Query 042954
Match_columns 720
No_of_seqs 458 out of 2369
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3437 Response regulator con 100.0 1.5E-33 3.2E-38 299.2 15.5 225 40-291 13-244 (360)
2 COG2204 AtoC Response regulato 99.9 8.6E-23 1.9E-27 227.0 16.9 186 40-229 3-201 (464)
3 COG0745 OmpR Response regulato 99.9 1E-20 2.3E-25 195.1 17.2 121 42-166 1-121 (229)
4 COG4753 Response regulator con 99.8 5.4E-20 1.2E-24 204.5 14.6 119 41-163 1-122 (475)
5 COG4566 TtrR Response regulato 99.8 6E-19 1.3E-23 173.5 13.8 121 41-165 4-124 (202)
6 COG2197 CitB Response regulato 99.8 4.2E-18 9.2E-23 173.6 19.6 130 42-175 1-132 (211)
7 PRK11466 hybrid sensory histid 99.8 8.7E-18 1.9E-22 203.1 24.1 161 1-166 639-803 (914)
8 COG4565 CitB Response regulato 99.8 1.1E-17 2.4E-22 167.5 17.9 122 42-167 1-124 (224)
9 PF00072 Response_reg: Respons 99.8 1.4E-17 3.1E-22 149.2 16.2 111 44-158 1-112 (112)
10 PRK15347 two component system 99.7 2.7E-16 5.9E-21 189.9 25.9 121 41-163 690-812 (921)
11 PF06203 CCT: CCT motif; Inte 99.7 8.5E-19 1.8E-23 134.5 2.6 45 664-708 1-45 (45)
12 PRK11091 aerobic respiration c 99.7 1.2E-16 2.5E-21 190.6 20.2 160 1-164 482-646 (779)
13 TIGR02956 TMAO_torS TMAO reduc 99.7 1.4E-16 3E-21 193.5 20.9 160 1-164 660-824 (968)
14 PRK10046 dpiA two-component re 99.7 5.2E-16 1.1E-20 158.3 20.6 123 41-167 4-128 (225)
15 PRK09959 hybrid sensory histid 99.7 5.1E-16 1.1E-20 193.2 20.3 160 1-164 913-1077(1197)
16 PRK10841 hybrid sensory kinase 99.7 8.8E-16 1.9E-20 186.8 21.2 120 41-164 801-920 (924)
17 PRK11107 hybrid sensory histid 99.7 9.5E-16 2.1E-20 184.9 20.6 123 41-165 667-789 (919)
18 COG0784 CheY FOG: CheY-like re 99.7 1.4E-15 3.1E-20 139.5 17.0 119 41-162 5-125 (130)
19 PLN03029 type-a response regul 99.7 1.3E-15 2.9E-20 156.2 16.7 124 41-164 8-149 (222)
20 PRK10161 transcriptional regul 99.6 5.7E-15 1.2E-19 148.6 17.7 123 40-164 1-123 (229)
21 PRK10816 DNA-binding transcrip 99.6 5.3E-15 1.1E-19 148.2 17.4 119 42-164 1-119 (223)
22 COG3706 PleD Response regulato 99.6 2E-15 4.4E-20 167.3 15.7 124 41-166 132-255 (435)
23 TIGR02154 PhoB phosphate regul 99.6 5.7E-15 1.2E-19 146.7 17.4 124 40-165 1-124 (226)
24 PRK09483 response regulator; P 99.6 1.3E-14 2.8E-19 144.2 20.0 124 41-168 1-126 (217)
25 PRK10529 DNA-binding transcrip 99.6 6.2E-15 1.3E-19 147.6 17.5 120 41-165 1-120 (225)
26 PRK10430 DNA-binding transcrip 99.6 7E-15 1.5E-19 151.2 17.2 122 41-164 1-124 (239)
27 PRK10766 DNA-binding transcrip 99.6 8.8E-15 1.9E-19 146.1 17.3 121 40-165 1-121 (221)
28 PRK10840 transcriptional regul 99.6 1.6E-14 3.5E-19 145.8 19.3 123 42-168 4-131 (216)
29 PRK10643 DNA-binding transcrip 99.6 1E-14 2.2E-19 144.8 17.6 120 42-165 1-120 (222)
30 PRK09836 DNA-binding transcrip 99.6 9.6E-15 2.1E-19 146.7 17.6 118 43-164 2-119 (227)
31 COG4567 Response regulator con 99.6 3.6E-15 7.8E-20 141.9 12.7 113 43-159 11-123 (182)
32 PRK10955 DNA-binding transcrip 99.6 1.5E-14 3.3E-19 145.0 17.4 120 41-166 1-120 (232)
33 PRK11083 DNA-binding response 99.6 1.8E-14 4E-19 143.5 17.5 121 41-165 3-123 (228)
34 PRK11173 two-component respons 99.6 1.7E-14 3.6E-19 146.6 17.2 118 42-164 4-121 (237)
35 PRK10336 DNA-binding transcrip 99.6 1.9E-14 4E-19 142.8 17.2 119 42-164 1-119 (219)
36 PRK13837 two-component VirA-li 99.6 2.7E-14 5.8E-19 172.1 20.6 160 1-165 652-816 (828)
37 PRK15115 response regulator Gl 99.6 1.5E-14 3.2E-19 162.0 16.9 185 41-229 5-194 (444)
38 PRK09468 ompR osmolarity respo 99.6 3.1E-14 6.8E-19 144.3 17.7 121 41-165 5-125 (239)
39 PRK10701 DNA-binding transcrip 99.6 2.8E-14 6.2E-19 145.0 17.4 120 41-165 1-120 (240)
40 TIGR03787 marine_sort_RR prote 99.6 3.3E-14 7.3E-19 142.5 17.4 120 43-166 2-123 (227)
41 PRK13856 two-component respons 99.6 3.6E-14 7.8E-19 144.9 17.3 119 42-165 2-121 (241)
42 COG3947 Response regulator con 99.6 4.6E-15 1E-19 154.1 10.6 118 42-165 1-118 (361)
43 PRK10923 glnG nitrogen regulat 99.6 2.9E-14 6.2E-19 160.9 17.6 119 42-164 4-122 (469)
44 PRK10365 transcriptional regul 99.6 2.1E-14 4.5E-19 160.3 15.8 120 41-164 5-124 (441)
45 PRK11517 transcriptional regul 99.6 7.9E-14 1.7E-18 139.0 17.5 119 42-165 1-119 (223)
46 CHL00148 orf27 Ycf27; Reviewed 99.6 8.9E-14 1.9E-18 140.2 17.9 120 41-165 6-125 (240)
47 PRK13557 histidine kinase; Pro 99.6 9.2E-14 2E-18 156.6 19.8 158 2-164 372-536 (540)
48 PRK09958 DNA-binding transcrip 99.6 7.7E-14 1.7E-18 137.4 16.9 121 42-166 1-122 (204)
49 TIGR02915 PEP_resp_reg putativ 99.6 3.4E-14 7.3E-19 159.2 15.8 115 44-164 1-120 (445)
50 TIGR01387 cztR_silR_copR heavy 99.6 1.1E-13 2.3E-18 137.0 17.2 119 44-166 1-119 (218)
51 PRK11361 acetoacetate metaboli 99.6 5.9E-14 1.3E-18 157.5 16.5 121 41-165 4-124 (457)
52 KOG0519 Sensory transduction h 99.5 2.7E-14 5.8E-19 170.6 14.3 121 40-162 665-785 (786)
53 TIGR02875 spore_0_A sporulatio 99.5 1.5E-13 3.3E-18 142.7 17.0 121 41-163 2-124 (262)
54 PRK09581 pleD response regulat 99.5 3.4E-14 7.4E-19 156.7 12.7 121 40-163 154-274 (457)
55 PRK14084 two-component respons 99.5 2.6E-13 5.6E-18 139.2 16.6 117 42-164 1-119 (246)
56 PRK10360 DNA-binding transcrip 99.5 3.2E-13 6.9E-18 132.2 16.1 119 41-166 1-121 (196)
57 PRK09935 transcriptional regul 99.5 4.9E-13 1.1E-17 131.5 17.0 121 42-166 4-126 (210)
58 PRK11697 putative two-componen 99.5 4.9E-13 1.1E-17 136.1 15.9 116 41-163 1-118 (238)
59 PRK15479 transcriptional regul 99.5 9E-13 1.9E-17 130.7 17.3 121 42-166 1-121 (221)
60 PRK09581 pleD response regulat 99.5 7.2E-13 1.6E-17 146.3 17.7 124 40-165 1-124 (457)
61 TIGR01818 ntrC nitrogen regula 99.5 6.7E-13 1.5E-17 149.4 16.2 117 44-164 1-117 (463)
62 PRK10710 DNA-binding transcrip 99.5 1.8E-12 4E-17 130.6 17.7 119 42-165 11-129 (240)
63 PRK10403 transcriptional regul 99.5 4.3E-12 9.4E-17 124.5 19.2 123 40-166 5-129 (215)
64 PRK10100 DNA-binding transcrip 99.5 6.1E-13 1.3E-17 136.3 13.5 121 41-170 10-134 (216)
65 PRK13435 response regulator; P 99.4 2.3E-12 5E-17 121.4 15.6 121 38-166 2-124 (145)
66 PRK10651 transcriptional regul 99.4 7.3E-12 1.6E-16 123.3 19.7 122 41-166 6-129 (216)
67 PRK09390 fixJ response regulat 99.4 1.7E-12 3.7E-17 125.6 14.7 119 42-164 4-122 (202)
68 PRK10610 chemotaxis regulatory 99.4 8.6E-12 1.9E-16 110.1 17.5 121 41-163 5-126 (129)
69 PRK12555 chemotaxis-specific m 99.4 1.9E-12 4.1E-17 140.5 16.0 117 42-163 1-130 (337)
70 PRK11475 DNA-binding transcrip 99.4 1.5E-12 3.3E-17 132.6 13.8 111 54-168 3-120 (207)
71 PRK15411 rcsA colanic acid cap 99.4 5.9E-12 1.3E-16 128.1 17.7 122 42-168 1-128 (207)
72 PRK00742 chemotaxis-specific m 99.4 3.6E-12 7.7E-17 139.2 16.6 118 40-162 2-132 (354)
73 PRK15369 two component system 99.4 6.8E-12 1.5E-16 122.0 16.8 122 41-166 3-126 (211)
74 PRK13558 bacterio-opsin activa 99.4 3.1E-12 6.7E-17 150.2 14.7 118 42-163 8-127 (665)
75 COG2201 CheB Chemotaxis respon 99.4 8.7E-12 1.9E-16 134.9 15.2 104 41-149 1-108 (350)
76 COG3707 AmiR Response regulato 99.3 4.5E-11 9.8E-16 118.8 12.1 124 38-166 2-126 (194)
77 PRK09191 two-component respons 99.2 1.4E-10 3E-15 119.8 16.1 118 40-164 136-255 (261)
78 cd00156 REC Signal receiver do 99.2 2.2E-10 4.8E-15 96.1 13.2 112 45-160 1-112 (113)
79 PRK10693 response regulator of 99.1 4.2E-10 9E-15 120.9 12.7 90 70-163 2-92 (303)
80 PRK15029 arginine decarboxylas 99.1 6.7E-10 1.5E-14 131.6 13.7 118 43-164 2-134 (755)
81 COG3279 LytT Response regulato 99.1 7.5E-10 1.6E-14 115.7 11.1 117 41-163 1-119 (244)
82 COG2206 c-di-GMP phosphodieste 98.8 2.5E-09 5.4E-14 117.1 3.8 63 212-289 142-205 (344)
83 PRK11107 hybrid sensory histid 98.3 8.6E-06 1.9E-10 99.0 14.5 152 1-161 495-650 (919)
84 PRK10618 phosphotransfer inter 98.2 3.6E-06 7.7E-11 102.9 8.1 85 1-97 649-737 (894)
85 PRK12704 phosphodiesterase; Pr 98.1 5.5E-06 1.2E-10 95.5 8.2 120 119-274 251-373 (520)
86 COG3706 PleD Response regulato 97.9 9.6E-06 2.1E-10 91.0 5.3 94 66-165 13-106 (435)
87 PF06490 FleQ: Flagellar regul 97.5 0.0007 1.5E-08 62.5 10.0 107 43-160 1-107 (109)
88 smart00448 REC cheY-homologous 97.4 0.0009 1.9E-08 48.3 8.1 55 42-98 1-55 (55)
89 PF03709 OKR_DC_1_N: Orn/Lys/A 96.9 0.0095 2.1E-07 55.4 10.5 106 54-163 6-114 (115)
90 cd02071 MM_CoA_mut_B12_BD meth 96.8 0.041 8.9E-07 51.5 14.1 112 43-158 1-121 (122)
91 PRK02261 methylaspartate mutas 96.5 0.1 2.2E-06 50.2 14.7 117 42-162 4-135 (137)
92 TIGR00277 HDIG uncharacterized 96.3 0.003 6.6E-08 53.1 3.0 43 227-279 5-47 (80)
93 PRK12703 tRNA 2'-O-methylase; 96.0 0.11 2.4E-06 57.2 13.9 190 42-277 31-228 (339)
94 TIGR00295 conserved hypothetic 96.0 0.0067 1.5E-07 59.9 4.0 46 228-278 15-60 (164)
95 TIGR00640 acid_CoA_mut_C methy 95.8 0.26 5.7E-06 47.1 13.8 110 48-161 13-127 (132)
96 PF01966 HD: HD domain; Inter 95.8 0.0041 8.9E-08 56.0 1.4 46 228-281 2-47 (122)
97 cd02067 B12-binding B12 bindin 95.7 0.13 2.8E-06 47.5 11.0 93 48-145 10-108 (119)
98 PF09425 CCT_2: Divergent CCT 95.5 0.0077 1.7E-07 41.8 1.5 25 662-687 2-26 (27)
99 PRK07152 nadD putative nicotin 95.2 0.009 2E-07 65.7 1.8 45 227-281 197-241 (342)
100 PRK15399 lysine decarboxylase 94.7 0.27 5.8E-06 59.1 12.3 117 42-164 1-124 (713)
101 TIGR00488 putative HD superfam 94.5 0.015 3.2E-07 56.9 1.2 43 228-280 10-52 (158)
102 KOG1601 GATA-4/5/6 transcripti 94.2 0.017 3.8E-07 59.6 1.0 42 660-701 289-330 (340)
103 TIGR01501 MthylAspMutase methy 94.1 1.4 3E-05 42.5 13.6 111 48-162 12-133 (134)
104 PRK15400 lysine decarboxylase 94.1 0.37 8E-06 58.0 11.7 117 42-164 1-124 (714)
105 cd00077 HDc Metal dependent ph 93.6 0.07 1.5E-06 48.1 3.7 45 227-278 3-47 (145)
106 PRK00106 hypothetical protein; 93.5 0.089 1.9E-06 61.2 5.1 43 227-280 351-393 (535)
107 TIGR03815 CpaE_hom_Actino heli 93.2 0.27 5.9E-06 53.4 8.0 84 65-160 1-85 (322)
108 COG1418 Predicted HD superfami 92.9 0.067 1.5E-06 55.6 2.6 40 227-276 37-76 (222)
109 smart00471 HDc Metal dependent 91.9 0.15 3.1E-06 45.2 3.2 46 227-281 5-50 (124)
110 cd02070 corrinoid_protein_B12- 91.9 2.4 5.2E-05 43.1 12.4 100 41-145 82-190 (201)
111 TIGR03319 YmdA_YtgF conserved 91.9 0.1 2.2E-06 60.7 2.7 39 227-275 330-368 (514)
112 PRK12705 hypothetical protein; 90.5 0.15 3.3E-06 58.9 2.4 37 228-274 325-361 (508)
113 cd02072 Glm_B12_BD B12 binding 90.4 5.9 0.00013 37.9 12.5 106 49-158 11-127 (128)
114 cd02069 methionine_synthase_B1 90.2 2.6 5.7E-05 43.6 10.9 101 41-145 88-200 (213)
115 cd04728 ThiG Thiazole synthase 90.0 2.5 5.3E-05 44.7 10.5 113 42-165 94-228 (248)
116 PF02310 B12-binding: B12 bind 89.6 3.9 8.5E-05 37.3 10.6 93 49-146 12-111 (121)
117 cd02068 radical_SAM_B12_BD B12 89.4 4 8.7E-05 38.1 10.6 108 52-163 3-113 (127)
118 PRK00043 thiE thiamine-phospha 89.1 6.7 0.00015 39.5 12.8 85 71-161 111-208 (212)
119 PRK00208 thiG thiazole synthas 89.0 6.8 0.00015 41.5 12.9 113 42-165 94-228 (250)
120 TIGR03401 cyanamide_fam HD dom 88.5 0.26 5.7E-06 51.4 2.1 40 226-274 55-97 (228)
121 COG4999 Uncharacterized domain 88.4 1.6 3.5E-05 41.2 6.9 105 42-157 12-121 (140)
122 TIGR02370 pyl_corrinoid methyl 88.2 4.4 9.6E-05 41.2 10.7 99 42-145 85-192 (197)
123 PRK01130 N-acetylmannosamine-6 88.0 9.7 0.00021 39.1 13.3 86 56-147 109-203 (221)
124 COG2185 Sbm Methylmalonyl-CoA 87.8 7.6 0.00017 37.9 11.4 118 41-162 12-138 (143)
125 COG1713 Predicted HD superfami 85.7 0.39 8.5E-06 48.6 1.4 44 228-281 19-62 (187)
126 PRK09426 methylmalonyl-CoA mut 85.0 11 0.00023 46.0 13.2 117 42-162 583-708 (714)
127 TIGR02026 BchE magnesium-proto 84.9 9.9 0.00021 44.1 12.6 109 50-163 21-138 (497)
128 PF10087 DUF2325: Uncharacteri 84.1 10 0.00022 34.0 9.7 90 43-136 1-93 (97)
129 PF01408 GFO_IDH_MocA: Oxidore 83.8 18 0.0004 32.7 11.6 108 42-164 1-113 (120)
130 TIGR01596 cas3_HD CRISPR-assoc 83.6 1.3 2.8E-05 43.2 4.1 40 228-276 2-48 (177)
131 PRK03958 tRNA 2'-O-methylase; 83.2 9.6 0.00021 38.4 9.9 78 42-125 32-111 (176)
132 COG0512 PabA Anthranilate/para 82.1 3.4 7.3E-05 42.1 6.4 77 41-124 1-81 (191)
133 PRK10119 putative hydrolase; P 82.1 0.98 2.1E-05 47.3 2.7 37 227-273 26-62 (231)
134 CHL00162 thiG thiamin biosynth 82.1 34 0.00075 36.5 13.9 101 58-165 130-242 (267)
135 PRK13480 3'-5' exoribonuclease 81.0 0.92 2E-05 49.6 2.1 43 223-274 156-198 (314)
136 PF03602 Cons_hypoth95: Conser 80.5 8.9 0.00019 38.7 8.8 88 36-123 60-151 (183)
137 PF07688 KaiA: KaiA domain; I 79.5 11 0.00024 40.1 9.2 115 43-165 2-121 (283)
138 PRK00278 trpC indole-3-glycero 77.9 50 0.0011 35.1 13.9 90 51-146 146-240 (260)
139 cd02065 B12-binding_like B12 b 77.7 14 0.0003 33.7 8.6 76 48-127 10-90 (125)
140 cd04729 NanE N-acetylmannosami 77.0 29 0.00063 35.6 11.5 75 66-146 124-206 (219)
141 PF05690 ThiG: Thiazole biosyn 76.2 24 0.00053 37.2 10.6 116 42-164 94-227 (247)
142 PRK10558 alpha-dehydro-beta-de 74.2 32 0.00069 36.6 11.2 103 55-160 8-113 (256)
143 TIGR03760 ICE_TraI_Pfluor inte 73.9 2.4 5.2E-05 44.1 2.7 52 223-275 64-121 (218)
144 TIGR00693 thiE thiamine-phosph 73.5 23 0.0005 35.3 9.6 70 70-145 102-179 (196)
145 TIGR02621 cas3_GSU0051 CRISPR- 73.4 3.1 6.6E-05 51.2 3.8 42 226-275 675-716 (844)
146 cd00452 KDPG_aldolase KDPG and 73.2 28 0.0006 35.0 10.1 76 64-147 96-172 (190)
147 PF02254 TrkA_N: TrkA-N domain 73.1 42 0.0009 30.2 10.4 93 41-144 21-114 (116)
148 TIGR03239 GarL 2-dehydro-3-deo 73.1 39 0.00085 35.8 11.5 101 57-160 3-106 (249)
149 PRK05718 keto-hydroxyglutarate 72.5 36 0.00077 35.3 10.8 93 57-156 8-103 (212)
150 PF08668 HDOD: HDOD domain; I 71.6 2.1 4.5E-05 42.7 1.5 46 222-276 90-135 (196)
151 PRK10128 2-keto-3-deoxy-L-rham 71.5 43 0.00093 36.0 11.5 102 56-160 8-112 (267)
152 PRK13111 trpA tryptophan synth 71.2 14 0.0003 39.4 7.7 59 102-162 76-140 (258)
153 PRK15424 propionate catabolism 70.2 16 0.00034 43.1 8.5 38 192-229 241-287 (538)
154 cd00564 TMP_TenI Thiamine mono 69.5 38 0.00083 33.1 10.0 70 71-147 102-179 (196)
155 TIGR01334 modD putative molybd 69.2 20 0.00043 38.8 8.3 95 43-144 158-261 (277)
156 TIGR00095 RNA methyltransferas 69.2 49 0.0011 33.4 10.8 87 41-127 72-161 (189)
157 TIGR03151 enACPred_II putative 68.9 47 0.001 36.3 11.3 85 57-147 101-191 (307)
158 TIGR02311 HpaI 2,4-dihydroxyhe 68.2 60 0.0013 34.4 11.7 101 57-160 3-106 (249)
159 cd00331 IGPS Indole-3-glycerol 68.0 66 0.0014 32.8 11.7 81 62-146 118-201 (217)
160 KOG2550 IMP dehydrogenase/GMP 67.4 9.2 0.0002 43.2 5.4 98 42-144 203-318 (503)
161 TIGR00262 trpA tryptophan synt 66.9 22 0.00047 37.9 8.0 60 101-162 73-138 (256)
162 TIGR00566 trpG_papA glutamine 66.1 15 0.00033 36.9 6.4 76 44-124 2-79 (188)
163 cd04724 Tryptophan_synthase_al 65.8 24 0.00053 37.0 8.1 60 101-163 63-128 (242)
164 PRK04302 triosephosphate isome 65.5 1.2E+02 0.0026 31.2 13.1 81 62-147 111-203 (223)
165 cd04726 KGPDC_HPS 3-Keto-L-gul 65.2 1.1E+02 0.0024 30.4 12.6 99 41-146 77-186 (202)
166 TIGR00007 phosphoribosylformim 64.8 79 0.0017 32.4 11.6 68 73-145 146-217 (230)
167 PRK07896 nicotinate-nucleotide 64.6 32 0.0007 37.4 8.9 95 43-144 172-272 (289)
168 PRK13125 trpA tryptophan synth 64.4 75 0.0016 33.3 11.4 90 53-147 117-215 (244)
169 cd04727 pdxS PdxS is a subunit 64.0 1E+02 0.0022 33.5 12.3 88 71-164 119-248 (283)
170 COG2022 ThiG Uncharacterized e 63.8 75 0.0016 33.7 10.9 114 42-162 101-232 (262)
171 PRK05458 guanosine 5'-monophos 63.7 24 0.00053 39.0 7.9 67 74-144 99-166 (326)
172 TIGR00308 TRM1 tRNA(guanine-26 63.3 1E+02 0.0022 34.8 12.8 93 42-142 70-169 (374)
173 PRK05703 flhF flagellar biosyn 62.5 67 0.0015 36.7 11.4 94 41-135 251-350 (424)
174 TIGR01182 eda Entner-Doudoroff 62.4 52 0.0011 34.0 9.6 91 60-156 4-96 (204)
175 COG0742 N6-adenine-specific me 62.3 42 0.00091 34.3 8.7 59 36-95 61-122 (187)
176 PF09936 Methyltrn_RNA_4: SAM- 62.0 44 0.00095 34.0 8.6 100 42-149 43-161 (185)
177 PRK05637 anthranilate synthase 61.9 25 0.00054 36.2 7.2 78 41-124 1-80 (208)
178 TIGR00343 pyridoxal 5'-phospha 61.9 59 0.0013 35.3 10.1 61 101-164 184-251 (287)
179 TIGR01761 thiaz-red thiazoliny 61.4 44 0.00095 37.2 9.4 103 42-164 4-115 (343)
180 PRK07428 nicotinate-nucleotide 61.3 43 0.00094 36.4 9.2 96 43-145 168-270 (288)
181 PRK06552 keto-hydroxyglutarate 61.1 72 0.0016 33.0 10.4 94 59-156 8-104 (213)
182 COG0673 MviM Predicted dehydro 60.8 99 0.0021 33.2 12.0 110 40-163 2-117 (342)
183 PRK03708 ppnK inorganic polyph 60.7 69 0.0015 34.5 10.6 103 42-165 1-114 (277)
184 PRK09140 2-dehydro-3-deoxy-6-p 60.7 61 0.0013 33.3 9.8 96 59-158 5-101 (206)
185 cd04730 NPD_like 2-Nitropropan 60.7 1.2E+02 0.0026 31.1 12.0 97 42-146 81-185 (236)
186 TIGR00736 nifR3_rel_arch TIM-b 60.6 81 0.0018 33.2 10.8 95 46-145 116-219 (231)
187 PRK11031 guanosine pentaphosph 60.4 7.1 0.00015 45.4 3.2 45 225-275 321-368 (496)
188 cd01948 EAL EAL domain. This d 60.2 30 0.00064 34.9 7.4 90 57-149 137-237 (240)
189 PRK07695 transcriptional regul 59.6 2E+02 0.0043 29.0 13.6 67 71-144 102-175 (201)
190 TIGR01037 pyrD_sub1_fam dihydr 59.0 1.2E+02 0.0026 32.5 12.2 61 103-166 223-289 (300)
191 PLN02591 tryptophan synthase 58.9 32 0.0007 36.6 7.5 60 101-163 65-130 (250)
192 PRK08385 nicotinate-nucleotide 58.9 95 0.0021 33.6 11.2 97 43-145 156-258 (278)
193 PRK07649 para-aminobenzoate/an 58.4 12 0.00026 38.0 4.1 49 44-94 2-50 (195)
194 PRK12724 flagellar biosynthesi 58.1 1.2E+02 0.0025 35.1 12.1 103 40-144 251-365 (432)
195 PRK11889 flhF flagellar biosyn 57.6 1E+02 0.0022 35.4 11.5 103 41-145 269-384 (436)
196 PRK05581 ribulose-phosphate 3- 56.9 75 0.0016 32.2 9.7 85 59-146 103-198 (220)
197 TIGR02082 metH 5-methyltetrahy 56.9 78 0.0017 41.0 11.6 101 41-145 732-844 (1178)
198 PRK05458 guanosine 5'-monophos 56.5 1.8E+02 0.0038 32.3 13.0 98 43-146 113-230 (326)
199 PLN02871 UDP-sulfoquinovose:DA 56.3 1.1E+02 0.0024 34.8 11.9 107 41-162 290-399 (465)
200 PRK09490 metH B12-dependent me 56.0 85 0.0018 40.7 11.7 101 41-145 751-863 (1229)
201 PRK11840 bifunctional sulfur c 55.8 1.5E+02 0.0033 32.9 12.1 117 42-165 168-302 (326)
202 PRK01911 ppnK inorganic polyph 55.7 65 0.0014 35.0 9.4 103 43-165 2-122 (292)
203 PRK14974 cell division protein 55.5 1.3E+02 0.0028 33.4 11.9 102 40-145 167-286 (336)
204 KOG4175 Tryptophan synthase al 55.2 38 0.00082 35.0 6.9 51 104-156 84-140 (268)
205 PRK05749 3-deoxy-D-manno-octul 55.0 1E+02 0.0022 34.5 11.2 110 42-162 263-387 (425)
206 PLN02935 Bifunctional NADH kin 54.9 1.3E+02 0.0027 35.4 11.9 117 25-165 182-320 (508)
207 PLN02274 inosine-5'-monophosph 54.8 1.7E+02 0.0037 34.4 13.2 101 41-147 260-381 (505)
208 CHL00200 trpA tryptophan synth 54.3 41 0.00088 36.0 7.4 59 101-162 78-142 (263)
209 PRK00811 spermidine synthase; 54.3 67 0.0015 34.5 9.2 69 42-113 101-181 (283)
210 PF03060 NMO: Nitronate monoox 54.2 1.1E+02 0.0024 33.6 11.0 83 58-146 129-219 (330)
211 PRK11359 cyclic-di-GMP phospho 54.2 1.2E+02 0.0027 36.5 12.5 101 56-159 682-793 (799)
212 PRK01231 ppnK inorganic polyph 53.7 1.4E+02 0.0031 32.5 11.6 104 42-165 5-120 (295)
213 cd00429 RPE Ribulose-5-phospha 53.7 53 0.0011 32.8 7.9 58 88-146 128-194 (211)
214 cd01573 modD_like ModD; Quinol 53.6 78 0.0017 34.1 9.5 96 43-145 154-257 (272)
215 PRK06015 keto-hydroxyglutarate 53.5 74 0.0016 32.8 8.9 59 93-155 33-91 (201)
216 PRK05567 inosine 5'-monophosph 53.5 1.7E+02 0.0037 34.0 13.0 103 41-147 240-361 (486)
217 smart00052 EAL Putative diguan 53.4 59 0.0013 32.7 8.3 91 56-149 137-238 (241)
218 PRK01372 ddl D-alanine--D-alan 53.4 25 0.00054 37.5 5.8 55 38-94 1-63 (304)
219 PRK05848 nicotinate-nucleotide 53.0 1E+02 0.0022 33.3 10.2 94 43-145 154-256 (273)
220 cd03813 GT1_like_3 This family 52.9 1.1E+02 0.0023 35.2 11.1 106 42-162 325-441 (475)
221 TIGR03088 stp2 sugar transfera 52.8 89 0.0019 33.8 10.1 106 42-162 230-337 (374)
222 cd04723 HisA_HisF Phosphoribos 52.7 65 0.0014 33.6 8.6 68 74-146 148-218 (233)
223 PRK06895 putative anthranilate 52.6 39 0.00084 33.9 6.7 76 42-124 2-79 (190)
224 COG2200 Rtn c-di-GMP phosphodi 52.4 1.3E+02 0.0029 31.7 10.9 116 41-159 121-251 (256)
225 KOG1562 Spermidine synthase [A 52.2 45 0.00098 36.5 7.3 64 42-107 146-215 (337)
226 COG1078 HD superfamily phospho 52.1 14 0.0003 42.3 3.6 52 228-280 53-104 (421)
227 TIGR00262 trpA tryptophan synt 52.0 1.4E+02 0.0031 31.7 11.1 103 42-147 116-228 (256)
228 PRK06096 molybdenum transport 51.9 47 0.001 36.0 7.5 96 43-145 159-263 (284)
229 cd03823 GT1_ExpE7_like This fa 51.7 1.3E+02 0.0028 31.3 10.7 75 75-162 254-328 (359)
230 PLN02823 spermine synthase 51.5 57 0.0012 36.2 8.3 68 42-112 128-209 (336)
231 PF04131 NanE: Putative N-acet 51.4 2.2E+02 0.0048 29.3 11.6 70 71-147 99-174 (192)
232 PRK01395 V-type ATP synthase s 51.1 1E+02 0.0022 28.5 8.5 53 40-97 2-55 (104)
233 PRK10742 putative methyltransf 50.9 78 0.0017 33.8 8.7 97 41-146 110-218 (250)
234 PF01596 Methyltransf_3: O-met 50.9 54 0.0012 33.7 7.5 77 32-111 62-143 (205)
235 PRK15484 lipopolysaccharide 1, 50.4 2E+02 0.0044 31.7 12.6 108 42-162 225-343 (380)
236 PRK00994 F420-dependent methyl 50.4 1.1E+02 0.0024 32.5 9.5 79 65-149 31-118 (277)
237 cd04722 TIM_phosphate_binding 50.4 98 0.0021 29.7 9.0 56 87-145 136-198 (200)
238 PRK06774 para-aminobenzoate sy 50.4 20 0.00044 35.9 4.2 49 44-94 2-50 (191)
239 PRK14098 glycogen synthase; Pr 50.3 1.6E+02 0.0034 34.2 12.0 112 42-163 337-451 (489)
240 COG3836 HpcH 2,4-dihydroxyhept 50.0 1.5E+02 0.0033 31.5 10.4 100 56-158 7-109 (255)
241 PRK01362 putative translaldola 50.0 77 0.0017 33.0 8.4 85 59-147 95-185 (214)
242 PRK03562 glutathione-regulated 50.0 78 0.0017 38.0 9.7 96 38-144 420-516 (621)
243 KOG3040 Predicted sugar phosph 50.0 40 0.00088 35.1 6.2 97 40-164 38-138 (262)
244 PRK06843 inosine 5-monophospha 49.9 1.9E+02 0.0041 33.1 12.1 103 41-146 165-285 (404)
245 COG0159 TrpA Tryptophan syntha 49.8 54 0.0012 35.3 7.4 56 102-159 81-142 (265)
246 PRK02155 ppnK NAD(+)/NADH kina 49.7 1.8E+02 0.0038 31.6 11.5 103 43-165 7-121 (291)
247 PRK03378 ppnK inorganic polyph 49.5 85 0.0018 34.1 9.1 105 41-165 5-121 (292)
248 PLN02335 anthranilate synthase 49.4 39 0.00084 35.1 6.2 79 41-124 18-98 (222)
249 TIGR01163 rpe ribulose-phospha 49.2 79 0.0017 31.6 8.3 87 56-146 95-193 (210)
250 cd06338 PBP1_ABC_ligand_bindin 49.2 1.7E+02 0.0037 31.3 11.4 77 43-125 143-230 (345)
251 TIGR00735 hisF imidazoleglycer 49.1 1.5E+02 0.0033 31.1 10.8 78 75-158 158-247 (254)
252 PF01729 QRPTase_C: Quinolinat 49.1 68 0.0015 32.1 7.6 96 43-145 52-154 (169)
253 cd04962 GT1_like_5 This family 49.1 1E+02 0.0022 32.9 9.7 106 42-162 228-335 (371)
254 PRK13566 anthranilate synthase 49.1 36 0.00077 41.6 6.7 79 39-124 524-605 (720)
255 PLN02775 Probable dihydrodipic 48.9 3.9E+02 0.0085 29.2 13.9 104 40-150 10-138 (286)
