS S+VLK + GA D+LIKPVR L+N+WQHV
Sbjct: 88 GFKLLEHVGLEMD----LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHV 143
Query: 161 WRRHSLLGGHVPQNLHDVYHKGGAISENNMXXXXXXXXXXXXQKNKGSEKVSDAQSSR 218
R+ N+ + H GG+I + N S + +SSR
Sbjct: 144 VRKK-----RNEWNVSE--HSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSR 194
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 236 (88.1 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 54/123 (43%), Positives = 74/123 (60%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
LRVL+V+ D + I+ +LR C Y V A L+ H D+V+++V +P +
Sbjct: 37 LRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMD 96
Query: 102 GFALLTLV-MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
GF LL V +E D +PVIMMS DS S+VLK + GA D+LIKPVR L+N+WQHV
Sbjct: 97 GFKLLEHVGLEMD----LPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHV 152
Query: 161 WRR 163
R+
Sbjct: 153 VRK 155
Score = 40 (19.1 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 547 PISASVHSNPDVHDSEQVYGRTGE-INHNSVDQTVCEQSKGRPLEQLRHGSPAGNQ 601
P+S+ V + + R GE + H+ +Q + +P L HG P G Q
Sbjct: 362 PVSSIVDER-SIFSFDNTKTRFGEGLGHHG------QQPQQQPQMNLLHGVPTGLQ 410
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 453 SNQLSENATGGFQPCCATSSNSRENMT 479
S+Q SE+A ++SS SR N T
Sbjct: 577 SHQDSESAAFSASEAYSSSSMSRHNTT 603
Score = 37 (18.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 351 IG-TFDNHQEVPDKLSTPNDGIPDKLSTLHNRT 382
IG FD+HQ+ + ++ + HN T
Sbjct: 571 IGIAFDSHQDSESAAFSASEAYSSSSMSRHNTT 603
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 220 (82.5 bits), Expect = 9.8e-15, P = 9.8e-15
Identities = 52/125 (41%), Positives = 77/125 (61%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLA--AWETLKCRPHSIDLVLTEVELPS 99
LRVL+V+ D + +I+ +L+KC Y V GLA A L+ R D+V+++V +P
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTC--GLAREALRLLRERKDGYDIVISDVNMPD 68
Query: 100 ISGFALLTLV-MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158
+ GF LL V +E D +PVIMMS+ S V+K + GA D+L+KP+R EL+ +WQ
Sbjct: 69 MDGFKLLEHVGLELD----LPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQ 124
Query: 159 HVWRR 163
HV R+
Sbjct: 125 HVLRK 129
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 195 (73.7 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 46/124 (37%), Positives = 69/124 (55%)
Query: 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
+P VL V+ R +IS LLR YRV V G A E L ++ +++T+
Sbjct: 6 VPEPEPHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSL-DRNVHMIITDYC 64
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+P ++GF LL V E K IPV++MS +S + + +C+ +GA DFLIKPVR +++ L
Sbjct: 65 MPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRL 124
Query: 157 WQHV 160
V
Sbjct: 125 CNRV 128
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 209 (78.6 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 50/128 (39%), Positives = 76/128 (59%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
LR+L+V+ D S I+ +L + Y+V A L+ R S DLVL++V +P ++
Sbjct: 11 LRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMN 70
Query: 102 GFALLTLV--MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
G+ LL V +E D +PVIMMS+ + V+ + GA D+LIKP+R EL+N+WQH
Sbjct: 71 GYNLLQQVGLLEMD----LPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQH 126
Query: 160 VWRRHSLL 167
V RR ++
Sbjct: 127 VVRRKCVM 134
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 191 (72.3 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 46/143 (32%), Positives = 75/143 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
LRVL+++ D S ++ LL KC Y+V + A + P +DLV+++ P+
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 102 GFALLTLVMEHDVCK-NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G L+++ K IP ++M+ + V+K + GA DFL+KPVR EL N+WQH+
Sbjct: 71 GL----LILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 161 WRRHSLLGGHVPQNLHDVYHKGG 183
+R+ + H N+ K G
Sbjct: 127 FRKQ--MQDHKNNNMVGNLEKPG 147
Score = 58 (25.5 bits), Expect = 8.8e-14, Sum P(2) = 8.8e-14
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 386 EFSPHLE---LSLRKSFPSTSNDQGNDERHTLNHSAAS-AFSWYNNSKACPTPTSNSAEL 441
+ + HL+ + L+KS P+TS L+ + + S Y N C S
Sbjct: 241 QVASHLQKYRMQLKKSIPTTSKHGATLSSTALDKTQDHPSRSQYFNQDGCKEIMDYSLPR 300
Query: 442 KDGSSKSDEILSNQLSENATGGFQ 465
D SS S E + +L++ ++ GFQ
Sbjct: 301 DDLSSGS-ECMLEELNDYSSEGFQ 323
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 191 (72.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 46/143 (32%), Positives = 75/143 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
LRVL+++ D S ++ LL KC Y+V + A + P +DLV+++ P+
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 102 GFALLTLVMEHDVCK-NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G L+++ K IP ++M+ + V+K + GA DFL+KPVR EL N+WQH+
Sbjct: 71 GL----LILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 161 WRRHSLLGGHVPQNLHDVYHKGG 183
+R+ + H N+ K G
Sbjct: 127 FRKQ--MQDHKNNNMVGNLEKPG 147
Score = 57 (25.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 386 EFSPHLE---LSLRKSFPSTSNDQGNDERHTLNHSAAS-AFSWYNNSKACPTPTSNSAEL 441
+ + HL+ + L+KS P+TS L+ + + S Y N C S
Sbjct: 241 QVASHLQKYRMQLKKSIPTTSKHGATLSSTALDKTQDHPSRSQYFNQDGCMEIMDYSLPR 300
Query: 442 KDGSSKSDEILSNQLSENATGGFQ 465
D SS S E + +L++ ++ GFQ
Sbjct: 301 DDLSSGS-ECMLEELNDYSSEGFQ 323
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 211 (79.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 56/163 (34%), Positives = 84/163 (51%)
Query: 6 VVVSSEGGMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCG 65
+V G L + SS V + + P V R+L+ + DD R+I++ LL+K
Sbjct: 125 LVNGHNNGFGDKLNDQPSPSSHRVSDFSDEYSPSKV-RILVADDDDVQRKILNNLLKKFH 183
Query: 66 YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125
Y V VP+G AWE + DLVLT+V +P I+GF LL + +H V ++IPVI+MS
Sbjct: 184 YNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSG 243
Query: 126 HDSISMVLKCMLK-GAADFLIKPVRRNELRN----LWQHVWRR 163
+K G DFL KP+ + L+ + Q +W+R
Sbjct: 244 TAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTVLQSIWQR 286
Score = 38 (18.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 441 LKDGSSKSDEILS-NQLSENATGGFQPCCATSSNSRENMTS 480
+K K DE + +++S +++ P +TSS++ E +S
Sbjct: 753 VKSKLPKIDEEENRDKVSSSSSSSTAPLTSTSSSNNETSSS 793
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 175 (66.7 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRP--HSIDLVLTEVELPS 99
+ VL V+ R +I+ +LR YRV V A E L C ++++++T+ +P
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELL-CLGLVPNVNMIITDYWMPG 108
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
++G+ LL V E K IPV++MS + + + +C+ +GA DFL+KPVR +++ L
Sbjct: 109 MTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSR 168
Query: 160 V 160
+
Sbjct: 169 I 169
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 170 (64.9 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 9 SSEGGMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDST--RQIISALLRKCGY 66
S+E D + + ++D + E P V+ V DDS+ R +I+ALLR+ Y
Sbjct: 61 SAEDDDDDEEDDDEDDDDDDDEDDEEEAAPPYVMAV-----DDSSVDRAVITALLRRSKY 115
Query: 67 RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126
R G A E L P+ + +++T+ +P ++G+ LL + E K IPV++MS
Sbjct: 116 R----DSGKRALEILGSEPN-VSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSE 170
Query: 127 DSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+ + + +C+ +GA DFL+KPVR ++ +
Sbjct: 171 NVPTRISRCLEEGAEDFLLKPVRPADISRI 200
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 149 (57.5 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 37/131 (28%), Positives = 70/131 (53%)
Query: 46 LVEADDST--RQIISALLRKCGYRVAAVPDGLAAWETLKCRPH--------------SID 89
++ DDS R++I LL+ ++V V G A E L H +++
Sbjct: 11 VLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEVAVN 70
Query: 90 LVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
L++T+ +P ++G+ LL + E ++IPV++MS + S + +C+ +GA +F +KPVR
Sbjct: 71 LIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPVR 130
Query: 150 RNELRNLWQHV 160
+++ L H+
Sbjct: 131 LSDMSKLKPHI 141
Score = 42 (19.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 598 AGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNL 642
+ ++S+NS N + NSSS T S NS KA +P +
Sbjct: 158 SNSESNNSS--NPTSENSSSSTSS----NSHKRKAVDEEILPHTI 196
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/133 (27%), Positives = 70/133 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL---------KCRPHSIDLVL 92
L VL V+ R++I LLR +V V G A + L + ++L++
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 93 TEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
T+ +P +SG+ LL + E + +PV++MS + + + +C+ +GA +FL+KPV+ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 153 LRNLWQHVWRRHS 165
++ + Q + R +
Sbjct: 144 VKRIKQLIMRNEA 156
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 151 (58.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/130 (27%), Positives = 69/130 (53%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC---------RPHSIDLVL 92
L VL V+ R++I LL+ +V V G A + L + ++L++
Sbjct: 18 LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLIV 77
Query: 93 TEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
T+ +P ++G+ LL + E + IPV++MS + + +CM++GA +FL+KPV+ +
Sbjct: 78 TDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLAD 137
Query: 153 LRNLWQHVWR 162
++ L + + R
Sbjct: 138 VKRLKELIMR 147
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 161 (61.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 42/126 (33%), Positives = 68/126 (53%)
Query: 39 RMVLRVLLVEADDSTRQIISALLRK--CG--YRVAAVPDGLAAWETL----KCRPHSIDL 90
R V RVLLV+ R+++ LL C + V AV A E L + + +ID+
Sbjct: 5 RGVTRVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDM 64
Query: 91 VLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRR 150
VLT+ +P ++G+ LL + K IPVI+MS + + +CM GA DF++KP++
Sbjct: 65 VLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQS 124
Query: 151 NELRNL 156
+++ L
Sbjct: 125 KDVQRL 130
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 146 (56.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 41/157 (26%), Positives = 84/157 (53%)
Query: 3 MGEVVVSSEGGMDIDLETEKDGSSEVVRTRW--ESFLPRMVL-RVLLVEADDSTRQIISA 59
M EV++ + M+I + K GS + + +S + R + R+L V + T ++ +
Sbjct: 1 MAEVMLPRK--MEILNHSSKFGSPDPLHVLAVDDSHVDRKFIERLLRVSSCKVT--VVDS 56
Query: 60 LLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119
R Y V + +E LK ++L++T+ +P ++G+ LL + E + +P
Sbjct: 57 ATRALQYLGLDVEEKSVGFEDLK-----VNLIMTDYSMPGMTGYELLKKIKESSAFREVP 111
Query: 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
V++MS + + + +C+ +GA DFL+KPV+ ++++ L
Sbjct: 112 VVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDVKRL 148
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 160 (61.4 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 42/138 (30%), Positives = 74/138 (53%)
Query: 44 VLLVEADDST--RQIISALLRKCGYRVAAVPDGLAAWETL-----KCRPH----SIDLVL 92
V ++ DDS R +I LLR +V AV G A E L K +DL++
Sbjct: 34 VHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLII 93
Query: 93 TEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
T+ +P ++G+ LL + E + +PV++MS + ++ + +C+ +GA DFL+KPV+ +
Sbjct: 94 TDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLAD 153
Query: 153 LRNLWQHVWRRHSLLGGH 170
++ L H+ + L G+
Sbjct: 154 VKRLRSHLTKDVKLSNGN 171
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 144 (55.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+VE ++S ++ S LL GY VA V DG +A + + P DL++ ++ LP + G
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
F + ++ ++IPV+M++ S K + GA+ ++ KP +
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFK 109
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 143 (55.4 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 37/129 (28%), Positives = 67/129 (51%)
Query: 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHS---------- 87
P++ L VL V+ R+ I LLR +V V A + L +
Sbjct: 22 PKL-LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLK 80
Query: 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
I+L++T+ +P ++G+ LL + E + IPV++MS + + + +C+ +GA DFL+KP
Sbjct: 81 INLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKP 140
Query: 148 VRRNELRNL 156
V+ +++ L
Sbjct: 141 VKLADVKRL 149
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 155 (59.6 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 41/131 (31%), Positives = 72/131 (54%)
Query: 43 RVLLVEADDST--RQIISALLRKCGYRVAAVPDGLAAWETL-----KCRPH----SIDLV 91
+V ++ DDS R +I LLR +V AV G A E L K +DL+
Sbjct: 32 QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLI 91
Query: 92 LTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRN 151
+T+ +P ++G+ LL + E K +PV++MS + ++ + +C+ +GA DFL+KPV+
Sbjct: 92 ITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLA 151
Query: 152 ELRNLWQHVWR 162
+++ L ++ R
Sbjct: 152 DVKRLRSYLTR 162
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 156 (60.0 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 40/121 (33%), Positives = 70/121 (57%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ VL+V+ ++ R+++S +L + A +GL A L + +IDL+L ++E+P ++
Sbjct: 5 ISVLVVDDEEMNRELLSVMLDGLATPITA-QNGLEALRVLD-KNSAIDLILLDLEMPELN 62
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELR-NLWQH 159
GFA L + +H + +IPVI+++ D ++ L+ GA DFL KP ELR + H
Sbjct: 63 GFATLATLKKHPLWCDIPVIVLTASKDEVTRTLRL---GANDFLAKPYDTEELRLRVMNH 119
Query: 160 V 160
V
Sbjct: 120 V 120
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 135 (52.6 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 30/123 (24%), Positives = 74/123 (60%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+V+ +++ R ++ LL + G+ VA+V +G A L+ R +++++T++ +P ++G
Sbjct: 8 KILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQR--EVNVIVTDINMPEMNG 65
Query: 103 FALLTLVMEHDVCKNIP---VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
L ++ K+ P VIM++ + + ++ M GA +++ KPV+ +EL+++
Sbjct: 66 ITFL-----RELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTK 120
Query: 160 VWR 162
+++
Sbjct: 121 IFK 123
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 134 (52.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 30/117 (25%), Positives = 64/117 (54%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
VL+V+ R ++S L + RV AV + A L H +D+++++ +P ++G+
Sbjct: 6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFLDSE-HDVDMIVSDYCMPDMTGY 64
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
LL V + ++PV++ S + + KC+ GA D+++KPV+ ++ + +++
Sbjct: 65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 152 (58.6 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 39/122 (31%), Positives = 67/122 (54%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
LRVL+ + D S I+ L+K Y+V + A TL+ + DL + +V
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGD 101
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
F L+ + ++P+I++S DS+ V K M+ GAAD+LIKP+R +LR +++H+
Sbjct: 102 IFRFLSEIGSE---MDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 162 RR 163
++
Sbjct: 159 KK 160
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 159 (61.0 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 37/108 (34%), Positives = 59/108 (54%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M + VLLVE D S R+ + L GY AV A + +P S LV+++V +P
Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFS--LVISDVNMPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ G LL+L+ +PV++M+ H ++ + M +GAAD+L+KP
Sbjct: 59 MDGHQLLSLLRSRH--PQLPVLLMTAHGAVDRAVDAMRQGAADYLVKP 104
Score = 42 (19.8 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 601 QSSNSGLCNGLANNSSSGTYSRIDRNSSSAK----ASGTGTVPQNLNGCTLFIHD--GFN 654
+S ++ L +G + I +NS A A +P N+ TLF H+ F
Sbjct: 149 KSDSTVLISGESGTGKEVLARFIHQNSPRADKPFIAINCAAIPDNMLEATLFGHEKGSFT 208
Query: 655 GISARHSSQRDAA 667
G A + + + A
Sbjct: 209 GAIAAQAGKFEQA 221
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 159 (61.0 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 37/108 (34%), Positives = 59/108 (54%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M + VLLVE D S R+ + L GY AV A + +P S LV+++V +P
Sbjct: 1 MPINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQPFS--LVISDVNMPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ G LL+L+ +PV++M+ H ++ + M +GAAD+L+KP
Sbjct: 59 MDGHQLLSLLRSRH--PQLPVLLMTAHGAVDRAVDAMRQGAADYLVKP 104
Score = 42 (19.8 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 601 QSSNSGLCNGLANNSSSGTYSRIDRNSSSAK----ASGTGTVPQNLNGCTLFIHD--GFN 654
+S ++ L +G + I +NS A A +P N+ TLF H+ F
Sbjct: 149 KSDSTVLISGESGTGKEVLARFIHQNSPRADKPFIAINCAAIPDNMLEATLFGHEKGSFT 208
Query: 655 GISARHSSQRDAA 667
G A + + + A
Sbjct: 209 GAIAAQAGKFEQA 221
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 162 (62.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 43/130 (33%), Positives = 70/130 (53%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++VLLVE D + R+ ++ L G+ AV A E + P S LV+++V +P
Sbjct: 1 MAIKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEPFS--LVVSDVNMPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
+ G LL L+ +PV++M+ H ++ ++ M +GAAD+L+KP L +L
Sbjct: 59 MDGHQLLGLLRARQ--PQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDLVA- 115
Query: 160 VWRRHSLLGG 169
RH+L GG
Sbjct: 116 ---RHAL-GG 121
Score = 38 (18.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 632 ASGTGTVPQNLNGCTLFIHD--GFNGISARHSSQRDAA 667
A +P N+ TLF H+ F G A + + A
Sbjct: 184 AINCAAIPDNMLEATLFGHEKGSFTGAIAAQPGKFEQA 221
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 36/129 (27%), Positives = 66/129 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCR-PHSID---------LV 91
L VL V+ + R+++ +L+ +V +GL A E L P D L+
Sbjct: 20 LHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLI 79
Query: 92 LTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRN 151
+T+ +P ++GF LL V E K +PV+++S + + + KC+ GA F+ KP++ +
Sbjct: 80 ITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLS 139
Query: 152 ELRNLWQHV 160
++ L H+
Sbjct: 140 DVEKLKCHL 148
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 37/111 (33%), Positives = 61/111 (54%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LLVE D S +S L + G+ V V G + +K ++ D+VL +V LP ++G
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIK--KNTTDIVLLDVMLPGLNGI 61
