BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042954
(720 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSISG 102
+L+V+ DD+ + + +LR GY V G A + + K P D ++ +V LP I G
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLP---DALICDVLLPGIDG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+ L V +H + K +P++ ++ IS + GA D+L KP EL
Sbjct: 64 YTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 19/131 (14%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M VL+VE ++S ++ LLRK G+ V DG AA D+VL ++ LP
Sbjct: 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD--RAGADIVLLDLMLPG 60
Query: 100 ISGFALLTLVMEHDVCK------NIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNE 152
+SG DVCK ++PVIM++ DS I V+ L GA D++ KP E
Sbjct: 61 MSG---------TDVCKQLRARSSVPVIMVTARDSEIDKVVGLEL-GADDYVTKPYSARE 110
Query: 153 LRNLWQHVWRR 163
L + V RR
Sbjct: 111 LIARIRAVLRR 121
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 21/121 (17%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLK-CRPHSIDLVLTEVELP 98
M R+L+V+ D S ++++ +LR G+ A + DG A ++ RP DLVL ++ LP
Sbjct: 4 MRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP---DLVLLDLMLP 60
Query: 99 SISGFALLTLVMEHDVCK------NIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRN 151
++G DVC+ +P++M++ D++ +VL + GA D+++KP +
Sbjct: 61 GMNGI---------DVCRVLRADSGVPIVMLTAKTDTVDVVLG-LESGADDYIMKPFKPK 110
Query: 152 E 152
E
Sbjct: 111 E 111
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 23 DGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETL 81
D SS+ +++ +P VL+V+ T + ++ + G+ + DG A
Sbjct: 21 DSSSKPRGINYDTGIP---FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKY 77
Query: 82 KCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA 141
K +ID+V + +P + G L+ +ME D KN VIM+S +V C++KGA
Sbjct: 78 KNHYPNIDIVTLXITMPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAK 135
Query: 142 DFLIKPVRRNEL 153
F++KP+ R ++
Sbjct: 136 TFIVKPLDRAKV 147
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 38 PRMVLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
P +++L+V+ + R+II L + GY V G+ AWE L + +++T+
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+P ++G L+ V K IP+IM++ + V+ + G ++++KP
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 38 PRMVLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
P +++L+V+ + R+II L + GY V G+ AWE L + +++T+
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+P ++G L+ V K IP+IM++ + V+ + G ++++KP
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
+++L+V+ + R+I+ LLR G+ DGL A LK D V+T+ +P +
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 70
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G LL + + K++PV+M++ +++ G +++KP L+ +
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 130
Query: 161 WRR 163
+ R
Sbjct: 131 FER 133
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VEA+ R+++ +L + G++ D +A L P DL+L E LP
Sbjct: 1 MARRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLEWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG + + + ++IPV+M++ ++ + GA D++ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 160 VWRRHS 165
V RR S
Sbjct: 119 VMRRIS 124
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 38 PRMVLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVE 96
P +++L+V+ + R+II L + GY V G+ AWE L + +++T
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITAWN 60
Query: 97 LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+P ++G L+ V K IP+IM++ + V+ + G ++++KP
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +VLLV+ R+I+S L+K GY V +G A E L + DL++ ++ +P
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLDIMMPV 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMS 124
+ GF +L + E + K IPVI+++
Sbjct: 59 MDGFTVLKKLQEKEEWKRIPVIVLT 83
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +VLLV+ R+I+S L+K GY V +G A E L + DL++ + +P
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLXIMMPV 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMS 124
+ GF +L + E + K IPVI+++
Sbjct: 59 MDGFTVLKKLQEKEEWKRIPVIVLT 83
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWRMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ H ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKP 109
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 59
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 60 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 62 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC--------RPHSIDLVLTEV 95
V +V+ D S R+ + LLR G+ V ET C RP ++ ++
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEV----------ETFDCASTFLEHRRPEQHGCLVLDM 56
Query: 96 ELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