256 PRK00748 1-(5-phosphoribosyl)- 48.6 87 0.0019 32.1 8.7 67 74-145 148-219 (233)
257 PRK06843 inosine 5-monophospha 48.5 78 0.0017 36.1 8.8 63 76-144 157-220 (404)
258 PRK07114 keto-hydroxyglutarate 48.4 1.4E+02 0.0031 31.2 10.2 93 59-154 10-105 (222)
259 KOG1601 GATA-4/5/6 transcripti 48.4 2.1 4.5E-05 44.1 -3.3 107 45-153 19-129 (340)
260 PF03102 NeuB: NeuB family; I 48.4 66 0.0014 34.1 7.8 84 52-143 56-143 (241)
261 PTZ00314 inosine-5'-monophosph 47.9 1.7E+02 0.0036 34.3 11.7 101 41-147 253-374 (495)
262 TIGR03704 PrmC_rel_meth putati 47.8 2.7E+02 0.0058 29.3 12.3 92 42-136 111-228 (251)
263 PRK07259 dihydroorotate dehydr 47.7 1.8E+02 0.004 31.2 11.3 59 103-164 223-287 (301)
264 cd01424 MGS_CPS_II Methylglyox 47.3 1.8E+02 0.0039 26.3 9.7 30 48-77 9-38 (110)
265 PRK10854 exopolyphosphatase; P 47.1 15 0.00033 42.9 3.1 45 225-275 327-376 (513)
266 TIGR01579 MiaB-like-C MiaB-lik 46.5 1.3E+02 0.0028 34.0 10.4 93 52-160 11-107 (414)
267 PRK05670 anthranilate synthase 46.5 51 0.0011 33.0 6.4 76 44-124 2-79 (189)
268 PRK07028 bifunctional hexulose 46.4 2.8E+02 0.0061 31.5 13.1 101 57-163 99-212 (430)
269 PRK01286 deoxyguanosinetriphos 45.8 18 0.00038 40.2 3.2 39 228-276 64-102 (336)
270 PRK04885 ppnK inorganic polyph 45.6 81 0.0018 33.8 8.0 79 53-165 16-95 (265)
271 PF01081 Aldolase: KDPG and KH 45.5 65 0.0014 33.1 7.0 91 59-154 3-94 (196)
272 PRK14723 flhF flagellar biosyn 45.1 1.6E+02 0.0034 36.5 11.1 102 42-145 216-330 (767)
273 PRK08007 para-aminobenzoate sy 45.0 26 0.00057 35.2 4.1 49 44-94 2-50 (187)
274 PRK02083 imidazole glycerol ph 45.0 2.3E+02 0.005 29.7 11.3 78 75-158 156-245 (253)
275 PRK13587 1-(5-phosphoribosyl)- 44.8 1.1E+02 0.0024 32.0 8.8 68 75-146 151-221 (234)
276 PRK12726 flagellar biosynthesi 44.7 2.2E+02 0.0048 32.5 11.5 103 41-145 234-349 (407)
277 TIGR00417 speE spermidine synt 44.7 1.6E+02 0.0034 31.3 10.1 68 42-113 97-176 (270)
278 PF03328 HpcH_HpaI: HpcH/HpaI 44.7 2E+02 0.0043 29.5 10.6 86 72-160 8-106 (221)
279 PF00534 Glycos_transf_1: Glyc 44.5 2.4E+02 0.0052 26.6 10.5 109 41-164 47-159 (172)
280 TIGR01302 IMP_dehydrog inosine 44.5 76 0.0016 36.5 8.1 65 74-144 226-291 (450)
281 COG0352 ThiE Thiamine monophos 44.4 2.6E+02 0.0057 29.1 11.3 68 70-144 110-184 (211)
282 PRK06731 flhF flagellar biosyn 44.2 1.7E+02 0.0038 31.4 10.3 101 41-144 103-217 (270)
283 cd00381 IMPDH IMPDH: The catal 44.1 2.7E+02 0.0059 30.6 12.1 101 41-145 106-225 (325)
284 PF07652 Flavi_DEAD: Flaviviru 44.0 75 0.0016 31.3 6.8 88 40-127 32-136 (148)
285 TIGR00853 pts-lac PTS system, 43.9 1.4E+02 0.0031 26.8 8.2 77 41-126 3-84 (95)
286 TIGR00064 ftsY signal recognit 43.9 1.7E+02 0.0038 31.3 10.3 93 39-135 98-210 (272)
287 PF03808 Glyco_tran_WecB: Glyc 43.9 1.5E+02 0.0033 29.3 9.2 69 41-113 48-125 (172)
288 COG0313 Predicted methyltransf 43.6 1.2E+02 0.0026 32.8 8.8 88 42-139 31-126 (275)
289 PRK03372 ppnK inorganic polyph 43.5 2.9E+02 0.0062 30.4 12.0 105 42-166 6-131 (306)
290 cd00331 IGPS Indole-3-glycerol 43.2 2.1E+02 0.0046 29.0 10.5 68 90-160 48-117 (217)
291 cd03825 GT1_wcfI_like This fam 43.2 74 0.0016 33.6 7.4 77 42-126 1-84 (365)
292 PRK12727 flagellar biosynthesi 43.1 1.3E+02 0.0029 35.6 9.8 84 42-128 381-470 (559)
293 TIGR01353 dGTP_triPase deoxygu 43.0 20 0.00044 40.3 3.2 48 228-276 40-89 (381)
294 PRK04180 pyridoxal biosynthesi 42.4 79 0.0017 34.4 7.3 62 101-165 190-258 (293)
295 PRK13143 hisH imidazole glycer 42.3 57 0.0012 33.0 6.1 44 42-93 1-44 (200)
296 cd06346 PBP1_ABC_ligand_bindin 42.2 2.3E+02 0.005 30.0 11.0 69 54-128 154-229 (312)
297 PRK03659 glutathione-regulated 42.2 1.3E+02 0.0027 36.1 9.8 97 39-146 421-518 (601)
298 COG0232 Dgt dGTP triphosphohyd 42.1 19 0.00042 40.9 2.8 40 229-273 71-110 (412)
299 PRK15427 colanic acid biosynth 42.0 2.7E+02 0.0058 31.3 11.9 107 42-162 254-369 (406)
300 PF02581 TMP-TENI: Thiamine mo 42.0 1.6E+02 0.0036 29.1 9.2 69 69-144 100-175 (180)
301 COG1639 Predicted signal trans 41.7 15 0.00031 40.0 1.7 40 228-276 118-157 (289)
302 PF14097 SpoVAE: Stage V sporu 41.4 2.8E+02 0.006 28.1 10.3 76 44-122 3-87 (180)
303 cd03818 GT1_ExpC_like This fam 41.4 1.9E+02 0.0042 31.8 10.6 77 73-163 290-366 (396)
304 cd00956 Transaldolase_FSA Tran 41.4 1.3E+02 0.0028 31.1 8.5 84 61-147 97-186 (211)
305 cd02809 alpha_hydroxyacid_oxid 41.3 2.8E+02 0.0062 29.9 11.6 88 55-146 162-256 (299)
306 PRK14329 (dimethylallyl)adenos 41.0 1.6E+02 0.0035 34.0 10.2 98 49-162 35-140 (467)
307 PLN02727 NAD kinase 40.9 3.1E+02 0.0068 34.7 12.7 130 12-165 646-801 (986)
308 PLN02591 tryptophan synthase 40.9 3.9E+02 0.0084 28.5 12.2 102 43-147 109-219 (250)
309 PRK01581 speE spermidine synth 40.9 1.1E+02 0.0024 34.6 8.4 69 42-113 175-258 (374)
310 COG0157 NadC Nicotinate-nucleo 40.8 3E+02 0.0065 29.9 11.3 92 43-142 160-258 (280)
311 PRK08072 nicotinate-nucleotide 40.8 2.5E+02 0.0054 30.4 10.9 93 43-145 160-259 (277)
312 TIGR02855 spore_yabG sporulati 40.7 2.2E+02 0.0047 30.9 10.1 103 40-147 103-226 (283)
313 cd06533 Glyco_transf_WecG_TagA 40.5 1.7E+02 0.0036 29.0 9.0 78 41-125 46-132 (171)
314 cd03801 GT1_YqgM_like This fam 40.3 4E+02 0.0088 27.1 12.2 107 42-163 231-341 (374)
315 TIGR00875 fsa_talC_mipB fructo 40.1 1.2E+02 0.0026 31.5 8.1 84 60-147 96-186 (213)
316 cd04726 KGPDC_HPS 3-Keto-L-gul 39.9 98 0.0021 30.8 7.3 86 71-160 9-99 (202)
317 PLN02274 inosine-5'-monophosph 39.9 1.2E+02 0.0025 35.7 8.8 55 87-145 260-316 (505)
318 PRK12723 flagellar biosynthesi 39.8 2.8E+02 0.0062 31.4 11.6 101 41-144 206-318 (388)
319 PRK02649 ppnK inorganic polyph 39.8 2.3E+02 0.005 31.0 10.6 104 42-165 2-126 (305)
320 cd03820 GT1_amsD_like This fam 39.6 4.2E+02 0.0092 26.9 12.4 107 42-162 210-318 (348)
321 TIGR01305 GMP_reduct_1 guanosi 39.5 1.3E+02 0.0028 33.6 8.5 57 87-146 121-178 (343)
322 cd05013 SIS_RpiR RpiR-like pro 39.4 2.5E+02 0.0054 25.3 9.5 84 43-130 15-100 (139)
323 TIGR00078 nadC nicotinate-nucl 39.3 1.7E+02 0.0038 31.3 9.4 93 43-145 150-249 (265)
324 TIGR03449 mycothiol_MshA UDP-N 39.2 4.4E+02 0.0095 28.8 13.0 107 42-162 253-367 (405)
325 COG0118 HisH Glutamine amidotr 39.2 71 0.0015 33.0 6.1 37 41-77 1-37 (204)
326 TIGR01815 TrpE-clade3 anthrani 39.1 63 0.0014 39.6 6.7 81 37-124 512-595 (717)
327 TIGR00959 ffh signal recogniti 39.1 2.5E+02 0.0053 32.4 11.1 102 41-145 128-246 (428)
328 PRK14340 (dimethylallyl)adenos 39.0 2.4E+02 0.0052 32.5 11.1 109 37-161 2-122 (445)
329 TIGR01305 GMP_reduct_1 guanosi 38.8 3.8E+02 0.0081 30.1 11.9 102 42-146 122-241 (343)
330 PRK00726 murG undecaprenyldiph 38.6 4.4E+02 0.0094 28.4 12.7 65 88-163 253-324 (357)
331 cd03114 ArgK-like The function 38.6 62 0.0013 31.3 5.4 44 74-126 80-123 (148)
332 PRK04539 ppnK inorganic polyph 38.3 3.9E+02 0.0083 29.2 12.0 105 41-165 5-126 (296)
333 COG4122 Predicted O-methyltran 38.1 90 0.0019 32.7 6.8 57 41-98 84-143 (219)
334 PRK10867 signal recognition pa 38.0 3.3E+02 0.0072 31.4 11.9 102 41-145 129-247 (433)
335 PRK10669 putative cation:proto 37.9 2.4E+02 0.0053 33.2 11.2 107 41-161 440-547 (558)
336 PRK09140 2-dehydro-3-deoxy-6-p 37.9 2.6E+02 0.0056 28.8 10.1 92 60-160 99-199 (206)
337 TIGR01306 GMP_reduct_2 guanosi 37.6 6E+02 0.013 28.2 13.3 99 42-146 109-227 (321)
338 PRK00955 hypothetical protein; 37.5 2.1E+02 0.0046 34.5 10.5 116 42-163 14-180 (620)
339 PRK05567 inosine 5'-monophosph 37.5 1.4E+02 0.003 34.7 9.0 65 75-144 230-295 (486)
340 PRK14075 pnk inorganic polypho 37.5 3E+02 0.0065 29.3 10.8 85 51-165 12-96 (256)
341 PF04321 RmlD_sub_bind: RmlD s 37.4 51 0.0011 35.2 5.1 80 42-126 1-102 (286)
342 cd03804 GT1_wbaZ_like This fam 37.4 2.1E+02 0.0046 30.6 9.9 105 42-163 222-326 (351)
343 PF01564 Spermine_synth: Sperm 37.4 1.5E+02 0.0033 31.2 8.5 68 42-113 101-181 (246)
344 PF00290 Trp_syntA: Tryptophan 37.3 60 0.0013 34.8 5.5 55 102-158 74-134 (259)
345 cd02810 DHOD_DHPD_FMN Dihydroo 37.1 2.6E+02 0.0056 29.7 10.4 40 103-144 230-270 (289)
346 CHL00101 trpG anthranilate syn 37.0 44 0.00095 33.6 4.3 48 44-93 2-49 (190)
347 PRK10909 rsmD 16S rRNA m(2)G96 36.9 2.5E+02 0.0053 28.7 9.7 82 41-127 76-161 (199)
348 PRK14325 (dimethylallyl)adenos 36.9 3.6E+02 0.0079 30.8 12.1 97 49-161 15-119 (444)
349 cd03785 GT1_MurG MurG is an N- 36.7 4.9E+02 0.011 27.7 12.6 65 88-162 253-323 (350)
350 PRK03007 deoxyguanosinetriphos 36.7 28 0.00061 39.9 3.1 40 227-276 71-110 (428)
351 PRK13146 hisH imidazole glycer 36.6 76 0.0017 32.5 6.0 45 41-93 1-47 (209)
352 PRK02615 thiamine-phosphate py 36.6 3E+02 0.0066 30.8 11.0 69 70-145 246-321 (347)
353 PF00563 EAL: EAL domain; Int 36.5 56 0.0012 32.7 5.0 83 55-141 138-226 (236)
354 PRK06552 keto-hydroxyglutarate 36.5 1.8E+02 0.0038 30.2 8.7 80 57-145 101-182 (213)
355 PF05582 Peptidase_U57: YabG p 36.2 2.4E+02 0.0052 30.7 9.7 102 41-147 105-227 (287)
356 cd01572 QPRTase Quinolinate ph 36.2 2.9E+02 0.0063 29.7 10.5 92 43-144 154-252 (268)
357 cd06382 PBP1_iGluR_Kainate N-t 36.1 2.9E+02 0.0062 29.4 10.6 67 43-113 131-205 (327)
358 PRK09522 bifunctional glutamin 36.1 52 0.0011 38.8 5.2 77 41-124 1-84 (531)
359 PRK11572 copper homeostasis pr 36.1 2.1E+02 0.0046 30.6 9.2 91 49-144 98-196 (248)
360 cd04740 DHOD_1B_like Dihydroor 35.8 3.5E+02 0.0075 28.9 11.2 59 103-164 220-284 (296)
361 PRK11036 putative S-adenosyl-L 35.7 3.5E+02 0.0076 28.2 11.0 79 41-123 66-148 (255)
362 KOG1203 Predicted dehydrogenas 35.7 94 0.002 35.5 6.9 109 41-160 79-188 (411)
363 TIGR00734 hisAF_rel hisA/hisF 35.5 2.1E+02 0.0046 29.7 9.1 69 73-146 142-213 (221)
364 PRK13170 hisH imidazole glycer 35.5 88 0.0019 31.7 6.2 44 42-93 1-44 (196)
365 TIGR01859 fruc_bis_ald_ fructo 35.4 4.8E+02 0.01 28.2 12.1 81 71-161 152-241 (282)
366 COG0421 SpeE Spermidine syntha 35.4 1.7E+02 0.0036 31.8 8.5 70 41-113 100-180 (282)
367 cd03819 GT1_WavL_like This fam 35.3 5.5E+02 0.012 26.9 12.7 108 42-162 217-329 (355)
368 PRK10060 RNase II stability mo 35.2 2.6E+02 0.0057 33.6 11.1 102 55-159 544-656 (663)
369 TIGR03471 HpnJ hopanoid biosyn 35.1 1.3E+02 0.0028 34.7 8.1 91 51-150 34-130 (472)
370 PRK01033 imidazole glycerol ph 35.0 2E+02 0.0043 30.5 9.0 69 73-145 153-225 (258)
371 TIGR03276 Phn-HD phosphonate d 35.0 22 0.00047 36.0 1.7 13 262-274 46-58 (179)
372 cd02911 arch_FMN Archeal FMN-b 34.9 5.1E+02 0.011 27.1 11.9 91 47-145 122-219 (233)
373 PRK03612 spermidine synthase; 34.9 1.5E+02 0.0033 34.8 8.8 69 42-113 322-405 (521)
374 PRK13125 trpA tryptophan synth 34.7 2.5E+02 0.0054 29.4 9.6 56 104-162 64-127 (244)
375 COG3688 Predicted RNA-binding 34.5 1.6E+02 0.0035 29.5 7.4 110 40-160 1-135 (173)
376 PRK10416 signal recognition pa 34.4 4E+02 0.0087 29.3 11.5 95 40-136 141-253 (318)
377 COG2844 GlnD UTP:GlnB (protein 34.3 17 0.00037 44.4 0.9 48 228-275 448-499 (867)
378 TIGR02085 meth_trns_rumB 23S r 34.2 2.9E+02 0.0063 30.9 10.6 87 42-138 256-346 (374)
379 TIGR01303 IMP_DH_rel_1 IMP deh 34.2 1.4E+02 0.0031 34.7 8.3 67 73-144 225-292 (475)
380 TIGR02329 propionate_PrpR prop 34.1 2.1E+02 0.0046 33.7 9.8 38 192-229 234-272 (526)
381 PRK05446 imidazole glycerol-ph 34.0 5.5E+02 0.012 28.8 12.6 103 53-158 35-162 (354)
382 TIGR01163 rpe ribulose-phospha 34.0 3.4E+02 0.0075 27.0 10.2 56 101-159 43-99 (210)
383 cd02801 DUS_like_FMN Dihydrour 34.0 4.1E+02 0.0089 26.9 11.0 91 49-144 107-211 (231)
384 cd04731 HisF The cyclase subun 33.9 2.3E+02 0.005 29.3 9.2 62 78-145 155-222 (243)
385 PRK07455 keto-hydroxyglutarate 33.9 2.8E+02 0.0061 27.9 9.5 92 59-154 7-99 (187)
386 PRK12656 fructose-6-phosphate 33.8 2.1E+02 0.0045 30.0 8.7 84 60-147 100-190 (222)
387 PRK06543 nicotinate-nucleotide 33.8 6.4E+02 0.014 27.5 12.6 91 43-143 161-262 (281)
388 cd06326 PBP1_STKc_like Type I 33.6 4.7E+02 0.01 27.6 11.8 65 55-125 154-225 (336)
389 PF07514 TraI_2: Putative heli 33.5 33 0.00071 37.9 2.9 51 225-275 65-120 (327)
390 COG1453 Predicted oxidoreducta 33.3 1.6E+02 0.0035 33.2 8.1 83 45-147 87-174 (391)
391 cd00381 IMPDH IMPDH: The catal 33.2 1.8E+02 0.004 32.0 8.6 56 87-145 106-162 (325)
392 cd06329 PBP1_SBP_like_3 Peripl 33.2 4.4E+02 0.0096 28.2 11.6 77 42-124 144-234 (342)
393 PRK04338 N(2),N(2)-dimethylgua 33.1 5.5E+02 0.012 29.0 12.5 77 43-129 83-162 (382)
394 PRK04457 spermidine synthase; 32.8 3.9E+02 0.0084 28.4 10.8 69 42-113 91-167 (262)
395 COG3967 DltE Short-chain dehyd 32.7 2.1E+02 0.0045 30.2 8.2 78 43-124 7-85 (245)
396 TIGR03569 NeuB_NnaB N-acetylne 32.7 2E+02 0.0042 32.0 8.7 78 51-136 75-152 (329)
397 cd03313 enolase Enolase: Enola 32.7 3E+02 0.0065 31.3 10.4 103 48-154 210-343 (408)
398 PRK14722 flhF flagellar biosyn 32.5 2.9E+02 0.0064 31.2 10.2 90 42-133 168-263 (374)
399 PRK07764 DNA polymerase III su 32.4 1.4E+02 0.0029 37.4 8.1 75 86-164 119-195 (824)
400 cd06389 PBP1_iGluR_AMPA_GluR2 32.3 3.2E+02 0.007 30.2 10.5 48 75-126 166-213 (370)
401 PF01959 DHQS: 3-dehydroquinat 32.3 4.1E+02 0.0088 29.9 10.9 71 88-162 97-169 (354)
402 PRK05742 nicotinate-nucleotide 32.2 3.1E+02 0.0068 29.7 10.0 93 43-145 162-260 (277)
403 PRK01189 V-type ATP synthase s 32.2 2.7E+02 0.0058 25.7 8.2 74 40-122 1-76 (104)
404 TIGR02149 glgA_Coryne glycogen 32.2 4.7E+02 0.01 28.2 11.7 107 42-162 230-351 (388)
405 PF01729 QRPTase_C: Quinolinat 32.2 1.7E+02 0.0037 29.2 7.4 59 103-164 67-125 (169)
406 TIGR00479 rumA 23S rRNA (uraci 32.1 3.9E+02 0.0085 30.3 11.4 78 42-125 315-396 (431)
407 PTZ00170 D-ribulose-5-phosphat 32.1 1.1E+02 0.0024 31.9 6.4 103 55-162 104-222 (228)
408 PRK09922 UDP-D-galactose:(gluc 32.0 4E+02 0.0086 28.9 11.1 109 42-165 211-326 (359)
409 PTZ00314 inosine-5'-monophosph 32.0 1.4E+02 0.0031 34.9 7.8 55 87-144 253-308 (495)
410 PF04131 NanE: Putative N-acet 31.9 1.3E+02 0.0028 30.9 6.5 71 65-146 45-118 (192)
411 PLN02366 spermidine synthase 31.8 2.9E+02 0.0064 30.2 9.8 70 42-113 116-196 (308)
412 PF00478 IMPDH: IMP dehydrogen 31.7 1.9E+02 0.0042 32.4 8.5 69 73-146 108-177 (352)
413 PRK02645 ppnK inorganic polyph 31.7 3.3E+02 0.0072 29.7 10.2 104 42-164 4-116 (305)
414 PRK05031 tRNA (uracil-5-)-meth 31.7 5E+02 0.011 28.9 11.9 78 42-127 229-322 (362)
415 PRK00025 lpxB lipid-A-disaccha 31.6 5.1E+02 0.011 28.1 11.9 22 141-162 319-340 (380)
416 cd02940 DHPD_FMN Dihydropyrimi 31.6 2.8E+02 0.0061 29.9 9.6 42 103-145 239-280 (299)
417 PRK04128 1-(5-phosphoribosyl)- 31.5 4.3E+02 0.0093 27.5 10.6 69 72-146 30-102 (228)
418 PRK04128 1-(5-phosphoribosyl)- 31.4 2E+02 0.0042 30.1 8.1 66 73-145 144-210 (228)
419 PRK14076 pnk inorganic polypho 31.3 2.3E+02 0.0049 33.8 9.5 106 40-165 289-406 (569)
420 PLN02316 synthase/transferase 31.2 5E+02 0.011 33.4 12.7 70 88-164 920-999 (1036)
421 PRK12653 fructose-6-phosphate 31.2 2.1E+02 0.0046 29.9 8.2 83 60-146 98-187 (220)
422 cd04733 OYE_like_2_FMN Old yel 30.9 3.6E+02 0.0078 29.6 10.5 40 103-145 281-320 (338)
423 cd05212 NAD_bind_m-THF_DH_Cycl 30.9 2.1E+02 0.0046 27.7 7.6 54 39-99 26-83 (140)
424 PRK08883 ribulose-phosphate 3- 30.9 1.8E+02 0.0038 30.3 7.6 86 57-146 98-195 (220)
425 PF06283 ThuA: Trehalose utili 30.6 1.3E+02 0.0029 30.5 6.7 76 43-124 1-88 (217)
426 TIGR01302 IMP_dehydrog inosine 30.4 4.5E+02 0.0098 30.3 11.5 103 41-147 236-357 (450)
427 PRK14326 (dimethylallyl)adenos 30.4 4.3E+02 0.0093 31.0 11.4 98 49-162 25-130 (502)
428 PRK07765 para-aminobenzoate sy 30.2 72 0.0016 32.9 4.6 75 42-124 1-83 (214)
429 TIGR01425 SRP54_euk signal rec 30.2 3.8E+02 0.0083 30.9 10.7 102 40-145 127-246 (429)
430 PRK06978 nicotinate-nucleotide 30.2 4.6E+02 0.0099 28.8 10.8 91 43-143 178-274 (294)
431 PRK09016 quinolinate phosphori 30.2 2.5E+02 0.0055 30.7 8.9 92 43-144 181-278 (296)
432 TIGR03590 PseG pseudaminic aci 30.1 3.2E+02 0.0069 29.1 9.7 75 41-127 31-113 (279)
433 TIGR00642 mmCoA_mut_beta methy 29.9 3.8E+02 0.0082 32.4 11.0 110 42-159 495-614 (619)
434 PLN02781 Probable caffeoyl-CoA 29.6 2E+02 0.0043 30.0 7.8 55 42-96 94-153 (234)
435 PRK13609 diacylglycerol glucos 29.6 7E+02 0.015 27.1 12.6 16 147-162 322-337 (380)
436 cd06388 PBP1_iGluR_AMPA_GluR4 29.5 5E+02 0.011 28.8 11.4 57 55-113 141-202 (371)
437 PRK12655 fructose-6-phosphate 29.3 2.3E+02 0.0049 29.7 8.1 83 60-146 98-187 (220)
438 PRK06512 thiamine-phosphate py 29.3 6.4E+02 0.014 26.2 11.4 66 72-144 119-190 (221)
439 cd01568 QPRTase_NadC Quinolina 29.3 3.9E+02 0.0084 28.6 10.1 94 43-145 153-254 (269)
440 TIGR00737 nifR3_yhdG putative 29.3 5E+02 0.011 28.2 11.2 94 47-145 113-221 (319)
441 PF00218 IGPS: Indole-3-glycer 29.2 4.7E+02 0.01 28.0 10.6 87 55-146 148-238 (254)
442 TIGR03128 RuMP_HxlA 3-hexulose 29.1 5.9E+02 0.013 25.4 14.5 85 55-145 92-185 (206)
443 PRK15320 transcriptional activ 28.8 1.8E+02 0.0038 30.4 6.8 105 42-158 2-110 (251)
444 cd03806 GT1_ALG11_like This fa 28.7 5.9E+02 0.013 28.6 12.0 107 42-163 274-392 (419)
445 cd06348 PBP1_ABC_ligand_bindin 28.6 5.1E+02 0.011 27.7 11.1 57 53-113 153-216 (344)
446 PF00977 His_biosynth: Histidi 28.6 2.4E+02 0.0052 29.3 8.2 69 73-145 148-219 (229)
447 cd06296 PBP1_CatR_like Ligand- 28.5 2.2E+02 0.0048 28.9 7.9 65 52-125 16-86 (270)
448 KOG2335 tRNA-dihydrouridine sy 28.4 3.8E+02 0.0081 30.2 9.8 104 41-146 117-233 (358)
449 cd04737 LOX_like_FMN L-Lactate 28.4 5.2E+02 0.011 29.0 11.2 87 56-146 212-305 (351)
450 COG1568 Predicted methyltransf 28.3 52 0.0011 35.8 3.2 57 37-95 171-229 (354)
451 TIGR03128 RuMP_HxlA 3-hexulose 28.2 2.4E+02 0.0051 28.3 7.9 86 71-160 8-98 (206)
452 cd00405 PRAI Phosphoribosylant 28.1 3E+02 0.0065 27.7 8.6 52 86-143 119-178 (203)
453 cd06282 PBP1_GntR_like_2 Ligan 28.0 3.1E+02 0.0068 27.5 8.9 66 53-126 17-88 (266)
454 cd06341 PBP1_ABC_ligand_bindin 28.0 6.8E+02 0.015 26.6 11.9 72 53-130 149-227 (341)
455 PRK06559 nicotinate-nucleotide 28.0 5.9E+02 0.013 27.9 11.1 91 43-143 169-266 (290)
456 cd00532 MGS-like MGS-like doma 27.8 1.8E+02 0.0038 26.7 6.3 29 50-78 10-38 (112)
457 PRK14077 pnk inorganic polypho 27.6 4.7E+02 0.01 28.4 10.4 105 41-165 10-122 (287)
458 COG2089 SpsE Sialic acid synth 27.6 3.7E+02 0.0081 30.0 9.5 88 50-145 88-179 (347)
459 COG3481 Predicted HD-superfami 27.5 49 0.0011 36.0 2.8 44 223-275 138-181 (287)
460 PRK12376 putative translaldola 27.4 4.6E+02 0.01 27.8 10.0 88 59-147 106-200 (236)
461 PF03932 CutC: CutC family; I 27.4 1.7E+02 0.0037 30.2 6.7 92 48-143 96-196 (201)
462 PRK05437 isopentenyl pyrophosp 27.3 6.7E+02 0.015 27.9 11.9 88 53-145 174-289 (352)
463 cd06343 PBP1_ABC_ligand_bindin 27.2 5.8E+02 0.013 27.4 11.3 77 43-125 146-233 (362)
464 PRK07414 cob(I)yrinic acid a,c 27.2 2E+02 0.0042 29.3 6.9 46 86-134 114-164 (178)
465 TIGR00708 cobA cob(I)alamin ad 27.2 1.8E+02 0.0039 29.3 6.6 46 86-134 96-146 (173)
466 PLN02819 lysine-ketoglutarate 27.1 6.2E+02 0.013 32.7 12.6 115 39-162 567-694 (1042)
467 cd02811 IDI-2_FMN Isopentenyl- 27.1 6.5E+02 0.014 27.6 11.6 88 53-145 166-283 (326)
468 COG0626 MetC Cystathionine bet 26.9 4.5E+02 0.0097 30.0 10.4 95 42-143 103-204 (396)
469 PRK07807 inosine 5-monophospha 26.9 5.7E+02 0.012 29.9 11.6 66 74-144 228-294 (479)
470 PRK03522 rumB 23S rRNA methylu 26.9 4.2E+02 0.0091 28.8 10.0 77 42-127 196-276 (315)
471 PRK05096 guanosine 5'-monophos 26.8 2.5E+02 0.0054 31.4 8.1 55 87-144 122-177 (346)
472 TIGR03365 Bsubt_queE 7-cyano-7 26.8 7.5E+02 0.016 25.8 11.7 103 42-150 74-187 (238)
473 cd04736 MDH_FMN Mandelate dehy 26.8 4.3E+02 0.0092 29.8 10.1 85 56-146 227-318 (361)
474 PF02572 CobA_CobO_BtuR: ATP:c 26.6 1.7E+02 0.0037 29.4 6.4 47 86-135 95-146 (172)
475 PRK07024 short chain dehydroge 26.6 5.8E+02 0.013 26.0 10.7 82 40-124 1-85 (257)
476 cd06345 PBP1_ABC_ligand_bindin 26.5 7.4E+02 0.016 26.5 11.9 66 53-124 160-232 (344)
477 cd01748 GATase1_IGP_Synthase T 26.4 1.9E+02 0.0042 29.0 6.8 42 44-93 1-42 (198)
478 PRK05986 cob(I)alamin adenolsy 26.3 1.2E+02 0.0026 31.1 5.2 46 86-134 114-164 (191)
479 PRK08649 inosine 5-monophospha 26.3 8.6E+02 0.019 27.4 12.5 66 73-145 142-214 (368)
480 cd06366 PBP1_GABAb_receptor Li 26.3 8.1E+02 0.018 26.2 12.2 57 53-113 151-216 (350)
481 PRK15490 Vi polysaccharide bio 26.2 9.3E+02 0.02 29.0 13.2 103 42-159 430-534 (578)
482 cd06330 PBP1_Arsenic_SBP_like 26.2 5.7E+02 0.012 27.2 10.9 35 88-124 196-230 (346)
483 PRK10415 tRNA-dihydrouridine s 26.1 5E+02 0.011 28.5 10.5 95 46-145 114-223 (321)
484 PF14606 Lipase_GDSL_3: GDSL-l 26.0 88 0.0019 31.7 4.2 60 63-126 31-102 (178)
485 TIGR00089 RNA modification enz 26.0 3.9E+02 0.0084 30.3 9.9 95 52-161 14-113 (429)
486 TIGR01133 murG undecaprenyldip 25.8 8.1E+02 0.018 25.9 12.9 65 88-162 251-320 (348)
487 PRK13585 1-(5-phosphoribosyl)- 25.6 6E+02 0.013 26.1 10.6 68 73-145 150-221 (241)
488 PLN02334 ribulose-phosphate 3- 25.6 7.5E+02 0.016 25.4 12.3 91 51-146 102-202 (229)
489 PRK08185 hypothetical protein; 25.6 6.8E+02 0.015 27.2 11.1 102 64-165 11-119 (283)
490 cd01541 PBP1_AraR Ligand-bindi 25.6 3.8E+02 0.0081 27.3 9.0 68 52-125 16-91 (273)
491 COG1748 LYS9 Saccharopine dehy 25.5 5.1E+02 0.011 29.5 10.5 97 41-147 1-99 (389)
492 cd03795 GT1_like_4 This family 25.5 7.8E+02 0.017 25.6 13.4 109 41-163 218-332 (357)
493 PRK05718 keto-hydroxyglutarate 25.5 7.2E+02 0.016 25.7 10.9 51 45-97 20-75 (212)
494 cd05844 GT1_like_7 Glycosyltra 25.4 8E+02 0.017 25.9 11.9 108 42-163 220-336 (367)
495 PF07279 DUF1442: Protein of u 25.3 3.3E+02 0.0072 28.6 8.2 73 43-124 71-148 (218)
496 cd04731 HisF The cyclase subun 25.3 2.1E+02 0.0045 29.7 7.0 71 71-146 26-100 (243)
497 COG0269 SgbH 3-hexulose-6-phos 25.3 8.1E+02 0.018 25.7 12.8 118 42-163 84-214 (217)
498 PLN02589 caffeoyl-CoA O-methyl 25.3 5.4E+02 0.012 27.3 10.2 55 42-96 105-165 (247)
499 cd05564 PTS_IIB_chitobiose_lic 25.2 2.8E+02 0.0061 24.8 6.9 66 52-126 14-80 (96)
500 PRK09590 celB cellobiose phosp 25.1 4.4E+02 0.0096 24.2 8.3 95 42-158 2-101 (104)
No 1
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-33 Score=299.25 Aligned_cols=225 Identities=21% Similarity=0.266 Sum_probs=182.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh-ccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME-HDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~-~~~~p~i 118 (720)
.+++||+|||++..+..++.+|+..+|.|..|.+|++|++++...+ +|+||+|++||+|+|+++|.+|+. .+.+..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 3579999999999999999999999999999999999999998755 999999999999999999999999 6677889
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCCcccchhhhhcccCccccccccccCCchh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQNLHDVYHKGGAISENNMASSHSSDY 198 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~~~~~~~~~~~~~~~~~el~~~s~~~~~~ 198 (720)
|||++|++.+.+...+|+..||+|||.|||++.+|...+...++.+..-.....+..... ..++... ...