Query: 104 ALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNEL 153
+ L+ +H+ K +P+IM++ D V+ + GA D++IKPVR L
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIG-LEAGADDYVIKPVRPRAL 111
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 154 (59.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+VE + + +I LL K GY V +GL A E L+ + H DLVL ++ +P + G
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE-KNHVFDLVLMDISMPIMDGI 514
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
A ++ + + IP+I ++ H + S C+ G D ++KP+R ++
Sbjct: 515 AATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 154 (59.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+VE + + +I LL K GY V +GL A E L+ + H DLVL ++ +P + G
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE-KNHVFDLVLMDISMPIMDGI 514
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
A ++ + + IP+I ++ H + S C+ G D ++KP+R ++
Sbjct: 515 AATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 152 (58.6 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 41/153 (26%), Positives = 75/153 (49%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+V+ +++ R ++ A+LRK GY DG AA + D +L ++ +P
Sbjct: 1 MKKRILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAALAQASAAAY--DFILCDIRMPI 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
+ G L + ++ VIMMS + ++ + CM +GA D++ KP + +E+ + +
Sbjct: 59 MDGVGFLRTFQKAELPGT--VIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEILLVLRK 116
Query: 160 VWRRHSLLGGHVPQNLHDV----YHKGGAISEN 188
R L + + L +V Y G +S N
Sbjct: 117 AEERERLKNEN--RRLREVVGREYAFGSIVSRN 147
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 127 (49.8 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
++L++T+ +P ++G+ LL V K+IPV++MS + + + +C+ GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKP 133
Query: 148 VRRNELRNLWQHVWRRHSLL 167
V+ +++ L H+ +R L
Sbjct: 134 VKLADMKKLKSHLLKRKQQL 153
Score = 58 (25.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 43 RVLLVEADDST--RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSID 89
R ++ DDS R++I LL+ Y+V V G A E L R D
Sbjct: 9 RFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDD 57
>UNIPROTKB|Q9KQ67 [details] [associations]
symbol:VC_2135 "Sigma-54 dependent response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+VE D+ R+ + L GY A LK + HS+D+V+++V++ + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEAD--CAEDALLKLKSHSVDIVVSDVQMAGMGG 64
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
ALL + +H N+PV++M+ + +I + M GA D++ KP L N+
Sbjct: 65 LALLRSIKQH--WPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>TIGR_CMR|VC_2135 [details] [associations]
symbol:VC_2135 "flagellar regulatory protein C" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0030092 "regulation of
flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 151 (58.2 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 35/114 (30%), Positives = 61/114 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+VE D+ R+ + L GY A LK + HS+D+V+++V++ + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEAD--CAEDALLKLKSHSVDIVVSDVQMAGMGG 64
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
ALL + +H N+PV++M+ + +I + M GA D++ KP L N+
Sbjct: 65 LALLRSIKQH--WPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/123 (24%), Positives = 63/123 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+++L+V+ + R+II LLR G+ + DGL A L+ + D ++T+ +P +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSG--AFDFLVTDWNMPGM 58
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
+G LL V + K++PV+M++ +++ G +++KP L+ + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 161 WRR 163
+ R
Sbjct: 119 FER 121
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/123 (25%), Positives = 61/123 (49%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+++L+V+ + R+II LLR G+ DG A L SID ++T+ +P +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLNSG--SIDFLVTDWNMPGM 58
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
+G LL V + K++PV+M++ +++ G +++KP L+ + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 161 WRR 163
+ R
Sbjct: 119 FER 121
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+V+ S R ++S LR GY V DG A K I+L++++V +P++ G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALS--KLNGDKINLIISDVNMPNMDG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ L V +H K PVIM++ + + + GA +++KP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/107 (28%), Positives = 59/107 (55%)
Query: 44 VLLVEADDSTRQIIS-ALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
VL+VE + RQ+I+ AL R G + DG+ + L H+IDL+LT++ +P + G
Sbjct: 6 VLIVEDSPTMRQLIAFALKRIPGISIVEASDGVDGLKKLSA--HAIDLILTDINMPVMDG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
L++LV +++P+ +++ + + + GA ++ KP++
Sbjct: 64 LKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQ 110
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 128 (50.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/105 (29%), Positives = 55/105 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+V+ S R ++S LR GY V DG A K I+L++++V +P++ G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALS--KLNGDKINLIISDVNMPNMDG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ L V +H K PVIM++ + + + GA +++KP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 32/116 (27%), Positives = 62/116 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLAAWETLKCRPHS-IDLVLTEVELPSI 100
R+L+ E + R ++ A ++ G+ V G +E L+ P +DL++T++ +P I
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSG---FEALRLLPRERLDLIITDINMPDI 59
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+G L++ V D ++IP+ ++S S K + GA ++L+KP L++L
Sbjct: 60 NGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/123 (24%), Positives = 59/123 (47%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+++L+V+ + R+I+ LLR G+ DGL A LK D V+T+ +P +
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G LL + + K++PV+M++ +++ G +++KP L+ +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 161 WRR 163
+ R
Sbjct: 127 FER 129
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 32/116 (27%), Positives = 62/116 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLAAWETLKCRPHS-IDLVLTEVELPSI 100
R+L+ E + R ++ A ++ G+ V G +E L+ P +DL++T++ +P I
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSG---FEALRLLPRERLDLIITDINMPDI 59
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+G L++ V D ++IP+ ++S S K + GA ++L+KP L++L
Sbjct: 60 NGLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 127 (49.8 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/123 (24%), Positives = 59/123 (47%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+++L+V+ + R+I+ LLR G+ DGL A LK D V+T+ +P +
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G LL + + K++PV+M++ +++ G +++KP L+ +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 161 WRR 163
+ R
Sbjct: 127 FER 129
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 143 (55.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 34/110 (30%), Positives = 59/110 (53%)
Query: 47 VEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALL 106
V A DS ++ + L R+ G R P AA +ID+VLT+ +P ++G+ LL
Sbjct: 45 VTAVDSGKKAMELLGRRRGDRDHLTPSSPAA--AAAANDQAIDIVLTDYCMPEMTGYDLL 102
Query: 107 TLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+ IPV++MS + + +C+ GA DF++KP++ N+++ L
Sbjct: 103 KAIKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKPLKMNDVQRL 152
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 126 (49.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL V+ S RQ++S L+ GY V DG A K + D+++++V +P ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
F + V K P++M++ S + GA +L+KP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 126 (49.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL V+ S RQ++S L+ GY V DG A K + D+++++V +P ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
F + V K P++M++ S + GA +L+KP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>UNIPROTKB|Q9KM66 [details] [associations]
symbol:cqsS "CAI-1 autoinducer sensor kinase/phosphatase
CqsS" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 151 (58.2 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 40/116 (34%), Positives = 61/116 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLK-CRPHSIDLVLTEVELPSIS 101
R+L+V+ + S R + LL + GY V DG E LK +IDLVL ++E+P++
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGS---EVLKHMESQNIDLVLMDIEMPNVG 625
Query: 102 GFALLTLVM--EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G L+ EH+ KNIP+I + +S + G DF++KP R+ L N
Sbjct: 626 GLEATRLIRNSEHEY-KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>TIGR_CMR|VC_A0522 [details] [associations]
symbol:VC_A0522 "sensor histidine kinase/response
regulator LuxN" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 151 (58.2 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 40/116 (34%), Positives = 61/116 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLK-CRPHSIDLVLTEVELPSIS 101
R+L+V+ + S R + LL + GY V DG E LK +IDLVL ++E+P++
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGS---EVLKHMESQNIDLVLMDIEMPNVG 625
Query: 102 GFALLTLVM--EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G L+ EH+ KNIP+I + +S + G DF++KP R+ L N
Sbjct: 626 GLEATRLIRNSEHEY-KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 151 (58.2 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+ L+E DD RQ L+ G+ VA DG +A ++ S V+++V LP G
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIE--QQSFAAVVSDVRLPDTDG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
+LL + +V +PVI+++ H + M +K + +GA DF+ KP + L N
Sbjct: 63 LSLLVALK--NVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLAN 113
Score = 44 (20.5 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 624 DRNSSSAKASGTGTVPQNLNGCTLFIHDG--FNGISARHSSQRDAA 667
+R A G +P+NL LF H+ F G R + + A
Sbjct: 191 ERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELA 236
Score = 37 (18.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 329 ITYGIHGCNDELI 341
I YG GC EL+
Sbjct: 170 IIYGETGCGKELV 182
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 151 (58.2 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 37/113 (32%), Positives = 60/113 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+ L+E DD RQ L+ G+ VA DG +A ++ S V+++V LP G
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIE--QQSFAAVVSDVRLPDTDG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
+LL + +V +PVI+++ H + M +K + +GA DF+ KP + L N
Sbjct: 63 LSLLVALK--NVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLAN 113
Score = 44 (20.5 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 624 DRNSSSAKASGTGTVPQNLNGCTLFIHDG--FNGISARHSSQRDAA 667
+R A G +P+NL LF H+ F G R + + A
Sbjct: 191 ERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELA 236
Score = 37 (18.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 329 ITYGIHGCNDELI 341
I YG GC EL+
Sbjct: 170 IIYGETGCGKELV 182
>DICTYBASE|DDB_G0268640 [details] [associations]
symbol:DDB_G0268640 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0268640 EMBL:AAFI02000004 eggNOG:NOG12793
RefSeq:XP_646824.1 EnsemblProtists:DDB0233766 GeneID:8616507
KEGG:ddi:DDB_G0268640 InParanoid:Q55F46 OMA:HSTSEVS Uniprot:Q55F46
Length = 784
Score = 151 (58.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 110/445 (24%), Positives = 169/445 (37%)
Query: 205 NKGSEKVSDAQSSRTSSPYLEAESAY---MQNMQGLSQLKCRSASNTCSTDMERQNECAK 261
N SE SD+ S + P + SA + S++ S+ ++ + N ++
Sbjct: 248 NSASEVPSDSSHSASEVPSGSSHSASEVPTGSSHSASEVPTGSSHSSSEVPSDSSNSASE 307
Query: 262 LETESLMPESK--TGGASDELIVSEKLNRSGSEVAQCDDALRLEEDYGCVKTMPQGEGEG 319
+ T S S+ TG + VS + S SEV+ E G + + G
Sbjct: 308 VPTGSSHSNSEVPTGSSHSASEVSTGSSHSASEVSTSSSLSASEVSAGSSHSASEVSA-G 366
Query: 320 PKNDRINADITYGIHGCNDELIEPSS-GAIDL-IGTFDNHQEVPDKLSTPNDGIPDKLST 377
N +++ G E+ SS A ++ IG+ + EV S +P+ S
Sbjct: 367 SSNSA--SEVPTGSSHSKSEVPNGSSHSASEVPIGSSHSASEVSTSSSHSASEVPNGSS- 423
Query: 378 LHNRTKKCEFSPHLELSLRKSFPSTSNDQGNDERHTLNHSAASAFSWYNN--SKACPTPT 435
H+R++ S S S STS+ E T + ++AS S ++ + T +
Sbjct: 424 -HSRSEVSTSS-----SNSGSEVSTSSSHSGSEVSTSSSNSASEVSTGSSRSTSEVSTSS 477
Query: 436 SNSA-ELKDGSSKS-DEIL---SNQLSENATGGFQPCCATSSNSRENMTSLVMGQSEQAA 490
SNSA E+ GSS S E+L SN SE TG ++S + + + G S A+
Sbjct: 478 SNSASEVLSGSSNSASEVLTGSSNSASEVPTGSSNSASEVPTDSSNSASEVPTGSSNSAS 537
Query: 491 VAFAGPHLGFIPVPGVRFDNIFAGYSHIFPSIFYTKSGLQPAWSPNSSHQKEHHRFPISA 550
G VP N + S+ + S S SSH S
Sbjct: 538 EVPTGSSNSVTEVP-TGSSN--SASSNSVSEVPTGSSNSVTEVSTTSSHSA-------SG 587
Query: 551 SVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNG 610
S HS +V G G N + E S G L GS + N S S NG
Sbjct: 588 SSHSTSEVSTGSSQSGSEGSTGSNGSSHSGSEGSIGSG--SLNSGSVSHNSDSGSEDSNG 645
Query: 611 LANNSSSGTYSRIDRNSSSAKASGT 635
+S SG S + SS + + G+
Sbjct: 646 ---SSQSG--SEVSNGSSQSVSEGS 665
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 125 (49.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 45 LLVEADDST-RQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
LLV D ST R+II L + GY V G+ AWE L + +++T+ +P ++G
Sbjct: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEMNG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
L+ V K IP+IM++ + V+ + G ++++KP
Sbjct: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 106
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 125 (49.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 29/114 (25%), Positives = 57/114 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++ V+ S RQ++S L++ GY V DG A K +D+V+T++ +P+
Sbjct: 1 MAKTIMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDA--LAKLAGTRVDMVITDLNMPN 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ G L+ V + + P++M++ S + GA +++KP + +L
Sbjct: 59 LDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 125 (49.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 29/114 (25%), Positives = 57/114 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++ V+ S RQ++S L++ GY V DG A K +D+V+T++ +P+
Sbjct: 1 MAKTIMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDA--LAKLAGTRVDMVITDLNMPN 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ G L+ V + + P++M++ S + GA +++KP + +L
Sbjct: 59 LDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 140 (54.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 35/113 (30%), Positives = 62/113 (54%)
Query: 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
V+RVLLVE D+ I A L++ G+ + V DG AA + L + D+++ ++ LP
Sbjct: 9 VMRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKR 68
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
SG +L + E + PV++++ D++ +K + G+ D++ KP EL
Sbjct: 69 SGLDVLKTIREKN--DPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEEL 119
>TIGR_CMR|GSU_0879 [details] [associations]
symbol:GSU_0879 "chemotaxis protein CheV" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
RefSeq:NP_951936.1 ProteinModelPortal:Q74ET0 DNASU:2687281
GeneID:2687281 KEGG:gsu:GSU0879 PATRIC:22024521
HOGENOM:HOG000255028 ProtClustDB:CLSK828077
BioCyc:GSUL243231:GH27-857-MONOMER Uniprot:Q74ET0
Length = 312
Score = 144 (55.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 48/131 (36%), Positives = 65/131 (49%)
Query: 34 ESFLPRMVL----RVLLVEADDST--RQIISALLRKCGYRVAAVPDGLAAWETL-----K 82
E LP VL R +LV ADDS R I + LR GY V +G AW + +
Sbjct: 169 EQLLPGPVLDRSQRRILV-ADDSAFIRNSICSSLRGAGYNVDEAENGEDAWNMIQDKLTR 227
Query: 83 CRPHSI------DLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCM 136
CR + DL++T+VE+P + G L TLV + DV K++PV++ S S K
Sbjct: 228 CRAAGVNLRSELDLLITDVEMPKMDGLHLTTLVKKDDVLKDLPVLIFSSLASDDNKRKWK 287
Query: 137 LKGAADFLIKP 147
GA D + KP
Sbjct: 288 DLGALDIVTKP 298
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 147 (56.8 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 38/129 (29%), Positives = 72/129 (55%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++LL++ +++ R+ ++ LL+ G+ V + G A++TL R + D+V+T++ LP SG
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLT-RD-TFDIVITDLFLPDASG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+L V E VI+++ H S +K M +GA D++ KP+ +EL+ +
Sbjct: 64 IDILKKVKEDAPLTE--VILITGHASAETAVKAMKEGAFDYITKPLNFDELKIIIGKAVE 121
Query: 163 RHSLLGGHV 171
+ LL +V
Sbjct: 122 KRQLLSENV 130
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 147 (56.8 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 41/145 (28%), Positives = 72/145 (49%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+V +V+ + I+ L GYR DG+ A + L+ R S DLVL ++ +P + G
Sbjct: 5 KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALE-R-ESFDLVLLDIRMPRMDG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV-- 160
+L + D ++ VIMM+ H S + ++ M KGA D++ KP ++++ +
Sbjct: 63 IEVLERI--RDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQ 120
Query: 161 WRRHSLLGGHVPQNLHDVYHKGGAI 185
+ R L + + L + K GAI
Sbjct: 121 FNRTRLENERLQRVLDEERRKMGAI 145
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 147 (56.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 79/316 (25%), Positives = 127/316 (40%)
Query: 31 TRWESFLPRMVLRVLLVEADDSTRQIISAL-----LRKCGYRVAAVPDGLAAWETLKCRP 85
++WE+F P+ + +LL+ DS SA L Y V D A + P
Sbjct: 9 SKWENF-PKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNP 67
Query: 86 HSIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144
S + + EV + + S F L DV +P IM+S I+ +KC+ GA +FL
Sbjct: 68 ESFHIAIVEVNMSAESESFKFLEAAK--DV---LPTIMISTDHCITTTMKCIALGAVEFL 122
Query: 145 IKPVRRNELRNLWQHVWRRHSLLGG-HVPQNLHDVYHKGGAIS----ENNMXXXXXXXXX 199
KP+ +L+N+WQHV + GG +V +L V K +S E +M
Sbjct: 123 QKPLSPEKLKNIWQHVVHKAFNDGGSNVSISLKPV--KESVVSMLHLETDMTIEEKDPAP 180
Query: 200 XXXQKNKGSEKVS-DAQSSRTSSPYLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNE 258
Q + S + D Q + S S NM+ + + +T + ++
Sbjct: 181 STPQLKQDSRLLDGDCQENINFSMENVNSSTEKDNMEDHQDIGESKSVDTTNRKLDDDKV 240
Query: 259 CAKLETESLMPESKTGGASDELIVSEKLNRSGSEVAQCDDALRLEEDYGCVKTMPQGEGE 318
K E E + G + +LI SEK + + D+ + + G +K +
Sbjct: 241 VVKEERGD--SEKEEEGETGDLI-SEKTDSVDIHKKE-DETKPINKSSG-IKNV-----S 290
Query: 319 GPKNDRINADITYGIH 334
G K R D T +H
Sbjct: 291 GNKTSRKKVDWTPELH 306
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 41/124 (33%), Positives = 66/124 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+V+ D S I+ ALLR GY VA G A E + R DLVL +V + + G