+P +SG L + + IP++ ++ H I M ++ M GA +FL KP L
Sbjct: 57 RMPGMSGIELQEQLTA--ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLK-CRPHSIDLVLTEVELPSI 100
RVL+V+ R ++ ++ K GY VA +G A E K +P D+V ++ +P +
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP---DIVTMDITMPEM 59
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
+G + +M+ D N +I+ S +MV++ + GA DF++KP +
Sbjct: 60 NGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLK-CRPHSIDLVLTEVELPSI 100
RVL+V+ R ++ ++ K GY VA +G A E K +P D+V ++ +P +
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP---DIVTMDITMPEM 60
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
+G + +M+ D N +I+ S +MV++ + GA DF++KP +
Sbjct: 61 NGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
V L++ D R+ + L G+ V++ A L I V++++ +P + G
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGI--VISDIRMPGMDGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
AL ++ D ++P+I+++ H I M ++ + GA DF+ KP + L
Sbjct: 64 ALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
V L++ D R+ + L G+ V++ A L I V++++ +P + G
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGI--VISDIRMPGMDGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
AL ++ D ++P+I+++ H I M ++ + GA DF+ KP + L
Sbjct: 64 ALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
RVLLVE S + ++ Y + V G A + + + +P L++ +++LP +S
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQ---LIILDLKLPDMS 62
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
G +L + ++D+ + VI+ + H S+ + + + KGA DFL KP+ + L+
Sbjct: 63 GEDVLDWINQNDIPTS--VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLK 113
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + R+++ +L + G++ D +A L P DL+L + LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLDWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG + + + ++IPV+M++ ++ + GA D++ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 160 VWRRHS 165
V RR S
Sbjct: 119 VMRRIS 124
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + R+++ +L + G++ D +A L P DL+L + LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLDWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG + + + ++IPV+M++ ++ + GA D++ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 160 VWRRHS 165
V RR S
Sbjct: 119 VMRRIS 124
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL +++P +
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLXMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 62 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 62 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 63
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 64 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 62 GIEILKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELPSISG 102
+L+VE + + + +L + GY+ V +G A L RP DL++++V +P + G
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP---DLIISDVLMPEMDG 66
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
+AL + + IPVI++++ V++ + GA DF+ KP +
Sbjct: 67 YALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M +RVL+VE + +I+ L+K + V DG P D+V+ ++ LP
Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPV 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
G+ +L + E V N PV+M++ + +K + GA D+L KP EL +
Sbjct: 59 HDGWEILKSMRESGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRA 116
Query: 160 VWRRHS 165
+ RR S
Sbjct: 117 LIRRKS 122
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+++ D+ R+ ++A L ++V +GL + + DLV+ ++ P I G
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRXPQIDGL 65
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163
L+ + + P+I++S +S ++ + GAAD+LIKP+ E + +H RR
Sbjct: 66 ELIRRIRQ--TASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL---EDLAVLEHSVRR 120
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G +L + D +NI VI+M+ + + M + GA KP +E+R+
Sbjct: 62 GIEILKRMKVID--ENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
V +V+ D S R ++ L G +G L + + D++L+++ +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
ALL + + +PVI+M+ H + + +GA D+L KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
V +V+ D S R ++ L G +G L + + D++L+++ +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
ALL + + +PVI+M+ H + + +GA D+L KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
V +V+ D S R ++ L G +G L + + D++L+++ +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
ALL + + +PVI+M+ H + + +GA D+L KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ ++P++
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWKMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ + ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+A + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 61