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~~~~~~le------~~e~~~~----~~e 160 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLLDQNLYLE------LQELRRR----TEE 160 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HHH
Confidence 999999999999999999999999999999999999998765544321000111111111 0111000 000
Q ss_pred hhhh-----hhhhHHHHhhhhhccCCCCcchhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccc
Q 042954 199 AASS-----QKNKGSEKVSDAQSSRTSSPYLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKT 273 (720)
Q Consensus 199 ~~~~-----~~~kei~~ls~arS~~T~~~~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGK 273 (720)
.... .+.+++..+.+.++.+| |.|+.||+.|++++|+.+ ||++. +++.|++||+||||||
T Consensus 161 ~~~~~~~~~~t~~~L~~~~E~R~~et--------g~H~~Rv~~~~~~lAe~l-gLse~------~v~~i~~AapLHDIGK 225 (360)
T COG3437 161 LAQIEDNLDETLEELAALLEVRDYET--------GDHLERVAQYSELLAELL-GLSEE------EVDLIKKAAPLHDIGK 225 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccch--------hhHHHHHHHHHHHHHHHh-CCCHH------HHHHHHhccchhhccc
Confidence 1111 12223777778899999 999999999999999999 99988 9999999999999999
Q ss_pred ccCCcccc-ccccccccCC
Q 042954 274 GGASDELI-VSEKLNRSGS 291 (720)
Q Consensus 274 I~iPD~IL-KPgkL~~~~~ 291 (720)
|+|||+|| |||+|+.-..
T Consensus 226 vaiPD~ILlKpg~Lt~ee~ 244 (360)
T COG3437 226 VAIPDSILLKPGKLTSEEF 244 (360)
T ss_pred ccCChHHhcCCCCCCHHHH
Confidence 99999999 9999986433
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.89 E-value=8.6e-23 Score=227.03 Aligned_cols=186 Identities=24% Similarity=0.384 Sum_probs=154.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+.+|||||||+.+|..+..+|+..||.|..+.++.+|++.+... .|||||+|++||+++|+++++.|++.. +.+|
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~p 78 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRD--PDLP 78 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhC--CCCC
Confidence 456899999999999999999999999999999999999999874 599999999999999999999999987 9999
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCCccc------------chhhhhcccCcccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQ------------NLHDVYHKGGAISE 187 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~~~~------------~~~~~~~~~~~~~e 187 (720)
|||||++.+.+++++|++.||+|||.|||+.++|...|++++............ ........+.....
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~ 158 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIA 158 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876542111100 00001111112222
Q ss_pred ccccccCCchhhhhhhhhhH-HHHhhhhhccCCCCcchhhhhh
Q 042954 188 NNMASSHSSDYAASSQKNKG-SEKVSDAQSSRTSSPYLEAESA 229 (720)
Q Consensus 188 l~~~s~~~~~~~~~~~~~ke-i~~ls~arS~~T~~~~v~~~g~ 229 (720)
..+.++..+...+.+++.|| +++..+..|.+..+|||.++.+
T Consensus 159 kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNca 201 (464)
T COG2204 159 KVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCA 201 (464)
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecc
Confidence 23456667888999999999 9999999999887899987644
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.85 E-value=1e-20 Score=195.08 Aligned_cols=121 Identities=29% Similarity=0.448 Sum_probs=114.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++|||||||+.++..|...|+..||+|..+.++.+|++.+.. . |||||+|++||+++|+++|++||+. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 489999999999999999999999999999999999999875 5 9999999999999999999999965 44678999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|||+.++....+.+++.||+|||+|||++.||...|+.++++...
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 999999999999999999999999999999999999999998753
No 4
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.82 E-value=5.4e-20 Score=204.54 Aligned_cols=119 Identities=25% Similarity=0.484 Sum_probs=111.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHH--hCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLR--KCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~--~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
|.+||||||++.+|++|+.++. .+||+|+. |.||.+||+++.+. .|||||+|++||+|||++|++.|++.. |+
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~--p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQS--PD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 6899999999999999999994 55888776 99999999999884 599999999999999999999999977 99
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+.+|||||+.+.+.+.+|++.|+.|||+||++..+|..++.++...
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998654
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.79 E-value=6e-19 Score=173.50 Aligned_cols=121 Identities=26% Similarity=0.433 Sum_probs=113.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..-|.|||||..+|+.+..+|+..||+|..+.++.+.|..... ..|-++|+|++||+++|++|..++.+.. ..+||
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PV 79 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPV 79 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcC--CCCCE
Confidence 4579999999999999999999999999999999999988533 5699999999999999999999999987 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||||+|.+..+.++||+.||.|||.||++...|..+|+++++...
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 6
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.79 E-value=4.2e-18 Score=173.61 Aligned_cols=130 Identities=22% Similarity=0.378 Sum_probs=117.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC-CEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG-YRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g-yeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++||||||++.++.+|+.+|...+ ++|+. +.++.++++.+.. ..|||||+|+.||+++|++++++|++.. |+++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~~~--p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRARG--PDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHHHC--CCCc
Confidence 479999999999999999998874 88776 8889999999776 5699999999999999999999999765 8999
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCCcccch
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQNL 175 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~~~~~~ 175 (720)
||++|.+.+...+.+++++||.+|+.|..+.++|..+|+.++.+..++.+......
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~ 132 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKL 132 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766544433
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.78 E-value=8.7e-18 Score=203.10 Aligned_cols=161 Identities=22% Similarity=0.229 Sum_probs=136.0
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccccccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLA 76 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~e 76 (720)
.|||+|.|.|.+| |+|.||.......... .+....+....+||||||++.++..+..+|+..||+|..+.++.+
T Consensus 639 ~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~--~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~ 716 (914)
T PRK11466 639 AMGGELSATSTPEVGSCFCLRLPLRVATAPVPK--TVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQ 716 (914)
T ss_pred HcCCEEEEEecCCCCeEEEEEEEcccccccccc--ccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHH
Confidence 3899999999876 9999997654321111 111112233569999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 042954 77 AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 77 Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~ 156 (720)
|++.+... ..|||||+|+.||+++|+++++.|++.. +.+|||++|++.......+++..|+++||.||++.++|...
T Consensus 717 al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~ 793 (914)
T PRK11466 717 ALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQY--PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQL 793 (914)
T ss_pred HHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHH
Confidence 99988642 3589999999999999999999999865 78999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 042954 157 WQHVWRRHSL 166 (720)
Q Consensus 157 l~~vlr~~~~ 166 (720)
|..+++....
T Consensus 794 i~~~~~~~~~ 803 (914)
T PRK11466 794 LAHYLQLQVN 803 (914)
T ss_pred HHHHhhhccc
Confidence 9998876543
No 8
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-17 Score=167.45 Aligned_cols=122 Identities=20% Similarity=0.352 Sum_probs=112.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKC-GYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++|||||||+.+.++-+++++.. ||.++. |.++++|..+++. ..|||||+|+-||+.+|++||.+||+.. ..+-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPDGNGIELLPELRSQH--YPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCCCccHHHHHHHHhcC--CCCC
Confidence 48999999999999999999986 898766 9999999999987 4589999999999999999999999987 7789
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
||++|+-.+.+++.+|++.||.|||.|||..+.|.+++.+..+..+.+
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987776654
No 9
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.77 E-value=1.4e-17 Score=149.18 Aligned_cols=111 Identities=33% Similarity=0.583 Sum_probs=106.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gy-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
||||||++..+..++.+|+..|| +|..+.++.+|++.++. ..||+||+|+.||+++|++++++|+... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 99999999999999987 4599999999999999999999999987 8999999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~ 158 (720)
+|...+.....++++.|+++||.||++.++|..+|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999998875
No 10
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.73 E-value=2.7e-16 Score=189.87 Aligned_cols=121 Identities=23% Similarity=0.406 Sum_probs=111.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc--CCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD--VCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~--~~p~i 118 (720)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.||+.. ..+.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 3689999999999999999999999999999999999999976 4599999999999999999999999752 23679
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|||++|++.+.+...+|++.|+++||.||++.++|...+..+++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887653
No 11
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.73 E-value=8.5e-19 Score=134.52 Aligned_cols=45 Identities=51% Similarity=0.977 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhccCCCceeeecchhhhhhhCCCccceeeeccC
Q 042954 664 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVK 708 (720)
Q Consensus 664 r~~~~~~~~~k~~~r~~~k~i~y~~rk~~a~~~~r~~g~f~~~~~ 708 (720)
|+++|+||++||+.|+|+|+|||+|||.+||.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 689999999999999999999999999999999999999999753
No 12
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.72 E-value=1.2e-16 Score=190.61 Aligned_cols=160 Identities=22% Similarity=0.310 Sum_probs=131.7
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccccccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLA 76 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~e 76 (720)
.|||+|+|.|.+| |+|+||........... .-....+...++||||||++..+..+..+|+..||.|..+.++.+
T Consensus 482 ~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~-~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~e 560 (779)
T PRK11091 482 AMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDA-FDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKE 560 (779)
T ss_pred HcCCEEEEEecCCCeEEEEEEEeccccccccccc-cccccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHH
Confidence 4899999999987 99999976543211110 111222333579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC-CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 042954 77 AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN-IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155 (720)
Q Consensus 77 Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~-ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~ 155 (720)
|++.+.. ..|||||+|+.||+++|+++++.|++....+. +|||++|++... ...++++.|+++||.||++..+|..
T Consensus 561 al~~~~~--~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~ 637 (779)
T PRK11091 561 ALEMFDP--DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTA 637 (779)
T ss_pred HHHHhhc--CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHH
Confidence 9999975 45999999999999999999999998753345 489999987754 4678999999999999999999999
Q ss_pred HHHHHHhhc
Q 042954 156 LWQHVWRRH 164 (720)
Q Consensus 156 ~l~~vlr~~ 164 (720)
.|++++...
T Consensus 638 ~l~~~~~~~ 646 (779)
T PRK11091 638 MIKKFWDTQ 646 (779)
T ss_pred HHHHHhccc
Confidence 999987654
No 13
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.72 E-value=1.4e-16 Score=193.52 Aligned_cols=160 Identities=26% Similarity=0.317 Sum_probs=135.0
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccccccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLA 76 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~e 76 (720)
.|||+|.|.|.+| |+|.||+......... .-.........+||||||++..+..++.+|+..||+|..+.++.+
T Consensus 660 ~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~--~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~ 737 (968)
T TIGR02956 660 AMDGELGVESELGVGSCFWFTLPLTRGKPAEDS--ATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQS 737 (968)
T ss_pred HcCCEEEEEecCCCcEEEEEEEEcCCCCccccc--cccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHH
Confidence 4899999999987 9999997654322111 100112223468999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC-CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 042954 77 AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN-IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155 (720)
Q Consensus 77 Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~-ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~ 155 (720)
|++.+.. ..|||||+|+.||+++|+++++.|++...... +|||++|++...+...+++..|+++||.||++..+|..
T Consensus 738 a~~~l~~--~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~ 815 (968)
T TIGR02956 738 ALECFHQ--HAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTA 815 (968)
T ss_pred HHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHH
Confidence 9999986 45999999999999999999999998753222 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 042954 156 LWQHVWRRH 164 (720)
Q Consensus 156 ~l~~vlr~~ 164 (720)
.|..++...
T Consensus 816 ~l~~~~~~~ 824 (968)
T TIGR02956 816 MIAVILAGG 824 (968)
T ss_pred HHHHHhccc
Confidence 999987643
No 14
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.71 E-value=5.2e-16 Score=158.34 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=111.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
+++||||||++.++..+..+|... +|. |..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++.. +.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~gle~~~~l~~~~--~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGRGINLLHELVQAH--YPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCC
Confidence 479999999999999999999874 785 5669999999999976 4599999999999999999999999865 568
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
+||++|++.+...+.++++.||.+||.||++.++|..+|++++.+...+
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~ 128 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHML 128 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776654
No 15
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.69 E-value=5.1e-16 Score=193.18 Aligned_cols=160 Identities=20% Similarity=0.337 Sum_probs=134.1
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccc-cccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVV-RTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGL 75 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~-~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~ 75 (720)
+|||+|+|.|.+| |+|.||.......... ............++||||||++..+..+..+|+..||+|..+.++.
T Consensus 913 ~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~ 992 (1197)
T PRK09959 913 NMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGV 992 (1197)
T ss_pred HcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHH
Confidence 4899999999986 9999997543211111 0011111122357999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~ 155 (720)
+|++.+.. ..|||||+|+.||+++|+++++.|++.. +.+|||++|++.+.....++++.|+++||.||++.++|..
T Consensus 993 ~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~i~~~~--~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~ 1068 (1197)
T PRK09959 993 QALHKVSM--QHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKT 1068 (1197)
T ss_pred HHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHH
Confidence 99999976 4599999999999999999999999865 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 042954 156 LWQHVWRRH 164 (720)
Q Consensus 156 ~l~~vlr~~ 164 (720)
.|+.+....
T Consensus 1069 ~l~~~~~~~ 1077 (1197)
T PRK09959 1069 HLSQLHQVA 1077 (1197)
T ss_pred HHHHHhhcc
Confidence 998876543
No 16
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.69 E-value=8.8e-16 Score=186.78 Aligned_cols=120 Identities=25% Similarity=0.429 Sum_probs=112.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+|+|+++++.||+.. +.+||
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG~el~~~ir~~~--~~~pI 876 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDGYRLTQRLRQLG--LTLPV 876 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 4689999999999999999999999999999999999999987 4599999999999999999999999876 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|++|+....+...+|++.|+++||.||++..+|...|..+.++.
T Consensus 877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998876543
No 17
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.68 E-value=9.5e-16 Score=184.94 Aligned_cols=123 Identities=23% Similarity=0.351 Sum_probs=113.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++..+..++.+|...||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+....+.+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 4689999999999999999999999999999999999999976 45999999999999999999999998655578999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+...+|++.|+++||.||++..+|...|+.++....
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 789 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGPK 789 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccccc
Confidence 999999999999999999999999999999999999998876543
No 18
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-15 Score=139.51 Aligned_cols=119 Identities=31% Similarity=0.521 Sum_probs=105.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGL-AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~-eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
..+||||||++..+..+..+|...||.|..+.++. +|++.++... .||+||+|+.||+++|++++++++... +.+|
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~--~~~p 81 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARG--PNIP 81 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCC--CCCC
Confidence 46999999999999999999999999999999995 9999997631 499999999999999999999999873 6788
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE-LRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~e-L~~~l~~vlr 162 (720)
||++|++.......+++..|+.+|+.||+...+ |...+.+.+.
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 999999999887888899999999999977666 7777775544
No 19
>PLN03029 type-a response regulator protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=156.18 Aligned_cols=124 Identities=30% Similarity=0.561 Sum_probs=110.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCC------------------CCceEEEEeccCCCCCH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRP------------------HSIDLVLTEVELPSISG 102 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~------------------~~pDLVLlDv~MP~~dG 102 (720)
+++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ..+||||+|+.||+++|
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 579999999999999999999999999999999999999886421 13689999999999999
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+++++.|++......+|||++|+........+|++.||.+||.||+...+|..++.++++..
T Consensus 88 ~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 88 YDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999875446899999999999999999999999999999999999988877766544
No 20
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.64 E-value=5.7e-15 Score=148.57 Aligned_cols=123 Identities=26% Similarity=0.407 Sum_probs=113.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|..+||||||++.++..+...|+..||++..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~p 78 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIP 78 (229)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCC
Confidence 45699999999999999999999889999999999999998876 4599999999999999999999999764346899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
||++|++.+.....++++.||++||.||++..+|...++.++++.
T Consensus 79 vi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 79 VVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988763
No 21
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.64 E-value=5.3e-15 Score=148.19 Aligned_cols=119 Identities=26% Similarity=0.419 Sum_probs=111.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+++|+++++.+++.. +.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 389999999999999999999999999999999999998876 4599999999999999999999999865 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|+..+.+....+++.||+|||.||++..+|...++.++++.
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 22
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.64 E-value=2e-15 Score=167.28 Aligned_cols=124 Identities=28% Similarity=0.507 Sum_probs=118.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||+...+..++.+|...||.|..+.++.+|+..+.+. .||+||+|+.||++||+++++++|.......+||
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipi 209 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIPI 209 (435)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhcccccccccE
Confidence 57999999999999999999999999999999999999999874 5999999999999999999999999998889999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++++.++.....+||+.|++|||.||+...+|...++..+++.++
T Consensus 210 i~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 210 ILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999887765
No 23
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.64 E-value=5.7e-15 Score=146.69 Aligned_cols=124 Identities=30% Similarity=0.441 Sum_probs=113.3
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|..+||||||++.++..+...|+..||++..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ 78 (226)
T TIGR02154 1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIP 78 (226)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCC
Confidence 45789999999999999999999889999999999999998876 4599999999999999999999998764346799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|++.+.....++++.||++||.||++.++|...++.++++..
T Consensus 79 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (226)
T TIGR02154 79 IIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIR 124 (226)
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999887753
No 24
>PRK09483 response regulator; Provisional
Probab=99.64 E-value=1.3e-14 Score=144.23 Aligned_cols=124 Identities=23% Similarity=0.394 Sum_probs=113.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++||||||++..+..+..+|+.. +|.++ .+.++.+++..+.. ..|||||+|+.||+++|+++++.|++.. +.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGGLEATRKILRYT--PDV 76 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 579999999999999999999875 78876 68999999999876 4599999999999999999999998765 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
|||++|.+.+......++..|+.+|+.||++.++|..+++.++++..++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~ 126 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIA 126 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccC
Confidence 99999999999999999999999999999999999999999999877643
No 25
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.64 E-value=6.2e-15 Score=147.64 Aligned_cols=120 Identities=27% Similarity=0.379 Sum_probs=110.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|.+||||||++..+..+...|+..||++..+.++.+++..+.. ..||+||+|+.||+++|+++++.|++. +.+||
T Consensus 1 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pv 75 (225)
T PRK10529 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPV 75 (225)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCE
Confidence 3689999999999999999999999999999999999988765 459999999999999999999999964 57899
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+...++++.||++||.||++..+|...++.++++..
T Consensus 76 i~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~~ 120 (225)
T PRK10529 76 IVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS 120 (225)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999887653
No 26
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.63 E-value=7e-15 Score=151.21 Aligned_cols=122 Identities=20% Similarity=0.332 Sum_probs=108.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++||||||++.++..++.+|... +|.++ .+.++.++++.+......|||||+|+.||+++|+++++.|++.. +.+
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKS 78 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCC
Confidence 479999999999999999999864 77655 58999999998853224599999999999999999999999875 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|||++|+..+.....+++..|+.+||.||++.++|..+|..++...
T Consensus 79 ~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred CEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998865543
No 27
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.63 E-value=8.8e-15 Score=146.15 Aligned_cols=121 Identities=23% Similarity=0.384 Sum_probs=111.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|.++||||||++..+..+...|...||+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 1 ~~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~~ 75 (221)
T PRK10766 1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSR---STVG 75 (221)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCC
Confidence 55799999999999999999999999999999999999998876 459999999999999999999999975 4789
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++++..+.....++++.||+|||.||++..+|...+..++++..
T Consensus 76 ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 76 IILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred EEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999887644
No 28
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.63 E-value=1.6e-14 Score=145.81 Aligned_cols=123 Identities=12% Similarity=0.239 Sum_probs=111.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHcCCCCceEEEEeccCCC---CCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-R-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPS---ISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-e-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~---~dGieLL~~Ir~~~~~p 116 (720)
++||||||++.++..++.+|...++ . +..+.++.++++.+.. ..|||||+|+.||+ .+|++++++|+... +
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~--~ 79 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHF--P 79 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC--C
Confidence 6999999999999999999987654 4 5568999999998876 45999999999999 59999999999765 7
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
.+|||++|.+.+.....++++.||++||.||++.++|..+|+.++.+..+++
T Consensus 80 ~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~ 131 (216)
T PRK10840 80 SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTP 131 (216)
T ss_pred CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecC
Confidence 8999999999999999999999999999999999999999999999887654
No 29
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.63 E-value=1e-14 Score=144.75 Aligned_cols=120 Identities=26% Similarity=0.401 Sum_probs=111.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++..+..+..+|+..||.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 489999999999999999999999999999999999998876 4599999999999999999999999865 779999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|++.+.....++++.||.+||.||++.++|...++.++++..
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ 120 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999887654
No 30
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.63 E-value=9.6e-15 Score=146.69 Aligned_cols=118 Identities=24% Similarity=0.490 Sum_probs=110.5
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.+++.. +.+|||+
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii~ 77 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILL 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEEE
Confidence 89999999999999999999999999999999999998866 4599999999999999999999999865 7899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+|++.+.+...++++.||++||.||++..+|...++.++++.
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988754
No 31
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=3.6e-15 Score=141.88 Aligned_cols=113 Identities=18% Similarity=0.325 Sum_probs=107.1
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
..||||||..++..|.+.|+.-||.|.+|.+.++|+..++.. .|+-.++|+.|.+.+|+++++.|++.. +++.|||
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~PayAvvDlkL~~gsGL~~i~~lr~~~--~d~rivv 86 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA--PPAYAVVDLKLGDGSGLAVIEALRERR--ADMRIVV 86 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCceEEEEeeecCCCchHHHHHHHhcC--CcceEEE
Confidence 699999999999999999999999999999999999999874 499999999999999999999999987 8999999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
+|+|.+..++++|++.||.+||.||.+.+++..++..
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 9999999999999999999999999999988876654
No 32
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=1.5e-14 Score=144.96 Aligned_cols=120 Identities=30% Similarity=0.433 Sum_probs=110.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|.+||||||++..+..+...|+..||.+..+.++.+++..+.. .||+||+|+.||+++|+++++.|++.. + +||
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~i 74 (232)
T PRK10955 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPV 74 (232)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcE
Confidence 3689999999999999999999999999999999999998752 499999999999999999999999865 4 899
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+.....++++.||++||.||++..+|...++.++++...
T Consensus 75 i~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 120 (232)
T PRK10955 75 IMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 (232)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999887653
No 33
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.61 E-value=1.8e-14 Score=143.50 Aligned_cols=121 Identities=28% Similarity=0.435 Sum_probs=111.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+.||+.+|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~i 78 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAFH--PALPV 78 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 4699999999999999999999899999999999999998875 4599999999999999999999999865 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+......++..||++||.||++..+|...++.++++..
T Consensus 79 i~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (228)
T PRK11083 79 IFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVK 123 (228)
T ss_pred EEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccc
Confidence 999999998889999999999999999999999999999887654
No 34
>PRK11173 two-component response regulator; Provisional
Probab=99.61 E-value=1.7e-14 Score=146.61 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=110.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+...|+..||+|..+.++.+++..+.. ..||+||+|+.||+++|+++++.|++. +.+|||
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pii 78 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGKNGLLLARELREQ---ANVALM 78 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCCCEE
Confidence 589999999999999999999999999999999999999876 459999999999999999999999974 468999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|++.+......+++.||++||.||++..+|...++.++++.
T Consensus 79 ~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988864
No 35
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.61 E-value=1.9e-14 Score=142.84 Aligned_cols=119 Identities=27% Similarity=0.400 Sum_probs=110.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++..+..+..+|...||++..+.++.+++..+.. ..|||||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~~--~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREKG--QREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 489999999999999999999989999999999999998865 4599999999999999999999999865 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|++.+.+...+++..||.+|+.||++.++|..+++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999987754
No 36
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.60 E-value=2.7e-14 Score=172.10 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=132.2
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCccccc-ccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVR-TRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGL 75 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~-~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~ 75 (720)
.|||+|+|.|.+| |+|+||........... ............+||||||++..+..+...|...||+|+.+.++.
T Consensus 652 ~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~ 731 (828)
T PRK13837 652 AHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLA 731 (828)
T ss_pred HCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHH
Confidence 3899999999876 99999976533211110 011111112346899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~ 155 (720)
+|++.+......||+||+ .||+++|+++++.|+... +.+|||++|+........+++..| ++||.||++..+|..
T Consensus 732 ~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~--~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~ 806 (828)
T PRK13837 732 AAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA--PTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAY 806 (828)
T ss_pred HHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC--CCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHH
Confidence 999998754345899999 799999999999999876 789999999999999999999999 999999999999999
Q ss_pred HHHHHHhhcc
Q 042954 156 LWQHVWRRHS 165 (720)
Q Consensus 156 ~l~~vlr~~~ 165 (720)
+|+.+++...
T Consensus 807 ~l~~~l~~~~ 816 (828)
T PRK13837 807 ALRTALATAR 816 (828)
T ss_pred HHHHHHcccC
Confidence 9999887543
No 37
>PRK15115 response regulator GlrR; Provisional
Probab=99.60 E-value=1.5e-14 Score=162.01 Aligned_cols=185 Identities=21% Similarity=0.309 Sum_probs=136.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~~--~~~pv 80 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKVQ--PGMPV 80 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 4699999999999999999999999999999999999999876 4599999999999999999999999865 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCCcccc-hh---hhhcccCccccccccccCCc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQN-LH---DVYHKGGAISENNMASSHSS 196 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~~~~~-~~---~~~~~~~~~~el~~~s~~~~ 196 (720)
|++|++.+.....+++..||.+||.||++..+|...|..+++............ +. ....................
T Consensus 81 Ivlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~~~~~~~~~~~~lig~s~~~~~~~~~~~~~a~~~~~v 160 (444)
T PRK15115 81 IILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARMVAQSDVSV 160 (444)
T ss_pred EEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhhhcccccchhhcccccCHHHHHHHHHHHhhccCCCeE
Confidence 999999999999999999999999999999999999999887543211000000 00 00000000000001122233
Q ss_pred hhhhhhhhhhH-HHHhhhhhccCCCCcchhhhhh
Q 042954 197 DYAASSQKNKG-SEKVSDAQSSRTSSPYLEAESA 229 (720)
Q Consensus 197 ~~~~~~~~~ke-i~~ls~arS~~T~~~~v~~~g~ 229 (720)
...+..+..|+ +++..+..+.+...||+.++..
T Consensus 161 li~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~ 194 (444)
T PRK15115 161 LINGQSGTGKEILAQAIHNASPRASKPFIAINCG 194 (444)
T ss_pred EEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCC
Confidence 44566677777 7777776666554666666543
No 38
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.60 E-value=3.1e-14 Score=144.33 Aligned_cols=121 Identities=22% Similarity=0.365 Sum_probs=112.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..+...|...||++..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~~--~~~pi 80 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQN--NPTPI 80 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 3589999999999999999999999999999999999998876 4599999999999999999999999865 68999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++++..+......++..||++||.||++.++|...++.++++..
T Consensus 81 i~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~~ 125 (239)
T PRK09468 81 IMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQA 125 (239)
T ss_pred EEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999887643
No 39
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.60 E-value=2.8e-14 Score=144.95 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=110.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|.+||||||++..+..+...|+..||.+..+.++.+|+..+.. ..||+||+|+.||+++|+++++.|++. ..+||
T Consensus 1 m~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~~~~~ir~~---~~~pi 75 (240)
T PRK10701 1 MNKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDGMTICRDLRPK---WQGPI 75 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCE
Confidence 3589999999999999999999999999999999999999876 459999999999999999999999984 35799
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++++..+.....+++..||+|||.||++..+|...++.++++..
T Consensus 76 i~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~~ 120 (240)
T PRK10701 76 VLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 (240)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence 999999998888999999999999999999999999999887643
No 40
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.59 E-value=3.3e-14 Score=142.54 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=110.7
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCCCCeE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p~ipV 120 (720)
+||||||++.++..+...|+..||++..+.++.+++..+.. ..||+||+|+.||+ .+|+++++.|+... +.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 79999999999999999999999999999999999998876 45999999999997 58999999999865 67999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|++.+......+++.||++||.||++..+|...++.++++...
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRAEA 123 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999887543
No 41
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.59 E-value=3.6e-14 Score=144.93 Aligned_cols=119 Identities=22% Similarity=0.372 Sum_probs=107.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+...|+..||.|..+.++.++++.+.. ..|||||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii 76 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPII 76 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEE
Confidence 489999999999999999999999999999999999998876 459999999999999999999999875 468999
Q ss_pred EEeccC-CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHD-SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~-d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|+.. +.....++++.||++||.||++..+|...++.++++..
T Consensus 77 ~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~~ 121 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVRP 121 (241)
T ss_pred EEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999854 66677899999999999999999999999999887643
No 42
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.59 E-value=4.6e-15 Score=154.15 Aligned_cols=118 Identities=21% Similarity=0.412 Sum_probs=107.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++|+|||||..+...|..+|.+.|..+..|....+|++.|+. ..||||++|+.||+|+|++|+++++... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 489999999999999999999999888889999999999987 5699999999999999999999999987 899999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|+|. +....++..-+.|||.||++++.|..+|.++.+.-.
T Consensus 77 fIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve 118 (361)
T COG3947 77 FISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVE 118 (361)
T ss_pred EEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhcccc
Confidence 999998 455667777789999999999999999999875544
No 43
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.58 E-value=2.9e-14 Score=160.92 Aligned_cols=119 Identities=25% Similarity=0.442 Sum_probs=111.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..|||||+|+.||+++|+++++.|+... +.+|||
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dgl~~l~~ir~~~--~~~pvI 79 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPVI 79 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCHHHHHHHHHhhC--CCCeEE
Confidence 589999999999999999999999999999999999999976 4599999999999999999999999865 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|++.+.+....+++.|+.+||.||++..+|...|..++...
T Consensus 80 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887643
No 44
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.58 E-value=2.1e-14 Score=160.29 Aligned_cols=120 Identities=31% Similarity=0.504 Sum_probs=112.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..+..+|+..||.|..+.++.+++..+.. ..|||||+|+.||+++|+++++.|++.. +.+||
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~~--~~~~v 80 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKALN--PAIPV 80 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 5799999999999999999999999999999999999999876 4599999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|++|++.+.+...++++.|+.+||.||++.++|...+..+++..
T Consensus 81 i~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 81 LIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887653
No 45
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.57 E-value=7.9e-14 Score=138.97 Aligned_cols=119 Identities=27% Similarity=0.477 Sum_probs=109.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.|++. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 389999999999999999999999999999999999998876 459999999999999999999999875 468999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|+..+.+...++++.||++||.||++..+|...++.++++..
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~ 119 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999887643
No 46
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.57 E-value=8.9e-14 Score=140.17 Aligned_cols=120 Identities=26% Similarity=0.486 Sum_probs=110.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..+...|...+|.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~---~~~~i 80 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVPI 80 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcE
Confidence 4699999999999999999999989999999999999998876 459999999999999999999999974 57999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.....++++.||++||.||++.++|...++.++++..
T Consensus 81 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~ 125 (240)
T CHL00148 81 IMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRTN 125 (240)
T ss_pred EEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999887654
No 47
>PRK13557 histidine kinase; Provisional
Probab=99.57 E-value=9.2e-14 Score=156.62 Aligned_cols=158 Identities=21% Similarity=0.269 Sum_probs=132.1
Q ss_pred CCCEEEEEecCC----cEEEeccCcCCCcccccccccc--cccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH
Q 042954 2 KMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWES--FLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGL 75 (720)
Q Consensus 2 mgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~--~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~ 75 (720)
|||+|+|.|.+| |+|+||.......... .+.. .....+.+||||||++..+..+..+|+..||.+..+.++.
T Consensus 372 ~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~--~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~ 449 (540)
T PRK13557 372 SGGAVRIYSEVGEGTTVRLYFPASDQAENPEQ--EPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGR 449 (540)
T ss_pred CCCEEEEEecCCCceEEEEEeeCCCCccCCCC--CCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHH
Confidence 799999999986 9999997654322221 1211 1112356999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHH
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~ 154 (720)
++++.+... ..|||||+|+.||+ ++|+++++.|++.. +.+|||++|.+.+......++..|+.+|+.||++.++|.