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV--REQVFDLVLCDVRMAEMDGI 65
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR-NLWQHVWR 162
A L + + IPV++M+ + S+ ++ + GA D+LIKP+ + L+ L + +
Sbjct: 66 ATLKEIKALNPA--IPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123
Query: 163 RHSL 166
HS+
Sbjct: 124 THSI 127
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/113 (32%), Positives = 57/113 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++LLVE D S R+ + L Y V G A LK H DLV+++V++P I G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK--QHQFDLVISDVQMPGIGG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
LL + +H +PV++M+ + +I + + GA D+L KP L N
Sbjct: 63 LGLLNYLQQHH--PKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/113 (32%), Positives = 57/113 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++LLVE D S R+ + L Y V G A LK H DLV+++V++P I G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK--QHQFDLVISDVQMPGIGG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
LL + +H +PV++M+ + +I + + GA D+L KP L N
Sbjct: 63 LGLLNYLQQHH--PKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|BA_3261 [details] [associations]
symbol:BA_3261 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845560.1 RefSeq:YP_019897.1 RefSeq:YP_029285.1
ProteinModelPortal:Q81NE3 DNASU:1089115
EnsemblBacteria:EBBACT00000011389 EnsemblBacteria:EBBACT00000014025
EnsemblBacteria:EBBACT00000020758 GeneID:1089115 GeneID:2818827
GeneID:2853015 KEGG:ban:BA_3261 KEGG:bar:GBAA_3261 KEGG:bat:BAS3028
OMA:FELCKKM ProtClustDB:CLSK916983
BioCyc:BANT260799:GJAJ-3090-MONOMER
BioCyc:BANT261594:GJ7F-3193-MONOMER Uniprot:Q81NE3
Length = 225
Score = 137 (53.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/132 (25%), Positives = 68/132 (51%)
Query: 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
++ +LL + D R+++ L+K G++V DG A E L+ +I L + ++ +P +
Sbjct: 3 MIHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLE--KENIHLAIVDIMMPFV 60
Query: 101 SGFALLTLVME-HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
G+ L + + HD IPVI+++ D + K + G D+++KP E+ +
Sbjct: 61 DGYTLCEEIRKYHD----IPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKA 116
Query: 160 VWRRHSLLGGHV 171
+ RR+ +L +
Sbjct: 117 LLRRYQMLSADI 128
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 122 (48.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
L+V++++ + R+ LL+ G V DG A K + ++ ++ +P +
Sbjct: 8 LKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDA--LAKIADNHPRIIFVDIMMPRLD 65
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G+ L+ + K+ PVIM+S D + K + G+ FL KP + EL
Sbjct: 66 GYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEEL 117
>TAIR|locus:2164718 [details] [associations]
symbol:BBX8 "B-box domain protein 8" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005886 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB023039 EMBL:AY039957 EMBL:AY142607
IPI:IPI00527282 RefSeq:NP_199636.1 UniGene:At.7080
ProteinModelPortal:Q9LUA9 IntAct:Q9LUA9 STRING:Q9LUA9
EnsemblPlants:AT5G48250.1 GeneID:834878 KEGG:ath:AT5G48250
TAIR:At5g48250 eggNOG:NOG248444 HOGENOM:HOG000116529
InParanoid:Q9LUA9 OMA:ESACEQG PhylomeDB:Q9LUA9
ProtClustDB:CLSN2684850 Genevestigator:Q9LUA9 GermOnline:AT5G48250
Uniprot:Q9LUA9
Length = 373
Score = 120 (47.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 23/50 (46%), Positives = 38/50 (76%)
Query: 656 ISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
I++ H++ R+ A+ +++ K+K R +DK+VRY SRK A+ R RVKG+FV+
Sbjct: 308 IASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVK 357
Score = 68 (29.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 536 NSSHQKEHHRFPISASVHSN-PDVHDSEQVYGRTGEINHNSVDQTVCEQSKG-RPLEQLR 593
NS+ H R I+ +S P + ++ ++N +S +++ CEQ G +++
Sbjct: 80 NSTTTSHHKRQTINC--YSGCPSSAELSSIWSFCMDLNISSAEESACEQGMGLMTIDEDG 137
Query: 594 HGSPAGNQSSNSGLCNGLANNSSSGT-YSRIDRNSSSAKASGTGTVPQNLNG 644
G +G Q N + ++++ G +S + NSS AK G + NG
Sbjct: 138 TGEKSGVQKIN--VEQPETSSAAQGMDHSSVPENSSMAKE--LGVCEDDFNG 185
Score = 41 (19.5 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 426 NNSKACPTPTSNSAELKDGSSK---SDEILSNQLSENATGGFQPCCATSSN--SRE 476
NN+ A T + + SSK S+ S E+ G FQ C A+S SRE
Sbjct: 240 NNASADSFMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSRE 295
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++L+V+ + RQ++ A L+ Y+V DG A + C D +LT+ +P
Sbjct: 1 MSKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDL--CSSQRFDFILTDQNMPR 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ G L+ + P+IM++ M + GA +++KP
Sbjct: 59 MDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKP 106
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++L+V+ + RQ++ A L+ Y+V DG A + C D +LT+ +P
Sbjct: 1 MSKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDL--CSSQRFDFILTDQNMPR 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ G L+ + P+IM++ M + GA +++KP
Sbjct: 59 MDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKP 106
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/123 (24%), Positives = 57/123 (46%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+++L+V+ + R+II LLR G+ DG A L+ D V+T+ +P +
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G LL + D K++PV+M++ ++ G +++KP L+ +
Sbjct: 63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKI 122
Query: 161 WRR 163
+ R
Sbjct: 123 FER 125
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 38/103 (36%), Positives = 57/103 (55%)
Query: 616 SSGTY-SRIDRNSSSAKASGTGTVPQ-NLNGCT--LFIHDGFNGISARHSSQ-RDAALTK 670
S+ TY S+ +S S + G VP N N I G + SS R+A + +
Sbjct: 232 SAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTGGDHQASSMDREARVLR 291
Query: 671 FRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKD 713
+R KRK+R ++K +RY SRK+ AE RPR+KG+F ++ + E D
Sbjct: 292 YREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETENDD 334
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 141 (54.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 36/126 (28%), Positives = 64/126 (50%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
++VL+V+ +++ R ++ L + GY V G A + LK + L + ++++P I
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLK--EETFHLAIFDIKMPGID 62
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
G LL + D +N+ VI+++ H +I + M GA D+L KP EL Q +
Sbjct: 63 GIELLQRARQLD--ENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAY 120
Query: 162 RRHSLL 167
+ LL
Sbjct: 121 EKRQLL 126
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 118 (46.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLK-CRPHSIDLVLTEVEL 97
M RVL+V+ R +I +L K GY V +G A E K +P D+V ++ +
Sbjct: 1 MSARVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP---DVVTMDITM 57
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLW 157
P + G + + + D N +IM S ++V++ + GA DF++KP +++ + +
Sbjct: 58 PEMDGIQAVREIKKID--PNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAF 115
Query: 158 QHVWRR 163
+ +R
Sbjct: 116 EKTLKR 121
>TIGR_CMR|GSU_1038 [details] [associations]
symbol:GSU_1038 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_952091.1 ProteinModelPortal:Q74EC5 GeneID:2688721
KEGG:gsu:GSU1038 PATRIC:22024844 OMA:ECALENA
BioCyc:GSUL243231:GH27-1025-MONOMER Uniprot:Q74EC5
Length = 513
Score = 141 (54.7 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LLV+ D TR+++ L GYRVA DG A E R S DLVL ++ +P + G+
Sbjct: 23 ILLVDDDAVTRKMLRNLFTLSGYRVADAEDGARAVEMF--RELSPDLVLLDIMMPVMDGY 80
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
+ +++P+I+M+ D + + + GA DF+ KPV
Sbjct: 81 GACAAIRGLPGGEHVPIIIMTALDDANSIGRAFDAGATDFIEKPV 125
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 133 (51.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 33/113 (29%), Positives = 61/113 (53%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+++L+V+ + ++I L + GY+V DG+ A E +K DLV+ ++ LP +S
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVK--KELPDLVILDIMLPGMS 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNEL 153
G + + ++ IP+IM+S + + +L L GA D+++KP EL
Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLEL-GADDYMVKPFSPREL 110
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 133 (51.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 40/131 (30%), Positives = 72/131 (54%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGY------RVAAVPDGLAAWETLKCRPHSIDLVLTEV 95
+++L++E D T +I+ L K G+ ++ GLA ET K P D ++ ++
Sbjct: 1 MKILIIEDDAQTTEIVK-LSFKLGWPDVRLLEASSGESGLAMVETAK--P---DAIILDI 54
Query: 96 ELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
LP ISG+ +L + + +PVI++++ + S ++K + GA D+L+KP R+ EL
Sbjct: 55 GLPDISGYEVLRQIR---LFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMELLA 111
Query: 156 LWQHVWRR-HS 165
+ + RR HS
Sbjct: 112 RIKAISRRLHS 122
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 137 (53.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 34/107 (31%), Positives = 60/107 (56%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
++VL+V+ +R I++ L GY V +V G A + P D+++T++ LP +S
Sbjct: 7 IQVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEVNAAP--FDILVTDINLPGMS 64
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
G LL L+ D ++ V++++ + S +K + GA DF+IKPV
Sbjct: 65 GLNLLKLLK--DSFPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPV 109
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 116 (45.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M+ +V++V+ + R ALL + G + +G+ A E P +DL L ++ +P
Sbjct: 1 MMKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPK 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
+ GF L+ + IP +M+S S + + GA +++KPV EL+
Sbjct: 59 MDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 116 (45.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 33/108 (30%), Positives = 54/108 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +VLLV+ R+I+S L+K GY V +G A E L + DL++ ++ +P
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLDIMMPV 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ GF +L + E + K IPVI+++ + GA + KP
Sbjct: 59 MDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 116 (45.9 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M+ +V++V+ + R ALL + G + +G+ A E P +DL L ++ +P
Sbjct: 1 MMKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPK 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
+ GF L+ + IP +M+S S + + GA +++KPV EL+
Sbjct: 59 MDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 132 (51.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
++L++T+ +P ++G+ LL V E ++IPV++MS + + + +C+ +GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKP 133
Query: 148 VRRNELRNLWQHVWR 162
VR +L L H+ +
Sbjct: 134 VRLADLNKLKPHMMK 148
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 131 (51.2 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 35/112 (31%), Positives = 57/112 (50%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+++L+V+ + S R +I L GY V DG E P D+++ +V LP
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEGP---DVLILDVMLPDTD 57
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G+ LL L E D ++IPV+M++ ++ L + GA D++ KP EL
Sbjct: 58 GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAEL 107
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 141 (54.7 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 33/113 (29%), Positives = 64/113 (56%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+VE D RQ+ LL++ GY V V G + L+ + + LV+T++ +P +SG
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLEKQEYH--LVITDLVMPGMSG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
+L+ V + N+ VI+++ H ++ + + GA D+++KP +E ++
Sbjct: 61 IEVLSRVKQK--APNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKH 111
Score = 42 (19.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 29/126 (23%), Positives = 53/126 (42%)
Query: 582 EQSKGRPLEQLRHGSP---AGNQSSNSGLCNGLANNSSSGTYSRIDRNSSS---AKASGT 635
E+S+ L++LR P A LC+ A ++G + R+D + S + +G
Sbjct: 174 EKSEPHALKELRGLEPEVAAALAEKALTLCSDAAE--TAGGFRRLDGSHFSDGLLRTAGI 231
Query: 636 G-----TVPQN--LNGCTLFIHDGFNGISA--RHSSQRDAALTKFRLKRKDRCYDKKVRY 686
++ Q L G L ++D A +H S +F L++ +D +RY
Sbjct: 232 NGALVVSIRQRTLLQGVLLLVNDQGKPFPAVFKHKS------IQFLLEQASLAFDNALRY 285
Query: 687 QSRKSL 692
S + +
Sbjct: 286 SSARDM 291
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 138 (53.6 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+V+ + R + L+K GY V + +G A + R DLVL +++LP ISG
Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIV--REEQPDLVLLDIQLPGISG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
L + E+D + I VIM++ H ++ + M GA D++ KP +E+
Sbjct: 63 LEALEKIKEYD--EEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM 111
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 141 (54.7 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 49/165 (29%), Positives = 78/165 (47%)
Query: 4 GEVVVSSEGGMD------IDLETEKDG-SSEVVRTRW---ESFLPRMVLRVLLVEADDST 53
G + V+SE GM + L D +S T W E + L VLLV+ +
Sbjct: 498 GVISVASEPGMGSTFSFRVRLRGAPDDIASPPPATGWAVAEKSVAVRPLSVLLVDDSAVS 557
Query: 54 RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113
R+++S LL G+RV DG+ A + R + DLVL +V++P + GF + + +
Sbjct: 558 RKVVSLLLESDGHRVTFAGDGVEALAAIG-R-EAFDLVLMDVQMPVMDGFEAMRAIRAGE 615
Query: 114 VC--KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+P+I ++ C+ GA D+L KPV +ELR +
Sbjct: 616 AAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRV 660
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 131 (51.2 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 35/113 (30%), Positives = 66/113 (58%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLK-CRPHSIDLVLTEVELPSIS 101
R+L+V+ D S ++++ +LR G+ A + DG A ++ RP DLVL ++ LP ++
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP---DLVLLDLMLPGMN 63
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNEL 153
G + V+ D +P++M++ D++ +VL + GA D+++KP + EL
Sbjct: 64 GIDVCR-VLRAD--SGVPIVMLTAKTDTVDVVLG-LESGADDYIMKPFKPKEL 112
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 138 (53.6 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 31/104 (29%), Positives = 61/104 (58%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+++++ D + +SALL GY V G A L C ID+V+T++ +P ++G
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVHRLSCG--GIDIVITDINMPEMTGI 66
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+L + + + ++PVI+M+ + +S+ ++ + +GA DF+IKP
Sbjct: 67 EVLRAIRKSN--PDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
Score = 42 (19.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 507 RFDNIFAGYSH 517
RFD IF G SH
Sbjct: 347 RFDEIFEGESH 357
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 115 (45.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 32/114 (28%), Positives = 61/114 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 62 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 115 (45.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 30/118 (25%), Positives = 60/118 (50%)
Query: 45 LLVEADDST-RQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
LLV D ST R+II L + G+ V G+ AW+ L + + +++T+ +P ++G
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLT-KNEDVKVLITDWNMPEMNG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
L+ V +++P+IM++ + V+ + G ++++KP L+ + V
Sbjct: 62 LELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 137 (53.3 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 39/152 (25%), Positives = 78/152 (51%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPH-SIDLVLTEVELP 98
M + VL+V+ + S R+ ++ LL + GY V +A E L C + DLV+++V++P
Sbjct: 1 MEIHVLVVDDELSMREFLAILLDREGY---TVDQAASAEEALACLERKTYDLVISDVKMP 57
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158
+ G LL + E + + V++M+ + ++ M GA D++ KP + E++ L +
Sbjct: 58 GLDGITLLGRIKE--MTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILAR 115
Query: 159 HVWRRHSLLGGHVP--QNLHDVYHKGGAISEN 188
+ + L ++ Q + + Y G I ++
Sbjct: 116 NALEKRDLKRENLRLRQEVQERYSFSGLIGKS 147
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 130 (50.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 38/125 (30%), Positives = 63/125 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+LL++ D +++ LL G+++ DG E + DL+L +V LP ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALATDY--DLILLDVMLPKLNG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
F +L + +H K PV+M++ D I V+ + GA D+L KP EL + +
Sbjct: 61 FEVLRALRQH---KQTPVLMLTARGDEIDRVVGLEI-GADDYLPKPFNDRELIARIRAII 116
Query: 162 RRHSL 166
RR L
Sbjct: 117 RRSHL 121
>UNIPROTKB|Q52879 [details] [associations]
symbol:cheY1 "CheY1" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06657 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61833 ProteinModelPortal:Q52879
IntAct:Q52879 PATRIC:23630491 ProtClustDB:CLSK881447 Uniprot:Q52879
Length = 121
Score = 114 (45.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 24/108 (22%), Positives = 52/108 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M RVL V+ + R ++ L G+ DG+ E L + D+++T++ +P
Sbjct: 1 MKKRVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLDTA--NPDVIVTDINMPR 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ GF + V ++D + +P+++++ + GA +++KP
Sbjct: 59 LDGFGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKP 106
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 130 (50.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/50 (44%), Positives = 38/50 (76%)
Query: 663 QRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETK 712
+R+A + ++R K+K R +DK +RY SRK+ AE RPR+KG+F ++++ E +
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAE 326
Score = 48 (22.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 289 SGSEVAQCD-DALRLEEDYGCVKTMPQGEGEGPKNDRINADITYGIHGCNDELIEPSSGA 347
S S +A + DA E+D + G+ N N +G+ +L++ SS +
Sbjct: 108 SCSSMAPSETDADNDEDDREVASWLLPNPGKNIGNQ--NNGFLFGVEYL--DLVDYSS-S 162
Query: 348 IDLIGTFDNHQEVPDKLSTPNDGI-PDKL--STLHNRTKKCEFSPHLELSLRKSFPSTSN 404
+D F+++Q + S DG+ P ++ ST H + + F +L + F S ++
Sbjct: 163 MD--NQFEDNQYTHYQRSFGGDGVVPLQVEESTSHLQQSQQNF----QLGINYGFSSGAH 216
Query: 405 DQGNDERHTLNHSAA 419
N+ LNHSA+
Sbjct: 217 -YNNNSLKDLNHSAS 230
>TIGR_CMR|GSU_0811 [details] [associations]
symbol:GSU_0811 "nitrogen regulation protein NtrX"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0019740 "nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 KO:K13599 RefSeq:NP_951868.1