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 108
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVEL 97
P + ++L+VE + R ++ + G DG+ A E L + DL++ ++ +
Sbjct: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--GFTPDLMICDIAM 61
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRR-NELRNL 156
P ++G LL + PV+++S ++++ + K + G D L+KPV+ N LR +
Sbjct: 62 PRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+VE ++ ++ LL GY +GL+A R + DL+L +++LP ISG
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI--ARENKPDLILMDIQLPEISG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMS 124
+ + E D +IPV+ ++
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVT 82
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+++ D+ R+ ++A L ++V +GL + + DLV+ ++ P I G
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRXPQIDGL 65
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163
L+ + + P+I++S S ++ + GAAD+LIKP+ E + +H RR
Sbjct: 66 ELIRRIRQ--TASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL---EDLAVLEHSVRR 120
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+V+ ++ +++ A L Y V+ DG A + R D++L +V +P
Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL-AMAARDLP-DIILLDVMMPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
+ GF + + + ++IPV++++ D ++ + GA+DFL KP+
Sbjct: 59 MDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+++ + + Q I LL G V +SID+V+T++++P +SG
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+L + + + ++ VI+++ H + + M +GA ++L KPV +L +
Sbjct: 65 MDILREIKK--ITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122
Query: 163 RHSLL 167
R LL
Sbjct: 123 RKKLL 127
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ R +++ + K GY+ +GL A + + K RP DLVL ++++P +
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155
G + + D +NI VI+M+ + + M+ + GA KP +E+R+
Sbjct: 62 GIEIAKRMKVID--ENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
V +V+ D S R ++ L G +G L + + D++L+ + +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSXIRMPGMDGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152
ALL + + +PVI+M+ H + + +GA D+L KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+V+ ++ +++ A L Y V+ DG A + R D++L +V +P + G
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTAL-AMAARDLP-DIILLDVMMPGMDG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
F + + + ++IPV++++ D ++ + GA+DFL KP+
Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ ++P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWDMPNM 66
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ + ++ GA+ +++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 113
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M+++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKP 110
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 59
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M + ++ GA+ +++KP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVA---AVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
R+L++E D ++ L GY V + +GL +K R DL+L ++ LP
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGL-----IKAREDHPDLILLDLGLPD 93
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G ++ + ++ +P+I+++ D++ ++ + GA D+LIKP +EL
Sbjct: 94 FDGGDVVQRLRKNSA---LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWMMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + R+++ +L + G++ D +A L P DL+L LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLAWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG + + + ++IPV+M++ ++ + GA D + KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKA 118
Query: 160 VWRRHS 165
V RR S
Sbjct: 119 VMRRIS 124
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M R+L+VE + R+++ +L + G++ D +A L P DL+L LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLAWMLPG 58
Query: 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159
SG + + + ++IPV+M++ ++ + GA D + KP EL +
Sbjct: 59 GSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKA 118
Query: 160 VWRRHS 165
V RR S
Sbjct: 119 VMRRIS 124
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+R+L+ + ++ R ++ LL K G++V V + + D V+ ++ +P ++
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA--EEDYDAVIVDLHMPGMN 72
Query: 102 GFALLTL--VMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
G +L VM+ + PV+++S + + C GA FL KPV
Sbjct: 73 GLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLK---CRPHSIDLVLTEVEL 97
+++L+VE + +++I +L G + DG A++ +K + + +++ +V++
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 62
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
P + G L T ++ D+ P++ ++ S + +C+ G FL KP++R +L+ +