T Consensus 450 ~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~--~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~ 526 (540)
T PRK13557 450 EALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQ--PKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELA 526 (540)
T ss_pred HHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhC--CCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHH
Confidence 999988542 24999999999997 99999999999865 789999999999888888899999999999999999999
Q ss_pred HHHHHHHhhc
Q 042954 155 NLWQHVWRRH 164 (720)
Q Consensus 155 ~~l~~vlr~~ 164 (720)
..++.++...
T Consensus 527 ~~l~~~~~~~ 536 (540)
T PRK13557 527 RRVRMVLDGP 536 (540)
T ss_pred HHHHHHhcCC
Confidence 9998877643
No 48
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.57 E-value=7.7e-14 Score=137.40 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=111.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
++||||||++..+..+...|+..||.+. .+.++.++++.+.. ..|||||+|+.||+++|+++++.++... +.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 4899999999999999999998899987 59999999999876 4599999999999999999999999865 67899
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+.....+++..||.+|+.||++.++|..+++.++++..+
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~ 122 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 122 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999999999999999999999887654
No 49
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.56 E-value=3.4e-14 Score=159.19 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=106.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC-----CCHHHHHHHHHhccCCCCC
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS-----ISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-----~dGieLL~~Ir~~~~~p~i 118 (720)
||||||++.++..+...| .||+|..+.++.+|++.+.. ..|||||+|+.||+ ++|+++++.|++.. +.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 699999999999999988 78999999999999999976 45999999999995 89999999999876 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|||++|++.+.+...+|++.||+|||.||++.++|..+|+.+++..
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999998887654
No 50
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.56 E-value=1.1e-13 Score=137.00 Aligned_cols=119 Identities=28% Similarity=0.460 Sum_probs=110.4
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
||||||++..+..+...|+..||.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHccC--CCCcEEEE
Confidence 6899999999999999999999999999999999998876 4599999999999999999999999765 78999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 124 SLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|+..+.....+++..||++|+.||++..+|...++.++++...
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 119 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHS 119 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999998877554
No 51
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.55 E-value=5.9e-14 Score=157.47 Aligned_cols=121 Identities=25% Similarity=0.463 Sum_probs=111.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..+...|...||+|..+.++.+|+..+.. ..|||||+|+.||+++|+++++.|+... +.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~g~~ll~~i~~~~--~~~pv 79 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPV 79 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 3589999999999999999999999999999999999999876 4599999999999999999999999865 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+...++++.|+.|||.||++.++|...++.++....
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~ 124 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccccc
Confidence 999999999999999999999999999999999999988776443
No 52
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.55 E-value=2.7e-14 Score=170.65 Aligned_cols=121 Identities=22% Similarity=0.469 Sum_probs=112.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
...+||||||+...+.+.+.+|++.|.+|..+.+|.||++.+. .++.||+||+|+.||.|||+++.++||+... ..+|
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~p 742 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLP 742 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHHHHHHHHhhc-CCCC
Confidence 3679999999999999999999999999999999999999997 3467999999999999999999999998865 6899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
||.||+..+.....+|++.|.++||.||++.+.|...++..+.
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888887653
No 53
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.54 E-value=1.5e-13 Score=142.75 Aligned_cols=121 Identities=18% Similarity=0.322 Sum_probs=108.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.++||||||++..+..+..+|... ++.++ .+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 369999999999999999999864 56655 59999999999976 459999999999999999999999987633448
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|||++|++.......++++.|+.+||.||++..+|...|+.++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988764
No 54
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.54 E-value=3.4e-14 Score=156.74 Aligned_cols=121 Identities=24% Similarity=0.379 Sum_probs=109.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
...+||||||++..+..+..+|.. .+.+..+.++.+|+..+.. ..|||||+|+.||+++|+++++.|++....+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 357899999999999999999965 4777789999999998865 5599999999999999999999999866668999
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|++.+.+.+.+|++.||.|||.||++.++|...|....+.
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888876654
No 55
>PRK14084 two-component response regulator; Provisional
Probab=99.52 E-value=2.6e-13 Score=139.22 Aligned_cols=117 Identities=19% Similarity=0.391 Sum_probs=103.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG-Y-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g-y-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++||||||++..+..+..+|...+ + .+..+.++.+++..+.. ..|||||+|+.||+++|+++++.|++.. +.++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDESGIELAAKIQKMK--EPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCE
Confidence 489999999999999999998865 5 46679999999999876 4599999999999999999999999865 6778
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
||++|++.. ...++++.||.+||.||++.++|..+++.+++..
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 999998764 5678999999999999999999999999987654
No 56
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.51 E-value=3.2e-13 Score=132.17 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=106.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++||||||++..+..+..+|... ++. +..+.++.++++.+.. ..|||||+|+.||+++|+++++.++ +.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~-----~~~ 73 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLP-----KGM 73 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHc-----cCC
Confidence 469999999999999999999754 666 4569999999999875 4599999999999999999999985 257
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|||++|...+.+....++..||++|+.||++.++|..+|+.++++..+
T Consensus 74 ~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~ 121 (196)
T PRK10360 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCY 121 (196)
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCee
Confidence 999999999999999999999999999999999999999999987544
No 57
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.51 E-value=4.9e-13 Score=131.53 Aligned_cols=121 Identities=19% Similarity=0.345 Sum_probs=110.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+||||||++..+..+..+|... ++.+. .+.++.++++.+.. ..|||||+|+.||+++|+++++.++... +.+|
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~--~~~~ 79 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQIQ--STVK 79 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCc
Confidence 58999999999999999999876 58876 58899999998876 4599999999999999999999999865 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|++.+.....+++..|+.+|+.||++.++|...|+.++++...
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~ 126 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTF 126 (210)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCce
Confidence 99999999999999999999999999999999999999999887654
No 58
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.49 E-value=4.9e-13 Score=136.15 Aligned_cols=116 Identities=20% Similarity=0.422 Sum_probs=100.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG-YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g-yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++||||||++..+..+..+|+..+ +.+ ..+.++.++++.+.. ..|||||+|+.||+++|+++++.++.. ...
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~ 75 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISGLELVGMLDPE---HMP 75 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHhccc---CCC
Confidence 5799999999999999999998887 444 458999999998876 459999999999999999999999642 345
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+||++|++. +.+.++++.||.+||.||++.++|..++.++.+.
T Consensus 76 ~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 76 YIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 788999876 4678999999999999999999999999988654
No 59
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.49 E-value=9e-13 Score=130.71 Aligned_cols=121 Identities=26% Similarity=0.451 Sum_probs=110.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++..+..+..+|...++.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.++... +.+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKRG--QTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 379999999999999999999899999999999999988865 4599999999999999999999999875 679999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
++|...+.....++++.|+++|+.||++..+|...++.++++...
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~ 121 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAG 121 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999998876543
No 60
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.48 E-value=7.2e-13 Score=146.26 Aligned_cols=124 Identities=24% Similarity=0.352 Sum_probs=113.2
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+.+||||||++..+..+...|...+|.|..+.++.+++..+.. ..||+||+|+.||+.+|++++++|++....+.+|
T Consensus 1 M~~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIP 78 (457)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 34689999999999999999998889999999999999999976 4599999999999999999999999865446799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|+..+.....++++.||++||.||++.++|..+++.+++...
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (457)
T PRK09581 79 VVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKM 124 (457)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877554
No 61
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.47 E-value=6.7e-13 Score=149.36 Aligned_cols=117 Identities=26% Similarity=0.466 Sum_probs=109.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..|||||+|+.||+++|+++++.|++.. +.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g~~ll~~l~~~~--~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDGLDLLPQIKKRH--PQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Confidence 6899999999999999999999999999999999998876 4599999999999999999999999865 78999999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 124 SLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|++.+.....++++.|+.+||.||++.++|...++.++...
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887643
No 62
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.47 E-value=1.8e-12 Score=130.59 Aligned_cols=119 Identities=23% Similarity=0.364 Sum_probs=109.7
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+..+|...||.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRRF---SDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 489999999999999999999999999999999999998876 459999999999999999999999863 578999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+++...+......+++.||.+|+.||++..+|...++.++++..
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~ 129 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhcc
Confidence 99999998888999999999999999999999999999887654
No 63
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.46 E-value=4.3e-12 Score=124.53 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=109.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++++||||||++..+..+...|+. .+|.+. .+.++.+++..+.. ..||+||+|+.||+++|+++++.+++.. +.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~~--~~ 80 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRDG--VT 80 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 357999999999999999999975 478876 58999999998866 4599999999999999999999999865 67
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
+|+|+++.+.+......+++.|+++|+.||++..+|...++.++++...
T Consensus 81 ~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~ 129 (215)
T PRK10403 81 AQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKV 129 (215)
T ss_pred CeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCee
Confidence 8999999999988999999999999999999999999999998876543
No 64
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.45 E-value=6.1e-13 Score=136.33 Aligned_cols=121 Identities=9% Similarity=0.111 Sum_probs=102.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHH-HHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALL-TLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL-~~Ir~~~~~p~i 118 (720)
+.+|+||||++..+.+|+.+|... +.| ..+.++.+|+..+. .|||||+|+.||+++|++++ +.|++.. |.+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~-~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~--p~~ 82 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKN--NNI 82 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHh-CCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhC--CCC
Confidence 468999999999999999999843 554 45789999988642 38999999999999999997 5688765 889
Q ss_pred eEEEEeccCCHHHHHHHHH--cCCcEEEeCCCCHHHHHHHHHHHHhhccccCCC
Q 042954 119 PVIMMSLHDSISMVLKCML--KGAADFLIKPVRRNELRNLWQHVWRRHSLLGGH 170 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~--~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~ 170 (720)
+||++|++.+ ....++. .||.+||.|+.+.++|..+|+.++++..++.+.
T Consensus 83 ~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~ 134 (216)
T PRK10100 83 KILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQK 134 (216)
T ss_pred cEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHH
Confidence 9999999986 3455565 499999999999999999999999999887544
No 65
>PRK13435 response regulator; Provisional
Probab=99.44 E-value=2.3e-12 Score=121.44 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=104.5
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCC
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVC 115 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~ 115 (720)
+.++++|||+|+++.....+...|...||.+. .+.++.++++.+.. ..|||||+|+.|+ +.+|+++++.++..
T Consensus 2 ~~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~~~~~~~~~l~~~--- 76 (145)
T PRK13435 2 FLRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGPTGVEVARRLSAD--- 76 (145)
T ss_pred CcccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCCcHHHHHHHHHhC---
Confidence 34568999999999999999999998899987 68999999998865 4599999999998 58999999999764
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
+.+|||+++...+ ...++..|+.+||.||++..+|...|++++.+...
T Consensus 77 ~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 77 GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 4789999998654 24678899999999999999999999999876654
No 66
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.44 E-value=7.3e-12 Score=123.26 Aligned_cols=122 Identities=18% Similarity=0.313 Sum_probs=109.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
..+||||||++..+..+..+|... ++.++ .+.++.+++..+.. ..||+||+|+.||+++|+++++.++... +.+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~~~~~~~~l~~~~--~~~ 81 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKS--LSG 81 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCC
Confidence 368999999999999999999765 57654 58999999998876 4599999999999999999999999865 678
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|+|+++...+......++..|+.+|+.||++..+|...++.++++...
T Consensus 82 ~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~ 129 (216)
T PRK10651 82 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMV 129 (216)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcc
Confidence 999999999999999999999999999999999999999999987654
No 67
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.44 E-value=1.7e-12 Score=125.61 Aligned_cols=119 Identities=26% Similarity=0.430 Sum_probs=110.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+...|...+|.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~~--~~~~ii 79 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKARG--SPLPVI 79 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 689999999999999999999999999999999999988865 4599999999999999999999999765 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|...+......++..|+.+|+.||+...+|...++.+++..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887754
No 68
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.43 E-value=8.6e-12 Score=110.10 Aligned_cols=121 Identities=21% Similarity=0.497 Sum_probs=108.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.++||++|+++.....+...|...++. +..+.++.+++..+.. ..+|+||+|+.+++++|+++++.++.....+.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 368999999999999999999988884 6778999999998865 4599999999999999999999999865446789
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+|+++.........+++..|+.+|+.||++..+|...++.++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999988764
No 69
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.43 E-value=1.9e-12 Score=140.53 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=100.2
Q ss_pred cEEEEEecCHHHHHHHHHHHH-hCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLR-KCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~-~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++||||||++..+..+..+|. ..+|+++ .+.++.+|++.+.. ..|||||+|+.||+++|++++++|+... .+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~e~l~~l~~~~---~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGVEATRRIMAER---PCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHHHHHHHHHHHC---CCc
Confidence 489999999999999999994 5688887 58999999999976 4599999999999999999999998853 489
Q ss_pred EEEEeccCC--HHHHHHHHHcCCcEEEeCCC---------CHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDS--ISMVLKCMLKGAADFLIKPV---------RRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d--~e~~~~Al~~GA~dYL~KP~---------~~~eL~~~l~~vlr~ 163 (720)
||++++... .....++++.|+.+||.||+ ..++|...|+.+.+.
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~ 130 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRL 130 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhc
Confidence 999998754 56778999999999999999 556677777766543
No 70
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.42 E-value=1.5e-12 Score=132.64 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=96.7
Q ss_pred HHHHHHHHHhC---CCEEEEECCHHHHHHHHHcCCCCceEEE---EeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 54 RQIISALLRKC---GYRVAAVPDGLAAWETLKCRPHSIDLVL---TEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 54 r~~L~~lL~~~---gyeV~~A~sg~eAle~L~~~~~~pDLVL---lDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
|.+++.+|... +|.|..+.++.++++.+.. ..||+|| +|+.||+++|++++++|++.. |.+|||++|++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIKF--PRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHHC--CCCCEEEEeCCC
Confidence 67888999753 5666789999999998865 4599998 688899999999999999876 899999999998
Q ss_pred CHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 128 SISMVLKCM-LKGAADFLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 128 d~e~~~~Al-~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
+...+..++ +.||.+||.||++.++|..+|+.++++..++.
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~ 120 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQAT 120 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccC
Confidence 887777766 79999999999999999999999999987754
No 71
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.42 E-value=5.9e-12 Score=128.09 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=102.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC--CEE-EEECCHHHHHHHHHcCCCCceEEEEecc--CCCCCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG--YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVE--LPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g--yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~--MP~~dGieLL~~Ir~~~~~p 116 (720)
+.||||||++.++.+++.+|...+ +.+ ..+.++.++++.+.. ..|||||+|+. |++.+|.+++++|++.. |
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~--p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQH--P 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHHC--C
Confidence 369999999999999999998654 344 458999999998865 45999999966 88889999999999876 8
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAAD-FLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~d-YL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
.++||++|++.+..... ++..|+.. |+.|+.+.++|..+|+.++.+..++.
T Consensus 77 ~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~ 128 (207)
T PRK15411 77 NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTIT 128 (207)
T ss_pred CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccC
Confidence 89999999998876543 55556444 89999999999999999999887653
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.41 E-value=3.6e-12 Score=139.18 Aligned_cols=118 Identities=32% Similarity=0.497 Sum_probs=99.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++++||||||++..+..+..+|... +|.++ .+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dgle~l~~i~~~~--~- 76 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDGLDALEKIMRLR--P- 76 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCChHHHHHHHHHhC--C-
Confidence 4579999999999999999999876 78887 79999999998876 4599999999999999999999999875 4
Q ss_pred CeEEEEeccC--CHHHHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHHh
Q 042954 118 IPVIMMSLHD--SISMVLKCMLKGAADFLIKPVRR---------NELRNLWQHVWR 162 (720)
Q Consensus 118 ipVIvLTs~~--d~e~~~~Al~~GA~dYL~KP~~~---------~eL~~~l~~vlr 162 (720)
+|||++|++. ......++++.|++|||.||+.. .+|...++.+.+
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~ 132 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAAR 132 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhh
Confidence 9999999764 34667899999999999999943 445555555433
No 73
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.41 E-value=6.8e-12 Score=121.98 Aligned_cols=122 Identities=17% Similarity=0.332 Sum_probs=109.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.++||||||++..+..+..+|... +|.++ .+.++.+++..+.. ..||+||+|+.|++++|+++++.+++.. +.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~ 78 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQRW--PAM 78 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 479999999999999999999875 47755 68999999988765 4599999999999999999999999865 778
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|+|++|+..+......++..|+.+|+.||++..+|...++.++++...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 126 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRY 126 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCce
Confidence 999999999999999999999999999999999999999998876544
No 74
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.38 E-value=3.1e-12 Score=150.22 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=105.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++.++..+..+|...||.|..+.++.+++..+.. ..|||||+|+.||+++|++++++|+... +.+|||
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~~~--~~~piI 83 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQTT--AVPPVV 83 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 699999999999999999998889999999999999998875 4599999999999999999999999865 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCH--HHHHHHHHHHHhh
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRR--NELRNLWQHVWRR 163 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~--~eL~~~l~~vlr~ 163 (720)
++|++.+.+...+++..|+.+||.||... ..|...++.++..
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999754 3566666666544
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.36 E-value=8.7e-12 Score=134.92 Aligned_cols=104 Identities=30% Similarity=0.478 Sum_probs=92.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG-YR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g-ye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
++|||||||...+|..|+++|...+ .+ |..+.|+.+|++.++. ..||||++|+.||.|||+++|+.|+.. ..+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 4799999999999999999999987 55 4559999999999987 669999999999999999999999876 468
Q ss_pred eEEEEeccCC--HHHHHHHHHcCCcEEEeCCCC
Q 042954 119 PVIMMSLHDS--ISMVLKCMLKGAADFLIKPVR 149 (720)
Q Consensus 119 pVIvLTs~~d--~e~~~~Al~~GA~dYL~KP~~ 149 (720)
||||+++... .+...+|++.||.||+.||..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9999987654 567889999999999999964
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.25 E-value=4.5e-11 Score=118.84 Aligned_cols=124 Identities=23% Similarity=0.369 Sum_probs=105.9
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
..|.++||++||++..+..+...|...||.++. +.++.++.+.... ..|||||+|+.||..|-++-+.+..+. +
T Consensus 2 ~~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~rd~~e~~~~~~~~---~ 76 (194)
T COG3707 2 AAMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPRRDIIEALLLASEN---V 76 (194)
T ss_pred CccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCCccHHHHHHHhhcC---C
Confidence 346789999999999999999999999998776 7788888887776 569999999999998844444444332 5
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
..|||++|++.+.+.+.++++.|+.+||+||++...|+..|.-+..++..
T Consensus 77 ~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 77 ARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred CCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999888777654
No 77
>PRK09191 two-component response regulator; Provisional
Probab=99.25 E-value=1.4e-10 Score=119.82 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=101.4
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ 117 (720)
+..+||||||++..+..+...|+..|+.+. .+.++.+++..+.. ..|||||+|+.||+ ++|+++++.++... .
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~ 210 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTF---D 210 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhC---C
Confidence 456899999999999999999998899988 68899999999876 45999999999995 89999999998754 6
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+|||++|+..+.... +...|+.+||.||++.++|...|+.++...
T Consensus 211 ~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 211 VPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 899999998765443 344678899999999999999999876653
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.22 E-value=2.2e-10 Score=96.15 Aligned_cols=112 Identities=29% Similarity=0.518 Sum_probs=100.9
Q ss_pred EEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 45 LLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 45 LIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
||+|+++..+..+...|...|+.+..+.+..+++..+.. ..+|+||+|+.+++.+|+++++.++... +.+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDGLELLRRIRKRG--PDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCchHHHHHHHHHhC--CCCCEEEEE
Confidence 578999999999999999889999999999999998876 4599999999999999999999998874 678999999
Q ss_pred ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 125 LHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 125 s~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
..........++..|+.+|+.||++..+|...++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 888888888999999999999999999998887653
No 79
>PRK10693 response regulator of RpoS; Provisional
Probab=99.12 E-value=4.2e-10 Score=120.86 Aligned_cols=90 Identities=23% Similarity=0.449 Sum_probs=81.5
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCC-
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV- 148 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~- 148 (720)
.+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|||++|+..+.+.+.++++.||+|||.||+
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 47899999999876 4599999999999999999999999875 789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 042954 149 RRNELRNLWQHVWRR 163 (720)
Q Consensus 149 ~~~eL~~~l~~vlr~ 163 (720)
+.++|..+|..+++.
T Consensus 78 ~~~~L~~~i~~~l~~ 92 (303)
T PRK10693 78 DLNRLREMVFACLYP 92 (303)
T ss_pred cHHHHHHHHHHHhhh
Confidence 589999988887654
No 80
>PRK15029 arginine decarboxylase; Provisional
Probab=99.09 E-value=6.7e-10 Score=131.61 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=94.4
Q ss_pred EEEEEecCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH----HHHHHHH
Q 042954 43 RVLLVEADDS--------TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF----ALLTLVM 110 (720)
Q Consensus 43 rVLIVDDd~~--------~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi----eLL~~Ir 110 (720)
+|||||||.. +++.|+..|+..||+|..+.++.+|++.+... ..||+||+|+.||+++|+ ++|++||
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~IR 80 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHHH
Confidence 7999999995 79999999999999999999999999999652 259999999999999997 9999999
Q ss_pred hccCCCCCeEEEEeccCC--HHHHHHHHHcCCcEEEeCCCCHHHH-HHHHHHHHhhc
Q 042954 111 EHDVCKNIPVIMMSLHDS--ISMVLKCMLKGAADFLIKPVRRNEL-RNLWQHVWRRH 164 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d--~e~~~~Al~~GA~dYL~KP~~~~eL-~~~l~~vlr~~ 164 (720)
+.. +++||||+|+..+ .......++. +.+|+.+--+..++ ...+..+.+++
T Consensus 81 ~~~--~~iPIIlLTar~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 81 ERQ--QNVPVFLLGDREKALAAMDRDLLEL-VDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred hhC--CCCCEEEEEcCCcccccCCHHHHHh-hheEEEecCCCHHHHHHHHHHHHHHH
Confidence 754 6899999999986 3333343333 78899887554444 34455554444
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=7.5e-10 Score=115.69 Aligned_cols=117 Identities=22% Similarity=0.437 Sum_probs=102.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++|++|||++..+..|..++... .+++. .+.++.++++.+... .+|++++|+.||+++|+++.+.|+... +..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~--~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGD--PRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccC--CCC
Confidence 579999999999999999999842 34433 589999999999874 699999999999999999999999875 778
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+||++|++. +.+..+++..|.|||.||+..+.|...+....+.
T Consensus 77 ~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 999999997 5667788889999999999999999999876554
No 82
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=98.80 E-value=2.5e-09 Score=117.10 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=59.2
Q ss_pred hhhhccCCCCcchhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc-cccccccc
Q 042954 212 SDAQSSRTSSPYLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI-VSEKLNRS 289 (720)
Q Consensus 212 s~arS~~T~~~~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL-KPgkL~~~ 289 (720)
...++.+| ..|..||+.|+..||++| |++++ .++.|++||+||||||++||++|| |||+||+-
T Consensus 142 ~~~kd~~t--------~~Hs~~va~~a~~ia~~l-gl~~~------~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~e 205 (344)
T COG2206 142 IKAKDDYT--------YGHSVRVAELAEAIAKKL-GLSEE------KIEELALAGLLHDIGKIGIPDSILNKPGKLTEE 205 (344)
T ss_pred ccccchhH--------HHHHHHHHHHHHHHHHHc-CCCHH------HHHHHHHHHHHhhcccccCCHHHhCCCCCCCHH
Confidence 56677788 999999999999999999 99999 999999999999999999999999 99999974
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.26 E-value=8.6e-06 Score=99.00 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=118.3
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccccccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLA 76 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~e 76 (720)
+|||+|+|.|.+| |+|.||........... .... .....+|||+||++..+..+..+|..+||.|..+.++.+
T Consensus 495 ~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~-~~~~--~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~ 571 (919)
T PRK11107 495 EMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDG-LPTD--CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ 571 (919)
T ss_pred HhCCEEEEEecCCCCEEEEEEEEeccCCcccccc-CCcc--ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH
Confidence 4899999999976 99999976543221110 0011 112469999999999999999999999999999998887
Q ss_pred HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 042954 77 AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 77 Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~ 156 (720)
+.. ..||++|+|+.||+..+...+............++|+++...+......+.+.|+.+|+.||+...+|...
T Consensus 572 ----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~ 645 (919)
T PRK11107 572 ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPA 645 (919)
T ss_pred ----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHH
Confidence 333 45999999999998877766555544433345678888888888888999999999999999999999988
Q ss_pred HHHHH
Q 042954 157 WQHVW 161 (720)
Q Consensus 157 l~~vl 161 (720)
+....
T Consensus 646 l~~~~ 650 (919)
T PRK11107 646 LLEPC 650 (919)
T ss_pred HHHhh
Confidence 87654
No 84
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.15 E-value=3.6e-06 Score=102.86 Aligned_cols=85 Identities=20% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccccccccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLA 76 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~e 76 (720)
+|||+|+|.|.+| |+|+||.......... ..+. .....+||||||++.++..+..+|+.+|++|..+.++.
T Consensus 649 ~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~--~~~~--~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~- 723 (894)
T PRK10618 649 KLGGHLTIKSREGLGTRYSIHLKMLAADPEVEE--EEEK--LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL- 723 (894)
T ss_pred HcCCEEEEEECCCCcEEEEEEEEccCCcccccc--cccc--cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc-
Confidence 4899999999987 9999998543221111 1111 12246999999999999999999999999999987642
Q ss_pred HHHHHHcCCCCceEEEEeccC
Q 042954 77 AWETLKCRPHSIDLVLTEVEL 97 (720)
Q Consensus 77 Ale~L~~~~~~pDLVLlDv~M 97 (720)
.. ..|||||+|+.+
T Consensus 724 -----~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 724 -----IS--QEYDIFLTDNPS 737 (894)
T ss_pred -----cC--CCCCEEEECCCC
Confidence 22 459999999984
No 85
>PRK12704 phosphodiesterase; Provisional
Probab=98.12 E-value=5.5e-06 Score=95.45 Aligned_cols=120 Identities=13% Similarity=0.033 Sum_probs=81.4
Q ss_pred eEEEEeccCCHH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCCcccchhhhhcccCccccccccccCCc
Q 042954 119 PVIMMSLHDSIS--MVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGHVPQNLHDVYHKGGAISENNMASSHSS 196 (720)
Q Consensus 119 pVIvLTs~~d~e--~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~~~~~~~~~~~~~~~~~el~~~s~~~~ 196 (720)
.+|+||+++... .+..+|+.++.||..||++.+++...++.-+...-. ..... ...++
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~~~------~~ge~------~~~~l-------- 310 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEEIR------EEGEQ------AVFEL-------- 310 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHH------HHHHH------HHHHh--------
Confidence 588899998876 889999999999999999999999988887663311 00000 00000
Q ss_pred hhhhhhhhhhH-HHHhhhhhccCCCCcchhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 197 DYAASSQKNKG-SEKVSDAQSSRTSSPYLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 197 ~~~~~~~~~ke-i~~ls~arS~~T~~~~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
+.......... +.++ ..++.++ . -...|+.+|+.++..+|+.+ |++.. .++.||+||||||+
T Consensus 311 gi~~~~~~i~~ll~~l-~~R~~~~-q----n~l~Hs~~Va~lA~~lA~~l-gld~~---------~a~~AgLLHDIGK~ 373 (520)
T PRK12704 311 GIHGLHPELIKLLGRL-KYRTSYG-Q----NVLQHSIEVAHLAGLMAAEL-GLDVK---------LAKRAGLLHDIGKA 373 (520)
T ss_pred CcchhHHHHHHHHHHh-hccCcCC-C----cHhHHHHHHHHHHHHHHHHh-CcCHH---------HHHHHHHHHccCcC
Confidence 00011111111 3333 4466665 2 13579999999999999999 88655 36789999999998
No 86
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.92 E-value=9.6e-06 Score=90.95 Aligned_cols=94 Identities=29% Similarity=0.371 Sum_probs=83.3
Q ss_pred CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 66 YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 66 yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
|+|..+..|.+|++.+.. +.+|++|+|+.||+++|+++++++++.. .+ +||+|...+...-.+.+++|+.+||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~---~~-~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEP---AT-VVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCC---cc-eEEEEecCCCCcchhHHhhhhhhhcc
Confidence 677789999999999876 5699999999999999999999999875 22 89999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcc
Q 042954 146 KPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 146 KP~~~~eL~~~l~~vlr~~~ 165 (720)
||.....+...+..+.+...
T Consensus 87 ~~~~~~~~~~r~~~l~~~k~ 106 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRLKC 106 (435)
T ss_pred CCCChHHHHHhhhhhccchh
Confidence 99999988888877766554
No 87
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.51 E-value=0.0007 Score=62.47 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=77.9
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
||||||||..-+..|..+|+-.|+++..+.+..- ...... ..++.+++-..-.. ...++++.+.+.. +.+|||+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~-~~~~~l~~l~~~~--~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS-KLAELLKELLKWA--PHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch-hHHHHHHHHHhhC--CCCCEEE
Confidence 6999999999999999999999999888776443 222222 22444444332222 4568888887766 8999999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
+......... ..+.+-|..|++..+|..+++++
T Consensus 75 lg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 75 LGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 9987765111 11677799999999999999875
No 88
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.45 E-value=0.0009 Score=48.32 Aligned_cols=55 Identities=38% Similarity=0.648 Sum_probs=48.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP 98 (720)
++|+++++++..+..+...|...||++..+.+..+++..+.. ..+|+|++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 379999999999999999999889999999999999988865 3499999998764
No 89
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.87 E-value=0.0095 Score=55.41 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=80.1
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCCCCeEEEEeccCCHHH
Q 042954 54 RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCKNIPVIMMSLHDSISM 131 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~ 131 (720)
...|...|...||+|+.+.+.++++..++.. ..++.||+++. ++ ....++++.|+... ..+||.+++.....+.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~ 81 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERDTTED 81 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCCCccc
Confidence 4567777887899999999999999999865 46899999996 21 24578999999987 8999999998775554
Q ss_pred HHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhh
Q 042954 132 VLKCMLKGAADFLIKPV-RRNELRNLWQHVWRR 163 (720)
Q Consensus 132 ~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~ 163 (720)
+-..+-.-+++|+.... +.+.+...|..+.++
T Consensus 82 l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 82 LPAEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp CCHHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 44444455889998874 455556777776654
No 90
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.77 E-value=0.041 Score=51.54 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=81.4
Q ss_pred EEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCCCC--CHHHHHHHHHhcc
Q 042954 43 RVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPSI--SGFALLTLVMEHD 113 (720)
Q Consensus 43 rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP~~--dGieLL~~Ir~~~ 113 (720)
||++. |.+..=...+..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-..++.. .--++++.+++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 666777778888999999999873 356777787776 459999998887643 2347778888764
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~ 158 (720)
+.-..|++-+..-.+...+..++|+++|+..-...++....++
T Consensus 79 --~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 --AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred --CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 3334455665555666777889999999998888887776554
No 91
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.45 E-value=0.1 Score=50.18 Aligned_cols=117 Identities=12% Similarity=0.024 Sum_probs=88.7
Q ss_pred cEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCCCC--CHHHHHHHHHhc
Q 042954 42 LRVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPSI--SGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP~~--dGieLL~~Ir~~ 112 (720)
.+||+. |.+..=...+..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-..|... .-.++++.|++.
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 578888 888888889999999999999983 356777787776 459999999888743 345788888877
Q ss_pred cCCCCCeEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 113 DVCKNIPVIMMSLHD------SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~------d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
. .++++|+ +-+.. ..+...++.+.|++.++...-+.+++...++..+.
T Consensus 82 ~-~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G-LGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C-CCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 2466544 44433 34455678899998899888899999988888765
No 92
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.31 E-value=0.003 Score=53.13 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDE 279 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~ 279 (720)
...|+.||+.++..+|+.+ +++. +.++.|++||||||+..|+.
T Consensus 5 ~~~H~~~v~~~a~~la~~~-~~~~---------~~l~~AalLHDiG~~~~~~~ 47 (80)
T TIGR00277 5 VLQHSLEVAKLAEALAREL-GLDV---------ELARRGALLHDIGKPITREG 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCH---------HHHHHHHHHHccCCcccchH
Confidence 4789999999999999988 7643 24889999999999976544
No 93
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=96.02 E-value=0.11 Score=57.16 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=107.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
-+|++-++|+.+.+.++.+..++| |+|....+....++. +.=+++-+-|=|..--+++..||+.. . +
T Consensus 31 ~~~~~~~~d~~~~~~~~~v~~~~gg~f~~~~~~~~~~~~~~-------~~g~vvhltmyg~~~~~~~~~i~~~~--~--~ 99 (339)
T PRK12703 31 SSILVDERDETLENTIKKVVDNFGGSFEIKTGIEWKSEFKK-------FHGIRVHLTMYGRPIEDVIDEIRESG--K--D 99 (339)
T ss_pred CeeEecCCcHhHHHHHHHHHHhcCCCeEEEeccCHHHHHHh-------cCCEEEEEecCCCchHHHHHHHhccC--C--C
Confidence 379999999999999999999996 777776665554432 22367778888888888899998632 2 3
Q ss_pred EEEEe-ccCCHHHHHHHHHcCCcEEE----eCC-CCHHHHHHHHHHHHhhccccCCCcccchhhhhcccCcccccccccc
Q 042954 120 VIMMS-LHDSISMVLKCMLKGAADFL----IKP-VRRNELRNLWQHVWRRHSLLGGHVPQNLHDVYHKGGAISENNMASS 193 (720)
Q Consensus 120 VIvLT-s~~d~e~~~~Al~~GA~dYL----~KP-~~~~eL~~~l~~vlr~~~~l~~~~~~~~~~~~~~~~~~~el~~~s~ 193 (720)
++++. +..-...+.+. .||= .-| .....|.-.+.+++.+..+...-.. +.........