ProteinModelPortal:Q74EZ8 GeneID:2685237 KEGG:gsu:GSU0811
PATRIC:22024383 OMA:DIWMPRL BioCyc:GSUL243231:GH27-761-MONOMER
Uniprot:Q74EZ8
Length = 456
Score = 142 (55.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSISG 102
+L+V+ + R ++ +L GYR A DG+ A ET+ K RP DLVL ++ +P + G
Sbjct: 5 ILVVDDEQDIRTALAGILEDEGYRTAFARDGVEALETVQKDRP---DLVLLDIWMPRLDG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
L + D + V+MMS H +I +K GA DF+ KP+
Sbjct: 62 METLQRLKTAD--PGLTVVMMSGHGTIETAVKSTKMGAFDFIEKPL 105
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 260 AKLETESLMPESKTGGASDELIVSEKLNRSGSEVAQCDDALRLE 303
A LE SL E++ E I+ +KL G +++ DA+ LE
Sbjct: 399 AALEPSSLR-EAREE-FEREFII-QKLEEYGWNISRTADAIELE 439
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/114 (28%), Positives = 60/114 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+VE D R+ + L Y G AA LK + H +D+V+++V++ +SG
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ-H-VDIVISDVQMGGMSG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+LL + H N+PV++M+ +I ++ M GA +++ KP L N+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/114 (28%), Positives = 60/114 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+VE D R+ + L Y G AA LK + H +D+V+++V++ +SG
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ-H-VDIVISDVQMGGMSG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+LL + H N+PV++M+ +I ++ M GA +++ KP L N+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 42/148 (28%), Positives = 72/148 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +L+V+ + R+I+ +L Y G A L R D++LT++++
Sbjct: 1 MPATILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDER--EFDVILTDLKMQG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
+SG LL ++ D + I IMM+ H ++ ++ M KGA D+L KP+ R+ L +
Sbjct: 59 MSGMELLERLLAADPQQCI--IMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRR 116
Query: 160 VWRRHSLLGGHVPQNLHDVYHKGGAISE 187
R LL + + LH + GAI +
Sbjct: 117 AVERVRLLKEN--RALHKKLEETGAIPD 142
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/108 (26%), Positives = 51/108 (47%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M VL+V+ S RQ++ L+ GY V DG A K + L++++V +P+
Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALG--KLTGQKVHLIISDVNMPN 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ G + V + K P+IM++ S + GA +++KP
Sbjct: 59 MDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKP 106
>UNIPROTKB|Q9KLK7 [details] [associations]
symbol:luxQ "Autoinducer 2 sensor kinase/phosphatase LuxQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0023014 "signal transduction by phosphorylation" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 InterPro:IPR015387
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 Pfam:PF09308 PRINTS:PR00344
ProDom:PD142495 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0004721 GO:GO:0016311 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 PIR:C82424
RefSeq:NP_233123.1 PDB:3C30 PDB:3C38 PDBsum:3C30 PDBsum:3C38
ProteinModelPortal:Q9KLK7 DNASU:2611934 GeneID:2611934
KEGG:vch:VCA0736 PATRIC:20086018 KO:K10909 OMA:LMSQERQ
ProtClustDB:CLSK869745 EvolutionaryTrace:Q9KLK7 Uniprot:Q9KLK7
Length = 857
Score = 139 (54.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/174 (28%), Positives = 79/174 (45%)
Query: 1 MKMGEVVVSSEGG--------MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDS 52
M G++ VSSE G + I+L + D +++ L LRVLLVE + +
Sbjct: 681 MLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAPQQLLPAPDPQPLFDKTLRVLLVEDNHT 740
Query: 53 TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112
I A RK G V+ V DGL A E LK H DLVL + +LP + G + +
Sbjct: 741 NAFIAQAFCRKYGLDVSWVTDGLQAIEELKI--HDYDLVLMDNQLPYLDGVETTRTIKK- 797
Query: 113 DVCKNIPVIMMSLH-DSISMVLKCMLKGAADF-LIKPVRRNELRNLWQHVWRRH 164
++PV++ + D + + A++ L+KP++ L +H H
Sbjct: 798 --VLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKALEHFKHHH 849
>TIGR_CMR|VC_A0736 [details] [associations]
symbol:VC_A0736 "sensor histidine kinase LuxQ" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR015387 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09308 PRINTS:PR00344 ProDom:PD142495
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0004721
GO:GO:0016311 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 PIR:C82424
RefSeq:NP_233123.1 PDB:3C30 PDB:3C38 PDBsum:3C30 PDBsum:3C38
ProteinModelPortal:Q9KLK7 DNASU:2611934 GeneID:2611934
KEGG:vch:VCA0736 PATRIC:20086018 KO:K10909 OMA:LMSQERQ
ProtClustDB:CLSK869745 EvolutionaryTrace:Q9KLK7 Uniprot:Q9KLK7
Length = 857
Score = 139 (54.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/174 (28%), Positives = 79/174 (45%)
Query: 1 MKMGEVVVSSEGG--------MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDS 52
M G++ VSSE G + I+L + D +++ L LRVLLVE + +
Sbjct: 681 MLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAPQQLLPAPDPQPLFDKTLRVLLVEDNHT 740
Query: 53 TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112
I A RK G V+ V DGL A E LK H DLVL + +LP + G + +
Sbjct: 741 NAFIAQAFCRKYGLDVSWVTDGLQAIEELKI--HDYDLVLMDNQLPYLDGVETTRTIKK- 797
Query: 113 DVCKNIPVIMMSLH-DSISMVLKCMLKGAADF-LIKPVRRNELRNLWQHVWRRH 164
++PV++ + D + + A++ L+KP++ L +H H
Sbjct: 798 --VLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKALEHFKHHH 849
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/108 (21%), Positives = 52/108 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +VL V+ + R ++ L G+ DG+ E L+ + D+++T++ +P
Sbjct: 1 MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLE--QSNPDVIVTDINMPR 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ GF + V ++ + IP+++++ + GA +++KP
Sbjct: 59 LDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/108 (21%), Positives = 52/108 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +VL V+ + R ++ L G+ DG+ E L+ + D+++T++ +P
Sbjct: 1 MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLE--QSNPDVIVTDINMPR 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ GF + V ++ + IP+++++ + GA +++KP
Sbjct: 59 LDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 121 (47.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 21/51 (41%), Positives = 38/51 (74%)
Query: 656 ISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
I + + +R+A++ +++ KR+ R + KK+RYQ RK A++RPR KG+FV++
Sbjct: 143 IEEKRNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
Score = 41 (19.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 356 NHQEVPDKLSTPNDGIPDKLSTLHNRTKKCEFSPHLE 392
NHQEV D S + STL N + E P +E
Sbjct: 109 NHQEVIDAWSDHQKPLWTDTSTLDNSVYRGEV-PVIE 144
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 662 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKDANADG 718
++R+A + ++R KRK+R ++K +RY SRK+ AE RPR+KG+F ++ + D G
Sbjct: 227 AEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSRENDGGDVG 283
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
++VL+V+ + RQ + + + V +GL A E K DL+ +V +P +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALE--KVLNGEFDLMTVDVNMPKMD 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
G+ + V E V ++PVI++S LK + GA +L+KPV
Sbjct: 59 GYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
++VL+V+ + RQ + + + V +GL A E K DL+ +V +P +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALE--KVLNGEFDLMTVDVNMPKMD 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
G+ + V E V ++PVI++S LK + GA +L+KPV
Sbjct: 59 GYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
I+L++T+ +P ++G+ LL V E ++IPV++MS + + + +C+ +GA +F +KP
Sbjct: 72 INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKP 131
Query: 148 VRRNELRNLWQHVWR 162
V+ +L L H+ +
Sbjct: 132 VKLADLTKLKPHMMK 146
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+VE D + R+++ L K GY++ DGL A R LV+ +V LP + G
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMY--RRFKPSLVILDVMLPGMDG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
F L L+ ++P++M++ S + + + GA D+L KP EL + + R
Sbjct: 63 FELCRLIRAES---SVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLR 119
Query: 163 RHSL 166
R +
Sbjct: 120 RSQM 123
>TIGR_CMR|GSU_0470 [details] [associations]
symbol:GSU_0470 "sigma-54 dependent response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
Length = 453
Score = 133 (51.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+ E D + R + +L+ GY + DG A L R S DLVL+++ +P
Sbjct: 1 MTTRILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALL--RRESFDLVLSDLRMPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
I G LL + D ++++ +I + + +GAADFL KP++
Sbjct: 59 IGGLELLRASRDDDYPPAF--VILTAFGTIEEAVAAVKEGAADFLTKPLK 106
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 110 (43.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
++VL+V+ ++R ++ L++ G++ + A DG + + PH LV+++ +P +
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL V + K I+++ ++V K GA + L KP
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKP 111
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 110 (43.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/112 (25%), Positives = 59/112 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+V+ R ++ + +K GY+ +G A + +K + DLV+ ++++P + G
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMDG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
+L V E D ++I VI+M+ + + M+ + GA KP +E+R
Sbjct: 62 IEILKHVKEID--ESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TIGR_CMR|DET_0130 [details] [associations]
symbol:DET_0130 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034820
RefSeq:YP_180880.1 ProteinModelPortal:Q3ZA69 STRING:Q3ZA69
GeneID:3230504 KEGG:det:DET0130 PATRIC:21607349 OMA:QIVQAKN
ProtClustDB:CLSK837608 BioCyc:DETH243164:GJNF-130-MONOMER
Uniprot:Q3ZA69
Length = 123
Score = 110 (43.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
+P+M ++L+ + ++ RQ++ +L K Y++ +G A + + R DL+L ++
Sbjct: 1 MPKM--KILIADDEEHVRQLVCGILDK-DYQIVQAKNGEEAVK--ESREQDFDLILMDIM 55
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMS-LHDSISMVLKCMLKGAADFLIKPVRRNELR 154
+P + G A ++ IP++M++ + ++ L L GA ++ KP ELR
Sbjct: 56 MPKLDGLAACCMLKGDKQTSAIPIVMLTGVGYELNKKLSQQL-GADGYITKPFSPRELR 113
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 130 (50.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/48 (50%), Positives = 39/48 (81%)
Query: 659 RHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
R S+R+A + ++R KRK+R ++KK+RY+ RK A++RPR+KG+FVR+
Sbjct: 273 RVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 34/123 (27%), Positives = 63/123 (51%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LLV+ ++ R+++ L K G+ V DG A + H IDL++ ++ LP I G
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFS--EHKIDLIILDLMLPEIDGM 61
Query: 104 ALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+ + + + +P+IM++ + I +L + GA D+++KP E+ + V R
Sbjct: 62 EIAKEIRKTSL---VPIIMLTARGEEIDKILGLEI-GADDYVVKPFSPREVVARVKAVLR 117
Query: 163 RHS 165
R S
Sbjct: 118 RSS 120
>UNIPROTKB|G3LTY8 [details] [associations]
symbol:phoB "Two-component regulator protein" species:636
"Edwardsiella tarda" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817 TIGRFAMs:TIGR02154
EMBL:JN543949 Uniprot:G3LTY8
Length = 229
Score = 126 (49.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 37/126 (29%), Positives = 61/126 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +R+L+VE + R ++S +L + GY+ A L C P+ DL+L + LP
Sbjct: 1 MTIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQL-CEPYP-DLILLDWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG L+ + + IPV+M++ ++ + GA D++ KP EL +
Sbjct: 59 GSGIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKA 118
Query: 160 VWRRHS 165
V RR S
Sbjct: 119 VMRRIS 124
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +VL+VE ++ ++ LL GY +GL+A R + DL+L +++LP
Sbjct: 1 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI--ARENKPDLILMDIQLPE 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMS 124
ISG + + E D +IPV+ ++
Sbjct: 59 ISGLEVTKWLKEDDDLAHIPVVAVT 83
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/114 (23%), Positives = 59/114 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
++VL+V+ ++R ++S L + G++ + + DG + ++ +PH LV+++ +P +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
G L V + K I+++ ++V K GA + L KP +++R
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/114 (23%), Positives = 59/114 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
++VL+V+ ++R ++S L + G++ + + DG + ++ +PH LV+++ +P +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
G L V + K I+++ ++V K GA + L KP +++R
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|GSU_1102 [details] [associations]
symbol:GSU_1102 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 KO:K07657 RefSeq:NP_952155.1
ProteinModelPortal:Q74E62 GeneID:2688572 KEGG:gsu:GSU1102
PATRIC:22024966 OMA:EARRCKP ProtClustDB:CLSK828177
BioCyc:GSUL243231:GH27-1089-MONOMER Uniprot:Q74E62
Length = 225
Score = 125 (49.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 34/121 (28%), Positives = 62/121 (51%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L++E + +++ L K GYR DG E + +P DL+L ++ LP + G
Sbjct: 4 ILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPP--DLILLDLMLPGMMGM 61
Query: 104 ALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+ ++ + + +IPVIM++ + I V+ + GA D+++KP EL + V R
Sbjct: 62 EVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEV-GADDYVVKPFSTRELLLRVKAVLR 120
Query: 163 R 163
R
Sbjct: 121 R 121
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 126 (49.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 35/127 (27%), Positives = 66/127 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGL-AAWETLKCRPHSIDLVLTEVELPSI 100
+++LL+E + T++ ++ L + GY + AV DG + LK L++ ++ LP +
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK---DDYALIILDIMLPGM 57
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G+ +L + K PVI ++ DS+ ++ + GA D+L+KP +EL +
Sbjct: 58 DGWQILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114
Query: 161 WRRHSLL 167
R+H L
Sbjct: 115 LRQHHAL 121
Score = 37 (18.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 501 IPVPGVRFDNIFAGYSHIFPSIFYTKSGLQPAW 533
+ + G+R D++ S SI T+ Q W
Sbjct: 125 LEISGLRMDSVSHSVSRDNISITLTRKEFQLLW 157
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 131 (51.2 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 24/51 (47%), Positives = 37/51 (72%)
Query: 661 SSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNET 711
S R+A++ +++ KR+ R + KK+RYQ RK A+QRPR+KG+FVR+ T
Sbjct: 380 SGMREASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRPNEST 430
>TIGR_CMR|CPS_4695 [details] [associations]
symbol:CPS_4695 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR012827 InterPro:IPR016131 Pfam:PF00072 PROSITE:PS00550
PROSITE:PS50110 SMART:SM00448 Pfam:PF01814 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2197 InterPro:IPR012312
Gene3D:1.20.120.50 SUPFAM:SSF47188 TIGRFAMs:TIGR02481
RefSeq:YP_271339.1 ProteinModelPortal:Q47V33 STRING:Q47V33
GeneID:3520526 KEGG:cps:CPS_4695 PATRIC:21472209 OMA:FDNYFVY
ProtClustDB:CLSK938206 BioCyc:CPSY167879:GI48-4701-MONOMER
Uniprot:Q47V33
Length = 519
Score = 132 (51.5 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 40/143 (27%), Positives = 71/143 (49%)
Query: 13 GMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVP 72
G++ DL T +D ++T R ++L+ E+ D ++I + + A V
Sbjct: 235 GVNTDLLTTEDAEKACLKTS------RY--KILIAESSDLFTKVIEEIFADTVFIYALVN 286
Query: 73 DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMV 132
DG AA E K R D+VL +LP I+G + L+ E +PVI + H S++
Sbjct: 287 DGQAALE--KIRTFKPDVVLLAYDLPIINGLEVTRLIREEG--NKVPVIAYAHHKDKSVI 342
Query: 133 LKCMLKGAADFLIKPVRRNELRN 155
+ + G + +LIKP++++ + N
Sbjct: 343 KRWIPFGLSGYLIKPLKKSAILN 365
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 131 (51.2 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 31/113 (27%), Positives = 60/113 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
VL+V+ + + +++SA+L G+ V D A LK R +D ++T++ +P G
Sbjct: 5 VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILKSR--DVDAIITDLRMPGRDGM 62
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
L V EH +IPVI ++ + ++ + + +GA + IKP +L+++
Sbjct: 63 QLFEHVTEH--LPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSM 113
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 42 LRVLLVEADDS--TRQIISALLRKCGYRVAAVPDGLAAWETLK-CRPHSIDLVLTEVELP 98
+R LV DDS R++ S ++R G+ V DG E LK CR D +L + +P
Sbjct: 1 MRTCLV-VDDSRVVRKVASRIVRDLGFSVTEAGDGA---EALKMCRESMPDAILLDWNMP 56
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158
+++G L + + K ++ S+ + + + + GA +F++KP + L + +
Sbjct: 57 TMNGIDFLRALRREEGGKVPRIVFCSIENDPEHINEALRSGADEFIMKPFDADILESKFA 116
Query: 159 HV 160
V
Sbjct: 117 EV 118
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 28/113 (24%), Positives = 58/113 (51%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPSI 100
VL+V+ + R+IIS LR+ G V + DG+ L + S+DL+L+++ +P++
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGK--SVDLILSDINMPNM 61
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G + + P++M++ ++ + + GA+D + KP ++L
Sbjct: 62 DGLEFIKQARANG--HKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 131 (51.2 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 33/111 (29%), Positives = 62/111 (55%)
Query: 40 MVL-RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
M+L R+L+ + ++S R ++S LRK G+ V DG A ++ + DL + ++++P
Sbjct: 1 MLLNRILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQSNEY--DLAILDIKMP 58
Query: 99 SISGFALLTLVME--HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+G LL V E HD+ +++M+ S+ ++ M +GA D++ KP
Sbjct: 59 GFTGLELLDKVRELKHDLL----MVIMTAEASMKNAVEAMKRGAYDYITKP 105
>TIGR_CMR|GSU_2314 [details] [associations]
symbol:GSU_2314 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
PROSITE:PS50894 SMART:SM00073 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845
HSSP:P06143 RefSeq:NP_953363.2 GeneID:2687347 KEGG:gsu:GSU2314
PATRIC:22027483 HOGENOM:HOG000144277 ProtClustDB:CLSK2306793
BioCyc:GSUL243231:GH27-2320-MONOMER Uniprot:Q74AN8
Length = 1025
Score = 135 (52.6 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+R+LLVE + + RQ+ ++++ G R A +G A + L P+ DLVL +V++P +