Sbjct: 63 PKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLK---CRPHSIDLVLTEVEL 97
+++L+VE + +++I +L G + DG A++ +K + + +++ +V++
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQM 61
Query: 98 PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156
P + G L T ++ D+ P++ ++ S + +C+ G FL KP++R +L+ +
Sbjct: 62 PKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ ++P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWDMPNM 66
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKP 113
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M+++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKP 110
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ ++P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWDMPNM 66
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 113
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + + R+I LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 59
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ VL++E D R ++ L G +V + G A++ L + ++VL + LP ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLXLLLPDVN 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +L + E VI+++ H +I ++ M GA DFL KP E+
Sbjct: 59 GLEILKWIKERS--PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ V+ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKP 109
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ ++P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWDMPNM 66
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKP 113
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWMMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKP 109
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKP 110
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWRMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ + I+ LRK GY V DG A E + + +P DL+L ++ LP+
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP---DLILLDIMLPNKD 60
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNEL 153
G + V + ++P+IM++ DS I V+ + GA D++ KP EL
Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEI-GADDYVTKPFSTREL 109
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 9/113 (7%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSIS 101
++L+V+ + I+ LRK GY V DG A E + + +P DL+L ++ LP+
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP---DLILLDIMLPNKD 60
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNEL 153
G + V + ++P+IM++ DS I V+ + GA D++ KP EL
Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEI-GADDYVTKPFSTREL 109
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+RVL+VE + +I+ L+K + V DG P D+V+ ++ LP
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHD 60
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161
G+ +L E V N PV+ ++ + +K + GA D+L KP EL + +
Sbjct: 61 GWEILKSXRESGV--NTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALI 118
Query: 162 RRHS 165
RR S
Sbjct: 119 RRKS 122
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 63 KCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122
+CG + AVP +K PH L++TE +P ISG L + ++ +IPVI
Sbjct: 37 QCGNAIEAVP------VAVKTHPH---LIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87
Query: 123 MSLHDSISMVLKCMLKGAADFLIKPV 148
+S + + + G DF+ KPV
Sbjct: 88 LSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 64
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ ++++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFIISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ ++++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFIISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 61 LRKCGYRVAAVPDGLAAWET-LKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119
LR G+ VA DG A + + RP D ++ ++ +P + G +++T + D ++P
Sbjct: 27 LRLSGFEVATAVDGAEALRSATENRP---DAIVLDINMPVLDGVSVVTALRAMD--NDVP 81
Query: 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163
V ++S S+ + + GA D+L+KP EL + + RR
Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKP 110
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 45 LLVEADDST-RQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
LV AD ST R+I+ LL++ G+ V DG+ A L+ + V+++ +P++ G
Sbjct: 9 FLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNMDG 66
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
LL + +PV+M++ ++ GA+ +++KP
Sbjct: 67 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 68 VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHD 127
V DG AA E +K H D+ L + +P + G + V +++ V+++S HD
Sbjct: 44 VGEADDGAAALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSYELPTR--VLLISAHD 99
Query: 128 SISMVLKCMLKGAADFLIKPVRRNEL 153
++V + + +GAA FL+K R E+
Sbjct: 100 EPAIVYQALQQGAAGFLLKDSTRTEI 125