T Consensus 100 ~~~vvg~~kvp~~~y~~-----ad~nv~v~~qphsevaala~fld~~~~g~~~~~~~~~--------~~~v~P~~~g--- 163 (339)
T PRK12703 100 VMVLVGSEKVPIEAYEI-----ADYNVSVTNQPISEVSALAIFLDRYFDGKELEKSFEG--------KINVVPMERG--- 163 (339)
T ss_pred EEEEECCCcCCHHHHhh-----cccceeeCCCChHHHHHHHHHHHHhccchhhhhccCC--------cEEEeecccc---
Confidence 44444 33333333332 2331 124 2234455556665555443110000 0000010000
Q ss_pred CCchhhhhhhhhhHHHHhhhhhccCCCCcchhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccc
Q 042954 194 HSSDYAASSQKNKGSEKVSDAQSSRTSSPYLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKT 273 (720)
Q Consensus 194 ~~~~~~~~~~~~kei~~ls~arS~~T~~~~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGK 273 (720)
..+.......+...+-..... . +-...|+.||..++..+|+.+ +++ .+.+..||+||||||
T Consensus 164 ---k~v~~ip~~ee~l~Ll~k~~~-~-----e~l~~Hs~rVa~lA~~LA~~~-~~D---------~~ll~aAALLHDIGK 224 (339)
T PRK12703 164 ---KLVKIIPDEDQCLDLLKKYGA-S-----DLLIRHVKTVYKLAMRIADCI-NAD---------RRLVAAGALLHDIGR 224 (339)
T ss_pred ---ccccCCCCHHHHHHHHHHcCC-C-----hHHHHHHHHHHHHHHHHHHHc-CCC---------HHHHHHHHHHHhccc
Confidence 001111111221112111111 1 123799999999999999988 653 346788999999999
Q ss_pred ccCC
Q 042954 274 GGAS 277 (720)
Q Consensus 274 I~iP 277 (720)
.-.+
T Consensus 225 ~k~~ 228 (339)
T PRK12703 225 TKTN 228 (339)
T ss_pred cccc
Confidence 8654
No 94
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=95.98 E-value=0.0067 Score=59.95 Aligned_cols=46 Identities=2% Similarity=-0.042 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASD 278 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD 278 (720)
..|+.||+.++..||+.+ +.+.. ..+.+.++.||+||||||+.+|+
T Consensus 15 ~~Hs~~Va~~A~~ia~~~-~~~~~----~~d~~~l~~aaLLHDIGK~~~~~ 60 (164)
T TIGR00295 15 RRHCLAVARVAMELAENI-RKKGH----EVDMDLVLKGALLHDIGRARTHG 60 (164)
T ss_pred HHHHHHHHHHHHHHHHHh-ccccc----cCCHHHHHHHHHHhcCCcccCCC
Confidence 889999999999999988 53221 11567899999999999998754
No 95
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.79 E-value=0.26 Score=47.12 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=79.1
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHhccCCCCCeEEE
Q 042954 48 EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~~~~~p~ipVIv 122 (720)
|-+..-...+..+|+..||+|+. ..+.+++++.+.+ ..+|+|.+-..|.. +. --++++.|++... ..++ |+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g~-~~i~-vi 88 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLGR-PDIL-VV 88 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcCC-CCCE-EE
Confidence 55666667888999999999987 4578888888876 45999988776642 22 2367777877642 2333 44
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
+-+..-.+...+..++|+++|+..--+..++...+...+
T Consensus 89 vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 89 VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 555444555667889999999988888888888777754
No 96
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=95.77 E-value=0.0041 Score=55.95 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI 281 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL 281 (720)
-.|+.+|+.++..++..+ ++ ..+...+.+||+||||||...++.++
T Consensus 2 ~~Hs~~V~~~a~~l~~~~-~~-------~~~~~~l~~aaLlHDiGk~~~~~~~~ 47 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRL-GL-------EEDRELLRIAALLHDIGKIPTPDFIE 47 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH-TH-------HHHHHHHHHHHHHTTTTHHSTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHc-CC-------chhHHHHHHHHHHHhcCCCCCchHHH
Confidence 369999999999999888 43 34788999999999999998877555
No 97
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.66 E-value=0.13 Score=47.52 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=66.4
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCC-CCeEE
Q 042954 48 EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCK-NIPVI 121 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p-~ipVI 121 (720)
|.+..=...+..+|+..||+|+. ....++.++.+.+ ..||+|.+-..+.. ....++++.+|+.. + +++|
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~i- 84 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIPV- 84 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcC--CCCCeE-
Confidence 66667777899999999999976 3346667777766 45999999887653 34568888998875 5 5554
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEe
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++.+..-......+...|++.|+.
T Consensus 85 ~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 85 LVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred EEECCCCChhHHHHHHcCCeEEEC
Confidence 455554444445677899977665
No 98
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.48 E-value=0.0077 Score=41.84 Aligned_cols=25 Identities=48% Similarity=0.583 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhccCCCceeeec
Q 042954 662 SQRDAALTKFRLKRKDRCYDKKVRYQ 687 (720)
Q Consensus 662 ~~r~~~~~~~~~k~~~r~~~k~i~y~ 687 (720)
..|.+.|.||.||||+|.+. +.-|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 57999999999999999887 55553
No 99
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=95.20 E-value=0.009 Score=65.71 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI 281 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL 281 (720)
...|+.+|+.++..||+.+ |+++ +.+++||+||||||+.+|+.+.
T Consensus 197 ~~~HSl~VA~~A~~LA~~~-g~d~---------~~a~~AGLLHDIGK~~~~~~~~ 241 (342)
T PRK07152 197 RYKHCLRVAQLAAELAKKN-NLDP---------KKAYYAGLYHDITKEWDEEKHR 241 (342)
T ss_pred HHHHHHHHHHHHHHHHHHh-CcCH---------HHHHHHHHHHHhhccCCHHHHH
Confidence 4899999999999999998 7743 5788999999999998887753
No 100
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.69 E-value=0.27 Score=59.13 Aligned_cols=117 Identities=9% Similarity=0.058 Sum_probs=78.0
Q ss_pred cEEEEEecCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 42 LRVLLVEADD-S-----TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~-~-----~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
++|||||++- . -.+.|...|++.||+|..+.+..+++..+... ..++.||+++.-. ..+++..|++..
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLN-- 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhC--
Confidence 4688888774 2 24556677788899999999999999988743 5688999996332 356999999887
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCC-HHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR-RNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~-~~eL~~~l~~vlr~~ 164 (720)
.++||+++........+-...-.-+++|+.--.+ .+.+...|..+.+.+
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEY 124 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHH
Confidence 7899999976543332222222235666664433 344444455555544
No 101
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=94.52 E-value=0.015 Score=56.93 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDEL 280 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~I 280 (720)
..|+.+|+.+++.+|+.+ +++. +..++||+||||||+.-++.+
T Consensus 10 ~~Hsl~Va~~a~~lA~~~-~~d~---------e~a~~AGLLHDIGk~~~~~~~ 52 (158)
T TIGR00488 10 YQHCLGVGQTAKQLAEAN-KLDS---------KKAEIAGAYHDLAKFLPKEQL 52 (158)
T ss_pred HHHHHHHHHHHHHHHHHh-CcCH---------HHHHHHHHHHHHhccCCHHHH
Confidence 789999999999999988 6533 368899999999997544433
No 102
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=94.22 E-value=0.017 Score=59.55 Aligned_cols=42 Identities=52% Similarity=0.801 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHhhhccCCCceeeecchhhhhhhCCCccc
Q 042954 660 HSSQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKG 701 (720)
Q Consensus 660 ~~~~r~~~~~~~~~k~~~r~~~k~i~y~~rk~~a~~~~r~~g 701 (720)
....|++.+.||+++++.|.|+|+|+|..||..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 356899999999999999999999999999999999999999
No 103
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=94.13 E-value=1.4 Score=42.52 Aligned_cols=111 Identities=7% Similarity=0.000 Sum_probs=78.8
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHhccCCCCCeEEE
Q 042954 48 EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~~~~~p~ipVIv 122 (720)
|-+..=...+..+|+..||+|+. ..+.++.++.+.+ ..+|+|-+-..|.. +. --+++++|++... .+ ++|+
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~gl-~~-~~vi 87 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAGL-EG-ILLY 87 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCCC-CC-CEEE
Confidence 33444556788999999999987 5578888888877 45999998887753 32 3467778877652 34 4466
Q ss_pred EeccC-----CHH-HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 123 MSLHD-----SIS-MVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 123 LTs~~-----d~e-~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+-+.. +.. ...++.+.|++..+...-..+++...|++.++
T Consensus 88 vGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 88 VGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred ecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 66632 122 23467799998888888888999998888764
No 104
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.06 E-value=0.37 Score=57.98 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=76.4
Q ss_pred cEEEEEecCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 42 LRVLLVEADD-S-----TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~-~-----~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
|+||||+++. . -.+.|...|++.||+|+.+.+..+++.++... ..++.||+|+.- ...+++..|++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~-- 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMN-- 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhC--
Confidence 4678887763 1 24556777888899999999999999988743 568899999632 2356999999877
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV-RRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~ 164 (720)
..+||+++........+-...-.-+++|+.--. +.+.+...|..+.+.+
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEY 124 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHH
Confidence 789999997654333222222222556665432 3444444455555444
No 105
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=93.63 E-value=0.07 Score=48.14 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASD 278 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD 278 (720)
...|..+|..++..+++.+ ..++. ..+.+++||+||||||...+.
T Consensus 3 ~~~Hs~~v~~~~~~~~~~~-~~~~~------~~~~l~~aaLlHDig~~~~~~ 47 (145)
T cd00077 3 RFEHSLRVAQLARRLAEEL-GLSEE------DIELLRLAALLHDIGKPGTPD 47 (145)
T ss_pred hHHHHHHHHHHHHHHHHHh-CcCHH------HHHHHHHHHHHHhcCCccCcc
Confidence 3679999999999999877 44333 567899999999999987654
No 106
>PRK00106 hypothetical protein; Provisional
Probab=93.52 E-value=0.089 Score=61.17 Aligned_cols=43 Identities=7% Similarity=0.014 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDEL 280 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~I 280 (720)
.+.|+..|+.++..+|+++ |++ .+.+++|++||||||+ ++..+
T Consensus 351 l~~HSv~VA~lA~~lA~~l-gld---------~e~a~~AGLLHDIGK~-v~~e~ 393 (535)
T PRK00106 351 VLRHSVEVGKLAGILAGEL-GEN---------VALARRAGFLHDMGKA-IDREV 393 (535)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCC---------HHHHHHHHHHHhccCc-cCccc
Confidence 4899999999999999999 763 3578999999999998 54443
No 107
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.18 E-value=0.27 Score=53.40 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec-cCCHHHHHHHHHcCCcEE
Q 042954 65 GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL-HDSISMVLKCMLKGAADF 143 (720)
Q Consensus 65 gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs-~~d~e~~~~Al~~GA~dY 143 (720)
|.+++.+.+..++..... .-.+||+|..+-. .++... .+ +...||++++ ..+.+....|++.||.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~--~p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAG--LP--RRRRVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh----HHHhcc--CC--CCCCEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 456777777777655442 2578999875411 111121 12 2334554544 567889999999999999
Q ss_pred EeCCCCHHHHHHHHHHH
Q 042954 144 LIKPVRRNELRNLWQHV 160 (720)
Q Consensus 144 L~KP~~~~eL~~~l~~v 160 (720)
|.+|++..+|...+..+
T Consensus 69 l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 69 AVLPEAEGWLVELLADL 85 (322)
T ss_pred eeCCCCHHHHHHHHHhh
Confidence 99999999999988775
No 108
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=92.89 E-value=0.067 Score=55.58 Aligned_cols=40 Identities=5% Similarity=-0.175 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
...|+.||+.++..||+.+ |.+ ...+..||+|||||+.-.
T Consensus 37 ~l~H~~~Va~lA~~Ia~~~-g~D---------~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 37 VLEHSLRVAYLAYRIAEEE-GVD---------PDLALRAALLHDIGKAID 76 (222)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCC---------HHHHHHHHHHHhhccccc
Confidence 4789999999999999988 663 457889999999999743
No 109
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=91.92 E-value=0.15 Score=45.16 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI 281 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL 281 (720)
...|..+|+.++..+++.+ +. ...+.+.+|++|||||+...++...
T Consensus 5 ~~~H~~~v~~~~~~l~~~~-~~--------~~~~~~~~a~LlHDig~~~~~~~~~ 50 (124)
T smart00471 5 VFEHSLRVAQLAAALAEEL-GL--------LDIELLLLAALLHDIGKPGTPDSFL 50 (124)
T ss_pred HHHHHHHHHHHHHHHHHHc-Ch--------HHHHHHHHHHHHHcccCccCCHHHh
Confidence 4689999999999999888 33 1446789999999999998765543
No 110
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=91.87 E-value=2.4 Score=43.13 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=71.7
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCCCC--CHHHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPSI--SGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP~~--dGieLL~~Ir~ 111 (720)
..+||+. |-+..=...+..+|+..||+|+.. ...++.++.+.+ ..||+|.+-..|... ...++++.||+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 3588888 777777889999999999999863 256677777776 559999999877643 34578888988
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
....++++|++=-..-..+ -+-..||+.|-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEEC
Confidence 7633367766554444433 355679887764
No 111
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.87 E-value=0.1 Score=60.69 Aligned_cols=39 Identities=5% Similarity=-0.060 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
...|+.+|+.++..+|+.+ |++.. .++.||+||||||+.
T Consensus 330 ~l~Hs~~VA~lA~~LA~~l-gld~~---------~a~~AGLLHDIGK~~ 368 (514)
T TIGR03319 330 VLQHSIEVAHLAGIMAAEL-GEDVK---------LAKRAGLLHDIGKAV 368 (514)
T ss_pred HHHHHHHHHHHHHHHHHHh-CcCHH---------HHHHHHHHHhcCccc
Confidence 4679999999999999999 87544 467899999999973
No 112
>PRK12705 hypothetical protein; Provisional
Probab=90.54 E-value=0.15 Score=58.91 Aligned_cols=37 Identities=5% Similarity=0.001 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
..|+.+|+.++..+|+.+ |++.. .++.||+||||||.
T Consensus 325 l~HSl~VA~lA~~LA~~l-Gld~d---------~a~~AGLLHDIGK~ 361 (508)
T PRK12705 325 LSHSLEVAHLAGIIAAEI-GLDPA---------LAKRAGLLHDIGKS 361 (508)
T ss_pred HHHHHHHHHHHHHHHHHc-CcCHH---------HHHHHHHHHHcCCc
Confidence 679999999999999999 88654 45689999999996
No 113
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=90.36 E-value=5.9 Score=37.91 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=73.7
Q ss_pred cCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHhccCCCCCeEEEE
Q 042954 49 ADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~~~~~p~ipVIvL 123 (720)
-+..=...+..+|+..||+|+. .-..++.++...+ +++|+|.+-..|.. +. --++++.+++.. ..+++| ++
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~g-l~~v~v-iv 86 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAG-LKDILL-YV 86 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCC-CCCCeE-EE
Confidence 3444556888999999999987 4577888888776 45999998887753 33 347778888764 245444 45
Q ss_pred eccC-----C-HHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 042954 124 SLHD-----S-ISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 124 Ts~~-----d-~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~ 158 (720)
-+.. + .+...+..++|++..+...-+++++...|+
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 4442 2 233455779999999887778887776554
No 114
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=90.21 E-value=2.6 Score=43.55 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=72.1
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~ 111 (720)
..+|||. |.+..=...+..+|+..||+|+... ..++.++.+.+ ..+|+|.+-..|+. +. --++++.|++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHh
Confidence 4588888 7788888889999999999998833 46667777776 56999999988873 33 3478888887
Q ss_pred ccCCCCCeEEEEeccCCHHHHHH---HHHcCCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLK---CMLKGAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~---Al~~GA~dYL~ 145 (720)
.. .+++|++=-..-+.+...+ +-..||+.|-.
T Consensus 166 ~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~ 200 (213)
T cd02069 166 RG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVK 200 (213)
T ss_pred cC--CCCeEEEEChhcCHHHHhhhhccccCCCceEec
Confidence 65 5777765554445444432 23468877754
No 115
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.01 E-value=2.5 Score=44.70 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=77.0
Q ss_pred cEEEEEecCHHHHHHHHH------HHHhCCCEEE-E-ECCHHHHHHHHHcCCCCceEEEEeccCC---------CCCHHH
Q 042954 42 LRVLLVEADDSTRQIISA------LLRKCGYRVA-A-VPDGLAAWETLKCRPHSIDLVLTEVELP---------SISGFA 104 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~------lL~~~gyeV~-~-A~sg~eAle~L~~~~~~pDLVLlDv~MP---------~~dGie 104 (720)
+|+=|+.|+....--+.+ .|-+.||.|. . +.|...|.++.+. .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 677777766533322222 2334589887 4 6677777666543 47777 66 222268
Q ss_pred HHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHhhcc
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK-----PVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K-----P~~~~eL~~~l~~vlr~~~ 165 (720)
+++.|++. .++|||+=.+-...+.+.+|++.||+..++- .-++..+...+..+++..+
T Consensus 166 ~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 166 NLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 89999876 3689999999999999999999999999764 3446666666666665443
No 116
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=89.63 E-value=3.9 Score=37.32 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=62.4
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEecc-CCCC-CHHHHHHHHHhccCCCCCeEEEE
Q 042954 49 ADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVE-LPSI-SGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~-MP~~-dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
-++.-...+..+|++.||+|... .+.++..+.+.. ..||+|.+... .+.. ...++++.+|+.. |+++||+=
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~--p~~~iv~G 87 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKERN--PNIPIVVG 87 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTTC--TTSEEEEE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 34667888999999999999875 345666777776 45999999984 4443 3568888888765 77777755
Q ss_pred eccCCHHHHHHHHH--cCCcEEEeC
Q 042954 124 SLHDSISMVLKCML--KGAADFLIK 146 (720)
Q Consensus 124 Ts~~d~e~~~~Al~--~GA~dYL~K 146 (720)
-.+... .-..+++ .|++..+.-
T Consensus 88 G~~~t~-~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 88 GPHATA-DPEEILREYPGIDYVVRG 111 (121)
T ss_dssp ESSSGH-HHHHHHHHHHTSEEEEEE
T ss_pred CCchhc-ChHHHhccCcCcceecCC
Confidence 555443 3344554 566655543
No 117
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=89.42 E-value=4 Score=38.07 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 52 STRQIISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
.....+..+|++.|+++.. ....++.++.+... ..||+|.+-+.-+.. ...++++.||+.. |+++||+--.+..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHAT 79 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchh
Confidence 3456788899998987665 44556666766541 359999999855543 4678999999876 7777776555544
Q ss_pred HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 129 ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.. ...++..-..||+..---..-|...++.+.++
T Consensus 80 ~~-p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~g 113 (127)
T cd02068 80 FF-PEEILEEPGVDFVVIGEGEETFLKLLEELEEG 113 (127)
T ss_pred hC-HHHHhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 22 22224445668888875555666666665443
No 118
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=89.13 E-value=6.7 Score=39.47 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=59.3
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCCCC--------CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELPSI--------SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP~~--------dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
+.+..++.+... ..+|+|.+....|.. .|++.++++++.. +++||++..+- +.+.+.+++..||+.
T Consensus 111 ~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~~~~Ga~g 184 (212)
T PRK00043 111 THTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEVLEAGADG 184 (212)
T ss_pred CCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 556677777654 348999987666643 4689999998765 45899888776 578888999999999
Q ss_pred EEe-----CCCCHHHHHHHHHHHH
Q 042954 143 FLI-----KPVRRNELRNLWQHVW 161 (720)
Q Consensus 143 YL~-----KP~~~~eL~~~l~~vl 161 (720)
+.. +.-++.+....++..+
T Consensus 185 v~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 185 VAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred EEEeHHhhcCCCHHHHHHHHHHHH
Confidence 875 3334444444444433
No 119
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.04 E-value=6.8 Score=41.50 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=77.1
Q ss_pred cEEEEEecCHHHHHHHH------HHHHhCCCEEE-E-ECCHHHHHHHHHcCCCCceEEEEeccCC---------CCCHHH
Q 042954 42 LRVLLVEADDSTRQIIS------ALLRKCGYRVA-A-VPDGLAAWETLKCRPHSIDLVLTEVELP---------SISGFA 104 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~------~lL~~~gyeV~-~-A~sg~eAle~L~~~~~~pDLVLlDv~MP---------~~dGie 104 (720)
+|+=|+.|+....--+. +.|-+.||.|. . +.|...|.++... .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 67777776553222222 23334589887 4 6677777666543 47877 66 222268
Q ss_pred HHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHhhcc
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI-----KPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~-----KP~~~~eL~~~l~~vlr~~~ 165 (720)
+++.|++. .++|||+=.+-...+.+.+|++.||+..++ |.-++..+...+..+++..+
T Consensus 166 ~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 166 NLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 89999886 368999999999999999999999999976 43456666666666665443
No 120
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=88.52 E-value=0.26 Score=51.45 Aligned_cols=40 Identities=8% Similarity=-0.088 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHh-c--CCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 226 AESAYMQNMQGLSQLKCRSA-S--NTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 226 ~~g~Hv~Rva~~s~~lA~~l-~--gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
-...|+.||-.++..+|+.. . +. +.+.+++||+|||||+.
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~---------D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDL---------SDETWFLTCLLHDIGTT 97 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCC---------CHHHHHHHHHHHhhccc
Confidence 45899999999999999743 1 23 34579999999999986
No 121
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.35 E-value=1.6 Score=41.16 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=72.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-----HHHHHHHHhccCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG-----FALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-----ieLL~~Ir~~~~~p 116 (720)
.+.+.||.+....+....+|..-+.+|+.-....+ + -...||++|+.+-.+-..- ..+.+.+.-.
T Consensus 12 k~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~----l--p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mt---- 81 (140)
T COG4999 12 KRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSA----L--PPAHYDMMLLGVAVTFRENLTMQHERLAKALSMT---- 81 (140)
T ss_pred ceeEEecCccHHHHHHHHHHhcCCceEEecccccc----c--ChhhhceeeecccccccCCchHHHHHHHHHHhhh----
Confidence 58999999999999999999999999987443222 2 1255999999997764333 3333333222
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHH
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLW 157 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l 157 (720)
+--|+.+-++ ..-.+.+..+.|+.++|.||++...|..++
T Consensus 82 d~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 82 DFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred cceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 2223333332 344567788999999999999999887644
No 122
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.17 E-value=4.4 Score=41.22 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=66.0
Q ss_pred cEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC-CCH-HHHHHHHHhc
Q 042954 42 LRVLLV----EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS-ISG-FALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~dG-ieLL~~Ir~~ 112 (720)
.+||+. |.+..=...+..+|+..||+|+. -...++.++.+.+ ..||+|.+-+.|+. +.. .++++.|++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 466665 34555566788899999999996 2355677777776 55999999988763 333 4778888887
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
...+.++|+ +-+..-.. .-|-+.||+.|-.
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 433455555 44443222 2355779998864
No 123
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.01 E-value=9.7 Score=39.08 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=60.4
Q ss_pred HHHHHHHh-CCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc-------CCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 56 IISALLRK-CGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE-------LPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 56 ~L~~lL~~-~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~-------MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
.+.+.+++ .+..+.. +.+.+++..... ..+|+|.+... .....+++++++|++.- ++|||...+-
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~GGI 182 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEGRI 182 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEECCC
Confidence 34444455 5666554 778888866554 34888866421 12234578999998763 6899999998
Q ss_pred CCHHHHHHHHHcCCcEEEeCC
Q 042954 127 DSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 127 ~d~e~~~~Al~~GA~dYL~KP 147 (720)
.+.+.+.+++..||+.++.=.
T Consensus 183 ~t~~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 183 NTPEQAKKALELGAHAVVVGG 203 (221)
T ss_pred CCHHHHHHHHHCCCCEEEEch
Confidence 899999999999999887653
No 124
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=87.84 E-value=7.6 Score=37.87 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=81.5
Q ss_pred ccEEEE----EecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHh
Q 042954 41 VLRVLL----VEADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLI----VDDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~ 111 (720)
+.|||| .|-+..-...+.++|+..||+|+. ..+++|+.+..-+ ...|+|.+-..--+ ...-++++.+|+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 456655 477888888999999999999987 7789999887755 34888876543221 123456666776
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
... .++. ++.-+.-..+...+..+.|++.|+.--....+....|...+.
T Consensus 90 ~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 90 AGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred hCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 642 2333 455666666666677789999999776777776666655443
No 125
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=85.65 E-value=0.39 Score=48.56 Aligned_cols=44 Identities=5% Similarity=-0.071 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI 281 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL 281 (720)
-.|+.||++.+..+|+.. +++.+ ..+.||+|||+.|.-=++.++
T Consensus 19 ~~H~l~V~~~A~~LA~~y-~~d~~---------kA~~AgilHD~aK~~p~~~~~ 62 (187)
T COG1713 19 FEHCLGVAETAIELAEAY-GLDPE---------KAYLAGILHDIAKELPEQKLL 62 (187)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCHH---------HHHHHHHHHHHHhhCCHHHHH
Confidence 689999999999999999 77555 488999999999985444443
No 126
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=84.97 E-value=11 Score=46.02 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=79.6
Q ss_pred cEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCCC--CHHHHHHHHHhc
Q 042954 42 LRVLLV----EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPSI--SGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~~--dGieLL~~Ir~~ 112 (720)
.+|+|. |.+..-...+..+|+..||+|.. ..+.+++.+...+ ..+|+|++-..+... ..-++++.|++.
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 456654 33444455678888999999965 3467888888776 448988876655432 355888888887
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
. .++++ |++.+..-.+....+.+.|+++|+.--.+..+++..++..++
T Consensus 661 G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 G-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred C-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 4 12333 446655333444556789999999988998888877777664
No 127
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=84.86 E-value=9.9 Score=44.14 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHcCCCCceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEE
Q 042954 50 DDSTRQIISALLRKCG-YRVAAVP------DGLAAWETLKCRPHSIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 50 d~~~r~~L~~lL~~~g-yeV~~A~------sg~eAle~L~~~~~~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVI 121 (720)
.|.-...|...|+..| ++|...+ +.++..+.+.. ..||||.+-..-+... ..++++.+|+.. |+++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~~--P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARERL--PNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHHC--CCCEEE
Confidence 5677888999999999 5776643 23344555655 4599999977655443 458888888876 788777
Q ss_pred EEeccCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 122 MMSLHDSISMVLKCML-KGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~-~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+=-.+... ...+++. ....||++.--....|..+++.+..+
T Consensus 97 ~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g 138 (497)
T TIGR02026 97 LGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALENH 138 (497)
T ss_pred EcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcC
Confidence 65555443 2345553 45678999887777777777765443
No 128
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.05 E-value=10 Score=34.00 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=54.6
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEE--CCHHH-HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAV--PDGLA-AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A--~sg~e-Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+||||-..+.....++.++++.|+++... ..+.+ ....+...-...|+||+=...=.-+-...++..-+. .++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk---~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK---YGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH---cCCc
Confidence 58999999999999999999999988887 22221 111222211346888775544333333444443332 4788
Q ss_pred EEEEeccCCHHHHHHHH
Q 042954 120 VIMMSLHDSISMVLKCM 136 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al 136 (720)
+++.-+ .+...+.+++
T Consensus 78 ~~~~~~-~~~~~l~~~l 93 (97)
T PF10087_consen 78 IIYSRS-RGVSSLERAL 93 (97)
T ss_pred EEEECC-CCHHHHHHHH
Confidence 887653 3444555555
No 129
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.85 E-value=18 Score=32.66 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=64.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHH-HHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRK-CGYRVAA-VPDGLAAWE-TLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~-A~sg~eAle-~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
+||.||---..-+..+..+++. .+++++. ++...+..+ ..+. ..+. ++.| ++.+-+.. ..++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~--~~~~-~~~~-----------~~~ll~~~-~~D~ 65 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK--YGIP-VYTD-----------LEELLADE-DVDA 65 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH--TTSE-EESS-----------HHHHHHHT-TESE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH--hccc-chhH-----------HHHHHHhh-cCCE
Confidence 4677777766666666677766 4677765 443333333 3333 2244 4444 23333321 1343
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
-+|........+.+.+|++.|.+=|+-||+ +.+++...++.+-+..
T Consensus 66 V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp EEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred EEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 333333334467889999999999999996 8888888887765544
No 130
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=83.64 E-value=1.3 Score=43.21 Aligned_cols=40 Identities=5% Similarity=-0.017 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHH-------HHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLK-------CRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~l-------A~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
..|+.+|+.++..+ +..+ +. +..+.+..|+.||||||+..
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~-~~--------~~~~~~~~~~~lHDiGK~~~ 48 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLI-GK--------LLRELLDLLALLHDIGKINP 48 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHH-hh--------HHHHHHHHHHHHccCccCCH
Confidence 36888888888764 4333 21 25678999999999999853
No 131
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=83.19 E-value=9.6 Score=38.40 Aligned_cols=78 Identities=10% Similarity=0.166 Sum_probs=57.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
-+++|+.+++..++.++.++..+| |.|....+.+++++.++.....+-|+..+..+.+ . ...||+.... .-|
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~---~~~ir~~~~~-~~p 105 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--V---EPEIREAHRK-GEP 105 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--h---HHHHHHhhcc-CCc
Confidence 489999999999999999999996 8899999999999988743345778888887766 3 4444432111 235
Q ss_pred EEEEec
Q 042954 120 VIMMSL 125 (720)
Q Consensus 120 VIvLTs 125 (720)
++++-+
T Consensus 106 ~LIvvG 111 (176)
T PRK03958 106 LLIVVG 111 (176)
T ss_pred EEEEEc
Confidence 555555
No 132
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=82.14 E-value=3.4 Score=42.10 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=54.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEecc--CCCCCH--HHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE--LPSISG--FALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~--MP~~dG--ieLL~~Ir~~~~~p 116 (720)
|++|||||..+.+---|..+|+..|++|....+....++.++. ..||.||+--. -|...| .++++++ . .
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~---~--~ 73 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF---A--G 73 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh---c--C
Confidence 4689999999999999999999999888887666444445544 44899998753 344333 3444444 2 4
Q ss_pred CCeEEEEe
Q 042954 117 NIPVIMMS 124 (720)
Q Consensus 117 ~ipVIvLT 124 (720)
.+||+=+.
T Consensus 74 ~~PiLGVC 81 (191)
T COG0512 74 RIPILGVC 81 (191)
T ss_pred CCCEEEEC
Confidence 57888664
No 133
>PRK10119 putative hydrolase; Provisional
Probab=82.13 E-value=0.98 Score=47.34 Aligned_cols=37 Identities=5% Similarity=0.041 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKT 273 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGK 273 (720)
+..|+.||-.++..||+.. +. +.+.+.+||+||||+-
T Consensus 26 D~~Hi~RV~~lA~~Ia~~e-~~---------D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 26 DICHFRRVWATAQKLAADD-DV---------DMLVVLTACYFHDIVS 62 (231)
T ss_pred ChHHHHHHHHHHHHHHHhc-CC---------CHHHHHHHHHHhhcch
Confidence 4789999999999999765 43 4457889999999974
No 134
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=82.08 E-value=34 Score=36.53 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=73.6
Q ss_pred HHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-----HHHHHHHHhccCCCCCeEEEEeccCCHH
Q 042954 58 SALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSISG-----FALLTLVMEHDVCKNIPVIMMSLHDSIS 130 (720)
Q Consensus 58 ~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-----ieLL~~Ir~~~~~p~ipVIvLTs~~d~e 130 (720)
.+.|-+.||.|.. ..|..-|.++.+.. -.+|+-+.-|-.+| -..|+.|++. +++|||+=.+-...+
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~G----c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpVivdAGIgt~s 202 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIG----CATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcC----CeEEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEEeCCcCCHH
Confidence 4455677999987 44556665554432 24556666664333 3678888876 469999999999999
Q ss_pred HHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHhhcc
Q 042954 131 MVLKCMLKGAADFLI-----KPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 131 ~~~~Al~~GA~dYL~-----KP~~~~eL~~~l~~vlr~~~ 165 (720)
.+..|++.|+++.|. |--++.++...++.+++-.+
T Consensus 203 Da~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 203 EASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 999999999988854 66788888888888876554
No 135
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=80.95 E-value=0.92 Score=49.65 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=35.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 223 YLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 223 ~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
++.+...|+..|..++..+|..++.+ ..+.+..+|+|||||||
T Consensus 156 y~GGLleHtl~v~~~~~~l~~~y~~~---------n~dll~agalLHDiGKi 198 (314)
T PRK13480 156 FVSGLAYHVVSMLRLAKSICDLYPSL---------NKDLLYAGIILHDLGKV 198 (314)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcccc---------CHHHHHHHHHHHHhhhH
Confidence 56778889999999999999866333 34578899999999998
No 136
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=80.48 E-value=8.9 Score=38.66 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=54.7
Q ss_pred cccCCccEEEEEecCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHh
Q 042954 36 FLPRMVLRVLLVEADDSTRQIISALLRKCGY---RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVME 111 (720)
Q Consensus 36 ~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gy---eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~ 111 (720)
++.|-.-+|++||-++.....+++-++..+. -.+...+...++..+......||||++|-=-..... .+++..|.+
T Consensus 60 ALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 60 ALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAE 139 (183)
T ss_dssp HHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHH
Confidence 3455567999999999999999999998873 234467777887766433456999999951112222 568888865
Q ss_pred ccCCCCCeEEEE
Q 042954 112 HDVCKNIPVIMM 123 (720)
Q Consensus 112 ~~~~p~ipVIvL 123 (720)
......--+|++
T Consensus 140 ~~~l~~~~~ii~ 151 (183)
T PF03602_consen 140 NNLLNEDGLIII 151 (183)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 433233344444
No 137
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=79.52 E-value=11 Score=40.08 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=73.2
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
.|-+.=.++.+.+.+..+|....|.+..+.++.+.++.++.+...+|.+|+..... -..++..+.+.. --.|+|+
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g--~LLPaVi 76 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQG--ILLPAVI 76 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT------EEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcC--ccccEEE
Confidence 45566677888999999999988999999999999999998778899999997554 366888898876 5689999
Q ss_pred EeccCCHHHHHHHHHcCCcEE-----EeCCCCHHHHHHHHHHHHhhcc
Q 042954 123 MSLHDSISMVLKCMLKGAADF-----LIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dY-----L~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+....+.... -..|-..| -.+.-..++|-..|.+++.++-
T Consensus 77 l~~~~s~~~~---~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrFL 121 (283)
T PF07688_consen 77 LGSSESASTT---SESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRFL 121 (283)
T ss_dssp ES---S--TT---S--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHHH
T ss_pred EecCcccccC---CCCCceeeehHheEccHHHHHHHHHHHHHHHHHHH
Confidence 8764331110 01333333 3334445667677777766553
No 138
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=77.88 E-value=50 Score=35.14 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEec-c--CCCCCHHHHHHHHHhccCCC-CCeEEEEec
Q 042954 51 DSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEV-E--LPSISGFALLTLVMEHDVCK-NIPVIMMSL 125 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv-~--MP~~dGieLL~~Ir~~~~~p-~ipVIvLTs 125 (720)
+.....+....+..|.++.. +.+.+|+...+. ..+|+|-+.- . .-..+ ++.+.++.... + ..++|..++
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d-~~~~~~l~~~~--p~~~~vIaegG 219 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVD-LETTERLAPLI--PSDRLVVSESG 219 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCC-HHHHHHHHHhC--CCCCEEEEEeC
Confidence 33444444444556877655 888888866654 3478876532 1 11223 66677776543 3 368999999
Q ss_pred cCCHHHHHHHHHcCCcEEEeC
Q 042954 126 HDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 126 ~~d~e~~~~Al~~GA~dYL~K 146 (720)
-.+.+.+.++++.||+.+++-
T Consensus 220 I~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 220 IFTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 999999999999999998764
No 139
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=77.73 E-value=14 Score=33.73 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=53.9
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCC-CCeEEE
Q 042954 48 EADDSTRQIISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCK-NIPVIM 122 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p-~ipVIv 122 (720)
|-++.-...+..+|+..||++.... ...+..+.+.. ..||+|.+-..+... ..++.+..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5666677888999999999988643 45556666665 459999999877643 3567777777765 5 777775
Q ss_pred EeccC
Q 042954 123 MSLHD 127 (720)
Q Consensus 123 LTs~~ 127 (720)
=-.+.