Sbjct: 768 VRILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATTPY--DLVLMDVQMPVMD 825
Query: 102 GFALLTLVME--HDVCKN-IPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
GF + + V + IPVI ++ H KC+ G D+L KP+
Sbjct: 826 GFEATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPI 875
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 124 (48.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 33/111 (29%), Positives = 59/111 (53%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+VE ++ +++ L GY G A E K + DL+L +V LP+ISG
Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAME--KFGNGNWDLILLDVMLPNISG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+L + + IP+I+++ DS+ + + +GA+D++ KP + EL
Sbjct: 62 LEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEEL 110
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 124 (48.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 34/123 (27%), Positives = 65/123 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+++L+ E D RQ ++ +L + GY V +G A LK + D ++ ++ +P +
Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVA--LLKYQQEQPDFIILDIMMPELD 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G+++ + +HD + PVI +S + + VL L GA D++ KP +E+R + +
Sbjct: 59 GYSVCKEIRKHD--EQTPVIFLSAKGEELDKVLGLEL-GADDYINKPFGIHEVRARIKTI 115
Query: 161 WRR 163
RR
Sbjct: 116 ARR 118
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 124 (48.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 37/124 (29%), Positives = 62/124 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + R+++ +L + GY+ D +A L P DLVL + LP
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFP-DLVLLDWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG L+ + ++ +NIPV+M++ ++ + GA D++ KP EL +
Sbjct: 59 GSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKA 118
Query: 160 VWRR 163
V RR
Sbjct: 119 VIRR 122
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 124 (48.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 37/124 (29%), Positives = 62/124 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + R+++ +L + GY+ D +A L P DLVL + LP
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFP-DLVLLDWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG L+ + ++ +NIPV+M++ ++ + GA D++ KP EL +
Sbjct: 59 GSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKA 118
Query: 160 VWRR 163
V RR
Sbjct: 119 VIRR 122
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 130 (50.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 33/106 (31%), Positives = 63/106 (59%)
Query: 42 LRVLLVEADDSTRQIIS-ALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+R+L +E + + +++ +LLRK GY+V V DG A L+ S DL+L + ++P
Sbjct: 7 IRILYMEDNPALARLLQKSLLRK-GYQVDVVADGAAGLTVLEGT--SYDLILADYDMPVC 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146
G ++ + V +IPVIM++ + S + ++ + +GAAD+++K
Sbjct: 64 GGIEVIATLAARGV--DIPVIMVTGNGSEKVAVEALKQGAADYVVK 107
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 122 (48.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 41 VLRVLLVEADDSTRQIISALLR--KCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
+++VLLV+ R+ + L C V +G A E +K D+VL ++ +P
Sbjct: 1 MIKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSL--DFDIVLMDINMP 58
Query: 99 SISGFALLTLVMEHDV-CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ G +L L+ E D+ CK V+M+S+HD+ +L M GA +++K V EL
Sbjct: 59 EMDGMYVLELIKEQDLDCK---VLMLSMHDNKEYILGAMRHGADGYILKDVPGAEL 111
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 107 (42.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/123 (22%), Positives = 56/123 (45%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
++VL+V+ + R+I+ LLR G+ + DG A L+ D V+T+ +P +
Sbjct: 5 MKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQ--GGDFDFVVTDWNMPGM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G LL + +IPV++++ ++ G +++KP L+ +
Sbjct: 63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLDKI 122
Query: 161 WRR 163
+ R
Sbjct: 123 FER 125
>SGD|S000001249 [details] [associations]
symbol:SKN7 "Nuclear response regulator and transcription
factor" species:4932 "Saccharomyces cerevisiae" [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IDA;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA;IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IMP;IDA;IPI] [GO:0008361 "regulation of cell
size" evidence=IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000304 "response to singlet oxygen"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=TAS] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 SGD:S000001249 GO:GO:0005634 EMBL:BK006934
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0008361 GO:GO:0006970 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000304
GO:GO:0043619 EMBL:U00029 RefSeq:NP_012078.3 GeneID:856615
KEGG:sce:YHR208W KO:K00826 GeneTree:ENSGT00610000087034
RefSeq:NP_012076.3 GeneID:856613 KEGG:sce:YHR206W KO:K15859
OMA:QHGMNDI OrthoDB:EOG4TMV98 EMBL:U00485 EMBL:X83031 EMBL:AY723828
PIR:A49344 ProteinModelPortal:P38889 SMR:P38889 DIP:DIP-2403N
IntAct:P38889 STRING:P38889 PaxDb:P38889 PeptideAtlas:P38889
EnsemblFungi:YHR206W CYGD:YHR206w HOGENOM:HOG000248776
NextBio:982535 Genevestigator:P38889 GermOnline:YHR206W
Uniprot:P38889
Length = 622
Score = 141 (54.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 39/118 (33%), Positives = 61/118 (51%)
Query: 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
R VLLVE D + Q+ S LRK G V V DGL+A TL+ + DLVL ++ +P
Sbjct: 374 RKGFHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLE--KYRYDLVLMDIVMP 431
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
++ G ++V D P+I M+ + ++ + G D L KP R++L ++
Sbjct: 432 NLDGATATSIVRSFD--NETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSI 487
Score = 37 (18.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 609 NGLANNSSSGTYSRIDRNSSSAKASGTGTVPQ 640
N +AN S ++ ++ S G+ PQ
Sbjct: 579 NAIANARSDVAIPNLEHEINTVPHSSMGSTPQ 610
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 124 (48.7 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 38/113 (33%), Positives = 58/113 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+R+LLVE D + + L + G+ V + G A L H D+V+ ++ LP I
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSH--DMVILDLGLPDID 58
Query: 102 GFALLTLVMEHDVCKN-IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G L ++ E KN +PVI+++ DSI +K + GA D+L KP EL
Sbjct: 59 G---LLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQEL 108
>TIGR_CMR|DET_1058 [details] [associations]
symbol:DET_1058 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
Length = 227
Score = 123 (48.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 30/114 (26%), Positives = 61/114 (53%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++L+ + ++ +I+ A L + G++V+ +G A K R + DL++ ++ LP
Sbjct: 1 MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEA--LAKFREENPDLIILDLMLPE 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
ISG+ + + + +P+IM++ D ++ L + GA D++ KP EL
Sbjct: 59 ISGWDVCREIRKES---RVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKEL 109
>DICTYBASE|DDB_G0274101 [details] [associations]
symbol:dokA "histidine kinase DokA" species:44689
"Dictyostelium discoideum" [GO:0006928 "cellular component
movement" evidence=IGI] [GO:0016021 "integral to membrane"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=IEA;ISS;IDA] [GO:0030435 "sporulation resulting in
formation of a cellular spore" evidence=IMP] [GO:0023014 "signal
transduction by phosphorylation" evidence=IEA;ISS] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IMP]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IEA;ISS] [GO:0009927 "histidine
phosphotransfer kinase activity" evidence=ISS] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS00086 PROSITE:PS50110 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
dictyBase:DDB_G0274101 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0030435
EMBL:AAFI02000012 GO:GO:0005622 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0009927
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 HSSP:Q9WZV7
EMBL:X96869 PIR:S71628 RefSeq:XP_644179.1 ProteinModelPortal:Q869S5
EnsemblProtists:DDB0185194 GeneID:8619608 KEGG:ddi:DDB_G0274101
OMA:FANERLT GO:GO:0007234 Uniprot:Q869S5
Length = 1671
Score = 136 (52.9 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 49/185 (26%), Positives = 85/185 (45%)
Query: 6 VVVSSEGGMDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCG 65
++VS+ GG+D G + V T + +L+ E +D +++ L K G
Sbjct: 1490 ILVSNNGGVD--------GGNNVPSTLTTIQQSQPKKYILVAEDNDINIKVVVRQLEKLG 1541
Query: 66 YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC-KNIPVIMMS 124
Y +GL A E + P I L+L + ++P + GF T++ + + + IP+I M+
Sbjct: 1542 YTAIVGINGLKALEIIGSFP--ICLILLDCQMPQMDGFTCSTILRQIEPTGQRIPIIAMT 1599
Query: 125 LHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQNLHDVYHKGGA 184
+DS +C G D+L KPVR + L+ W + G P N ++ Y +
Sbjct: 1600 ANDSKD---RCFEVGMDDYLSKPVRVDRLQKTLSD-WIKTDENGN--PTNSYNFYPLSYS 1653
Query: 185 ISENN 189
+ NN
Sbjct: 1654 LVYNN 1658
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 123 (48.4 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 35/124 (28%), Positives = 64/124 (51%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + + R++++ ++ + G+ +A D +A LK P+ DL+L + P
Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLK-EPYP-DLILLDWMFPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG L + + + + IP+IM++ +K + GA D++ KP EL +
Sbjct: 59 GSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKA 118
Query: 160 VWRR 163
V RR
Sbjct: 119 VLRR 122
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 33/132 (25%), Positives = 67/132 (50%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+++ D ++++ LR GY + DG A + + + +DL++ ++ +P +G
Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMIST--YEVDLMILDIMMPKRNGL 62
Query: 104 ALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+ V E++ +P++M+S + + +L M GA D++IKP EL + + R
Sbjct: 63 EVCQEVRENNT---VPILMLSAKAEDMDKILGLMT-GADDYMIKPFNPLELVARVKALLR 118
Query: 163 RHSLLGGHVPQN 174
R S P+N
Sbjct: 119 RSSFQNASSPKN 130
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 106 (42.4 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 35/123 (28%), Positives = 58/123 (47%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLK-CRPHSIDLVLTEVEL 97
M RV++V+ R ++ +L GY V A DG A T + RP D+V ++ +
Sbjct: 1 MAKRVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRP---DVVTLDIIM 57
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLW 157
P +G L +M D V++ S S+V K GA DF++KP ++++
Sbjct: 58 PVKNGIEALREIMAID--PKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVM 115
Query: 158 QHV 160
+ V
Sbjct: 116 KQV 118
>TIGR_CMR|SPO_1023 [details] [associations]
symbol:SPO_1023 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:YP_166275.1 ProteinModelPortal:Q5LUN0 GeneID:3195651
KEGG:sil:SPO1023 PATRIC:23375339 OMA:AGVSRFM ProtClustDB:CLSK933415
Uniprot:Q5LUN0
Length = 126
Score = 106 (42.4 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELP 98
M RVLL+E + + + I LL + G++V DG A + + P DLV+ +V LP
Sbjct: 1 MSRRVLLIEDEPNIAEAIRFLLSRDGWQVETHADGADAVDIITTALP---DLVILDVMLP 57
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
SG +L + E +++PV+M++ G + F+ KP E+
Sbjct: 58 GKSGMDILRELREQAATQDLPVLMLTARGQSRDRDMAEKAGVSRFMTKPFSNTEV 112
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 127 (49.8 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LLV+ D R++ L+K GY+V +GL K R H DL+L ++ +P ++G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLR--KLRDHEPDLILCDLSMPVLNGI 84
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
+ V ++P++++S + ++ V K + G DFL KP+
Sbjct: 85 EFVEEVSSS--YPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 127 (49.8 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LLV+ D R++ L+K GY+V +GL K R H DL+L ++ +P ++G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLR--KLRDHEPDLILCDLSMPVLNGI 84
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
+ V ++P++++S + ++ V K + G DFL KP+
Sbjct: 85 EFVEEVSSS--YPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 46/143 (32%), Positives = 70/143 (48%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
VL+VE ++S ++ LLRK G+ V DG AA R + D+VL ++ LP +SG
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGA-DIVLLDLMLPGMSGT 61
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+ + ++PVIM++ DS I V+ L GA D++ KP EL + V R
Sbjct: 62 DVCKQLRARS---SVPVIMVTARDSEIDKVVGLEL-GADDYVTKPYSARELIARIRAVLR 117
Query: 163 RHSLLGGHVPQNLHDVYHKGGAI 185
R GG + D + G +
Sbjct: 118 R----GGDDDSEMSDGVLESGPV 136
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 34/112 (30%), Positives = 60/112 (53%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWET-LKCRPHSIDLVLTEVELPSISG 102
+LLVE D S ++++ L K G++V DG +T LK S DL++ ++ +P + G
Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLK---GSFDLIILDIMMPKLDG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNEL 153
++ ++ E +P++MMS D+ + + L GA D++ KP EL
Sbjct: 62 LEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGL-GADDYICKPFSMIEL 109
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 128 (50.1 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 38/126 (30%), Positives = 60/126 (47%)
Query: 46 LVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFAL 105
+VE S + + L + V G A E++ R DL+L ++ LP ++G +
Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58
Query: 106 LTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165
L V E ++P++ M+ H SI ++ M GA DFLIKP + LR + R+ S
Sbjct: 59 LYAVKEKS--PDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKAS 116
Query: 166 LLGGHV 171
L V
Sbjct: 117 KLKNDV 122
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 128 (50.1 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 38/126 (30%), Positives = 60/126 (47%)
Query: 46 LVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFAL 105
+VE S + + L + V G A E++ R DL+L ++ LP ++G +
Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP--DLILLDLRLPDMTGMDV 58
Query: 106 LTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165
L V E ++P++ M+ H SI ++ M GA DFLIKP + LR + R+ S
Sbjct: 59 LYAVKEKS--PDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKAS 116
Query: 166 LLGGHV 171
L V
Sbjct: 117 KLKNDV 122
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 128 (50.1 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 34/125 (27%), Positives = 63/125 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L V+ D+ + ++ LL G+ G A L+ R H +DL+++++ + ++G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALLE-REH-VDLLISDLIMEGMNG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
LL V E N+PVI+++ S+ ++ M +GA D+L KP LR Q
Sbjct: 63 LELLDRVRER--YPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRALD 120
Query: 163 RHSLL 167
H ++
Sbjct: 121 YHHVV 125
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 105 (42.0 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 34/116 (29%), Positives = 57/116 (49%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLK-CRPHSIDLVLTEVEL 97
M RVL+V+ R +I + G+ V +GL A E K +P DL ++ +
Sbjct: 1 MAKRVLVVDDAIFMRNMIKDIFASGGFEVVGEAANGLEAVEKYKELKP---DLTTMDIVM 57
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
P SG +++ D + VIM S S+V++ + GA+DF++KP R ++
Sbjct: 58 PFKSGIEATREIIKAD--SSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDV 111
>UNIPROTKB|Q1D948 [details] [associations]
symbol:MXAN_2606 "Sensor histidine kinase/response
regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0023014
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 RefSeq:YP_630825.1
ProteinModelPortal:Q1D948 IntAct:Q1D948 STRING:Q1D948
GeneID:4101819 KEGG:mxa:MXAN_2606 PATRIC:22647741 OMA:EMEIEIY
ProtClustDB:CLSK955309 BioCyc:MXAN246197:GIWU-2583-MONOMER
Uniprot:Q1D948
Length = 970
Score = 132 (51.5 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 36/112 (32%), Positives = 62/112 (55%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWE-TLKCRPHSIDLVLTEVELPSIS 101
R+++VE D R ++ LL + YRV +G + L+ RP DL+L++V +P +S
Sbjct: 599 RIMVVEDDPEIRSFLARLLAQ-HYRVMEAINGDDGRQRALRERP---DLILSDVMMPVMS 654
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +LT + +IPVI+++ ++ ++ + GA D+L KP NEL
Sbjct: 655 GLQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNEL 706
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 126 (49.4 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 53/201 (26%), Positives = 94/201 (46%)
Query: 532 AWS-PNSSHQKEHHR-FPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKGR-- 587
+W PNS ++ F I + D S++ + T + N +D V ++S G
Sbjct: 141 SWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQF--TDQSNQYQLDCNVPQRSYGEDG 198
Query: 588 --PLE-QLRHGSPAGNQSSNSGL-CNGL-ANNSSSGTYSRIDRNSS--------SAKASG 634
PL+ ++ G Q+ + C A SS+G+ S + SS S +
Sbjct: 199 VVPLQIEVSKGMYQEQQNFQLSINCGSWGALRSSNGSLSHMVNVSSMDLGVVPESTTSDA 258
Query: 635 TGTVPQNLNGCTLFIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAE 694
T + P++ T + R+A + ++R K+K R ++K +RY SRK+ AE
Sbjct: 259 TVSNPRSPKAVT--DQPPYPPAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAE 316
Query: 695 QRPRVKGQFVRQVKNETKDAN 715
+RPR+KG+F ++ K+ ++AN
Sbjct: 317 KRPRIKGRFAKK-KDVDEEAN 336
>TIGR_CMR|CPS_1826 [details] [associations]
symbol:CPS_1826 "sensor protein TorS" species:167879
"Colwellia psychrerythraea 34H" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
InterPro:IPR014302 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PIRSF:PIRSF036437 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885
PROSITE:PS50894 SMART:SM00073 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07647 OMA:PNQGRSR TIGRFAMs:TIGR02956 RefSeq:YP_268556.1
ProteinModelPortal:Q484F9 STRING:Q484F9 GeneID:3521440
KEGG:cps:CPS_1826 PATRIC:21466801 ProtClustDB:CLSK869735
BioCyc:CPSY167879:GI48-1896-MONOMER Uniprot:Q484F9
Length = 1000
Score = 132 (51.5 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 42/137 (30%), Positives = 66/137 (48%)
Query: 25 SSEVVRTRWESFLPRMVL----RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWET 80
S+E + + FLP L +VL+VE ++ + AL+ K G++V A DG +A
Sbjct: 698 SAEAISAQQVLFLPPQALSQYYQVLIVEDNEINLDVACALVEKLGHKVTAAKDGASA--- 754