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ VL+V+ ++R A LRK +V A TL+ P +I LVL + P I
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYXPEID 183
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
G +L+ + E + + +I +S+ D + + + +GA DFL +P EL+
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 44 VLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETL-------KCRPHSIDLVLTE 94
++ +E D ++I +R+ G + A DG +A L + LVL +
Sbjct: 7 IVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLD 66
Query: 95 VELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
+ LP +G +L LV E+ + PV++++ D + +C GA ++ KPV
Sbjct: 67 LNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFA 126
Query: 155 N 155
N
Sbjct: 127 N 127
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISXWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISXWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISAWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
RVL+VE + R + ++ G++V D A L H D+ + ++ LP G
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN--EHIPDIAIVDLGLPDEDG 59
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+L+ +DV ++P+++++ +S ++ + GA D++ KP E+ Q + R
Sbjct: 60 LSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXR 117
Query: 163 RHS 165
R+S
Sbjct: 118 RNS 120
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ ++ + +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFIICDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 63
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ + GA+ +++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKP 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M+ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M ++L+V+ ++S ++ L + GY V DG A + K DL++ +V LP
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK--KAETEKPDLIVLDVMLPK 59
Query: 100 ISGFALLTLVMEHDVCKNI-------PVIMMSLHD-SISMVLKCMLKGAADFLIKPVRRN 151
+ G +VCK + P++M++ D VL L GA D++ KP
Sbjct: 60 LDGI---------EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLEL-GADDYMTKPFSPR 109
Query: 152 ELRNLWQHVWRRHSL 166
E+ + + RR +
Sbjct: 110 EVNARVKAILRRSEI 124
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 35 SFLPRMVLRVLLVEADDSTRQIISALL--RKCGYRVAAVPDGLAAWE-TLKCRPHSIDLV 91
S + V+RVL+V+ R ++ ++ + V DGL A E ++ +P D++
Sbjct: 19 SHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKP---DVI 75
Query: 92 LTEVELPSISGFALLTLVMEHDVCKNIPVIMMS--LHDSISMVLKCMLKGAADFLIKP 147
++E+P+++G L L+M+ + VIM+S + ++ ++ + GA DF+ KP
Sbjct: 76 TMDIEMPNLNGIEALKLIMKKAPTR---VIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVL-TEVELPSISG 102
V +V+ ++ R+ ++ +L G+ AV +A L P + VL T++ +P +SG
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGF---AVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
LL + D+ NIP I+++ H + M ++ M GA DF+ KP
Sbjct: 63 VELLRNL--GDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M+ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISXWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M+ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELP 98
M ++L+VE+D + + + L G+ V DG + E ++ RP DLV+ V+L
Sbjct: 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRP---DLVVLAVDLS 60
Query: 99 S-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD-FLIKPVRRNEL 153
+ +G+ + + + D KN+P++++ D + K LK AD ++ KPV ++L
Sbjct: 61 AGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQFRK--LKAHADEYVAKPVDADQL 115
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
RVL+V+ + + +++S L+ G+ V +G A + + R D V+ +V P G
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD--RARETRPDAVILDVXXPGXDG 82
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
F +L + + + P + ++ DS+ + + G D++ KP E+ + + R
Sbjct: 83 FGVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140
Query: 163 R 163
R
Sbjct: 141 R 141
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 31 TRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSID 89
T ++ +PR RVL+ E + R ++ +LR+ GY V DG A E + H D
Sbjct: 6 TDADAAVPR---RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPD 60
Query: 90 LVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
LV+ +V++P G + + + P+++++ +V + GA +L+KP
Sbjct: 61 LVIMDVKMPRRDGIDAASEIASKRIA---PIVVLTAFSQRDLVERARDAGAMAYLVKPFS 117
Query: 150 RNEL 153
++L
Sbjct: 118 ISDL 121
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVL-TEVELPSISG 102
V +V+ ++ R+ ++ +L G+ AV +A L P + VL T + +P +SG
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGF---AVKMHQSAEAFLAFAPDVRNGVLVTXLRMPDMSG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
LL + D+ NIP I+++ H + M ++ M GA DF+ KP