T Consensus 86 GG~~~ 90 (125)
T cd02065 86 GGAHP 90 (125)
T ss_pred eCCcC
Confidence 54443
No 140
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=76.95 E-value=29 Score=35.57 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=54.7
Q ss_pred CEEE-EECCHHHHHHHHHcCCCCceEEEEecc-------CCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHH
Q 042954 66 YRVA-AVPDGLAAWETLKCRPHSIDLVLTEVE-------LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCML 137 (720)
Q Consensus 66 yeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~-------MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~ 137 (720)
..+. .+.+.+++...... .+|+|.+... .....++++++.|++.. ++|||...+-.+.+.+.+++.
T Consensus 124 ~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~ 197 (219)
T cd04729 124 CLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSPEQAAKALE 197 (219)
T ss_pred CeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHH
Confidence 5443 46788888766543 4888865321 12234578999998753 689999998889999999999
Q ss_pred cCCcEEEeC
Q 042954 138 KGAADFLIK 146 (720)
Q Consensus 138 ~GA~dYL~K 146 (720)
.||+.++.-
T Consensus 198 ~GadgV~vG 206 (219)
T cd04729 198 LGADAVVVG 206 (219)
T ss_pred CCCCEEEEc
Confidence 999998865
No 141
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=76.22 E-value=24 Score=37.24 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=70.1
Q ss_pred cEEEEEecCHH----HHHH--HHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-----HHHHHH
Q 042954 42 LRVLLVEADDS----TRQI--ISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSISG-----FALLTL 108 (720)
Q Consensus 42 ~rVLIVDDd~~----~r~~--L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-----ieLL~~ 108 (720)
+|+=|+.|+.. ..+. -.+.|-+.||.|.. ..|..-|.++.+. . + -+|+-+.-|-.+| ...|+.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-G--c-aavMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA-G--C-AAVMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T----SEBEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC-C--C-CEEEecccccccCcCCCCHHHHHH
Confidence 56666666542 2333 34567788999987 4555556555543 2 2 3455565564443 477888
Q ss_pred HHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHhhc
Q 042954 109 VMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK-----PVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K-----P~~~~eL~~~l~~vlr~~ 164 (720)
|++.. ++|||+=.+-.....+..||+.|++..|+- --++-.+..+++.+++-.
T Consensus 170 i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AG 227 (247)
T PF05690_consen 170 IIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAG 227 (247)
T ss_dssp HHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHH
Confidence 88774 799999999999999999999999999975 345556666666655433
No 142
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=74.16 E-value=32 Score=36.62 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCEE--EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHH
Q 042954 55 QIISALLRKCGYRV--AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMV 132 (720)
Q Consensus 55 ~~L~~lL~~~gyeV--~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~ 132 (720)
..|++.|+.-...+ ........+.+.+.. ..||.|++|+.=-.++--++...|+.... ..++.|+-....+...+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~-~g~~~lVRvp~~~~~~i 84 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKG-SASAPVVRVPTNEPVII 84 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHH
Confidence 34666666543222 222233455566654 34999999998777776677777766542 45677778888889999
Q ss_pred HHHHHcCCcEEEeCCC-CHHHHHHHHHHH
Q 042954 133 LKCMLKGAADFLIKPV-RRNELRNLWQHV 160 (720)
Q Consensus 133 ~~Al~~GA~dYL~KP~-~~~eL~~~l~~v 160 (720)
.++++.||.+.+.--+ +.++.+.+++.+
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 9999999999987654 456666666553
No 143
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=73.94 E-value=2.4 Score=44.06 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=37.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhcCCC----ccc--hhhhHHHHHHhhhhcCCCccccc
Q 042954 223 YLEAESAYMQNMQGLSQLKCRSASNTC----STD--MERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 223 ~v~~~g~Hv~Rva~~s~~lA~~l~gl~----~~~--~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
+......|...|..++..+++.+ -++ .+. .++..|...+..||+||||||+.
T Consensus 64 ~~GGLl~HtLev~~~a~~l~~~y-~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~~ 121 (218)
T TIGR03760 64 YLGGLLDHTLEVTAAAVRLSKGY-LLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLA 121 (218)
T ss_pred ccchHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Confidence 44566789999999999999766 222 110 11334567899999999999983
No 144
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=73.47 E-value=23 Score=35.31 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=51.4
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCCC--------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCc
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPS--------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA 141 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP~--------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~ 141 (720)
.+.+..++.+.++ ..+|+|.++-..|. ..|+++++++.+.. +++||+++-+- +.+.+.++++.|++
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 3667777766543 34899998776652 24899999998654 46898888666 57888899999998
Q ss_pred EEEe
Q 042954 142 DFLI 145 (720)
Q Consensus 142 dYL~ 145 (720)
++..
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8764
No 145
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=73.39 E-value=3.1 Score=51.20 Aligned_cols=42 Identities=7% Similarity=-0.041 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 226 AESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 226 ~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
....|...|+.++..+|..+ |+ .. +.+.+++|++|||+||..
T Consensus 675 ~L~eHl~~va~lA~~fa~~~-gl-~~------~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 675 ALSDHLDNVFEVAKNFVAKL-GL-GD------LDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EHHHHHHHHHHHHHHHHHHc-Cc-hH------HHHHHHHHHHhcccccCC
Confidence 35779999999999999998 76 32 555688999999999973
No 146
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=73.19 E-value=28 Score=34.99 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=56.2
Q ss_pred CCCEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 64 CGYRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 64 ~gyeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
.+..+ ..+.+.+|+.+.++. .+|+|-++- .+.. |.++++.++... +++|++.+-+- +.+.+.+.++.|++.
T Consensus 96 ~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~--~~~p~~a~GGI-~~~n~~~~~~~G~~~ 167 (190)
T cd00452 96 AGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPF--PQVRFMPTGGV-SLDNAAEWLAAGVVA 167 (190)
T ss_pred cCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhC--CCCeEEEeCCC-CHHHHHHHHHCCCEE
Confidence 34433 347799999888753 489998864 3333 999999998754 67888877666 788999999999877
Q ss_pred EEeCC
Q 042954 143 FLIKP 147 (720)
Q Consensus 143 YL~KP 147 (720)
...-.
T Consensus 168 v~v~s 172 (190)
T cd00452 168 VGGGS 172 (190)
T ss_pred EEEch
Confidence 65543
No 147
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.12 E-value=42 Score=30.21 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=59.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
..+|++||.++..... ++..|+.+.... .-.+.|+.+.- ...+.||+...- +..-+.++..+|+.. +..+
T Consensus 21 ~~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~-d~~n~~~~~~~r~~~--~~~~ 91 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDD-DEENLLIALLARELN--PDIR 91 (116)
T ss_dssp TSEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSS-HHHHHHHHHHHHHHT--TTSE
T ss_pred CCEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCC-HHHHHHHHHHHHHHC--CCCe
Confidence 3589999999988543 345567776632 23445555543 458888887653 234567778888766 7788
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
||+..... +........||+..+
T Consensus 92 ii~~~~~~--~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 92 IIARVNDP--ENAELLRQAGADHVI 114 (116)
T ss_dssp EEEEESSH--HHHHHHHHTT-SEEE
T ss_pred EEEEECCH--HHHHHHHHCCcCEEE
Confidence 88776543 444555678887655
No 148
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=73.07 E-value=39 Score=35.80 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=68.1
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
|++.|+.-... +........+.+.+.. ..||.|++|+.=-.++--++...|+.... ..++.|+-....+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~-~g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKG-SASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhh-cCCCcEEECCCCCHHHHHH
Confidence 45555543322 2222333455566654 34999999998777777677777766542 4567777888889999999
Q ss_pred HHHcCCcEEEeCCC-CHHHHHHHHHHH
Q 042954 135 CMLKGAADFLIKPV-RRNELRNLWQHV 160 (720)
Q Consensus 135 Al~~GA~dYL~KP~-~~~eL~~~l~~v 160 (720)
+++.||.+.+.-=+ +.++.+.+++.+
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 99999999987654 456666665553
No 149
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.52 E-value=36 Score=35.31 Aligned_cols=93 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCG-YRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~g-yeV~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
+...|...+ .-|....+.++|++.++.- ...+++| ++-|-.-.+++.++.|++.. +++. |-.-.-.+.+.+..
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~--p~~~-IGAGTVl~~~~a~~ 82 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEV--PEAL-IGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHC--CCCE-EEEeeccCHHHHHH
Confidence 334555555 4566688888888776532 1225544 44444447999999999875 6543 33333445688899
Q ss_pred HHHcCCcEEEeCC-CCHHHHHHH
Q 042954 135 CMLKGAADFLIKP-VRRNELRNL 156 (720)
Q Consensus 135 Al~~GA~dYL~KP-~~~~eL~~~ 156 (720)
++++||. |++-| ++. ++...
T Consensus 83 a~~aGA~-FivsP~~~~-~vi~~ 103 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTP-PLLKA 103 (212)
T ss_pred HHHcCCC-EEECCCCCH-HHHHH
Confidence 9999997 66666 555 54443
No 150
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=71.58 E-value=2.1 Score=42.73 Aligned_cols=46 Identities=9% Similarity=-0.144 Sum_probs=37.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 222 PYLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 222 ~~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
......+.|...++.+++.+|+.+ +.. ..+..+.+++|||||++.+
T Consensus 90 ~~~~~~~~~s~~~a~~a~~la~~~-~~~--------~~~~a~~~gLL~~iG~l~l 135 (196)
T PF08668_consen 90 FNLERFWRHSLAAAAIARRLAREL-GFD--------DPDEAYLAGLLHDIGKLLL 135 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHC-TCC--------HHHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhHHHH
Confidence 355667889999999999999888 332 2378999999999999964
No 151
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.48 E-value=43 Score=35.98 Aligned_cols=102 Identities=15% Similarity=0.066 Sum_probs=67.3
Q ss_pred HHHHHHHhCCCEE--EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHH
Q 042954 56 IISALLRKCGYRV--AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVL 133 (720)
Q Consensus 56 ~L~~lL~~~gyeV--~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~ 133 (720)
.|++.|+.-...+ ........+.+.+.. ..||.|++|+.=-..+--++...|+.... ..+..|+-....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~-~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHh-cCCCeEEECCCCCHHHHH
Confidence 4566665543222 222233455566654 34999999998776766666666666542 345666677778889999
Q ss_pred HHHHcCCcEEEeCCC-CHHHHHHHHHHH
Q 042954 134 KCMLKGAADFLIKPV-RRNELRNLWQHV 160 (720)
Q Consensus 134 ~Al~~GA~dYL~KP~-~~~eL~~~l~~v 160 (720)
++++.||.+.+.--+ +.++.+.+++.+
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 999999999998765 456666655553
No 152
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.17 E-value=14 Score=39.39 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHD------SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~------d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+++++++|+.. +++|+|+||=+. -.....+|.++|+++.|+-.+..++....+..+-+
T Consensus 76 ~~~~~~~~r~~~--~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 76 VFELVREIREKD--PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHhcC--CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 477788887543 689999998543 33467788999999999988999888877776644
No 153
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=70.17 E-value=16 Score=43.09 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=27.8
Q ss_pred ccCCchhhhhhhhhhH-HHHhhhhh--------ccCCCCcchhhhhh
Q 042954 192 SSHSSDYAASSQKNKG-SEKVSDAQ--------SSRTSSPYLEAESA 229 (720)
Q Consensus 192 s~~~~~~~~~~~~~ke-i~~ls~ar--------S~~T~~~~v~~~g~ 229 (720)
.+..+...+..++.|+ +++..+.. |.+...||+.++..
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa 287 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 287 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence 3445667788888888 88888776 66665788877655
No 154
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=69.49 E-value=38 Score=33.09 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=51.1
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCCC--------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELPS--------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP~--------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
+.+..++.+.+. ..+|.|++....|. ..|++.++++++. .++||+++.+- +.+.+.+++..|++.
T Consensus 102 ~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~~~~Ga~~ 174 (196)
T cd00564 102 THSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEVLAAGADG 174 (196)
T ss_pred CCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCE
Confidence 456677766654 24899998765542 3467889988875 46899988776 468888999999998
Q ss_pred EEeCC
Q 042954 143 FLIKP 147 (720)
Q Consensus 143 YL~KP 147 (720)
+..=.
T Consensus 175 i~~g~ 179 (196)
T cd00564 175 VAVIS 179 (196)
T ss_pred EEEeh
Confidence 86543
No 155
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=69.23 E-value=20 Score=38.78 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=61.6
Q ss_pred EEEEEecCHHHHH---HHHHHH----HhC-CCEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 43 RVLLVEADDSTRQ---IISALL----RKC-GYRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 43 rVLIVDDd~~~r~---~L~~lL----~~~-gyeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
.|||-|++-...- .+...+ +.. +..| +.+.+.++|.+.++. .+|+|++| .|+..+=.+.++.+++..
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFD 233 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccC
Confidence 5777777655443 333333 222 2233 348899999999864 38999999 455444455555565332
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+. .+|-.++--+.+.+.+-...|++-+.
T Consensus 234 --~~-~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 234 --HI-PTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred --CC-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 33 46778888889998888889876544
No 156
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=69.20 E-value=49 Score=33.37 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=56.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR--VA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye--V~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..+|..||.++...+.+++-++..++. +. ...|..+++..+......+|||++|-=.....-.+++..+........
T Consensus 72 a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~ 151 (189)
T TIGR00095 72 AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILED 151 (189)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCC
Confidence 358999999999999999998887653 33 355665665544322223899999974433334566777765443444
Q ss_pred CeEEEEeccC
Q 042954 118 IPVIMMSLHD 127 (720)
Q Consensus 118 ipVIvLTs~~ 127 (720)
--+|++....
T Consensus 152 ~~iiv~E~~~ 161 (189)
T TIGR00095 152 TVLIVVEEDR 161 (189)
T ss_pred CeEEEEEecC
Confidence 5566665433
No 157
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.93 E-value=47 Score=36.28 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCCHH
Q 042954 57 ISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDSIS 130 (720)
Q Consensus 57 L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e 130 (720)
+-..|+..|..|.. +.+.++|..+.+. .+|.|++.-.-. ...-+.++.++++.- ++|||+--+-.+.+
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~---~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAV---SIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHh---CCCEEEECCCCCHH
Confidence 44556666776654 7888888776653 489998854322 223488999998753 58999999999999
Q ss_pred HHHHHHHcCCcEEEeCC
Q 042954 131 MVLKCMLKGAADFLIKP 147 (720)
Q Consensus 131 ~~~~Al~~GA~dYL~KP 147 (720)
.+..++..||+....-.
T Consensus 175 ~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 175 GMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHcCCCEeecch
Confidence 99999999999887653
No 158
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=68.24 E-value=60 Score=34.35 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=68.0
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
|++.|+.-. +-+.....-....+.+.. ..||.|++|+.=...+--++...|+.... ..+.+|+-....+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAP-YPSSPVVRPAIGDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHh-cCCCcEEECCCCCHHHHHH
Confidence 455555432 222223333455566655 34999999998766777777777776532 3456777777778889999
Q ss_pred HHHcCCcEEEeC-CCCHHHHHHHHHHH
Q 042954 135 CMLKGAADFLIK-PVRRNELRNLWQHV 160 (720)
Q Consensus 135 Al~~GA~dYL~K-P~~~~eL~~~l~~v 160 (720)
++..||++.+.- --+.++++.+++.+
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 999999988664 46777777776664
No 159
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.00 E-value=66 Score=32.79 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=55.3
Q ss_pred HhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEe-ccC-CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc
Q 042954 62 RKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTE-VEL-PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK 138 (720)
Q Consensus 62 ~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlD-v~M-P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~ 138 (720)
...|..+.. +.+.+++.+.++ ..+|.|.+- ... ....++++++++++... .++|||...+-.+.+.+.+++..
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~---~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA---LGAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH---cCCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHc
Confidence 445776544 667777666654 347877654 111 11234678888876521 36899999999999999999999
Q ss_pred CCcEEEeC
Q 042954 139 GAADFLIK 146 (720)
Q Consensus 139 GA~dYL~K 146 (720)
||+++++-
T Consensus 194 Ga~gvivG 201 (217)
T cd00331 194 GADAVLIG 201 (217)
T ss_pred CCCEEEEC
Confidence 99999754
No 160
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=67.42 E-value=9.2 Score=43.16 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=65.2
Q ss_pred cEEEEEecCHHHHHHHHH--HHHhCCCE---------------EEEECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHH
Q 042954 42 LRVLLVEADDSTRQIISA--LLRKCGYR---------------VAAVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGF 103 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~--lL~~~gye---------------V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGi 103 (720)
-|.+||||+..+...|.+ +.+..+|- |-+-++..+-+++|.+ ...|+|++|..-- ..--+
T Consensus 203 Gkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~--aGvdvviLDSSqGnS~~qi 280 (503)
T KOG2550|consen 203 GKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQ--AGVDVVILDSSQGNSIYQL 280 (503)
T ss_pred CCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhhh--cCCcEEEEecCCCcchhHH
Confidence 468888888776665543 33444452 1223455667787766 4499999998654 23458
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+++++||+.. |+..||. ..--..+.+...+.+||++.-
T Consensus 281 emik~iK~~y--P~l~Via-GNVVT~~qa~nLI~aGaDgLr 318 (503)
T KOG2550|consen 281 EMIKYIKETY--PDLQIIA-GNVVTKEQAANLIAAGADGLR 318 (503)
T ss_pred HHHHHHHhhC--CCceeec-cceeeHHHHHHHHHccCceeE
Confidence 9999999987 8888772 112234667778899998754
No 161
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=66.85 E-value=22 Score=37.86 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
..+++++.||+.. .++|+++|+-+.- ...+.+|.++|+++.+...+..+++...+..+-+
T Consensus 73 ~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 73 KCFELLKKVRQKH--PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 3567788887653 5789888886654 5667888999999999999888888776666544
No 162
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=66.11 E-value=15 Score=36.91 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=46.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE-ec-cCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT-EV-ELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl-Dv-~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
|||||.....-..+.++|+..|+++....+-...++.+.. ..||.||+ -= .-|..++.+ ...|+... ..+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~~~~~-~~~i~~~~--~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNEAGIS-LEAIRHFA--GKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcchh-HHHHHHhc--cCCCEE
Confidence 8999999999999999999999988775533222333333 34886665 11 112222221 33443332 467888
Q ss_pred EEe
Q 042954 122 MMS 124 (720)
Q Consensus 122 vLT 124 (720)
-+.
T Consensus 77 GIC 79 (188)
T TIGR00566 77 GVC 79 (188)
T ss_pred EEC
Confidence 765
No 163
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=65.83 E-value=24 Score=37.00 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.++++++.+|+.. ++|+++|+-+.- ...+.++.++|+++.+.-.+..+++...++.+.+.
T Consensus 63 ~~~~~~~~vr~~~---~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~ 128 (242)
T cd04724 63 DVLELVKEIRKKN---TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEY 128 (242)
T ss_pred HHHHHHHHHhhcC---CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHc
Confidence 3567777777653 678998887553 55677788999999999777778777666666543
No 164
>PRK04302 triosephosphate isomerase; Provisional
Probab=65.48 E-value=1.2e+02 Score=31.21 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=52.4
Q ss_pred HhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc--CC---C-----CCH-HHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 62 RKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE--LP---S-----ISG-FALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 62 ~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~--MP---~-----~dG-ieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
...|..++. +.+.+++.. +.. ..+|+|-..-. +. + ..+ .++++.||+.. .++|||.-.+-...
T Consensus 111 ~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~--~~~pvi~GggI~~~ 185 (223)
T PRK04302 111 KKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN--PDVKVLCGAGISTG 185 (223)
T ss_pred HHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc--CCCEEEEECCCCCH
Confidence 345776655 555555554 333 34677664321 11 1 112 35666777643 46899998888899
Q ss_pred HHHHHHHHcCCcEEEeCC
Q 042954 130 SMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~KP 147 (720)
+.+.+++..|++++++-.
T Consensus 186 e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 186 EDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHcCCCCEEEEeh
Confidence 999999999999998764
No 165
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=65.17 E-value=1.1e+02 Score=30.42 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=63.4
Q ss_pred ccEEEEEecCH--HHHHHHHHHHHhCCCEEE----EECCHHHHHHHHHcCCCCceEEEEeccC-C----CCCHHHHHHHH
Q 042954 41 VLRVLLVEADD--STRQIISALLRKCGYRVA----AVPDGLAAWETLKCRPHSIDLVLTEVEL-P----SISGFALLTLV 109 (720)
Q Consensus 41 ~~rVLIVDDd~--~~r~~L~~lL~~~gyeV~----~A~sg~eAle~L~~~~~~pDLVLlDv~M-P----~~dGieLL~~I 109 (720)
....+++.+.. .....+.+.+++.|..+. .+.+..++++.+. ..+|.|++...- + ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 34555555443 233445555666665543 4668888887544 348888885321 1 24567888888
Q ss_pred HhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 110 MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 110 r~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++. .++||++.-+- +.+.+.++++.||+.++.-
T Consensus 154 ~~~---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKL---LGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred Hhh---cCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 764 46777765555 5889999999999988664
No 166
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.82 E-value=79 Score=32.43 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=49.6
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeccCCCC-CH--HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSID-LVLTEVELPSI-SG--FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pD-LVLlDv~MP~~-dG--ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+..+.++.+.+ ..++ |+++|+.--++ .| +++++.+++. .++|||+-.+-.+.+.+.+++..||++.+.
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34455555554 3367 77788843321 22 6888888875 468999999999999999999999999886
No 167
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.65 E-value=32 Score=37.38 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=59.6
Q ss_pred EEEEEecCHHHHHHHHHHHH----hCC-C-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTRQIISALLR----KCG-Y-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~----~~g-y-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.|||=|.+-...-.+...++ ... . -.+.+.+.+||.+.+.. .+|+|++| +|.-.+=-+.++.+++.. +
T Consensus 172 ~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~--~ 245 (289)
T PRK07896 172 AALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARA--P 245 (289)
T ss_pred eeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccC--C
Confidence 46766666444333444443 222 2 33448999999999864 48999999 444222234444444433 3
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+ ..|..++.-+.+.+.+-...|++-+-
T Consensus 246 ~-v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 246 T-VLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred C-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 4 46778888899999888899987554
No 168
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.35 E-value=75 Score=33.35 Aligned_cols=90 Identities=12% Similarity=-0.031 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCH---HHHHHHHHcCCCCceEEEEeccCCCC------CHHHHHHHHHhccCCCCCeEEEE
Q 042954 53 TRQIISALLRKCGYRVAAVPDG---LAAWETLKCRPHSIDLVLTEVELPSI------SGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg---~eAle~L~~~~~~pDLVLlDv~MP~~------dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
-...+...+++.|.++..+-+. .+.++.+... ...++++ -.+|+. +-.+.++++|+.. ++.||++=
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~ 191 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEe
Confidence 3445666677778765553222 3444443332 2567777 556652 2245777777664 35676655
Q ss_pred eccCCHHHHHHHHHcCCcEEEeCC
Q 042954 124 SLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.+-.+.+.+.+++++||+.++.-.
T Consensus 192 gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 192 FGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECH
Confidence 555578889999999999999875
No 169
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=64.03 E-value=1e+02 Score=33.50 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=64.1
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEec---------------------------------cC--CCCCHHHHHHHHHhccCC
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEV---------------------------------EL--PSISGFALLTLVMEHDVC 115 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv---------------------------------~M--P~~dGieLL~~Ir~~~~~ 115 (720)
+.+.+||+...+. .+|+|=+=+ .. ....|+++|+++++..
T Consensus 119 ~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-- 193 (283)
T cd04727 119 ARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-- 193 (283)
T ss_pred CCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--
Confidence 8899999888764 388887765 11 1235789999998864
Q ss_pred CCCeEE--EEeccCCHHHHHHHHHcCCcEEEeCC-----CCHHHHHHHHHHHHhhc
Q 042954 116 KNIPVI--MMSLHDSISMVLKCMLKGAADFLIKP-----VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVI--vLTs~~d~e~~~~Al~~GA~dYL~KP-----~~~~eL~~~l~~vlr~~ 164 (720)
.+||| ...+-...+.+.++++.||+.+++=- -++.+....+..++..+
T Consensus 194 -~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 194 -RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred -CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 58997 66777789999999999999997653 24666666666655543
No 170
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=63.81 E-value=75 Score=33.65 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=75.4
Q ss_pred cEEEEEecCHH------HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-----HHHHHH
Q 042954 42 LRVLLVEADDS------TRQIISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSISG-----FALLTL 108 (720)
Q Consensus 42 ~rVLIVDDd~~------~r~~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-----ieLL~~ 108 (720)
+|+=|+-|+.. -.-.-.++|-+.||.|.. ..|.--|.++.+. . -.+|+-+.-|-.+| -..|+.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~-G---caavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEA-G---CAAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhc-C---ceEeccccccccCCcCcCCHHHHHH
Confidence 56666655432 222234567778999987 4455556555433 2 24566666664444 367788
Q ss_pred HHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC-----CCHHHHHHHHHHHHh
Q 042954 109 VMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP-----VRRNELRNLWQHVWR 162 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP-----~~~~eL~~~l~~vlr 162 (720)
|++.. ++|||+=.+-.....+..+|+.|++..|.-. -++-.+..+...+..
T Consensus 177 iie~a---~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 177 IIEEA---DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHhC---CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 88764 8999999999999999999999999998753 344445555555444
No 171
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.73 E-value=24 Score=38.97 Aligned_cols=67 Identities=9% Similarity=-0.100 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.+++.++++.. ..+|+|.+|.-.+... -.+++++||+.. |+++||+= .-.+.+.+..++++||+..+
T Consensus 99 ~~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~--p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 99 YDFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHL--PETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhC--CCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 35566666531 1359999999987544 568999999875 77776662 13367888999999998765
No 172
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=63.27 E-value=1e+02 Score=34.77 Aligned_cols=93 Identities=8% Similarity=0.105 Sum_probs=58.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR-VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye-V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
-+|+.+|-++.....+++-++..+.+ +.. ..|....+... ...||+|++|- ++ ....++..+-+.- ..-.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP--fG-s~~~fld~al~~~--~~~g 141 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP--FG-TPAPFVDSAIQAS--AERG 141 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC--CC-CcHHHHHHHHHhc--ccCC
Confidence 47999999999999999988876543 322 33444443322 23599999997 44 3345666554332 3345
Q ss_pred EEEEeccCCHH----HHHHHH-HcCCcE
Q 042954 120 VIMMSLHDSIS----MVLKCM-LKGAAD 142 (720)
Q Consensus 120 VIvLTs~~d~e----~~~~Al-~~GA~d 142 (720)
+|.+|+-+... ....|+ ++|+.-
T Consensus 142 lL~vTaTD~~~L~G~~~~~~~rkYga~~ 169 (374)
T TIGR00308 142 LLLVTATDTSALCGNYPKSCLRKYGANP 169 (374)
T ss_pred EEEEEecccHHhcCCChHHHHHHhCCcc
Confidence 88888765443 245666 667654
No 173
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.51 E-value=67 Score=36.75 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=53.7
Q ss_pred ccEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEecc--CC-CCCHHHHHHHHHhccC
Q 042954 41 VLRVLLVEADDST---RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE--LP-SISGFALLTLVMEHDV 114 (720)
Q Consensus 41 ~~rVLIVDDd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~--MP-~~dGieLL~~Ir~~~~ 114 (720)
..+|++|+-|+.- ...|..+-+..++.+..+.+..+....+... ..+|+||+|.- .+ +...++.+..+.....
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 4689999988742 2234444444567777777777666666543 35999999973 22 2233444444433211
Q ss_pred CCCCeEEEEeccCCHHHHHHH
Q 042954 115 CKNIPVIMMSLHDSISMVLKC 135 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~A 135 (720)
.+.-.+++|++......+.++
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHH
Confidence 233346777776665544443
No 174
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=62.36 E-value=52 Score=33.96 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=52.3
Q ss_pred HHHhCC-CEEEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHH
Q 042954 60 LLRKCG-YRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCML 137 (720)
Q Consensus 60 lL~~~g-yeV~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~ 137 (720)
.|...+ .-|....+.+++++.++.- ...+.+|=+.++ .-+.+++++++++.. +++.|- .-.-.+.+.+.++++
T Consensus 4 ~l~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~--t~~a~~~i~~l~~~~--~~~~vG-AGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 4 LLREAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLR--TPVALDAIRLLRKEV--PDALIG-AGTVLNPEQLRQAVD 78 (204)
T ss_pred HHhhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHC--CCCEEE-EEeCCCHHHHHHHHH
Confidence 344444 3444566666666554421 122554444443 345788888898765 554333 333456788889999
Q ss_pred cCCcEEEeCCCCHHHHHHH
Q 042954 138 KGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 138 ~GA~dYL~KP~~~~eL~~~ 156 (720)
+||. |++-|.-..++...
T Consensus 79 aGA~-FivsP~~~~~v~~~ 96 (204)
T TIGR01182 79 AGAQ-FIVSPGLTPELAKH 96 (204)
T ss_pred cCCC-EEECCCCCHHHHHH
Confidence 9987 66667444444433
No 175
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=62.31 E-value=42 Score=34.27 Aligned_cols=59 Identities=31% Similarity=0.403 Sum_probs=43.5
Q ss_pred cccCCccEEEEEecCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHcCCCCceEEEEec
Q 042954 36 FLPRMVLRVLLVEADDSTRQIISALLRKCGY--RV-AAVPDGLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 36 ~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gy--eV-~~A~sg~eAle~L~~~~~~pDLVLlDv 95 (720)
.+.|-..++++||-+......|++-++..+. ++ +...+...++..+... ..||||++|-
T Consensus 61 AlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 61 ALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred HHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 4556678999999999999999999988762 22 2344555676666542 2499999996
No 176
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=61.99 E-value=44 Score=33.98 Aligned_cols=100 Identities=23% Similarity=0.354 Sum_probs=56.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHcC-CCCceEEEEecc-CCCCCHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY-------------RVAAVPDGLAAWETLKCR-PHSIDLVLTEVE-LPSISGFA 104 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy-------------eV~~A~sg~eAle~L~~~-~~~pDLVLlDv~-MP~~dGie 104 (720)
-+..||..-+..++.+.++|.-+ || .|..+.+.++|++.+++. ...|-||-++-+ -|..-.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 47899999999999999999754 43 377799999999988652 245899999998 45555666
Q ss_pred HHHHHHhccCCCCCeEEEE--eccCCHHHHHHHHHcCCcEEEeCCCC
Q 042954 105 LLTLVMEHDVCKNIPVIMM--SLHDSISMVLKCMLKGAADFLIKPVR 149 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvL--Ts~~d~e~~~~Al~~GA~dYL~KP~~ 149 (720)
-++++.... +-|++++ |++.-.+.+ ++ ..||+..|+.