Query: 81 LKCRPHS-IDLVLTEVELPSISGFALLTLVMEHDVCKNIP--VIMMSLHDSISMVLKCML 137
LKC ++ DL L ++ LP I G L + K P I +S H + K +
Sbjct: 755 LKCMHNNRFDLALLDINLPDIDGVTLSQQLKVIAKEKQTPFKTIAVSAHVFNEDIAKFIK 814
Query: 138 KGAADFLIKPVRRNELR 154
G F+ KPV+ +L+
Sbjct: 815 SGFDGFVAKPVQMKKLK 831
>TIGR_CMR|CPS_3065 [details] [associations]
symbol:CPS_3065 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_269763.1 ProteinModelPortal:Q47ZK7 STRING:Q47ZK7
GeneID:3520016 KEGG:cps:CPS_3065 PATRIC:21469133
ProtClustDB:CLSK938167 BioCyc:CPSY167879:GI48-3114-MONOMER
Uniprot:Q47ZK7
Length = 237
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 39/136 (28%), Positives = 66/136 (48%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ +L++E D ++ L+ GY + DG A +K S DL+L ++ LP +
Sbjct: 13 MHILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIK--KLSPDLILLDLMLPGVD 70
Query: 102 GFALLTLVMEHDVCKNIPVIMMS-LHDSISMVLKCMLK-GAADFLIKPVRRNELRNLWQH 159
GF L E N P+I+++ + D +S V +LK GA D+L KP + + + +
Sbjct: 71 GFELCKQAREF---YNGPIIVLTAMEDDLSEV--SLLKLGADDYLRKPAKPHIMSARIEA 125
Query: 160 VWRRHSLLGGHVPQNL 175
+ RR + V Q L
Sbjct: 126 LLRRAKVNNEKVTQEL 141
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
VLLVE + R+I+S R G+ V DG A E H IDL++ ++ LP I G+
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFA--EHEIDLIMLDIMLPEIDGW 62
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
++ + + +P+IM++ L GA +++ KP
Sbjct: 63 SVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKP 103
>TIGR_CMR|SPO_0022 [details] [associations]
symbol:SPO_0022 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008152
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
SUPFAM:SSF81606 RefSeq:YP_165295.1 ProteinModelPortal:Q5LWH9
GeneID:3194721 KEGG:sil:SPO0022 PATRIC:23373275
HOGENOM:HOG000291805 OMA:ERKWGDL ProtClustDB:CLSK933114
Uniprot:Q5LWH9
Length = 445
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 43/143 (30%), Positives = 69/143 (48%)
Query: 16 IDLETEKDGSSEVVRTR-WES---FLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAV 71
+ L K G + V+ R E+ P + RVL+V+ R+I+S+ L+K G+ V
Sbjct: 11 VSLALVKSGQTTVLHGREMEAQTDMEPGAIRRVLVVDDSRLQRRILSSSLKKWGFEVIEA 70
Query: 72 PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISM 131
G A E C DLVL++ +P +SG + + + I+++ +
Sbjct: 71 ESGEEAMEI--CARAMPDLVLSDWVMPGMSGVDFCEAFRQLNSDRYCYFILLTSKSEKNE 128
Query: 132 VLKCMLKGAADFLIKPVRRNELR 154
V + + GA DFLIKPV +ELR
Sbjct: 129 VAQGLDAGADDFLIKPVSSDELR 151
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 127 (49.8 bits), Expect = 0.00012, P = 0.00012
Identities = 32/124 (25%), Positives = 62/124 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+V+ +D+ R+++S G+ +G A L H D+VL ++ +P + G
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALH-LFADIHP-DVVLMDIRMPEMDG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
L + H+ PVI+M+ + + ++ + GA D++IKP +EL + Q +
Sbjct: 64 IKALKEMRSHET--RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121
Query: 163 RHSL 166
S+
Sbjct: 122 LQSM 125
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 44 VLLVEADDSTRQIISALLRKCGYR-VAAVPDG-LAAWETLKCRPHSID--LVLTEVELPS 99
+LLVE + + LR+ G + V DG A + + P +D LVL +++LP
Sbjct: 6 ILLVEDNPDDEFLALRALRRHGLQDVVVARDGEQAVGQLFEAAP-PLDPWLVLLDLKLPK 64
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
++G +L + + ++ PVI++S + V+KC G +L KP+
Sbjct: 65 MNGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPI 113
>TAIR|locus:2051104 [details] [associations]
symbol:BBX12 "B-box domain protein 12" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC002332 EMBL:BT002067 EMBL:AY128321
EMBL:BT006572 IPI:IPI00527026 IPI:IPI00539934 PIR:C84746
RefSeq:NP_850211.1 RefSeq:NP_973589.1 UniGene:At.43493
IntAct:O22800 STRING:O22800 EnsemblPlants:AT2G33500.1 GeneID:817915
KEGG:ath:AT2G33500 TAIR:At2g33500 eggNOG:NOG269245
HOGENOM:HOG000243233 InParanoid:O22800 OMA:ATHERSA PhylomeDB:O22800
ProtClustDB:CLSN2713949 Genevestigator:O22800 Uniprot:O22800
Length = 402
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 44/180 (24%), Positives = 78/180 (43%)
Query: 527 SGLQPAWSP-NSSHQKEHHRFPISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSK 585
+G+Q W+ N S + + + NPD + G T N+ + + +
Sbjct: 223 NGMQ--WNATNHSTGQNTQIWDFNLGQSRNPDEPSPVETKGSTFTFNNVTHLKNDTRTTN 280
Query: 586 GRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGC 645
++ + + +S G +NN + +S N S T + N
Sbjct: 281 MNAFKESYQQEDSVHSTSTKGQETSKSNNIPAAIHSHKSSNDSCGLHC-TEHIAITSNRA 339
Query: 646 TLFIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
T + N + + RD A+ +++ K+K R YDK +RY++RK+ AE R RVKG+FV+
Sbjct: 340 TRLVAVT-NADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398
>TIGR_CMR|SO_1228 [details] [associations]
symbol:SO_1228 "torcad operon transcriptional regulatory
protein TorR" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 RefSeq:NP_716851.1 ProteinModelPortal:Q8EHJ3
SMR:Q8EHJ3 GeneID:1169054 KEGG:son:SO_1228 PATRIC:23522112
OMA:QHIDLVM Uniprot:Q8EHJ3
Length = 236
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 38/125 (30%), Positives = 60/125 (48%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M VL+V+ + R + K GYRV DG W R H IDL++ ++ LP
Sbjct: 1 MAYSVLVVDDEVVIRARLKGYFEKEGYRVVEAADGEQMWYEFN-RQH-IDLIMLDINLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHD-SISMVLKCMLKGAADFLIKPVRRNELR-NLW 157
+ G L+L E ++ +I++S D SI ++ + GA D++ KP EL +
Sbjct: 59 VDG---LSLTRELRSRSHVGIILVSGRDESIDKIVGLEM-GADDYVTKPFELRELLVRVK 114
Query: 158 QHVWR 162
+WR
Sbjct: 115 NLLWR 119
>TIGR_CMR|GSU_3217 [details] [associations]
symbol:GSU_3217 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_954258.1 ProteinModelPortal:Q747P8 GeneID:2688316
KEGG:gsu:GSU3217 PATRIC:22029287 OMA:MERASGN ProtClustDB:CLSK829165
BioCyc:GSUL243231:GH27-3257-MONOMER Uniprot:Q747P8
Length = 501
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 36/125 (28%), Positives = 62/125 (49%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLK-CRPHSIDLVLTEVELPSIS 101
R+L+V+ + IS +L K G+ VA G A + + RP ++VL ++ LP +S
Sbjct: 5 RILVVDDEKLISWSISTMLEKAGHSVATAASGTEALQKFQNFRP---EVVLLDISLPDMS 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
G +L V E + +++ VIM++ + + + +GA DF KP LR++
Sbjct: 62 GLEILARVKEEN--EDVTVIMITANSNADEAVTAFQRGADDFFGKPFCLETLRHVVDKAL 119
Query: 162 RRHSL 166
R L
Sbjct: 120 ERMKL 124
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 33/127 (25%), Positives = 64/127 (50%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+V+ D R ++ LR+ G+ + DG + + + + ++DLV+ ++ +P G
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDG-SEMQAILLK-QAVDLVILDIMMPGDDG- 63
Query: 104 ALLTLVMEHDVCKNIPVIMMS-LHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
LTL + IP++M++ + + + +L + GA D+L KP EL + + R
Sbjct: 64 --LTLCRQMRANSTIPILMLTAISEEVDRILGLEM-GADDYLSKPFNPRELLARVRAILR 120
Query: 163 RHSLLGG 169
R GG
Sbjct: 121 RSQGGGG 127
>TIGR_CMR|GSU_2313 [details] [associations]
symbol:GSU_2313 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001054
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
Pfam:PF00990 GO:GO:0006355 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P08402 HOGENOM:HOG000167205 RefSeq:NP_953362.1
ProteinModelPortal:Q74AN9 GeneID:2687341 KEGG:gsu:GSU2313
PATRIC:22027481 OMA:ARYRYLC ProtClustDB:CLSK763191
BioCyc:GSUL243231:GH27-2319-MONOMER Uniprot:Q74AN9
Length = 301
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 34/141 (24%), Positives = 73/141 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+R+L+ + D ++R +++ L+++ GY V DG AWE L+ + + L + + +P +
Sbjct: 1 MRILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEELQ-KSDAPKLAVLDWVMPVMD 59
Query: 102 GFALLTLVMEHDVCKNIP-VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G ++ V +++P +++++ + V++ + GA D++ KP ELR Q V
Sbjct: 60 GVEVIRQVRARSA-EHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGELRARIQ-V 117
Query: 161 WRRHSLLGGHVPQNLHDVYHK 181
RR L + + + H+
Sbjct: 118 GRRTVELHSRLQETQEALNHQ 138
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/107 (23%), Positives = 54/107 (50%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 40/135 (29%), Positives = 64/135 (47%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL++E D S ++ L G+ V +G + K DL+L ++ LP I G
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLK--KALEEEYDLILLDLMLPGIDG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNEL-RNLWQHV 160
F +L V K+ PV+++S + I + L GA D++ KP +EL + H+
Sbjct: 61 FEVLRKVRAE---KDTPVLLVSARREDIDKIRGLGL-GADDYITKPFSPSELVARVKAHI 116
Query: 161 WRRHSLLGGHVPQNL 175
R L GG Q+L
Sbjct: 117 GRYERLTGGRKNQDL 131
>UNIPROTKB|Q9KRK2 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 29/112 (25%), Positives = 59/112 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+++L+VE D Q I + L + G+ DG+ A + D+++ ++ LP +
Sbjct: 1 MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDA--LYRATAEEWDVIVLDLGLPKLD 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +L + + ++ N PV+++S D+++ ++ + GA D+L KP EL
Sbjct: 59 GLTVLKGIRDENI--NTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVEL 108
>TIGR_CMR|VC_1638 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 29/112 (25%), Positives = 59/112 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+++L+VE D Q I + L + G+ DG+ A + D+++ ++ LP +
Sbjct: 1 MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDA--LYRATAEEWDVIVLDLGLPKLD 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +L + + ++ N PV+++S D+++ ++ + GA D+L KP EL
Sbjct: 59 GLTVLKGIRDENI--NTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVEL 108
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 26/113 (23%), Positives = 61/113 (53%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWET-LKCRPHSIDLVLTEVELPSI 100
+RVL+++ D+ R + ++ G+ +G E ++ +P D+VL + +P++
Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVREKP---DMVLVDYHMPAL 57
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G + + E D + +P+I++++ + + K + GA+DF +KP++ +L
Sbjct: 58 DGLDTVERIREID--QGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDL 108
>DICTYBASE|DDB_G0291424 [details] [associations]
symbol:DDB_G0291424 "Transcription factor SKN7"
species:44689 "Dictyostelium discoideum" [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
dictyBase:DDB_G0291424 EMBL:AAFI02000177 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_635201.1
ProteinModelPortal:Q54EN9 EnsemblProtists:DDB0183884 GeneID:8628146
KEGG:ddi:DDB_G0291424 InParanoid:Q54EN9 OMA:MCANITD
ProtClustDB:CLSZ2429563 Uniprot:Q54EN9
Length = 902
Score = 123 (48.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
VLLVE + ++IS ++ + + V +G A + K P +LVL ++ +P + G
Sbjct: 711 VLLVEDNPLQIKVISKVMERYNFDVEVASNGQMALDMFKANPR-YELVLMDMIMPIMDGL 769
Query: 104 ALLTLVMEHDV---CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158
L+ E++ K PVI+ + S L C+ G DF+ KP+ + + W+
Sbjct: 770 TATMLIREYERERGLKRTPVIIQTADSRESHKLICLAAGCDDFMTKPLDKRFVDRAWK 827
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 395 LRKSFPSTSNDQGNDERHTLNHSAASAFSWYNNSKACPTPTSNSAELKDGSSKSDEILSN 454
L + F ST N+ N+ + N+++ + NNS +N+ + S + ++N
Sbjct: 829 LNEEFDSTDNNNNNNNNNNNNNNSNNN----NNSNNNNNSNNNNYNNNNNRENSGDNVNN 884
Query: 455 QLSENATGGF 464
S N GF
Sbjct: 885 N-SSNINNGF 893
Score = 49 (22.3 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 600 NQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGI 656
N S+N+ N NNS++ Y+ N+++ + SG N+N + I++GF+ I
Sbjct: 850 NNSNNNNNSNN-NNNSNNNNYN----NNNNRENSG-----DNVNNNSSNINNGFSNI 896
>TIGR_CMR|SPO_A0237 [details] [associations]
symbol:SPO_A0237 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR000641 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR00819 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165066.1
ProteinModelPortal:Q5LKZ2 GeneID:3196880 KEGG:sil:SPOA0237
PATRIC:23381812 Uniprot:Q5LKZ2
Length = 446
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 31/116 (26%), Positives = 59/116 (50%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+++ D S R + LL G++V A+ L P D++L+++ +P ++G
Sbjct: 9 ILVIDDDKSMRLSLVDLLEAAGWQVEAIARATLVAAKLDDNPP--DVILSDIRMPGMTGL 66
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
LL+ ++H P++++S H I M ++ M GA F+ KP L ++ H
Sbjct: 67 ELLSS-LDHASAP--PLVLISAHGDIPMAVQAMRDGAYSFVEKPYEPRRLLSILTH 119
>TIGR_CMR|CPS_4496 [details] [associations]
symbol:CPS_4496 "aerobic respiration control protein ArcA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009061 "anaerobic respiration"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K07773
ProtClustDB:PRK11173 RefSeq:YP_271144.1 ProteinModelPortal:Q47VM8
SMR:Q47VM8 STRING:Q47VM8 GeneID:3519201 KEGG:cps:CPS_4496
PATRIC:21471817 OMA:WELDENS BioCyc:CPSY167879:GI48-4505-MONOMER
Uniprot:Q47VM8
Length = 233
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 39/112 (34%), Positives = 59/112 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+VE +D TR + L GY V DG + E L R H+I+LV+ ++ LP +G
Sbjct: 5 QILVVEDEDVTRFNLRNLFEAEGYVVFEAVDGNSMAEQL--RLHTINLVIMDINLPGKNG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNEL 153
L L E K++ +I ++ DS I +L + GA D+L KP EL
Sbjct: 63 ---LLLARELTANKDLGLIFLTGRDSDIDKILGLEI-GADDYLTKPFNPREL 110
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 41/125 (32%), Positives = 62/125 (49%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M VL+VE D TR +S + GY+V G E L+ + IDLVL ++ LP
Sbjct: 1 MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALEL--NDIDLVLLDINLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELR-NLW 157
G LLT + I +I+++ DSI ++ + GA D++ KPV EL+ +
Sbjct: 59 EDGL-LLTRELRSQ--SEIGIILVTGRTDSIDKIVGLEM-GADDYVTKPVDLRELQVRVK 114
Query: 158 QHVWR 162
+WR
Sbjct: 115 NLLWR 119
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 41/125 (32%), Positives = 62/125 (49%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M VL+VE D TR +S + GY+V G E L+ + IDLVL ++ LP
Sbjct: 1 MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALEL--NDIDLVLLDINLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNELR-NLW 157
G LLT + I +I+++ DSI ++ + GA D++ KPV EL+ +
Sbjct: 59 EDGL-LLTRELRSQ--SEIGIILVTGRTDSIDKIVGLEM-GADDYVTKPVDLRELQVRVK 114
Query: 158 QHVWR 162
+WR
Sbjct: 115 NLLWR 119
>ASPGD|ASPL0000074067 [details] [associations]
symbol:nikA species:162425 "Emericella nidulans"
[GO:0007234 "osmosensory signaling via phosphorelay pathway"
evidence=ISS] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071470 "cellular response to osmotic stress"
evidence=IMP] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEA]
[GO:0071473 "cellular response to cation stress" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 EMBL:BN001303
ProteinModelPortal:C8V8F5 EnsemblFungi:CADANIAT00005966 OMA:IGMTQLT
Uniprot:C8V8F5
Length = 1297
Score = 130 (50.8 bits), Expect = 0.00022, P = 0.00022
Identities = 30/113 (26%), Positives = 63/113 (55%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LL E +D +++ +L K + V+ V +GL A E +K R + D++L +V++P + GF
Sbjct: 1109 ILLAEDNDVNQKLAVKILEKHNHNVSVVGNGLEAVEAVKQRRY--DVILMDVQMPVMGGF 1166
Query: 104 ALLTLVMEHDVCKNI---PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ E++ + P+I ++ H + KC+ ++L KP+++N++
Sbjct: 1167 EATGKIREYERDSGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQM 1219
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 118 (46.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 33/135 (24%), Positives = 69/135 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS-I 100
+R+LL+E D + + + A L G+ + + ++ + D+V+ ++ P I
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G+ +L + E + +PV+++S S+S +K + GA D++ KP ++EL + +
Sbjct: 61 DGYDILVKLRESGI--KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAI 118
Query: 161 WRRHSLLGGHVPQNL 175
RR GH P+++
Sbjct: 119 VRRTR---GH-PESI 129
Score = 43 (20.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 578 QTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSS 628
+ + +++G P +R G+ A N CNG + + Y I+ SS
Sbjct: 116 KAIVRRTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSS 166
>TIGR_CMR|GSU_2287 [details] [associations]
symbol:GSU_2287 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953336.1 ProteinModelPortal:Q74AR5 GeneID:2686930
KEGG:gsu:GSU2287 PATRIC:22027433 OMA:HERDMEA
BioCyc:GSUL243231:GH27-2270-MONOMER Uniprot:Q74AR5
Length = 136
Score = 101 (40.6 bits), Expect = 0.00025, P = 0.00025
Identities = 33/121 (27%), Positives = 61/121 (50%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSID--LVLTEVEL 97
+ +LLVE + + +L+K R+ V DG+ A L + + VL +++L
Sbjct: 7 ITMLLVEDNPDEEFLTRRVLKKFPALSRIDVVKDGVEALRYLTVAENRVPPRFVLLDLKL 66
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV---RRNELR 154
P + G +L + + + ++IPV++++ D + C GAA FL KP+ R +E+
Sbjct: 67 PRVDGVDVLREMRKREETRDIPVVVLTSSDHERDMEACGKLGAAHFLQKPLDAGRMSEVL 126
Query: 155 N 155
N
Sbjct: 127 N 127
>TIGR_CMR|SO_2426 [details] [associations]
symbol:SO_2426 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
ProtClustDB:CLSK906726 Uniprot:Q8EEF6
Length = 227
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELPSIS 101
R+LLV+ D R ++ +L+ G+ V +G+ E L C R + D+V+ ++ +P +
Sbjct: 3 RILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGV---EGLTCIRSFAPDIVMLDLVMPQMD 59
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
GF LL E C P++M+S D+ ++ GA DFL KP EL Q +
Sbjct: 60 GFELLQ-ARE---CMT-PIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIE 114
Query: 162 RR 163
RR
Sbjct: 115 RR 116
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 28/116 (24%), Positives = 61/116 (52%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVEL 97
M + L+++ + R+ I L++ DGL ++TL + +DLVL ++E+
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLL--NNKVDLVLCDLEM 58
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
P + GF L++ +++P+I+++ + ++ + +GA+D++ KP EL
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 28/116 (24%), Positives = 61/116 (52%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVEL 97
M + L+++ + R+ I L++ DGL ++TL + +DLVL ++E+
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLL--NNKVDLVLCDLEM 58
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
P + GF L++ +++P+I+++ + ++ + +GA+D++ KP EL
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L++E + + + +S L GY V +G +T DL+L ++ LP + G