Sbjct: 63 VELLRNL--GDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+VE + TR + ++ GY V DG + L + I+LV+ ++ LP +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--EYDINLVIMDINLPGKNGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL----RNL 156
L + E N+ ++ ++ D+ + + GA D++ KP EL RNL
Sbjct: 64 LLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V++ +P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISXWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M+ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ +L+V+ R++++ L GY+ DG+ A L + ID+VL++V +P++
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 66
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV 148
G+ L + + + +PVI ++ + +C+ G L KPV
Sbjct: 67 GYRLTQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSKPV 111
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL--KCRPHSIDLVLTEVELPSI 100
RVL+V+ ++S +SA+L + GY PD K + +++ +V +P
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYH----PDTAKTLREAEKKIKELFFPVIVLDVWMPDG 58
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G + + E+ + VI+++ H S+ +K + KGA +FL KP +H
Sbjct: 59 DGVNFIDFIKENS--PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHA 116
Query: 161 WRRHS 165
+ +S
Sbjct: 117 FEEYS 121
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELP 98
M ++L+VE+D + + + L G+ V DG + E ++ RP DLV+ V+L
Sbjct: 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRP---DLVVLAVDLS 60
Query: 99 S-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD-FLIKPVRRNEL 153
+ +G+ + + + D KN+P++++ D + K LK AD ++ KPV ++L
Sbjct: 61 AGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRK--LKAHADEYVAKPVDADQL 115
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRV---AAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
VL+VE + + R+ + L G RV + GL L+ DL++ ++ LP
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-----LEAATRKPDLIILDLGLPDG 58
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G + + + +PVI++S S + + GA D+L KP EL+ +
Sbjct: 59 DGIEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115
Query: 161 WRRHS 165
RRHS
Sbjct: 116 LRRHS 120
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+VE + TR + ++ GY V DG + L + I+LV+ ++ LP +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILS--EYDINLVIXDINLPGKNGL 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL----RNL 156
L + E N+ + ++ D+ + + GA D++ KP EL RNL
Sbjct: 64 LLARELREQ---ANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL--KCRPHSIDLVLTEVELPSI 100
RVL+V+ ++S +SA+L + GY PD K + +++ +V P
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYH----PDTAKTLREAEKKIKELFFPVIVLDVWXPDG 57
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160
G + + E+ + VI+++ H S+ +K + KGA +FL KP +H
Sbjct: 58 DGVNFIDFIKEN--SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHA 115
Query: 161 WRRHS 165
+ +S
Sbjct: 116 FEEYS 120
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+++VE + T+ + + + GY V+ G E + S+DL+L ++ LP +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIXQ--NQSVDLILLDINLPDENGL 62
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL----RNLWQH 159
L + E I V S D I ++ + GA D++ KP+ EL +NL
Sbjct: 63 XLTRALRERSTVGIILVTGRS--DRIDRIVG-LEXGADDYVTKPLELRELVVRVKNL--- 116
Query: 160 VWR 162
+WR
Sbjct: 117 LWR 119
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V+ + R+I+ LL++ G+ V DG+ A L+ + V+++ P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYG--FVISDWNXPNX 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+ ++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI 100
L+ L+V + + + LL++ G+ V DG+ A L+ + V+++ +P++
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAGGYG--FVISDWNMPNM 62
Query: 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
G LL + +PV+M++ ++ GA+ +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS 99
M L VL+ E +D R + + L KC + V +GL A + + R D+++ ++++P
Sbjct: 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPV 66
Query: 100 ISGFALLTLVMEHDVCKN 117
+ G ++ + ++ N
Sbjct: 67 MDGLEAVSEIRNYERTHN 84
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELP 98
M ++L+VE+D + + + L G+ V DG + E ++ RP DLV+ V+L
Sbjct: 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRP---DLVVLAVDLS 60
Query: 99 S-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI-KPVRRNEL 153
+ +G+ + + + D KN+P++++ D + K LK AD + KPV ++L
Sbjct: 61 AGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRK--LKAHADEAVAKPVDADQL 115
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+L+V+ + L + GYR G E L P DLVL ++ G+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP--DLVLLDIXXEPXDGW 63
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW-R 162
L + ++IPV+ ++ D+++KP ++L +HV R
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 163 RHSL 166