T Consensus 123 ~lr~~l~~~---~~P~LllFGTGwGL~~ev---~~--~~D~iLePI~ 161 (185)
T PF09936_consen 123 ELRRMLEEE---DRPVLLLFGTGWGLAPEV---ME--QCDYILEPIR 161 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---HHH---HT--T-SEEB--TT
T ss_pred HHHHHHhcc---CCeEEEEecCCCCCCHHH---HH--hcCeeEcccc
Confidence 666554322 3455555 776544433 32 4689999964
No 177
>PRK05637 anthranilate synthase component II; Provisional
Probab=61.94 E-value=25 Score=36.21 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=47.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE--eccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT--EVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl--Dv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|.+|||||....+...|..+|+..|+.+..+..... ++.+.. ..||.||+ ...-|...+ ...+.|+... ..+
T Consensus 1 ~~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIlsgGPg~~~d~~-~~~~li~~~~--~~~ 74 (208)
T PRK05637 1 MTHVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICLSPGPGHPRDAG-NMMALIDRTL--GQI 74 (208)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEEeCCCCCHHHhh-HHHHHHHHHh--CCC
Confidence 458999999999999999999999987777554322 233322 34787777 333332222 2233443322 357
Q ss_pred eEEEEe
Q 042954 119 PVIMMS 124 (720)
Q Consensus 119 pVIvLT 124 (720)
||+-+.
T Consensus 75 PiLGIC 80 (208)
T PRK05637 75 PLLGIC 80 (208)
T ss_pred CEEEEc
Confidence 887665
No 178
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=61.86 E-value=59 Score=35.32 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhccCCCCCeEE--EEeccCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHhhc
Q 042954 101 SGFALLTLVMEHDVCKNIPVI--MMSLHDSISMVLKCMLKGAADFLIK-----PVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVI--vLTs~~d~e~~~~Al~~GA~dYL~K-----P~~~~eL~~~l~~vlr~~ 164 (720)
-|+++|+++++.. .+||| ...+-...+.+..+++.||+.+++= .-++.+....+..++..+
T Consensus 184 ~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 184 VPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred CCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 5899999998863 58998 6777778999999999999998654 335777666666666654
No 179
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=61.42 E-value=44 Score=37.18 Aligned_cols=103 Identities=13% Similarity=0.179 Sum_probs=63.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHh-C-CCEEEE-ECC-HHHHHHHHHcCCCCceE-EEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRK-C-GYRVAA-VPD-GLAAWETLKCRPHSIDL-VLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~-~-gyeV~~-A~s-g~eAle~L~~~~~~pDL-VLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
+||.||-- -. .......+.. . +++++. ++. .+.|.+..+. +.+ +..|+ -+++ . . +
T Consensus 4 ~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~----~gi~~y~~~-------eell----~-d--~ 63 (343)
T TIGR01761 4 QSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHR----LGVPLYCEV-------EELP----D-D--I 63 (343)
T ss_pred cEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH----hCCCccCCH-------HHHh----c-C--C
Confidence 68999997 44 4444444444 3 588776 443 3334444333 332 12222 1222 2 1 5
Q ss_pred CCeEEEEe----ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMS----LHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLT----s~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++-+|.+. .....+.+.+|+++|.+=++.||+..+|..+.++.+-+..
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g 115 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQG 115 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcC
Confidence 66666662 2345788999999999999999999888888777765543
No 180
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.34 E-value=43 Score=36.37 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=59.4
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCC--CEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALL----RKCG--YRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL----~~~g--yeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
-|||-|.+-...-.+...+ +..+ ..|.. +.+.+||.+.+.. .+|+|.+|-.-| .+=-+.++.+++..
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~-e~l~~av~~~~~~~-- 241 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPV-DLMQQAVQLIRQQN-- 241 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHHHhcC--
Confidence 5777777655443444443 2334 33444 8899999998863 489999993222 12123344444333
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++++ |..++--+.+.+.+....|++..-+
T Consensus 242 ~~i~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 242 PRVK-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred CCeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 5555 5556666788888888999876543
No 181
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.10 E-value=72 Score=33.05 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe--EEEEeccCCHHHHHHH
Q 042954 59 ALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP--VIMMSLHDSISMVLKC 135 (720)
Q Consensus 59 ~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip--VIvLTs~~d~e~~~~A 135 (720)
..|...+ .-|+...+.++++.+++.- ..--|=++++-|-.-..++.++.|++.. ++-| +|=.-.-.+.+.+.+|
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGaGTV~~~~~~~~a 84 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTNPFASEVIKELVELY--KDDPEVLIGAGTVLDAVTARLA 84 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCCccHHHHHHHHHHHc--CCCCCeEEeeeeCCCHHHHHHH
Confidence 4455555 3555577777777665431 1123445566666666889999998764 3212 2333334567888999
Q ss_pred HHcCCcEEEeCCCCHHHHHHH
Q 042954 136 MLKGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 136 l~~GA~dYL~KP~~~~eL~~~ 156 (720)
+++||. |++-|.-..++...
T Consensus 85 ~~aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 85 ILAGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred HHcCCC-EEECCCCCHHHHHH
Confidence 999997 66677555555443
No 182
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=60.75 E-value=99 Score=33.22 Aligned_cols=110 Identities=17% Similarity=0.106 Sum_probs=67.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCG--YRVAAV--PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
+++||.||----.........|...+ ++++.+ .+.+.|.+..+... +.-+..| +..+-+.. .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~-~ 67 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADP-D 67 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCC-C
Confidence 46799999877666555555665553 466665 45555555554422 2212222 22333322 1
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhh
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRR 163 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~ 163 (720)
.++-+|........+.+.+|+++|.+=|+-|| .+.+|....++.+-+.
T Consensus 68 iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 68 IDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred CCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 34445544455567889999999999999999 5678888777766554
No 183
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.74 E-value=69 Score=34.51 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=61.5
Q ss_pred cEEEEEe--cC---HHHHHHHHHHHHhCCCEEEEECCHHHHHHHH------HcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVE--AD---DSTRQIISALLRKCGYRVAAVPDGLAAWETL------KCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVD--Dd---~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L------~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
|||.||- .. ......+..+|+..|+++.......+.+... ......+|+||+ -|.|| .+++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDG-TlL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDG-TILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcH-HHHHHHH
Confidence 4677772 22 2345566667778888887754322211100 000123677665 26777 3566666
Q ss_pred hccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 111 EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
.. ...+||+.+.. |=.+||. .++++++...+..++++.-
T Consensus 76 -~~-~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 -KT-KKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred -hc-CCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 32 25789887763 4347775 6788999999999987754
No 184
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=60.68 E-value=61 Score=33.33 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=56.4
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHH
Q 042954 59 ALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCML 137 (720)
Q Consensus 59 ~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~ 137 (720)
..|...+ +-|....+.+++++.++.- ..-.+=++++.+-..++.+.++.|++.. +..-+|=.-.--+.+.+..|+.
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~~ 81 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLAD 81 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHHH
Confidence 3444444 3444566677766655421 1123445666676677888999998765 3212222233445678889999
Q ss_pred cCCcEEEeCCCCHHHHHHHHH
Q 042954 138 KGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 138 ~GA~dYL~KP~~~~eL~~~l~ 158 (720)
+||. |+.-|....++....+
T Consensus 82 aGA~-fivsp~~~~~v~~~~~ 101 (206)
T PRK09140 82 AGGR-LIVTPNTDPEVIRRAV 101 (206)
T ss_pred cCCC-EEECCCCCHHHHHHHH
Confidence 9995 6666755555544433
No 185
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.68 E-value=1.2e+02 Score=31.06 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=61.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhcc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~ 113 (720)
...+++-+.. . ..+.+.++..+..+.. +.+..++..+.+ ...|.|+++-.-++ ...+++++++++..
T Consensus 81 ~d~v~l~~~~-~-~~~~~~~~~~~i~~i~~v~~~~~~~~~~~---~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~ 155 (236)
T cd04730 81 VPVVSFSFGP-P-AEVVERLKAAGIKVIPTVTSVEEARKAEA---AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV 155 (236)
T ss_pred CCEEEEcCCC-C-HHHHHHHHHcCCEEEEeCCCHHHHHHHHH---cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh
Confidence 3444444442 1 2233344444555544 556666655443 23788887643211 24577888888753
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++||++.-+-...+.+.+++..||++.++-
T Consensus 156 ---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 156 ---DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ---CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 689999888888899999999999988765
No 186
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=60.58 E-value=81 Score=33.19 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred EEecCHHHHHHHHHHHHhCCCEEEE-----EC--CHHHHHHHHHcCCCCceEEEEeccCCCC--CHHHHHHHHHhccCCC
Q 042954 46 LVEADDSTRQIISALLRKCGYRVAA-----VP--DGLAAWETLKCRPHSIDLVLTEVELPSI--SGFALLTLVMEHDVCK 116 (720)
Q Consensus 46 IVDDd~~~r~~L~~lL~~~gyeV~~-----A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~--dGieLL~~Ir~~~~~p 116 (720)
+..|.+.+.+.++.+- ..+..|.. .. +..+..+.+.. ...|.|.+|.+.++. -.++.+++|++.. +
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~ 190 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEEF--N 190 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHhc--C
Confidence 4456666666666665 33443332 11 22233344544 448999999877764 3488999998864 3
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+|||..-+-.+.+.+.+++..||+...+
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 58999988888999999999999998764
No 187
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=60.41 E-value=7.1 Score=45.41 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHhc---CCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 225 EAESAYMQNMQGLSQLKCRSAS---NTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~---gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
.++..|..+|..++..|-..+. ++++. +...|+.||+|||||+..
T Consensus 321 ~~d~~ha~~v~~~a~~Lf~~l~~~~~l~~~------~~~LL~~Aa~LhdiG~~I 368 (496)
T PRK11031 321 QIDTEQAQRVAKLADNFLQQVENEWHLEPR------SRELLISACQLHEIGLSV 368 (496)
T ss_pred CcCHHHHHHHHHHHHHHHHhhhhhcCCChH------HHHHHHHHHHHHhcCCcc
Confidence 4567899999999998765542 45444 778999999999999974
No 188
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=60.17 E-value=30 Score=34.88 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=59.7
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC-C----CCHHHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 57 ISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP-S----ISGFALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 57 L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP-~----~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
+...|+..||.+.. +..+...++.+.. ..||.|-+|..+. . .....+++.|.......++ -|+.++-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~via~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL-KVVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC-eEEEEecCCH
Confidence 44556777998776 5666777777766 4599999997543 2 2335666666554322344 4458888889
Q ss_pred HHHHHHHHcCC---cE-EEeCCCC
Q 042954 130 SMVLKCMLKGA---AD-FLIKPVR 149 (720)
Q Consensus 130 e~~~~Al~~GA---~d-YL~KP~~ 149 (720)
+....+.+.|+ .+ |+.||..
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~ 237 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLP 237 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCC
Confidence 99999999997 33 4556654
No 189
>PRK07695 transcriptional regulator TenI; Provisional
Probab=59.59 E-value=2e+02 Score=28.97 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=48.8
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEE
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADF 143 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY 143 (720)
+.+.+++.+..+ ..+|.|++.-..|. ..|++.+++++... .+|||.+-+- +.+.+.+++..|++.+
T Consensus 102 ~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 102 VHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 667777766543 34899887654332 23678899887753 5899988777 7888999999998877
Q ss_pred E
Q 042954 144 L 144 (720)
Q Consensus 144 L 144 (720)
.
T Consensus 175 a 175 (201)
T PRK07695 175 A 175 (201)
T ss_pred E
Confidence 3
No 190
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=59.00 E-value=1.2e+02 Score=32.52 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=46.4
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE------EEeCCCCHHHHHHHHHHHHhhccc
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD------FLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d------YL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
++++.+|++.- ++|||..-+-.+.+.+.+++..||+. ++.+|.-..++..-|...++..-+
T Consensus 223 l~~v~~i~~~~---~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 223 LRMVYDVYKMV---DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHHhcC---CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 36777777653 58999999999999999999999875 566786666677777666665543
No 191
>PLN02591 tryptophan synthase
Probab=58.90 E-value=32 Score=36.57 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+.+++++++|+. .++|+|+||=+.. .....+|-++|+++.|.-.+..+|....+..+.+.
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~ 130 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKN 130 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHc
Confidence 357778888743 5789999986542 34577888999999999999998888777766443
No 192
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.88 E-value=95 Score=33.63 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=64.9
Q ss_pred EEEEEecCHHHHHHHHHHHHhC----C-CEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTRQIISALLRKC----G-YRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~----g-yeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.|||-|++-... .+...++.. . ..|. .+.+.+||.+.++. .+|+|++|=..|. +=-++++.+++....+
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRE 230 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCC
Confidence 489999987665 566665432 1 2343 38999999999874 4799999976543 2234444454432112
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
-..|..++.-+.+.+.+....|++-+-+
T Consensus 231 -~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 231 -RVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred -CEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3467788888899998888999876543
No 193
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=58.38 E-value=12 Score=37.99 Aligned_cols=49 Identities=12% Similarity=0.210 Sum_probs=36.7
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE 94 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD 94 (720)
|||||.....-..|...|++.|+++......+..++.+.. ..||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEEC
Confidence 8999999999999999999999888876654333344433 347877764
No 194
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.05 E-value=1.2e+02 Score=35.06 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=57.4
Q ss_pred CccEEEEEecCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEec--cCC-CCCHHHHHHHHHhcc
Q 042954 40 MVLRVLLVEADDSTR---QIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEV--ELP-SISGFALLTLVMEHD 113 (720)
Q Consensus 40 m~~rVLIVDDd~~~r---~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv--~MP-~~dGieLL~~Ir~~~ 113 (720)
...+|+||+-|..-. ..+.......|..+..+.+..++.+.+.. ..+|+||+|. .++ +..-++-+..+....
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 346899999887322 23333434456666666667777777764 4599999997 222 122333333332221
Q ss_pred --CCCCCeEEEEeccCCHHHHHHHHH----cCCcEEE
Q 042954 114 --VCKNIPVIMMSLHDSISMVLKCML----KGAADFL 144 (720)
Q Consensus 114 --~~p~ipVIvLTs~~d~e~~~~Al~----~GA~dYL 144 (720)
..+.-.+++|++....+.+.++++ .|+++.|
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 113346777877776655554442 4455543
No 195
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.63 E-value=1e+02 Score=35.37 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=55.2
Q ss_pred ccEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCC--CCceEEEEecc--CCCCCHHHHHHHHHhcc
Q 042954 41 VLRVLLVEADDST---RQIISALLRKCGYRVAAVPDGLAAWETLKCRP--HSIDLVLTEVE--LPSISGFALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~--~~pDLVLlDv~--MP~~dGieLL~~Ir~~~ 113 (720)
..+|++++-|..- ...|+..-...|+.+..+.+..+..+.+.... ..+|+||+|.- ++.. .+.++++++..
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd--~~lm~EL~~~l 346 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA--SETVEEMIETM 346 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcC--HHHHHHHHHHH
Confidence 4689999988653 33344444456788887777666555543211 24899999973 3321 23333332221
Q ss_pred --CCCCCeEEEEeccCCH---HHHHHHH-HcCCcEEEe
Q 042954 114 --VCKNIPVIMMSLHDSI---SMVLKCM-LKGAADFLI 145 (720)
Q Consensus 114 --~~p~ipVIvLTs~~d~---e~~~~Al-~~GA~dYL~ 145 (720)
..|+-.++++++.... ..+.+.+ ..|.+.+|.
T Consensus 347 k~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~ 384 (436)
T PRK11889 347 GQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 384 (436)
T ss_pred hhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEE
Confidence 1244445666554332 3344444 346666643
No 196
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=56.92 E-value=75 Score=32.15 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=46.8
Q ss_pred HHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeccCCCCC-------HHHHHHHHHhccCCCCC-eEEEEeccC
Q 042954 59 ALLRKCGYRVAA-V--PDGLAAWETLKCRPHSIDLVLTEVELPSIS-------GFALLTLVMEHDVCKNI-PVIMMSLHD 127 (720)
Q Consensus 59 ~lL~~~gyeV~~-A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-------GieLL~~Ir~~~~~p~i-pVIvLTs~~ 127 (720)
+.++..|..+.. + .+..+.++.+.. .+|.|+++-.-|+.+ +++.++++++......+ ++|++.+--
T Consensus 103 ~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 103 QLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 344445554433 3 233454444432 267777766545544 34555555543211122 456566666
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
..+.+.++++.|++.++.-
T Consensus 180 ~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 180 NADNIKECAEAGADVFVAG 198 (220)
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 6688888999999877654
No 197
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=56.90 E-value=78 Score=40.95 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=71.4
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCC-CCCH-HHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELP-SISG-FALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP-~~dG-ieLL~~Ir~ 111 (720)
.-+|||. |-+..=..++.-+|+..||+|+... ..++.++.+++ +.+|+|-+-..|. .+.. .++++.|++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3588888 7777778888999999999998743 45667777766 5599999987775 4444 478888888
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHH---HHcCCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKC---MLKGAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~A---l~~GA~dYL~ 145 (720)
.. ..++|++=-+-.+.+.+..- .-.||+.|-.
T Consensus 810 ~g--~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 810 RG--ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred cC--CCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 75 56887766655555554321 2238777764
No 198
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=56.52 E-value=1.8e+02 Score=32.32 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=65.6
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHcCCCCceEEEEec----------cCC-CCC--H
Q 042954 43 RVLLVE----ADDSTRQIISALLRKCG-YRVAA--VPDGLAAWETLKCRPHSIDLVLTEV----------ELP-SIS--G 102 (720)
Q Consensus 43 rVLIVD----Dd~~~r~~L~~lL~~~g-yeV~~--A~sg~eAle~L~~~~~~pDLVLlDv----------~MP-~~d--G 102 (720)
.++.|| +...+.+.++.+=+.+. ..|.. +.+.++|..+++. .+|.|++-+ ... +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 677776 23334444444444443 34443 7899999888763 488876432 111 122 5
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..+..+++.. .+|||.-.+-.....+.+|+..||+.+..-
T Consensus 190 l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 66688887653 589999999999999999999999988765
No 199
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=56.25 E-value=1.1e+02 Score=34.80 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=67.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+++||-|.+. +..|+++.+.....+...-..++..+++.. .||+|+=-. .+.-|+-+++.+.. .+||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA~-----G~PV 358 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMAS-----GVPV 358 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHHc-----CCCE
Confidence 357788876553 344555554433333334455677777754 677775332 23346667777642 4788
Q ss_pred EEEeccCCHHHHHHHHHc---CCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 121 IMMSLHDSISMVLKCMLK---GAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~---GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
|.- .... ..+.+.. |-.+|+..|-+.++|...|..++.
T Consensus 359 I~s-~~gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 359 VAA-RAGG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EEc-CCCC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 843 3333 2344555 889999999999999999988775
No 200
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=55.99 E-value=85 Score=40.74 Aligned_cols=101 Identities=16% Similarity=0.199 Sum_probs=70.7
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCC-CCCH-HHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELP-SISG-FALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP-~~dG-ieLL~~Ir~ 111 (720)
..+|||. |-+..=..++..+|+..||+|+... ..++.++.+++ +.+|+|.+-..|. .+.. .++++.|++
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~ 828 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMER 828 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHh
Confidence 3588888 7788888889999999999998743 45667777766 5599999988775 4443 478888888
Q ss_pred ccCCCCCeEEEEeccCCHHH-HHHH-HHc-CCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISM-VLKC-MLK-GAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~-~~~A-l~~-GA~dYL~ 145 (720)
.. .+++|++--+..+... ..++ -.+ |++.|..
T Consensus 829 ~g--~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~ 863 (1229)
T PRK09490 829 QG--FTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT 863 (1229)
T ss_pred cC--CCCeEEEEeeccchhhhhhhhhhcccCCcEEec
Confidence 75 6788777665555433 2222 122 7777754
No 201
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=55.77 E-value=1.5e+02 Score=32.89 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=76.6
Q ss_pred cEEEEEecCHHHHHHHH------HHHHhCCCEE--EEECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIIS------ALLRKCGYRV--AAVPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTL 108 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~------~lL~~~gyeV--~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~ 108 (720)
+|+=|+-|+.....-+. +.|-+.||.| +.+.|...|.++... .+ +.++-+--| +..--+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHH
Confidence 56666665544333222 2233458988 346677777766553 24 444443222 2334577888
Q ss_pred HHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHhhcc
Q 042954 109 VMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI-----KPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~-----KP~~~~eL~~~l~~vlr~~~ 165 (720)
+.+. +.+|||+=.+-...+.+..||+.|+++.|. |--++-.+..+++.+++-.+
T Consensus 244 ~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 244 IVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred HHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 8876 469999999999999999999999999875 45667777777777765443
No 202
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.69 E-value=65 Score=35.03 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=61.5
Q ss_pred EEEEE--ecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------------HHcCCCCceEEEEeccCCCCCHHH
Q 042954 43 RVLLV--EADDST---RQIISALLRKCGYRVAAVPDGLAAWET-------------LKCRPHSIDLVLTEVELPSISGFA 104 (720)
Q Consensus 43 rVLIV--DDd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~-------------L~~~~~~pDLVLlDv~MP~~dGie 104 (720)
+|.|| -+.+.. ...+..+|+..|+++.......+.+.. .......+|+||+ -|.|| .
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T 76 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDG-T 76 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcH-H
Confidence 56666 233333 445566677778888775432222110 0111123677665 27787 5
Q ss_pred HHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+|+..+.... ..+||+-+- .|-.+||. .++++++...|..++++..
T Consensus 77 ~L~aa~~~~~-~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 FLRTATYVGN-SNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHhcC-CCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 6666665432 468888553 36678886 4788999999999988764
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=55.54 E-value=1.3e+02 Score=33.40 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=55.6
Q ss_pred CccEEEEEecCH---HHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHcCCCCceEEEEecc--CCCCCHHHHHH
Q 042954 40 MVLRVLLVEADD---STRQIISALLRKCGYRVAAVPDG-------LAAWETLKCRPHSIDLVLTEVE--LPSISGFALLT 107 (720)
Q Consensus 40 m~~rVLIVDDd~---~~r~~L~~lL~~~gyeV~~A~sg-------~eAle~L~~~~~~pDLVLlDv~--MP~~dGieLL~ 107 (720)
...+|+|++-|. .....++.+....|..+.....+ .+|++.++. ..+|+||+|.. ++. -.+++.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~~~--~~~lm~ 242 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRMHT--DANLMD 242 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCccCC--cHHHHH
Confidence 346899998773 33444555556667666543322 244555544 34899999984 331 233444
Q ss_pred HHHhcc--CCCCCeEEEEeccCCHHHHH--HHH--HcCCcEEEe
Q 042954 108 LVMEHD--VCKNIPVIMMSLHDSISMVL--KCM--LKGAADFLI 145 (720)
Q Consensus 108 ~Ir~~~--~~p~ipVIvLTs~~d~e~~~--~Al--~~GA~dYL~ 145 (720)
+|+... ..|+..++++.+....+.+. +.+ ..|+++++.
T Consensus 243 eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 243 ELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 433221 12666677776655444432 333 256666643
No 204
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=55.24 E-value=38 Score=35.04 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHhccCCCCCeEEEEecc------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLH------DSISMVLKCMLKGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~------~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~ 156 (720)
+++++.|... -.+|||+|+-| .....+..|-++||++||.-.+.++|-...
T Consensus 84 emvk~ar~~g--vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~ 140 (268)
T KOG4175|consen 84 EMVKEARPQG--VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETL 140 (268)
T ss_pred HHHHHhcccC--cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHH
Confidence 4444444332 46899999865 456677888899999999999988886543
No 205
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=55.03 E-value=1e+02 Score=34.52 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=53.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR---------------VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALL 106 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye---------------V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL 106 (720)
.+++||-+.+.-...+.++++..|+. |.......+...++.. .||+++--.....-|.-++
T Consensus 263 ~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~~l 338 (425)
T PRK05749 263 LLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHNPL 338 (425)
T ss_pred cEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCCHH
Confidence 45666666554434555555555542 2222223333344422 4665552222112344455
Q ss_pred HHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 107 TLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+.+.. .+|||+--...+...+.+.+.. .+++..|-+.++|...|..++.
T Consensus 339 EAma~-----G~PVI~g~~~~~~~e~~~~~~~--~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 339 EPAAF-----GVPVISGPHTFNFKEIFERLLQ--AGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHh-----CCCEEECCCccCHHHHHHHHHH--CCCeEEECCHHHHHHHHHHHhc
Confidence 55532 4677753222333333333321 2455567778888888877654
No 206
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=54.90 E-value=1.3e+02 Score=35.41 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=69.1
Q ss_pred CcccccccccccccCCccEEEEE--ecCHHHHHH---HHHHHH-hCCCEEEEECCHHHHHH----------------HHH
Q 042954 25 SSEVVRTRWESFLPRMVLRVLLV--EADDSTRQI---ISALLR-KCGYRVAAVPDGLAAWE----------------TLK 82 (720)
Q Consensus 25 ~~~~~~~~~~~~l~~m~~rVLIV--DDd~~~r~~---L~~lL~-~~gyeV~~A~sg~eAle----------------~L~ 82 (720)
+..+....|... +.+|+|| -+.+..... |...|+ ..|++|.........+. .+.
T Consensus 182 ~~~~~~l~w~~~----p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~ 257 (508)
T PLN02935 182 SSKQISLKWESD----PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEIL 257 (508)
T ss_pred CCceEEeeecCC----CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhh
Confidence 345555577654 3488888 344444444 444555 46787776443222210 000
Q ss_pred cCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 83 CRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 83 ~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.....+|+||+ -|.|| .+|+..+... ...+||+-+ +.|=.+||+ ++..+++...|..+++
T Consensus 258 ~l~~~~DlVIs----iGGDG-TlL~Aar~~~-~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 258 LLHTKVDLVIT----LGGDG-TVLWAASMFK-GPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILK 317 (508)
T ss_pred hcccCCCEEEE----ECCcH-HHHHHHHHhc-cCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHc
Confidence 00013566665 27787 5666666543 246787744 578889985 6899999999999988
Q ss_pred hcc
Q 042954 163 RHS 165 (720)
Q Consensus 163 ~~~ 165 (720)
+..
T Consensus 318 G~y 320 (508)
T PLN02935 318 GPI 320 (508)
T ss_pred CCc
Confidence 754
No 207
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.78 E-value=1.7e+02 Score=34.38 Aligned_cols=101 Identities=12% Similarity=0.173 Sum_probs=68.9
Q ss_pred ccEEEEEecCH----HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEec--------------cCCC
Q 042954 41 VLRVLLVEADD----STRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEV--------------ELPS 99 (720)
Q Consensus 41 ~~rVLIVDDd~----~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv--------------~MP~ 99 (720)
...|++||--. .+.+.++.+=+.+ +..|. .+.+.++|..+++. .+|.|.+-+ ..|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 46788888432 2223444443344 34554 38899999888763 489887642 2234
Q ss_pred CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 100 ~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
..-+..+..+.+. ..+|||.-.+-.....+.+|+.+||+..+.-.
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~vGs 381 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMMGS 381 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 4456667777654 36899999999999999999999999887653
No 208
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=54.33 E-value=41 Score=36.04 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLHD------SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~~------d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+.+++++++|+. .++|+|+||=+. -...+.+|.++|+++.+.-.+..+|....+..+.+
T Consensus 78 ~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 78 KILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 357777888743 578999998654 24467889999999999999988887766666543
No 209
>PRK00811 spermidine synthase; Provisional
Probab=54.26 E-value=67 Score=34.50 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=46.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC----EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCC-----HHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY----RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSIS-----GFALLTLV 109 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy----eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-----GieLL~~I 109 (720)
.+|.+||=++.+.+..++.|... +. +|. ...|+.+.+.. ....||+||+|..-|..- .-++++.+
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~ 177 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPVGPAEGLFTKEFYENC 177 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCCCchhhhhHHHHHHHH
Confidence 48999999999999999988642 11 232 35666654433 235699999998655322 24666777
Q ss_pred Hhcc
Q 042954 110 MEHD 113 (720)
Q Consensus 110 r~~~ 113 (720)
++..
T Consensus 178 ~~~L 181 (283)
T PRK00811 178 KRAL 181 (283)
T ss_pred HHhc
Confidence 6654
No 210
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=54.21 E-value=1.1e+02 Score=33.64 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=56.7
Q ss_pred HHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEe-ccCC-----CC-CHHHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 58 SALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTE-VELP-----SI-SGFALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 58 ~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlD-v~MP-----~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
.+.|+..|..|.. +.+..+|...++. .+|+||+. ..-- .. +-+.|+..++... ++|||.--+-.+.
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPViaAGGI~dg 202 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPVIAAGGIADG 202 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--SH
T ss_pred HHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhc---CCcEEEecCcCCH
Confidence 3456777876655 9999999887764 38998876 2111 12 2478888888764 5999999999999
Q ss_pred HHHHHHHHcCCcEEEeC
Q 042954 130 SMVLKCMLKGAADFLIK 146 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~K 146 (720)
..+..++..||++...=
T Consensus 203 ~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 203 RGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHCT-SEEEES
T ss_pred HHHHHHHHcCCCEeecC
Confidence 99999999999998764
No 211
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=54.19 E-value=1.2e+02 Score=36.49 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=71.4
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 56 IISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
..-..|++.||.|.. +.++...+..|.. ..+|.|-+|..+- +.....+++.|......-++. |+.++-.+
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-via~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT-VVAEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-EEEEcCCC
Confidence 344467888998876 7788888888876 4599999998542 122345666665443223454 44778888
Q ss_pred HHHHHHHHHcCCc----EEEeCCCCHHHHHHHHHH
Q 042954 129 ISMVLKCMLKGAA----DFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 129 ~e~~~~Al~~GA~----dYL~KP~~~~eL~~~l~~ 159 (720)
.+....+.+.|++ .|+.||...++|...|+.
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 8888888899985 357799999999886554
No 212
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.71 E-value=1.4e+02 Score=32.45 Aligned_cols=104 Identities=24% Similarity=0.268 Sum_probs=61.2
Q ss_pred cEEEEEe--cCHH---HHHHHHHHHHhCCCEEEEECCHHHHHH-----HH--HcCCCCceEEEEeccCCCCCHHHHHHHH
Q 042954 42 LRVLLVE--ADDS---TRQIISALLRKCGYRVAAVPDGLAAWE-----TL--KCRPHSIDLVLTEVELPSISGFALLTLV 109 (720)
Q Consensus 42 ~rVLIVD--Dd~~---~r~~L~~lL~~~gyeV~~A~sg~eAle-----~L--~~~~~~pDLVLlDv~MP~~dGieLL~~I 109 (720)
.+|+||- +.+. ..+.+...|+..++++.......+.+. .. ......+|+||+ -|.|| .+++.+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l~~~ 79 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDG-SLLGAA 79 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcH-HHHHHH
Confidence 3677772 3333 444566667777888776543222111 00 001123677765 26677 345555
Q ss_pred HhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 110 MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 110 r~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+... ..++||+-+-. |=.+||. .++.+++...|..++++..
T Consensus 80 ~~~~-~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 80 RALA-RHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHhc-CCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCCc
Confidence 4432 25788886543 5667884 6889999999999987653
No 213
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=53.66 E-value=53 Score=32.80 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=38.1
Q ss_pred ceEEEEeccCCCCCH-------HHHHHHHHhccC--CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 88 IDLVLTEVELPSISG-------FALLTLVMEHDV--CKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 88 pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~--~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+|.|+++-..|+.+| ++.++++++... .+++||++.-+-. .+.+.++++.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 688877765565433 455666655420 1247776655544 588889999999988765
No 214
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=53.63 E-value=78 Score=34.05 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=59.9
Q ss_pred EEEEEecCHHHHHHH--HHHH---H-hCC-CE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 43 RVLLVEADDSTRQII--SALL---R-KCG-YR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 43 rVLIVDDd~~~r~~L--~~lL---~-~~g-ye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
.|||-|++-.+.-.+ .+.+ + ..+ .. .+.+.+.+|+.+.++ ...|+|.+|-.-|. +=-++++.++...
T Consensus 154 ~vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~---~gaD~I~ld~~~p~-~l~~~~~~~~~~~- 228 (272)
T cd01573 154 TILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAE---AGADILQLDKFSPE-ELAELVPKLRSLA- 228 (272)
T ss_pred ceEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHHhccC-
Confidence 488888775444322 2222 2 222 22 344889999988875 34899999965553 1124555555432
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+++|++++- --+.+.+.+..+.|++.+..
T Consensus 229 -~~i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 229 -PPVLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred -CCceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 467766554 45788889999999988754
No 215
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.52 E-value=74 Score=32.79 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=34.6
Q ss_pred EeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 042954 93 TEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155 (720)
Q Consensus 93 lDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~ 155 (720)
+++.|-.-..++.++.+++.. +++ +|=.-.-.+.+.+.+|+++||. |++-|.-..++..
T Consensus 33 iEit~~tp~a~~~I~~l~~~~--~~~-~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 33 IEITLRTPAALDAIRAVAAEV--EEA-IVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred EEEeCCCccHHHHHHHHHHHC--CCC-EEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 344444445677777777654 442 2223334567788888888886 6666644444443
No 216
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=53.45 E-value=1.7e+02 Score=33.99 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=65.6
Q ss_pred ccEEEEEecC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCCC------------CC
Q 042954 41 VLRVLLVEAD----DSTRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELPS------------IS 101 (720)
Q Consensus 41 ~~rVLIVDDd----~~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP~------------~d 101 (720)
...+++||.. ..+...++.+-... +..|. .+.+.++|..+++. .+|.|.+-+. |+ ..
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGVP 315 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCcC
Confidence 4678888854 23444444444443 33433 37788889888764 3788865331 21 12
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
-++++..+++......+|||.=.+-.....+.+|+.+||+-.+.--
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~ 361 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGS 361 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECc
Confidence 3456655554322246898888888999999999999998877643
No 217
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=53.41 E-value=59 Score=32.70 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=59.6
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC-C----CCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 56 IISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP-S----ISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP-~----~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
..-..|+..||.+.. +..+...+..+.. ..||.|-+|..+- . .....+++.|......-.+. |+.++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-via~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ-VVAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-EEEecCCC
Confidence 445566778988766 5666777777766 4599999997543 1 12345666665543223444 45778888
Q ss_pred HHHHHHHHHcCCc---E-EEeCCCC
Q 042954 129 ISMVLKCMLKGAA---D-FLIKPVR 149 (720)
Q Consensus 129 ~e~~~~Al~~GA~---d-YL~KP~~ 149 (720)
.+....+.+.|++ + |+.||..