Sbjct: 4 KILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDT--ALEKDFDLILLDLMLPEMDG 61
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
F + T ++ + K ++MM+ DS+ ++ + +GA D+++KP EL + ++R
Sbjct: 62 FEI-TRRLQAE--KTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFR 118
Query: 163 RHSL 166
R +
Sbjct: 119 RQEI 122
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 129 (50.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/124 (23%), Positives = 66/124 (53%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ +LL++ D ++ ++++L++ RV +V A ++ + I L++ +E+P I
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
+ L ++ K+IP+I+++ + K A L KP+ ++++N+WQHV+
Sbjct: 73 SHSFLNALL----LKDIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVF 128
Query: 162 RRHS 165
+ S
Sbjct: 129 SKKS 132
Score = 45 (20.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/93 (25%), Positives = 38/93 (40%)
Query: 167 LGGHVPQNLHDVYHKGGAISENNMXXXXXXXXXXXXQKNKGSEKVSDAQSSRTSSPY--L 224
+GG + + H V+ G +++ +M N +S SS SS Y L
Sbjct: 356 IGGKLDLSNHSVH--GNVLNKLSMNVNFVPSTIS---NNPAYNILSIDSSSIDSSSYTGL 410
Query: 225 EAESAYMQNMQGLSQLKCRS-ASNTCSTDMERQ 256
+ +N L L ASNTC++ ME +
Sbjct: 411 VSTGLSSENSPILYGLPSNDGASNTCTSQMESE 443
Score = 40 (19.1 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 686 YQSRKSLAEQRPRVKGQFVRQVKNETKD 713
+Q RKS+A + + +++N+ K+
Sbjct: 188 FQKRKSIANVEWKTTPSYAIEIENKRKE 215
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 122 (48.0 bits), Expect = 0.00029, P = 0.00029
Identities = 40/129 (31%), Positives = 67/129 (51%)
Query: 592 LRHGSPAGNQSSNSGLCNGLANNSSSGT----YSRIDRNSSSAKASGTGTVPQNLNGCTL 647
+++GS +G +++G N A SS T S ++S + GTV Q + +
Sbjct: 236 IKYGS-SGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDPASQ 294
Query: 648 FIHDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFV-RQ 706
I ++ R+A + ++R KRK R ++K +RY SRK+ AE RPRV G+F R+
Sbjct: 295 MIT-----VTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKRE 349
Query: 707 VKNETKDAN 715
++ E + N
Sbjct: 350 IEAEEQGFN 358
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 35/123 (28%), Positives = 59/123 (47%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L ++ +D II + L K G+ V AV + L + C H DL+L +V +P I G
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNPLTIPKEKFC--H-YDLILLDVMMPEIDG 59
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR-NLWQHVW 161
F L + + + P++ ++ ++ + G D++ KP ELR + HV
Sbjct: 60 FTLCKEIRDF---VDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHVR 116
Query: 162 RRH 164
R H
Sbjct: 117 REH 119
>TAIR|locus:2195518 [details] [associations]
symbol:AT1G63820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002684 GenomeReviews:CT485782_GR
HOGENOM:HOG000090374 ProtClustDB:CLSN2681537 EMBL:AK176159
IPI:IPI00542615 RefSeq:NP_176567.2 UniGene:At.50956
EnsemblPlants:AT1G63820.1 GeneID:842685 KEGG:ath:AT1G63820
TAIR:At1g63820 eggNOG:NOG240378 InParanoid:Q67ZF8 OMA:TQRNFTK
PhylomeDB:Q67ZF8 ArrayExpress:Q67ZF8 Genevestigator:Q67ZF8
Uniprot:Q67ZF8
Length = 293
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 30/107 (28%), Positives = 57/107 (53%)
Query: 600 NQSSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISAR 659
N +S + + S+G + R+ + ++ + ++ + T+F D + R
Sbjct: 128 NSPEDSFFSDHMRRVYSTGDLQNLGRDFTGQRSYSSPLAAES-SPTTVFSGDEQSLRVGR 186
Query: 660 HSSQ-RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
+SS+ R ++K+R KR R + K ++Y RK+LA+ RPRV+G+F R
Sbjct: 187 YSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFAR 233
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
Identities = 34/114 (29%), Positives = 54/114 (47%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M RVL+VE D TR+ ++ + G+ V DG D ++ + LP
Sbjct: 1 MSRRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREG--LYHATDGGFDAMVLDRMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ G AL+ V + N PVIM++ ++ +K + GA D+L+KP EL
Sbjct: 59 LDGLALIKSVRAAGL--NTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQEL 110
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 123 (48.4 bits), Expect = 0.00033, P = 0.00033
Identities = 28/111 (25%), Positives = 58/111 (52%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R++L++ ++ +++ A+L GY V A E K DLV++++++P + G
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAGDW--DLVVSDIKMPGMDG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+L + D +PVIM++ + ++ ++ + +GA D + KP EL
Sbjct: 64 LEVLQRIKAKDPL--VPVIMITAYATVETSIQALRRGAYDMVTKPFEPEEL 112
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 643 NGCTLFIHDGFNGISARHSSQ----RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPR 698
+G H+ F G+ R+A ++++R KR+ R + KK+RY+ RK AE+RPR
Sbjct: 332 SGAEAHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPR 391
Query: 699 VKGQFVRQ 706
+KG+FV++
Sbjct: 392 MKGRFVKR 399
>TIGR_CMR|GSU_1302 [details] [associations]
symbol:GSU_1302 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845 RefSeq:NP_952355.1
ProteinModelPortal:Q74DL4 GeneID:2686509 KEGG:gsu:GSU1302
PATRIC:22025379 HOGENOM:HOG000131064 OMA:DQADAFE
ProtClustDB:CLSK743117 BioCyc:GSUL243231:GH27-1286-MONOMER
Uniprot:Q74DL4
Length = 835
Score = 126 (49.4 bits), Expect = 0.00035, P = 0.00035
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
L VLLVE +D R + LL RV AV +G A + L+ R +LV ++ +P +
Sbjct: 576 LEVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLRDR--DFELVFMDISMPEMD 633
Query: 102 GFALLTLVMEHDV---CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
G + + ++ P++ ++ H + +C+ +L KP+ R ELR +
Sbjct: 634 GIEATWAIRRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREELRRM 691
>UNIPROTKB|Q4K4F2 [details] [associations]
symbol:chpA "Putative sensor histidine kinase/response
regulator ChpA" species:220664 "Pseudomonas protegens Pf-5"
[GO:0043107 "type IV pilus-dependent motility" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 InterPro:IPR003594
InterPro:IPR004105 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF01584 Pfam:PF01627
Pfam:PF02518 Pfam:PF02895 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50851 PROSITE:PS50894 SMART:SM00073 SMART:SM00260
SMART:SM00387 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 Gene3D:1.10.287.560
SUPFAM:SSF50341 GO:GO:0043107 RefSeq:YP_262881.1
ProteinModelPortal:Q4K4F2 STRING:Q4K4F2 GeneID:3480195
KEGG:pfl:PFL_5823 PATRIC:19881153 HOGENOM:HOG000226064 KO:K02487
KO:K06596 OMA:QIHQLVI ProtClustDB:CLSK458195
BioCyc:PFLU220664:GIX8-5863-MONOMER Uniprot:Q4K4F2
Length = 1969
Score = 130 (50.8 bits), Expect = 0.00035, P = 0.00035
Identities = 35/116 (30%), Positives = 60/116 (51%)
Query: 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVEL 97
PR +L VL+V+ + R++ S LL + G V DG+ A L H+ DL+L ++E+
Sbjct: 1845 PRPML-VLVVDDSVTVRKVTSRLLERHGMNVLTAKDGVDAMALLA--EHTPDLMLLDIEM 1901
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
P + GF + V +++P+IM++ + M G D+L KP + + L
Sbjct: 1902 PRMDGFEVAIQVRNDPRLQHLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQESVL 1957
>TIGR_CMR|CPS_3305 [details] [associations]
symbol:CPS_3305 "DNA-binding response regulator BaeR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0042493 "response to
drug" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K07664 RefSeq:YP_269981.1
ProteinModelPortal:Q47YY9 STRING:Q47YY9 GeneID:3519397
KEGG:cps:CPS_3305 PATRIC:21469577 OMA:VENTHGS
BioCyc:CPSY167879:GI48-3334-MONOMER Uniprot:Q47YY9
Length = 232
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+VE ++ +++ L K GY+ + +G T+K H DL+L ++ LP G
Sbjct: 4 ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVK-NQH-FDLILLDLMLPGKDG- 60
Query: 104 ALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNEL 153
LT+ E NI +IM++ D I +L L GA D++ KP E+
Sbjct: 61 --LTICREIQEFSNIAIIMVTARVDEIDRLLGLEL-GADDYICKPFSPREV 108
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 33/131 (25%), Positives = 61/131 (46%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+V+ + R +I+ L+ GY+V DG L+ + + LV+ ++ +P + G
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLE--ENEVHLVVLDIMMPKVDGI 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163
+ + E K +P+IM+S + + GA D++ KP EL + RR
Sbjct: 64 HMCMKIREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
Query: 164 HSLLGGHVPQN 174
+ + G QN
Sbjct: 121 YMKMNGFAIQN 131
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 115 (45.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 28/114 (24%), Positives = 60/114 (52%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
++ +L+V+ D R+++S L G++ DGL A + K +D+V+ ++ +P+
Sbjct: 4 LIPNILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQ--KINQVKVDMVILDIMMPN 61
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ GF + + ++ +IP+++++ S +K G D+L+KP EL
Sbjct: 62 MDGFDVCFELRKY---YDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIEL 112
Score = 41 (19.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 561 SEQVYGRTGEINHNSVDQTVCEQSKGRPLEQLRH----GSPAGNQSSNSGLCNGLANNSS 616
S+ + T +N + + T+ EQ+ PL++ GS AG S L +
Sbjct: 128 SQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDF 187
Query: 617 SGTYSRID 624
G +D
Sbjct: 188 EGNERTLD 195
>UNIPROTKB|Q9KLN9 [details] [associations]
symbol:VC_A0704 "Phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR025944 PROSITE:PS00688 HSSP:P10958
PIR:E82426 RefSeq:NP_233091.1 ProteinModelPortal:Q9KLN9
DNASU:2612077 GeneID:2612077 KEGG:vch:VCA0704 PATRIC:20085954
KO:K08476 OMA:DIYMPAM ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 122 (48.0 bits), Expect = 0.00039, P = 0.00039
Identities = 39/130 (30%), Positives = 61/130 (46%)
Query: 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
+M VLL++ D L+ G AV D A ++ P +VL ++ +P
Sbjct: 19 KMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQ--PDWNGVVLLDMYMP 76
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLW- 157
+ G LL + D IPVI+++ H I M ++ + GA DFL KP+ +L L
Sbjct: 77 QLHGMELLKQIKAVD--DKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIK 134
Query: 158 QHVWRRHSLL 167
QH+ R S +
Sbjct: 135 QHLELRRSFI 144
>TIGR_CMR|VC_A0704 [details] [associations]
symbol:VC_A0704 "phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00448 GO:GO:0005524 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025944
PROSITE:PS00688 HSSP:P10958 PIR:E82426 RefSeq:NP_233091.1
ProteinModelPortal:Q9KLN9 DNASU:2612077 GeneID:2612077
KEGG:vch:VCA0704 PATRIC:20085954 KO:K08476 OMA:DIYMPAM
ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 122 (48.0 bits), Expect = 0.00039, P = 0.00039
Identities = 39/130 (30%), Positives = 61/130 (46%)
Query: 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
+M VLL++ D L+ G AV D A ++ P +VL ++ +P
Sbjct: 19 KMKSTVLLIDDDQDVLDSYLHLMSIAGLTAKAVIDPTQAMSHIQ--PDWNGVVLLDMYMP 76
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLW- 157
+ G LL + D IPVI+++ H I M ++ + GA DFL KP+ +L L
Sbjct: 77 QLHGMELLKQIKAVD--DKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIK 134
Query: 158 QHVWRRHSLL 167
QH+ R S +
Sbjct: 135 QHLELRRSFI 144
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 124 (48.7 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 22/43 (51%), Positives = 36/43 (83%)
Query: 664 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
R+A+L +++ KR++R + K++RYQ RK AE+RPRVKG+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
Score = 38 (18.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 238 SQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELIVSEKLNRSGSEVAQ 295
+ + C N S +RQ+ + + SL+ + GAS+E +E+ S SEV +
Sbjct: 151 TDVDCGGERNNLSP-YDRQDHGSS--SSSLLRTAMRKGASEEEETTEERWVSYSEVVE 205
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 116 (45.9 bits), Expect = 0.00047, P = 0.00047
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
RVL+V+ D + LR G+ VA DG A + + RP D ++ ++ +P +
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP---DAIVLDINMPVLD 65
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +++T + D ++PV ++S S+ + + GA D+L+KP EL
Sbjct: 66 GVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAEL 115
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+LLV+ ++S R ++A L G+ V +G A L+ S+D+VLT++ +P + G
Sbjct: 11 RILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLLE--KQSVDVVLTDIRMPGLHG 68
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
LL + + ++PV++M+ + +V + +GA L KP
Sbjct: 69 VELLRRIKQER--PDMPVVLMTAFTAEELVDDALAEGAFTVLPKP 111
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 41 VLRVLLVEADDSTRQIISALLRKCG-YR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
+++VL+VE D + + L + G + V AV +A E L+ IDLVL ++ +P
Sbjct: 1 MIKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLE--ESRIDLVLLDIFMP 58
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMS-LHDSISMVLKCMLKGAADFLIKP 147
+GF LL + + K I ++M+S +HD + + K + G D+LIKP
Sbjct: 59 EETGFELLMYIRNQE--KEIDIMMISAVHD-MGSIKKALQYGVVDYLIKP 105
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
Identities = 33/112 (29%), Positives = 54/112 (48%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+R+LLVE D +T + I +L V A G + K + DL+L ++ LP ++
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKL--YDYDLILLDINLPDMN 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +L + + P++++S D +K GA D+L KP R EL
Sbjct: 59 GHEVLRQLRMSRI--ETPILILSGVDDTESKIKGFGFGADDYLTKPFHREEL 108
>TAIR|locus:2043288 [details] [associations]
symbol:AT2G47890 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC005309 EMBL:AC006072 EMBL:BT023413 IPI:IPI00543399
PIR:G84920 RefSeq:NP_182310.1 UniGene:At.12948 STRING:O82256
EnsemblPlants:AT2G47890.1 GeneID:819401 KEGG:ath:AT2G47890
TAIR:At2g47890 eggNOG:NOG271369 HOGENOM:HOG000240051
InParanoid:O82256 OMA:CSRHARA PhylomeDB:O82256
ProtClustDB:CLSN2683730 Genevestigator:O82256 Uniprot:O82256
Length = 332
Score = 119 (46.9 bits), Expect = 0.00050, P = 0.00050
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 608 CNGLANNSSSGTY-SRIDRNSS-SAKASGTGTVPQNLNGC---TLFIHDGFNGISARH-- 660
C+ L N S S +DR SS SG LN C T+ + + S H
Sbjct: 229 CSLLKNLSESDEKPENVDRESSVMVPVSGC------LNRCEEETVMVPVITSTRSMTHEI 282
Query: 661 -SSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
S +R++AL++++ K+K R Y+K +RY+SRK AE R R++G+F +
Sbjct: 283 NSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
>TAIR|locus:2168083 [details] [associations]
symbol:AT5G59990 "AT5G59990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015475 EMBL:AY924872
IPI:IPI00537727 RefSeq:NP_200807.1 UniGene:At.55631
EnsemblPlants:AT5G59990.1 GeneID:836121 KEGG:ath:AT5G59990
TAIR:At5g59990 HOGENOM:HOG000064609 InParanoid:Q9FJD8 OMA:RESSTVW
PhylomeDB:Q9FJD8 ProtClustDB:CLSN2686501 ArrayExpress:Q9FJD8
Genevestigator:Q9FJD8 Uniprot:Q9FJD8
Length = 241
Score = 116 (45.9 bits), Expect = 0.00052, P = 0.00052
Identities = 45/176 (25%), Positives = 74/176 (42%)
Query: 543 HHRFP---ISASVHSNPDVHDSEQV----Y---GRTGEINHNSVDQTVCEQSKGRPLEQL 592
HH+FP ++ + S ++ +E V Y G G +S D S G L
Sbjct: 35 HHQFPPPPLALLMMSQNSLYAAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQ 94
Query: 593 RHGSPAGNQSSNSGLCNGLANNSSSGTYSRI---DRNSSSAKASGTGTVPQNLNGCTLFI 649
R S S N + N+ + D SS + S T N I
Sbjct: 95 RSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRESSTVWSESNA------I 148
Query: 650 HDGFNGISARHSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
+G + ++ + K+R KR R ++K+++Y+ RK+LA+ RPR++G+F R
Sbjct: 149 IEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFAR 204
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 124 (48.7 bits), Expect = 0.00052, P = 0.00052
Identities = 27/114 (23%), Positives = 57/114 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+V+ R ++ L G + +G+ A +K H ID +L ++E+P + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+ L + ++ +N+P+I ++ S + L+ + G +++ KP L N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 124 (48.7 bits), Expect = 0.00052, P = 0.00052
Identities = 27/114 (23%), Positives = 57/114 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+V+ R ++ L G + +G+ A +K H ID +L ++E+P + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+ L + ++ +N+P+I ++ S + L+ + G +++ KP L N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 124 (48.7 bits), Expect = 0.00052, P = 0.00052
Identities = 27/114 (23%), Positives = 57/114 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+V+ R ++ L G + +G+ A +K H ID +L ++E+P + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+ L + ++ +N+P+I ++ S + L+ + G +++ KP L N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 121 (47.7 bits), Expect = 0.00053, P = 0.00053
Identities = 32/110 (29%), Positives = 55/110 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +L+V+ S +I+ L Y+V G+AA E K H D++L +V +P
Sbjct: 1 MTALILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAK--QHQPDVILLDVMMPE 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
+ GF + +IPVI+++ + I ++ + GA DFL+KP +
Sbjct: 59 MDGFETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAK 108
>TAIR|locus:2091082 [details] [associations]
symbol:COL9 "CONSTANS-like 9" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0007623 GO:GO:0008270 GO:GO:0003700
EMBL:AC009176 eggNOG:NOG248444 HOGENOM:HOG000116529
ProtClustDB:CLSN2684850 EMBL:AY049290 IPI:IPI00522412
RefSeq:NP_001030659.1 RefSeq:NP_001118599.1 RefSeq:NP_187422.1
RefSeq:NP_974250.1 UniGene:At.18337 STRING:Q9SSE5 PRIDE:Q9SSE5
EnsemblPlants:AT3G07650.1 EnsemblPlants:AT3G07650.2
EnsemblPlants:AT3G07650.3 EnsemblPlants:AT3G07650.4 GeneID:819956
KEGG:ath:AT3G07650 TAIR:At3g07650 InParanoid:Q9SSE5 OMA:TSHIQTE
PhylomeDB:Q9SSE5 Genevestigator:Q9SSE5 GermOnline:AT3G07650
GO:GO:0048579 Uniprot:Q9SSE5
Length = 372
Score = 121 (47.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 37/98 (37%), Positives = 54/98 (55%)
Query: 609 NGLANNSSSGTYSRIDRNSSSAKASGTGT-VPQNLNGCTLFIHDGFNGISARHSSQRDAA 667
+G+ SS+G + SSS + SG P L D N S HS R+ A
Sbjct: 270 SGVTGESSAGDFQECGA-SSSIQLSGEPPWYPPTLQ-------DN-NACS--HSVTRNNA 318
Query: 668 LTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
+ +++ K+K R +DK+VRY SRK+ A+ R RVKG+FV+
Sbjct: 319 VMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVK 356
Score = 42 (19.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 311 TMPQGEGEGPKNDRINADITYGIHGCNDELIEPSSGAIDLIGTFDNHQE 359