RHS+
Sbjct: 124 RHSI 127
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ +L+V+ R++++ L GY+ DG+ A L + ID+VL++V +P++
Sbjct: 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMD 187
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
G+ L + + + +PVI ++ + +C+ G L KPV + ++
Sbjct: 188 GYRLTQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIK 238
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 34/64 (53%)
Query: 90 LVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149
++L ++ LP G +L + + +V K IPV++M+ + + C + +++KP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 150 RNEL 153
+ L
Sbjct: 125 IDRL 128
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 90 LVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146
++L ++ +P + G LL + ++IP+I++S + ++ GA D+L+K
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 28/143 (19%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++LLVE + + +++++ G+ + +G+ A + S DLVL +V +P + G
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAIN--SSSYDLVLMDVCMPVLDG 67
Query: 103 FALLTLVMEHD----------------------VC----KNIPVIMMSLHDSISMVLKCM 136
L+ ++ VC +P+I M+ + +C
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 137 LKGAADFLIKPVRRNELRNLWQH 159
G F+ KPV +LR Q
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQ 150
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 65 GYRVAAVPDGLAAWETL-KCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMM 123
G RV V D E + K + D+V ++ +P ++G + +M+ D N +I+
Sbjct: 2 GKRVLIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVC 59
Query: 124 SLHDSISMVLKCMLKGAADFLI 145
S +MV++ + GA DF++
Sbjct: 60 SAMGQQAMVIEAIKAGAKDFIV 81
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 86 HSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145
H DLV+ + ++ + L + KN+P+I++ + ++ + GA D+L
Sbjct: 45 HHPDLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLT 104
Query: 146 KPVRRNEL 153
KP RN+L
Sbjct: 105 KPFNRNDL 112
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
+ VL++E D R ++ L G +V + G A++ L ++VL ++ LP ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS--EKHFNVVLLDLLLPDVN 58
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153
G +L + E VI+++ H +I ++ M GA DFL KP E+
Sbjct: 59 GLEILKWIKERS--PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 20/126 (15%)
Query: 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF 103
+LLV++ + Q + LL Y + D A + L R +DLV++ LP + G
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDG- 73
Query: 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD--FLIKPVRRNELRNLWQHVW 161
P ++ +H + +L G D + K + E+ W
Sbjct: 74 ---------------PTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPW 118
Query: 162 RRHSLL 167
LL
Sbjct: 119 DDQELL 124
>pdb|1TII|A Chain A, Escherichia Coli Heat Labile Enterotoxin Type Iib
Length = 190
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 57 ISALLRKCGYRVAAVPDGLAAWETLKCR 84
+SA + GYR+A PDG AWE + R
Sbjct: 151 LSAAPNEDGYRIAGFPDGFPAWEEVPWR 178
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 24/32 (75%)
Query: 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+++PV++ + + I + ++ + +GA+DF++KP
Sbjct: 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|2B4A|A Chain A, Crystal Structure Of A Response Regulator Receiver Domain
Protein (Bh3024) From Bacillus Halodurans C-125 At 2.42
A Resolution
Length = 138
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS 101
RV LVE + S +I L + G V P G A ++ + + + DL++ +L +S
Sbjct: 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQH-RSQLSTCDLLIVSDQLVDLS 74
Query: 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
F+LL +V E ++ ++ H+ I + +L KP +ELR
Sbjct: 75 IFSLLDIVKEQTKQPSVLILTTGRHELIESS-----EHNLSYLQKPFAISELR 122
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 76 AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKC 135
A + ++ +P ++L ++ +P + G L+ + + ++IP+I++S + +
Sbjct: 53 AIAQAVQIKP---TVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAA 109
Query: 136 MLKGAADFLIK 146
GA D+L+K
Sbjct: 110 FAAGANDYLVK 120
>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2FQ6|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With
N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide
pdb|2GQN|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
pdb|2GQN|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With N-Hydrazinocarbonylmethyl-2-Nitro-Benzamide
Length = 415
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 548 ISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKG 586
+ A H+ + + E YGR G + H S+ Q +CE G
Sbjct: 59 VEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGG 97