++PQG+ K+ + D YG G DE+ +L GT N E
Sbjct: 166 SVPQGKSSSAKDVGMCEDDFYGNLGM-DEVDMALENYEELFGTAFNPSE 213
>CGD|CAL0003772 [details] [associations]
symbol:SKN7 species:5476 "Candida albicans" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:1900436
"positive regulation of filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:1900445
"positive regulation of filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0034599
"cellular response to oxidative stress" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000747 "conjugation with cellular
fusion" evidence=IEA] [GO:0035690 "cellular response to drug"
evidence=IEA] [GO:0008361 "regulation of cell size" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IEA] [GO:0000304
"response to singlet oxygen" evidence=IEA] [GO:0009405
"pathogenesis" evidence=IEA] [GO:0000981 "sequence-specific DNA
binding RNA polymerase II transcription factor activity"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 CGD:CAL0003772 GO:GO:0005634 GO:GO:0071216
GO:GO:0036180 GO:GO:1900445 GO:GO:0034599 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009267
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
GO:GO:0036170 EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:1900436
KO:K15859 RefSeq:XP_716809.1 RefSeq:XP_716869.1
ProteinModelPortal:Q5A4X5 STRING:Q5A4X5 GeneID:3641499
GeneID:3641563 KEGG:cal:CaO19.8586 KEGG:cal:CaO19.971
Uniprot:Q5A4X5
Length = 559
Score = 122 (48.0 bits), Expect = 0.00056, P = 0.00056
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
+P VLLVE D+ Q+ L K G V V DGL A T++ + DLVL ++
Sbjct: 419 VPNPKFHVLLVEDDNVCIQLCRKFLVKYGCSVTVVTDGLNAISTVEHTKY--DLVLMDIV 476
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+P++ G +++ D P+I M+ + + ++ + G +D L KP +++L
Sbjct: 477 MPNLDGATATSVIRSFDT--KTPIIAMTGNIEDNDLVTYLQNGMSDILAKPFTKDDL 531
>UNIPROTKB|Q5A4X5 [details] [associations]
symbol:SKN7 "Potential HSF-type DNA binding transcription
factor" species:237561 "Candida albicans SC5314" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0034599
"cellular response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=ISS] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] [GO:1900436 "positive regulation of
filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR000232 InterPro:IPR001789 InterPro:IPR014402
Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595 PRINTS:PR00056
PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415 SMART:SM00448
CGD:CAL0003772 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 GO:GO:0034599 GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009267 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0036170
EMBL:AACQ01000063 EMBL:AACQ01000062 GO:GO:1900436 KO:K15859
RefSeq:XP_716809.1 RefSeq:XP_716869.1 ProteinModelPortal:Q5A4X5
STRING:Q5A4X5 GeneID:3641499 GeneID:3641563 KEGG:cal:CaO19.8586
KEGG:cal:CaO19.971 Uniprot:Q5A4X5
Length = 559
Score = 122 (48.0 bits), Expect = 0.00056, P = 0.00056
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
+P VLLVE D+ Q+ L K G V V DGL A T++ + DLVL ++
Sbjct: 419 VPNPKFHVLLVEDDNVCIQLCRKFLVKYGCSVTVVTDGLNAISTVEHTKY--DLVLMDIV 476
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+P++ G +++ D P+I M+ + + ++ + G +D L KP +++L
Sbjct: 477 MPNLDGATATSVIRSFDT--KTPIIAMTGNIEDNDLVTYLQNGMSDILAKPFTKDDL 531
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 115 (45.5 bits), Expect = 0.00056, P = 0.00056
Identities = 31/115 (26%), Positives = 63/115 (54%)
Query: 42 LRVLLVEADDSTRQIISALLR-KC-GYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELP 98
+++LL+E D +IS + + C RV + G E+++ P D++L ++ LP
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVISASSGRKGIESVESVNP---DIILLDLGLP 57
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
++GF +L + ++P+I++++ S V++ + GA D++ KP R+ EL
Sbjct: 58 DMNGFDVLKQIRNFS---DVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMEL 109
>TIGR_CMR|SPO_2629 [details] [associations]
symbol:SPO_2629 "C4-dicarboxylate transport
transcriptional regulatory protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
ProtClustDB:CLSK751600 Uniprot:Q5LQ67
Length = 409
Score = 120 (47.3 bits), Expect = 0.00057, P = 0.00057
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M+ +VLLV+ D + R+ + L Y V +AA + + + +++++ +P
Sbjct: 1 MIGKVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHITATFDGV--IVSDIRMPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
GF LL+ D+ ++PVI+++ I M ++ M GA DFL KP +L
Sbjct: 59 RDGFHLLSYAQ--DIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADL 110
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 120 (47.3 bits), Expect = 0.00059, P = 0.00059
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 664 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
R+A ++++R KR+ R + KK+RY+ RK AE+RPR+KG+FV++
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 116 (45.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 33/135 (24%), Positives = 69/135 (51%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS-I 100
+R+LL+E D + + + A L G+ + + ++ + D+V+ ++ P I
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G+ +L + E + +PV+++S S++ +K + GA D++ KP ++EL + V
Sbjct: 61 DGYDILVKLRESGI--RVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAV 118
Query: 161 WRRHSLLGGHVPQNL 175
RR GH P+++
Sbjct: 119 VRRTR---GH-PESI 129
Score = 42 (19.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 578 QTVCEQSKGRPLEQLRHGSPAGNQSSNSGLCNGLANNSSSGTYSRIDRNSS 628
+ V +++G P +R G+ + N CNG + + Y I+ SS
Sbjct: 116 KAVVRRTRGHPESIVRVGNISINLDHKCVSCNGNIIHLTKKEYGMIELLSS 166
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 123 (48.4 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 21/44 (47%), Positives = 35/44 (79%)
Query: 663 QRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
+R+A + +++ KR+ R + KK+RY+ RK AEQRPR+KG+FV++
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387
Score = 40 (19.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 442 KDGSSKSDEILSNQLSENATGGFQPCCATSSNSRENMTSLVMGQSEQAAVAFAGPHLGFI 501
KD DE + ++ GG + +SN ++ TSL + + + AV A + G
Sbjct: 238 KDLKRVKDEDEEEEEAKCENGGSKDSDREASNDKDRKTSLFL-RLDYGAVISAWDNHGSP 296
Query: 502 PVPGVRFDNIFAG 514
G++ + + G
Sbjct: 297 WKTGIKPECMLGG 309
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 36/123 (29%), Positives = 58/123 (47%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWET-LKCRPHSIDLVLTEVELPSI 100
LR+LL E D++ ++ L+ GY PDG A ++ LK + DL + +V +P
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLK---NKYDLCVFDVMMPKK 64
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
GF L V + IP+I ++ +L+ GA D++ KP EL + +
Sbjct: 65 DGFTLAQEVRAANA--EIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAI 122
Query: 161 WRR 163
RR
Sbjct: 123 LRR 125
>TIGR_CMR|APH_0196 [details] [associations]
symbol:APH_0196 "nitrogen assimilation regulatory protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K13599
ProtClustDB:CLSK749342 RefSeq:YP_504819.1 ProteinModelPortal:Q2GLD2
STRING:Q2GLD2 GeneID:3930623 KEGG:aph:APH_0196 PATRIC:20948964
OMA:MHARILI BioCyc:APHA212042:GHPM-230-MONOMER Uniprot:Q2GLD2
Length = 462
Score = 120 (47.3 bits), Expect = 0.00069, P = 0.00069
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS--IS 101
VL+V+ + R +I +LR Y DGL+A + R D+VL ++ L I
Sbjct: 12 VLIVDDEADLRAMIQDILRDDNYVTRVAADGLSAMKLAYEREP--DVVLLDIWLKGSDID 69
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
G ++L + E ++PVIM+S H +I+ +K + GA D++ KP N L+
Sbjct: 70 GLSVLEKLKER--YPSLPVIMISGHGNIATAVKSLHIGAYDYIEKPFTENRLK 120
>TAIR|locus:2017582 [details] [associations]
symbol:ZML2 "ZIM-LIKE 2" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000679 InterPro:IPR010402
InterPro:IPR013088 Pfam:PF00320 Pfam:PF06203 PROSITE:PS00344
PROSITE:PS50114 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 EMBL:AC025294
GO:GO:0043565 GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700
GO:GO:0006351 EMBL:AC024261 eggNOG:NOG303027 HOGENOM:HOG000238783
ProtClustDB:CLSN2688624 InterPro:IPR010399 Pfam:PF06200
PROSITE:PS51320 EMBL:AB119061 EMBL:AY045906 EMBL:AY150395
IPI:IPI00526986 PIR:F96554 RefSeq:NP_564593.1 RefSeq:NP_974002.1
UniGene:At.26180 UniGene:At.37784 ProteinModelPortal:Q8H1G0
SMR:Q8H1G0 IntAct:Q8H1G0 PaxDb:Q8H1G0 EnsemblPlants:AT1G51600.1
EnsemblPlants:AT1G51600.2 GeneID:841585 KEGG:ath:AT1G51600
GeneFarm:3915 TAIR:At1g51600 InParanoid:Q8H1G0 OMA:NNDEAAS
PhylomeDB:Q8H1G0 Genevestigator:Q8H1G0 GermOnline:AT1G51600
Uniprot:Q8H1G0
Length = 302
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 655 GISARHS-SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKD 713
G R S QR A+L +FR KRK R +DKK+RY RK +A + R KGQF N +
Sbjct: 137 GTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEA 196
Query: 714 ANA 716
A+A
Sbjct: 197 ASA 199
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 117 (46.2 bits), Expect = 0.00072, P = 0.00072
Identities = 30/105 (28%), Positives = 56/105 (53%)
Query: 602 SSNSGLCNGLANNSSSGTYSRIDRNSSSAKASGTGTVPQNLNGCTLFIHDGFNGISARHS 661
SSN N L++ ++ S++ R S+ + ++ T+ + N R+S
Sbjct: 153 SSNLSY-NNLSSPENAFFSSQMRRVYSTGDLQNNMEMQRSSENSTMPFSEEQNFKVGRYS 211
Query: 662 SQ-RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVR 705
++ R ++K+R KR R + K ++Y RK+LA+ RPR++G+F R
Sbjct: 212 AEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFAR 256
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 114 (45.2 bits), Expect = 0.00072, P = 0.00072
Identities = 31/112 (27%), Positives = 59/112 (52%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELPSI 100
+ +L+VE +D+ IS++LR Y A + +E ++ DLVL ++ LP +
Sbjct: 1 MNILIVEDNDAAASTISSILR-LSYHDAKITVCRTGYEAVESVNSDKADLVLLDLGLPDM 59
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
+G +L + H + P+I+++ + VLK + +GA +++ KP R E
Sbjct: 60 NGLKVLDEI--HPIT-GAPIIVVTACEDEENVLKALEQGADEYITKPFRHLE 108
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 114 (45.2 bits), Expect = 0.00078, P = 0.00078
Identities = 40/113 (35%), Positives = 54/113 (47%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++LLV+ D ++ LL G+ V DG A E L SIDL+L +V +P +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLD---DSIDLLLLDVMMPKKNG 59
Query: 103 F-ALLTLVMEHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNEL 153
L L H PVIM++ S + VL L GA D+L KP EL
Sbjct: 60 IDTLKALRQTHQT----PVIMLTARGSELDRVLGLEL-GADDYLPKPFNDREL 107
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 115 (45.5 bits), Expect = 0.00080, P = 0.00080
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSI 100
+RVLLV+ + + ++ L G+ V DG A K P D+++ ++ LP +
Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGP---DVLVLDIMLPDV 88
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G +L V E DV P + ++ DS+ + + GA D++ KP EL + +
Sbjct: 89 DGLEILRRVRESDVYT--PTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGL 146
Query: 161 WRRHSLL 167
RR S L
Sbjct: 147 LRRSSHL 153
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 123 (48.4 bits), Expect = 0.00083, P = 0.00083
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98
++ + V+ V+ + + ++I ALL V G A E K P DL+L ++++P
Sbjct: 665 KLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMP 722
Query: 99 SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
+ G L+ + + PVI ++ H K + G +D+L KP+ L NL
Sbjct: 723 DMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 96 (38.9 bits), Expect = 0.00086, P = 0.00086
Identities = 28/108 (25%), Positives = 51/108 (47%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISG 102
VL+ + ++ + + ++ G RV +G + ++ P L+L ++ LP G
Sbjct: 6 VLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPDADG 65
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRR 150
+L V E + +PV+MM+ + +V GA+DFL KP R
Sbjct: 66 LEILHRVKE--LRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPFTR 111
>TAIR|locus:505006360 [details] [associations]
symbol:ZML1 "ZIM-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000679 InterPro:IPR010402
InterPro:IPR013088 InterPro:IPR018467 Pfam:PF00320 Pfam:PF09425
PROSITE:PS00344 PROSITE:PS50114 PROSITE:PS51017 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 EMBL:AB023045
GO:GO:0043565 GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700
GO:GO:0006351 EMBL:AB119060 EMBL:AY042817 EMBL:AY064628
EMBL:AY085109 EMBL:AK118169 IPI:IPI00528960 IPI:IPI00530061
RefSeq:NP_566676.1 RefSeq:NP_850618.1 UniGene:At.20286
ProteinModelPortal:Q8GXL7 SMR:Q8GXL7 IntAct:Q8GXL7
EnsemblPlants:AT3G21175.1 GeneID:821670 KEGG:ath:AT3G21175
GeneFarm:3917 TAIR:At3g21175 eggNOG:NOG303027 HOGENOM:HOG000238783
InParanoid:Q8GXL7 OMA:NGRMHIG PhylomeDB:Q8GXL7
ProtClustDB:CLSN2688624 Genevestigator:Q8GXL7 GermOnline:AT3G21175
InterPro:IPR010399 Pfam:PF06200 SMART:SM00979 PROSITE:PS51320
Uniprot:Q8GXL7
Length = 297
Score = 116 (45.9 bits), Expect = 0.00086, P = 0.00086
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 652 GFNGISARHS-SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 710
G +G R S QR A+L +FR KRK R +DK +RY RK +A + R KGQF K+
Sbjct: 130 GLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFT-SAKSS 188
Query: 711 TKDANADG 718
D+ + G
Sbjct: 189 NDDSGSTG 196
>POMBASE|SPAC8C9.14 [details] [associations]
symbol:prr1 "transcription factor Prr1" species:4896
"Schizosaccharomyces pombe" [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000978 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding"
evidence=NAS] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:1900406 "regulation
of conjugation with cellular fusion by regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:1900427
"regulation of cellular response to oxidative stress by regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000232 InterPro:IPR001789 InterPro:IPR014402
Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595 PRINTS:PR00056
PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415 SMART:SM00448
PomBase:SPAC8C9.14 GO:GO:0005634 EMBL:CU329670 GO:GO:0006950
GenomeReviews:CU329670_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0000978 GO:GO:0001077 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 KO:K15859 EMBL:AB041768
EMBL:AB027943 PIR:T39150 RefSeq:NP_594284.1
ProteinModelPortal:O14283 STRING:O14283 EnsemblFungi:SPAC8C9.14.1
GeneID:2541756 KEGG:spo:SPAC8C9.14 OMA:QHGMNDI OrthoDB:EOG4TMV98
NextBio:20802847 GO:GO:1900427 GO:GO:1900406 Uniprot:O14283
Length = 539
Score = 120 (47.3 bits), Expect = 0.00087, P = 0.00087
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+LLVE D+ +R++ L +V DG+ A K DL+L + LP++ G
Sbjct: 369 RILLVEDDELSRRMTIKFLTSFDCQVDVAVDGIGAVN--KANAGGFDLILMDFILPNLDG 426
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
++ L+ ++D N P++ ++ + S++ + G D L+KP + L L
Sbjct: 427 LSVTCLIRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQL 478
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 118 (46.6 bits), Expect = 0.00089, P = 0.00089
Identities = 20/46 (43%), Positives = 35/46 (76%)
Query: 661 SSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
S R+A + ++R K+K R ++K +RY++RK+ AE RPR+KG+F ++
Sbjct: 323 SMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKR 368
>UNIPROTKB|P23836 [details] [associations]
symbol:phoP "PhoP" species:83333 "Escherichia coli K-12"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000160 "phosphorelay
signal transduction system" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 EMBL:X59307
EMBL:M74924 EMBL:D90393 EMBL:M81433 PIR:A41965 RefSeq:NP_415648.1
RefSeq:YP_489398.1 PDB:2PKX PDB:2PL1 PDBsum:2PKX PDBsum:2PL1
ProteinModelPortal:P23836 SMR:P23836 DIP:DIP-10500N IntAct:P23836
PRIDE:P23836 EnsemblBacteria:EBESCT00000002540
EnsemblBacteria:EBESCT00000002541 EnsemblBacteria:EBESCT00000014814
GeneID:12931100 GeneID:945697 KEGG:ecj:Y75_p1100 KEGG:eco:b1130
PATRIC:32117509 EchoBASE:EB0724 EcoGene:EG10731 KO:K07660
OMA:ADYFLNE ProtClustDB:PRK10816 BioCyc:EcoCyc:PHOP-MONOMER
BioCyc:ECOL316407:JW1116-MONOMER EvolutionaryTrace:P23836
Genevestigator:P23836 Uniprot:P23836
Length = 223
Score = 113 (44.8 bits), Expect = 0.00090, P = 0.00090
Identities = 33/130 (25%), Positives = 64/130 (49%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+RVL+VE + R + ++ G++V D A L H D+ + ++ LP
Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN--EHIPDIAIVDLGLPDED 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
G +L+ +DV ++P+++++ +S ++ + GA D++ KP E+ Q +
Sbjct: 59 GLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116
Query: 162 RRHSLLGGHV 171
RR+S L V
Sbjct: 117 RRNSGLASQV 126
>TIGR_CMR|GSU_2506 [details] [associations]
symbol:GSU_2506 "sensory box protein/sigma-54 dependent
DNA-binding response regulator" species:243231 "Geobacter
sulfurreducens PCA" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00091 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_953552.1
ProteinModelPortal:Q74A84 SMR:Q74A84 GeneID:2687823
KEGG:gsu:GSU2506 PATRIC:22027859 OMA:MVVRDET ProtClustDB:CLSK703425
BioCyc:GSUL243231:GH27-2458-MONOMER Uniprot:Q74A84
Length = 564
Score = 120 (47.3 bits), Expect = 0.00093, P = 0.00093
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M RVL+VE +D+ R L GY V D A ++ + DLV T++ L +
Sbjct: 1 MARRVLIVEDEDTLRFTFEHFLAAEGYAVDTAADFAEAIGKVESADY--DLVFTDIILGN 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+G +L V E +IPV+M++ + ++ + GA D+L KPV+R+ L
Sbjct: 59 DNGIDVLREVKERQ--PSIPVVMITGYPNVETASDAVRLGAFDYLPKPVKRDAL 110
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 118 (46.6 bits), Expect = 0.00094, P = 0.00094
Identities = 20/46 (43%), Positives = 35/46 (76%)
Query: 661 SSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 706
S R+A + ++R K+K R ++K +RY++RK+ AE RPR+KG+F ++
Sbjct: 335 SMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKR 380
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 720 708 0.00083 121 3 11 23 0.45 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 232
No. of states in DFA: 622 (66 KB)
Total size of DFA: 382 KB (2187 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.04u 0.15s 70.19t Elapsed: 00:00:03
Total cpu time: 70.07u 0.15s 70.22t Elapsed: 00:00:03
Start: Sat May 11 11:11:59 2013 End: Sat May 11 11:12:02 2013
WARNINGS ISSUED: 1