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 548 ISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKG 586
+ A H+ + + E YGR G + H S+ Q +CE G
Sbjct: 39 VEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGG 77
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 548 ISASVHSNPDVHDSEQVYGRTGEINHNSVDQTVCEQSKG 586
+ A H+ + + E YGR G + H S+ Q +CE G
Sbjct: 39 VEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGG 77
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+VE + I+ +L K GY V G AA E + + DL+L ++EL G
Sbjct: 7 KILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYP-DLILMDIELG--EG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146
+ + +PV+ ++ H ++V K A +++K
Sbjct: 64 MDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMK 107
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 19/117 (16%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+V+ D S + ++ +LR G+ A + DG A + R DLVL ++ LP +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAV--RELRPDLVLLDLXLPGXNG 64
Query: 103 FALLTLVMEHDVCK------NIPVIMMSLH-DSISMVLKCMLKGAADFLIKPVRRNE 152
DVC+ +P++ ++ D++ +VL + GA D++ KP + E
Sbjct: 65 I---------DVCRVLRADSGVPIVXLTAKTDTVDVVLG-LESGADDYIXKPFKPKE 111
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
R+L+V+ + + R+++ L++ GY + +G A + K + DLV+ ++E+P ISG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154
+ + + K+ +I+++ + L A ++++K +EL+
Sbjct: 61 LEVAGEIRKKK--KDAKIILLTAYSHYRSDLSSW--AADEYVVKSFNFDELK 108
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 43 RVLLVEADDSTRQIISALL--RKCGYRVAAVPDGLAAWETLK--------CRPHSIDLVL 92
++ LVE + + ++I L + V V DG+ A L+ RP DL+L
Sbjct: 4 KIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRP---DLIL 60
Query: 93 TEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124
+ LP G +L + K IPV+++S
Sbjct: 61 LXLNLPKKDGREVLAEIKSDPTLKRIPVVVLS 92
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++ +V+ D + + +S L++ G RV G E + +V+ +V LP SG
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTG----EDFLNDEEAFHVVVLDVXLPDYSG 58
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ + + E VI+++L VLK GA D++ KP
Sbjct: 59 YEICRXIKETR--PETWVILLTLLSDDESVLKGFEAGADDYVTKP 101
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++ +V+ D + + +S L++ G RV G E + +V+ +V LP SG
Sbjct: 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTG----EDFLNDEEAFHVVVLDVXLPDYSG 58
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147
+ + + E VI+++L VLK GA D++ KP
Sbjct: 59 YEICRXIKETR--PETWVILLTLLSDDESVLKGFEAGADDYVTKP 101
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
+VL+VE + R+ + LL + DG + + + H D+++++V G
Sbjct: 6 KVLIVENSWTXRETLRLLLSG-EFDCTTAADGASGLQ--QALAHPPDVLISDVNXDGXDG 62
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD------FLIKPVR 149
+AL K+IPVI +S + + +G AD +L+KPV+
Sbjct: 63 YALCGHFRSEPTLKHIPVIFVSGYAPRT-------EGPADQPVPDAYLVKPVK 108
>pdb|3B1F|A Chain A, Crystal Structure Of Prephenate Dehydrogenase From
Streptococcus Mutans
Length = 290
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 444 GSSKSDEILSN-QLSENATGGFQPCCATSSNSRENMTSLVMGQSEQAAVAFAGPHLGFIP 502
GS KS + +N L ENA F P C T N+ + L+ +G H ++
Sbjct: 130 GSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLL-----------SGLHARYVE 178
Query: 503 VPGVRFDNIFAGYSHIFPSIFYTKSGLQPAWSPNSSHQKEHH 544
+ D + + SH FP I S + A + SH+ H
Sbjct: 179 IDAAEHDCVTSQISH-FPHII-ASSLXKQAGDFSESHEXTKH 218
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 44 VLLVEADDSTRQIISALLRK--CGYRVAAVPDGLAAWETLK--------CRPHSIDLVLT 93
+LLVE + +++ +L+ + + + DGLAA L+ RP +L+L
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRP---NLILL 67
Query: 94 EVELPSISGFALLTLVMEHDVCKNIPVIMMS 124
++ LP G +L + ++ K IPV++++
Sbjct: 68 DLNLPKKDGREVLAEIKQNPDLKRIPVVVLT 98
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG 102
++L+++ D Q + L + G + + A K + DL+ E+ L G
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEA--IGKIFSNKYDLIFLEIILSDGDG 63
Query: 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162
+ L + C P++ + + +L + G D+LIKP+ L + + R
Sbjct: 64 WTLCKKIRNVTTC---PIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120
Query: 163 R 163
R
Sbjct: 121 R 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,119,321
Number of Sequences: 62578
Number of extensions: 861668
Number of successful extensions: 1458
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 150
length of query: 720
length of database: 14,973,337
effective HSP length: 106
effective length of query: 614
effective length of database: 8,340,069
effective search space: 5120802366
effective search space used: 5120802366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)