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~ 238 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLP 238 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCC
Confidence 8888889999974 3 4566654
No 218
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=53.38 E-value=25 Score=37.51 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=39.2
Q ss_pred cCCccEEEEEe------cCH--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 042954 38 PRMVLRVLLVE------ADD--STRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE 94 (720)
Q Consensus 38 ~~m~~rVLIVD------Dd~--~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD 94 (720)
|+|+++|.|+- .+. ..-..+...|++.||+|.......+.++.++. ..+|+||.=
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~ 63 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNA 63 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEe
Confidence 46777888887 222 24466778888899999887666667777755 459999964
No 219
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.05 E-value=1e+02 Score=33.28 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=59.8
Q ss_pred EEEEEecCHHHHHHHHHHHH----hCCC--EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc--c
Q 042954 43 RVLLVEADDSTRQIISALLR----KCGY--RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH--D 113 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~----~~gy--eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~--~ 113 (720)
.|||=|.+-.....+...++ ...+ .|. .+.+.+||++.++. .+|+|.+|=. + .+.++++-+. .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~----~-~e~l~~~v~~~~~ 225 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNM----S-VEEIKEVVAYRNA 225 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCC----C-HHHHHHHHHHhhc
Confidence 46766666555555555553 2343 343 38999999999874 4899998852 2 2333333222 1
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..+++ .|..++.-+.+.+.+....|++-+.+
T Consensus 226 ~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 226 NYPHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred cCCCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 11443 56678888999999999999986654
No 220
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=52.95 E-value=1.1e+02 Score=35.20 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=66.6
Q ss_pred cEEEEEec---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEA---DDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDD---d~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
++++||-+ ++...+.++++.+..+. .|.... ..+..+++.. .||+|+--.. +.-|+.+++.+..
T Consensus 325 ~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~~-Eg~p~~vlEAma~----- 393 (475)
T cd03813 325 AEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSIS-EGQPLVILEAMAA----- 393 (475)
T ss_pred eEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCchh-hcCChHHHHHHHc-----
Confidence 56677643 34556666666666553 344433 3444455532 6888775443 3346777777753
Q ss_pred CCeEEEEeccCCHHHHHHHHHc------CCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 117 NIPVIMMSLHDSISMVLKCMLK------GAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~------GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||. |..... .+.+.. |..+++..|.+.++|...|..++.
T Consensus 394 G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 394 GIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 468875 544433 334434 778999999999999999998765
No 221
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=52.85 E-value=89 Score=33.81 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=62.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++++||-+.+. ...+.+.++..+. .|.......+..+++.. .|++|+=-. .+.-|.-+++.+.. .+|
T Consensus 230 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma~-----G~P 298 (374)
T TIGR03088 230 LRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMAS-----GLP 298 (374)
T ss_pred eEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHHc-----CCC
Confidence 46666665443 3445555555443 23333333344445532 566664222 23346677777743 468
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
||+ |.... ..+.+..|..+++..+-+.++|...|..++.
T Consensus 299 vv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 299 VIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred EEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 875 44333 3445667888999999999999999988764
No 222
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=52.71 E-value=65 Score=33.58 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCC-CH--HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSI-SG--FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~-dG--ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+.++.+.. .-=.|+++|+..-+. .| +++++.|.+. ..+||++-.+-.+.+.+.++++.||+..+.=
T Consensus 148 ~~~~~~~~~~--~~~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 148 PEELLRRLAK--WPEELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred HHHHHHHHHH--hCCeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 5566666654 312589999966432 22 6788888765 4789999999999999999999999988763
No 223
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=52.58 E-value=39 Score=33.91 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=45.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEE-E-eccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVL-T-EVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVL-l-Dv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+||||||..+..-..+.++|+..|+++........-.+.+. .+|.|| + ....|...+ .+.+.|+... ..+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~----~~d~iIi~gGp~~~~~~~-~~~~~i~~~~--~~~P 74 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE----NFSHILISPGPDVPRAYP-QLFAMLERYH--QHKS 74 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc----cCCEEEECCCCCChHHhh-HHHHHHHHhc--CCCC
Confidence 59999999998888899999999987666442111123332 267655 4 222222111 3445555432 4678
Q ss_pred EEEEe
Q 042954 120 VIMMS 124 (720)
Q Consensus 120 VIvLT 124 (720)
|+-+.
T Consensus 75 iLGIC 79 (190)
T PRK06895 75 ILGVC 79 (190)
T ss_pred EEEEc
Confidence 77665
No 224
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=52.44 E-value=1.3e+02 Score=31.69 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=75.7
Q ss_pred ccEEEEEecCH----HHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHHH
Q 042954 41 VLRVLLVEADD----STRQIISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTLV 109 (720)
Q Consensus 41 ~~rVLIVDDd~----~~r~~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~I 109 (720)
.+.+-|.|... .....+-+.|+..|+.+.. +.+|-..+.+|.. ..||+|=+|-.+- ......+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 45555555433 2344455667788887665 9999999999987 5599999998542 23344567766
Q ss_pred HhccCCCCCeEEEEeccCCHHHHHHHHHcCCc---E-EEeCCCCHHHHHHHHHH
Q 042954 110 MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA---D-FLIKPVRRNELRNLWQH 159 (720)
Q Consensus 110 r~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~---d-YL~KP~~~~eL~~~l~~ 159 (720)
-.....-.+.|| .-+-...+....+.+.|++ + |+.||...+++...+..
T Consensus 199 v~la~~l~~~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~~ 251 (256)
T COG2200 199 VALAHKLGLTVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred HHHHHHCCCEEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHhh
Confidence 554322344444 5556666777777788875 3 46789888777665543
No 225
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=52.17 E-value=45 Score=36.49 Aligned_cols=64 Identities=28% Similarity=0.419 Sum_probs=50.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY---RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLT 107 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy---eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~ 107 (720)
-.|+++|-|..+.+.=+.+|... || +|. ...||-..++.+.+ +.+|+||+|..-|.+.+-.+..
T Consensus 146 e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 146 ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCccchHHHHHH
Confidence 47999999999999888888753 66 333 35599999998876 4599999999988888765543
No 226
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=52.06 E-value=14 Score=42.29 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDEL 280 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~I 280 (720)
-.|+.=|-++++.+...+ .......-..++...+..||+|||||...++...
T Consensus 53 FeHSLGV~~la~~~~~~l-~~~~~~~~~~~~~~~~~~AALLHDIGHgPFSH~f 104 (421)
T COG1078 53 FEHSLGVYHLARRLLEHL-EKNSEEEIDEEERLLVRLAALLHDIGHGPFSHTF 104 (421)
T ss_pred cchhhHHHHHHHHHHHHH-hhccccccchHHHHHHHHHHHHHccCCCccccch
Confidence 456677777888877765 2211111122344579999999999999876553
No 227
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.98 E-value=1.4e+02 Score=31.67 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=59.0
Q ss_pred cEEEEEecCH-HHHHHHHHHHHhCCCEEEE--EC-CHHHHHHHHHcCCCCceEEEEeccCCCC------CHHHHHHHHHh
Q 042954 42 LRVLLVEADD-STRQIISALLRKCGYRVAA--VP-DGLAAWETLKCRPHSIDLVLTEVELPSI------SGFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~-~~r~~L~~lL~~~gyeV~~--A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~------dGieLL~~Ir~ 111 (720)
...+|+-|.+ .....+...+++.|..... +. +..+-++.+......|..++.=..-.+. +-.+.++++|+
T Consensus 116 vdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 116 VDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred CCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHh
Confidence 3444444444 4445566666777765332 22 2233333333333336655541111111 23577777776
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
. .++||++=-+-.+.+.+.++++.||+.+++-.
T Consensus 196 ~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 196 Y---SAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred h---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 5 35687765556668999999999999999875
No 228
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.92 E-value=47 Score=36.03 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=60.0
Q ss_pred EEEEEecCHHHH-------HHHHHHHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 43 RVLLVEADDSTR-------QIISALLRKCG-YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 43 rVLIVDDd~~~r-------~~L~~lL~~~g-yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
.|||-|.+-... ..++.+=+..+ ..| +.+.+.++|.+.++. .+|+|++|- |+..+=-++++.+++..
T Consensus 159 ~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~ 234 (284)
T PRK06096 159 TILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLA 234 (284)
T ss_pred hhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccC
Confidence 466666665443 33333333332 233 348899999999874 489999994 44333334455554322
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+. .+|-.++--..+.+.+-...|++-+.+
T Consensus 235 --~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 235 --PH-CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred --CC-eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 33 467788888899988888998775543
No 229
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=51.73 E-value=1.3e+02 Score=31.29 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHH
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~ 154 (720)
.+..+++.. .|++|+--...+.-|+.+++.+.. .+|||+ |.... ..+.+..|..+++.++.+.++|.
T Consensus 254 ~~~~~~~~~----ad~~i~ps~~~e~~~~~~~Ea~a~-----G~Pvi~-~~~~~---~~e~i~~~~~g~~~~~~d~~~l~ 320 (359)
T cd03823 254 EEIDDFYAE----IDVLVVPSIWPENFPLVIREALAA-----GVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLA 320 (359)
T ss_pred HHHHHHHHh----CCEEEEcCcccCCCChHHHHHHHC-----CCCEEE-CCCCC---HHHHhcCCCcEEEECCCCHHHHH
Confidence 444444432 577665433234456677777753 467775 33332 34456677789999999999999
Q ss_pred HHHHHHHh
Q 042954 155 NLWQHVWR 162 (720)
Q Consensus 155 ~~l~~vlr 162 (720)
..+..++.
T Consensus 321 ~~i~~l~~ 328 (359)
T cd03823 321 AALERLID 328 (359)
T ss_pred HHHHHHHh
Confidence 99998876
No 230
>PLN02823 spermine synthase
Probab=51.51 E-value=57 Score=36.19 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=44.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC---EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCC-------CHHHHHH-
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY---RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSI-------SGFALLT- 107 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy---eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-------dGieLL~- 107 (720)
.+|.+||=|+.+.+..++.|... ++ .+.. ..|+.+.++ .....|||||+|+--|.. -..++++
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~ 204 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYER 204 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccEEEecCCCccccCcchhhccHHHHHH
Confidence 58999999999999999888532 11 2322 556665553 333569999999754421 1346666
Q ss_pred HHHhc
Q 042954 108 LVMEH 112 (720)
Q Consensus 108 ~Ir~~ 112 (720)
.++..
T Consensus 205 ~~~~~ 209 (336)
T PLN02823 205 IVKPK 209 (336)
T ss_pred HHHHh
Confidence 55544
No 231
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=51.37 E-value=2.2e+02 Score=29.30 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=50.3
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEec------cCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEV------ELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv------~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+.+.+|++...+. .+|+|=+-+ .......++|+++|.+. .+|||.=-...+.+.+.+||+.||+..+
T Consensus 99 ist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 99 ISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp -SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred cCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 8899999988763 499997654 22234568999999874 5888888888899999999999999988
Q ss_pred eCC
Q 042954 145 IKP 147 (720)
Q Consensus 145 ~KP 147 (720)
+-.
T Consensus 172 VGs 174 (192)
T PF04131_consen 172 VGS 174 (192)
T ss_dssp E-H
T ss_pred ECc
Confidence 754
No 232
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=51.10 E-value=1e+02 Score=28.45 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=35.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc-CCCCceEEEEeccC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVEL 97 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~-~~~~pDLVLlDv~M 97 (720)
||++|.++-| +....++ +-.|.++..+.+.+++.+.++. ...++.||++.-.+
T Consensus 2 ~~~kIaVIGD-~dtv~GF----rLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~ 55 (104)
T PRK01395 2 TMYKIGVVGD-KDSILPF----KALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQI 55 (104)
T ss_pred cceeEEEEEC-HHHHHHH----HHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHH
Confidence 6779999999 5555444 3347777778777777665543 12458899886544
No 233
>PRK10742 putative methyltransferase; Provisional
Probab=50.88 E-value=78 Score=33.81 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=58.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC------CC----EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCC-HHHHHHH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC------GY----RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSIS-GFALLTL 108 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~------gy----eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-GieLL~~ 108 (720)
.-+|..||-++.+...|+.-|+.. +- .+.. ..+..+.+..+ ...||||.+|-+-|.-. .....+.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~~ksa~vkk~ 186 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHKQKSALVKKE 186 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCCccccchhhh
Confidence 457999999999999999999874 11 2222 45555555542 23599999999998643 2223333
Q ss_pred HHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 109 VMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+|-.. -++-...+..+.+..|+..--...++|
T Consensus 187 mr~~~------~l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 187 MRVFQ------SLVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred HHHHH------HhcCCCCChHHHHHHHHHhcCceEEEe
Confidence 33321 012233344555666666655666666
No 234
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=50.85 E-value=54 Score=33.72 Aligned_cols=77 Identities=18% Similarity=0.249 Sum_probs=53.1
Q ss_pred cccccccCCccEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCC--CCceEEEEeccCCCCCHHHHH
Q 042954 32 RWESFLPRMVLRVLLVEADDSTRQIISALLRKCGY--RVAA-VPDGLAAWETLKCRP--HSIDLVLTEVELPSISGFALL 106 (720)
Q Consensus 32 ~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~-A~sg~eAle~L~~~~--~~pDLVLlDv~MP~~dGieLL 106 (720)
.|.+.+|. .-+|.-||-++...+..+..++..|+ .|.. ..++.+.+..+.... ..||+|++|..= .+-.+.+
T Consensus 62 ~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~ 138 (205)
T PF01596_consen 62 WLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYF 138 (205)
T ss_dssp HHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHH
T ss_pred HHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHH
Confidence 34444443 35999999999999999999999886 3443 678888888775432 369999999842 2344555
Q ss_pred HHHHh
Q 042954 107 TLVME 111 (720)
Q Consensus 107 ~~Ir~ 111 (720)
+.+..
T Consensus 139 ~~~~~ 143 (205)
T PF01596_consen 139 EKALP 143 (205)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55543
No 235
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=50.44 E-value=2e+02 Score=31.73 Aligned_cols=108 Identities=13% Similarity=0.221 Sum_probs=61.9
Q ss_pred cEEEEEecCH--------HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 42 LRVLLVEADD--------STRQIISALLRKCGYRVAAV--PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~--------~~r~~L~~lL~~~gyeV~~A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
++++||-+.. ...+.+.++....+-.|... -+.++..+++.. .|++|+--...+.-|+-+++.+.
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma- 299 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA- 299 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH-
Confidence 4666665422 23334444444444333332 234555666643 57777644333333556666664
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADF-LIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY-L~KP~~~~eL~~~l~~vlr 162 (720)
-.+|||. |.... ..+.+..|..+| +..|.+.++|...|..++.
T Consensus 300 ----~G~PVI~-s~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 ----AGKPVLA-STKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred ----cCCCEEE-eCCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 2578875 44333 234566788898 5678999999999988765
No 236
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=50.44 E-value=1.1e+02 Score=32.54 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCEEEEECCHH-----HHH---H-HHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHH
Q 042954 65 GYRVAAVPDGL-----AAW---E-TLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKC 135 (720)
Q Consensus 65 gyeV~~A~sg~-----eAl---e-~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~A 135 (720)
+.+|..+.+|. ++- . .+++ +.||++|+=-=-|..-|-.-.+++-+. .++|.|++|.-...... ++
T Consensus 31 dI~vrv~gsGaKm~pe~~~~~~~~~~~~--~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~~-d~ 104 (277)
T PRK00994 31 DIDVRVVGSGAKMGPEEVEEVVKKMLEE--WKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKVK-DA 104 (277)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHh--hCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccchH-HH
Confidence 57777766542 222 2 3333 779998875444444555445666544 47899999988776544 88
Q ss_pred HHcCCcEEEeCCCC
Q 042954 136 MLKGAADFLIKPVR 149 (720)
Q Consensus 136 l~~GA~dYL~KP~~ 149 (720)
++..-.+||.=+.+
T Consensus 105 l~~~g~GYIivk~D 118 (277)
T PRK00994 105 MEEQGLGYIIVKAD 118 (277)
T ss_pred HHhcCCcEEEEecC
Confidence 88778888876655
No 237
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=50.37 E-value=98 Score=29.66 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=41.0
Q ss_pred CceEEEEeccCCCCCH-------HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 87 SIDLVLTEVELPSISG-------FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 87 ~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..|.|.++-..+...+ ...+..++.. ..+||++..+-...+.+.+++..||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4799998887764432 2444445443 578999988888889999999999988764
No 238
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=50.35 E-value=20 Score=35.93 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=34.9
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE 94 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD 94 (720)
|||||.....-.-|..+|+..|++|..+.+..-.++.+.. ..||.||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iils 50 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVIS 50 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEc
Confidence 8999999999999999999999888776644222233333 236766653
No 239
>PRK14098 glycogen synthase; Provisional
Probab=50.31 E-value=1.6e+02 Score=34.25 Aligned_cols=112 Identities=6% Similarity=0.033 Sum_probs=62.4
Q ss_pred cEEEEEecCH-HHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 42 LRVLLVEADD-STRQIISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 42 ~rVLIVDDd~-~~r~~L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.+++|+-+-+ .....|+++.+..+ ..+...-+..++.+++.. .|++|+=-. .+.-|+..++.++. .+
T Consensus 337 ~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E~~Gl~~lEAma~-----G~ 406 (489)
T PRK14098 337 IQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IESCGMLQMFAMSY-----GT 406 (489)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CCCchHHHHHHHhC-----CC
Confidence 5666666533 34455555555443 222333344445555532 677764322 23457766666653 34
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|+|+...-.-.+.+.+....+..+|+..|.+.+.|..+|..++..
T Consensus 407 ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 407 IPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALAL 451 (489)
T ss_pred CeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHH
Confidence 555433222223332333346789999999999999999987654
No 240
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=50.05 E-value=1.5e+02 Score=31.53 Aligned_cols=100 Identities=18% Similarity=0.070 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCEEEEECCH--HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHH
Q 042954 56 IISALLRKCGYRVAAVPDG--LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVL 133 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~A~sg--~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~ 133 (720)
.++..|+.....|....+. .-..+++.. ..||-+++|..--..|.-.++.+|+.....+..|||=. ...+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~-p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRP-PVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeC-CCCCHHHHH
Confidence 4666776554454443222 224466655 45999999999888899999999998876666676644 456678899
Q ss_pred HHHHcCCcEEEeCCCCHH-HHHHHHH
Q 042954 134 KCMLKGAADFLIKPVRRN-ELRNLWQ 158 (720)
Q Consensus 134 ~Al~~GA~dYL~KP~~~~-eL~~~l~ 158 (720)
+++..||...|.-=++.. +-+..+.
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 999999999998665544 4444433
No 241
>PRK01362 putative translaldolase; Provisional
Probab=50.03 E-value=77 Score=32.97 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEE---EeccCCCCCHHHHHHHHHhccCCCC-CeEEEEeccCCHHHH
Q 042954 59 ALLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVL---TEVELPSISGFALLTLVMEHDVCKN-IPVIMMSLHDSISMV 132 (720)
Q Consensus 59 ~lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVL---lDv~MP~~dGieLL~~Ir~~~~~p~-ipVIvLTs~~d~e~~ 132 (720)
+.|...|+. ++.+.+..+|+...+.. .+.|= --+.-.+.||+++++.+.+...... -.-|+..+..+...+
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v 171 (214)
T PRK01362 95 KALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHV 171 (214)
T ss_pred HHHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHH
Confidence 346666764 45588999998877653 33322 1222247799999998876642221 346667778889999
Q ss_pred HHHHHcCCcEEEeCC
Q 042954 133 LKCMLKGAADFLIKP 147 (720)
Q Consensus 133 ~~Al~~GA~dYL~KP 147 (720)
.++...|++ +++=|
T Consensus 172 ~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 172 LEAALAGAD-IATIP 185 (214)
T ss_pred HHHHHcCCC-EEecC
Confidence 999999999 55444
No 242
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=50.00 E-value=78 Score=37.98 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=61.5
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
......+.+||.|+...+.++ +.|+.+...+ +-.+.++.. +-.+.++||+-+.-+. .-..++..+|+.. |
T Consensus 420 ~~~g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~a--gi~~A~~vvv~~~d~~-~n~~i~~~ar~~~--p 490 (621)
T PRK03562 420 LSSGVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA--GAAKAEVLINAIDDPQ-TSLQLVELVKEHF--P 490 (621)
T ss_pred HhCCCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhc--CCCcCCEEEEEeCCHH-HHHHHHHHHHHhC--C
Confidence 334568889998888665543 3578776532 223344433 2245888887764333 2366777888876 8
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+++||+.+. +.+...+..+.||+..+
T Consensus 491 ~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 491 HLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred CCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 888887774 44666777788988654
No 243
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=49.99 E-value=40 Score=35.14 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=72.2
Q ss_pred CccEEEEEecCH-HHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 40 MVLRVLLVEADD-STRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~-~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
-..+|=+|-... ...+.|.+-|.++||+|.. +++...|.++++++..+|-++|-|-.|++.+|++ .. .
T Consensus 38 ~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gid------Ts--~ 109 (262)
T KOG3040|consen 38 QHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGID------TS--D 109 (262)
T ss_pred cCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCcc------CC--C
Confidence 346777777654 4566677788889998764 7788899999998888899999999999999963 23 3
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|++.||-+.. +-|+.+.|-++.+-++...
T Consensus 110 pn~VViglap--------------------e~F~y~~ln~AFrvL~e~~ 138 (262)
T KOG3040|consen 110 PNCVVIGLAP--------------------EGFSYQRLNRAFRVLLEMK 138 (262)
T ss_pred CCeEEEecCc--------------------ccccHHHHHHHHHHHHcCC
Confidence 7777775543 3466777777777766654
No 244
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.93 E-value=1.9e+02 Score=33.10 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=64.0
Q ss_pred ccEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC---------C--CCH
Q 042954 41 VLRVLLVEA----DDSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP---------S--ISG 102 (720)
Q Consensus 41 ~~rVLIVDD----d~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP---------~--~dG 102 (720)
...|++||- ...+.+.++.+=+.+ +..|.. +.+.++|..+++. .+|.|.+-+.-- + ..-
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCCh
Confidence 467888874 233334444443333 234433 8899999988864 489988543110 0 112
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..+..+.+......+|||.=-+......+.+|+.+||+..+.-
T Consensus 242 ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 242 ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 33443333322113689999999999999999999999988764
No 245
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=49.78 E-value=54 Score=35.27 Aligned_cols=56 Identities=13% Similarity=0.296 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
-+++++.+|+.. ..+|+|+||=+.- .....+|-+.|+++.|+-.+..++-......
T Consensus 81 ~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~ 142 (265)
T COG0159 81 TLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKA 142 (265)
T ss_pred HHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHH
Confidence 467888888765 7899999996542 3346688999999999988877665543333
No 246
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=49.70 E-value=1.8e+02 Score=31.63 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=63.0
Q ss_pred EEEEEe--cCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 43 RVLLVE--ADDST---RQIISALLRKCGYRVAAVPDGLAAWET-------LKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 43 rVLIVD--Dd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~-------L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
+|+||- +.+.. ...+...|+..|+++.........+.. .+.....+|+||+ -|.|| .+|+.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDG-t~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDG-TMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcH-HHHHHHH
Confidence 577773 33333 455566667778887765432221110 0111123788776 26777 4666666
Q ss_pred hccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 111 EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
... ..++||+-+. .|=.+||. .+..+++...|..++++.-
T Consensus 82 ~~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred Hhc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 543 2578887554 46668998 7889999999999987653
No 247
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.46 E-value=85 Score=34.12 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=62.8
Q ss_pred ccEEEEEe--cCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHcCCCCceEEEEeccCCCCCHHHHHHH
Q 042954 41 VLRVLLVE--ADDST---RQIISALLRKCGYRVAAVPDGLAAWET-------LKCRPHSIDLVLTEVELPSISGFALLTL 108 (720)
Q Consensus 41 ~~rVLIVD--Dd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~-------L~~~~~~pDLVLlDv~MP~~dGieLL~~ 108 (720)
+.+|+||- +.+.. ...+..+|++.|+++.........+.. +......+|+||+ -|.|| .+|+.
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDG-T~L~a 79 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDG-NMLGA 79 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcH-HHHHH
Confidence 45688873 33333 445666677778888775443222210 0111123677665 27787 56666
Q ss_pred HHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 109 VMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++.... ..+||+-+- .|=.+||. .+..+++...|++++++..
T Consensus 80 a~~~~~-~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 80 ARVLAR-YDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHhcC-CCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 665432 367877543 35567886 5788999999999987654
No 248
>PLN02335 anthranilate synthase
Probab=49.36 E-value=39 Score=35.06 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=47.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEec--cCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEV--ELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv--~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
..+|||||-...+-..|.+.|+..|+++..+....-.++.+.. ..||.||+-- .-|...| ..++.+++.. ..+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~~~--~~~ 92 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLELG--PLV 92 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHHhC--CCC
Confidence 3599999988888888999999999877775432111232322 3477666532 2232222 2355555443 467
Q ss_pred eEEEEe
Q 042954 119 PVIMMS 124 (720)
Q Consensus 119 pVIvLT 124 (720)
||+-+.
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 887665
No 249
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=49.23 E-value=79 Score=31.64 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCCCC-------HHHHHHHHHhccC--CCCCeEEEE
Q 042954 56 IISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPSIS-------GFALLTLVMEHDV--CKNIPVIMM 123 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-------GieLL~~Ir~~~~--~p~ipVIvL 123 (720)
...+.++..|..+.. ..+..+.++.+.. .+|.|+++-.-|+.. +++.++++++... .+.+||++.
T Consensus 95 ~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~ 171 (210)
T TIGR01163 95 RLLQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD 171 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 333555555644332 3345666655532 267777765545443 3455555654321 123566555
Q ss_pred eccCCHHHHHHHHHcCCcEEEeC
Q 042954 124 SLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~K 146 (720)
-+- ..+.+.++++.||+.+++-
T Consensus 172 GGI-~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 172 GGV-NDDNARELAEAGADILVAG 193 (210)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEC
Confidence 544 5788889999999988765
No 250
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=49.21 E-value=1.7e+02 Score=31.27 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=46.2
Q ss_pred EEEEEecCH----HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 43 RVLLVEADD----STRQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 43 rVLIVDDd~----~~r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
+|.||.++. .+...+...|+..|++|+. ..+-...+..|+. ..+|+||+... +.+...+++.+++
T Consensus 143 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~~--~~~~~~~~~~~~~ 218 (345)
T cd06338 143 KVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAGH--FPDAVLLVRQMKE 218 (345)
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECCc--chhHHHHHHHHHH
Confidence 444444443 3455667777778887753 1244445555654 34899987543 3467788888887
Q ss_pred ccCCCCCeEEEEec
Q 042954 112 HDVCKNIPVIMMSL 125 (720)
Q Consensus 112 ~~~~p~ipVIvLTs 125 (720)
.. -..++++.+.
T Consensus 219 ~g--~~~~~~~~~~ 230 (345)
T cd06338 219 LG--YNPKALYMTV 230 (345)
T ss_pred cC--CCCCEEEEec
Confidence 65 3455655543
No 251
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=49.14 E-value=1.5e+02 Score=31.14 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCCceE-EEEeccC----CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcC-CcEEEe---
Q 042954 75 LAAWETLKCRPHSIDL-VLTEVEL----PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKG-AADFLI--- 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDL-VLlDv~M----P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~G-A~dYL~--- 145 (720)
.+..+.+.+ ..+|. +++|+.- ++ -.+++++++++. ..+|||.--+-.+.+.+.+++..| |+..+.
T Consensus 158 ~~~~~~l~~--~G~~~iivt~i~~~g~~~g-~~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 158 VEWAKEVEK--LGAGEILLTSMDKDGTKSG-YDLELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred HHHHHHHHH--cCCCEEEEeCcCcccCCCC-CCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 344455544 33674 4445421 22 226889999876 368999999999999999999988 888443
Q ss_pred ---CCCCHHHHHHHHH
Q 042954 146 ---KPVRRNELRNLWQ 158 (720)
Q Consensus 146 ---KP~~~~eL~~~l~ 158 (720)
+-++..+++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 232 FHYREITIGEVKEYLA 247 (254)
T ss_pred HhCCCCCHHHHHHHHH
Confidence 3456666655544
No 252
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=49.13 E-value=68 Score=32.07 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=61.0
Q ss_pred EEEEEecCHHHHHHHHHHHH----hCC--CEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALLR----KCG--YRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~----~~g--yeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
.|||-|.+-...-.+...++ ... ..|. .+.+.+|+.+.++. .+|+|.+|-.-| .+=-++++.++...
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~-- 125 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELN-- 125 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHT--
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcC--
Confidence 46666666654444444443 222 2344 48999999999874 389999997655 23335556665654
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+. ..|..++--+.+.+.+....|++.|-+
T Consensus 126 ~~-v~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 126 PR-VKIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp TT-SEEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred Cc-EEEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 44 677788888888888888999766543
No 253
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.13 E-value=1e+02 Score=32.89 Aligned_cols=106 Identities=23% Similarity=0.242 Sum_probs=64.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+++|+-+.+. ...++.+....+. .|.......+..+++.. .|++|+=.. .+.-|+-+++.+.. .+|
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E~~~~~~~EAma~-----g~P 296 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KESFGLAALEAMAC-----GVP 296 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cCCCccHHHHHHHc-----CCC
Confidence 46666655433 2344555555443 34444444444455532 577776543 23346777777743 468
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
||. |.... ..+.+..|..+|+.+|-+.++|...+..++.
T Consensus 297 vI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 297 VVA-SNAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred EEE-eCCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 876 33332 3456777889999999999999988887654
No 254
>PRK13566 anthranilate synthase; Provisional
Probab=49.12 E-value=36 Score=41.63 Aligned_cols=79 Identities=29% Similarity=0.366 Sum_probs=51.2
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe--ccCCC-CCHHHHHHHHHhccCC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE--VELPS-ISGFALLTLVMEHDVC 115 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD--v~MP~-~dGieLL~~Ir~~~~~ 115 (720)
...++|||||........|.++|+..|++|..+..... .+.+.. ..||.||+= ...|. ..-.++++++.+
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~~---- 596 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAALA---- 596 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHHH----
Confidence 34579999999998999999999999998887654432 223332 348987762 12221 123455555543
Q ss_pred CCCeEEEEe
Q 042954 116 KNIPVIMMS 124 (720)
Q Consensus 116 p~ipVIvLT 124 (720)
.++||+-+.
T Consensus 597 ~~iPILGIC 605 (720)
T PRK13566 597 RNLPIFGVC 605 (720)
T ss_pred CCCcEEEEe
Confidence 358888665
No 255
>PLN02775 Probable dihydrodipicolinate reductase
Probab=48.89 E-value=3.9e+02 Score=29.16 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=58.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEE------------------------CCHHHHHHHHHcCCCCceEEEEec
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAV------------------------PDGLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A------------------------~sg~eAle~L~~~~~~pDLVLlDv 95 (720)
+.++|+|.----.+-+.+.+.+...+++++.+ .+.++++..++. ..+|+|++|.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~--~~~~~VvIDF 87 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA--EYPNLIVVDY 87 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc--cCCCEEEEEC
Confidence 34677777777776666555554466665542 444555544433 2489999999
Q ss_pred cCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc-CCcEEEeCCCCH
Q 042954 96 ELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK-GAADFLIKPVRR 150 (720)
Q Consensus 96 ~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~-GA~dYL~KP~~~ 150 (720)
..|.. -.+.++...+. .+|+|+=|.--+.+...+..+. ++--++.-.+..
T Consensus 88 T~P~a-~~~~~~~~~~~----g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 88 TLPDA-VNDNAELYCKN----GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred CChHH-HHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 98863 24566666554 3566665544444443333333 444344433554
No 256
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=48.64 E-value=87 Score=32.07 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCCce-EEEEeccCCC-CCH--HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcC-CcEEEe
Q 042954 74 GLAAWETLKCRPHSID-LVLTEVELPS-ISG--FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKG-AADFLI 145 (720)
Q Consensus 74 g~eAle~L~~~~~~pD-LVLlDv~MP~-~dG--ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~G-A~dYL~ 145 (720)
..+..+.+.. ..++ |+++|+..-+ ..| +++++++++.. .+|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 148 ~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 3555666654 2366 8888875432 234 78899998753 58999999999999999999988 998875
No 257
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=48.48 E-value=78 Score=36.10 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.+.++++ ..+|+|++|.--+. ..-++++++||+.. |+++|| +-.-...+.+..++++||+...
T Consensus 157 ~v~~lv~---aGvDvI~iD~a~g~~~~~~~~v~~ik~~~--p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 157 RVEELVK---AHVDILVIDSAHGHSTRIIELVKKIKTKY--PNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHh---cCCCEEEEECCCCCChhHHHHHHHHHhhC--CCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 4444444 34899999998873 45668999998865 777644 5556677888999999988765
No 258
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.44 E-value=1.4e+02 Score=31.18 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=47.4
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc--CCCCCeEEEEeccCCHHHHHHH
Q 042954 59 ALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD--VCKNIPVIMMSLHDSISMVLKC 135 (720)
Q Consensus 59 ~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~--~~p~ipVIvLTs~~d~e~~~~A 135 (720)
..|.+.+ .-|+...+.++|++.++.- ..--|=++++.|-.-+.++.++.|++.. ..|++ +|=.-.--+.+.+..+
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al-~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKAC-YDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALY 87 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHH
Confidence 3344444 3445566666666554321 0112334455554455677777775332 11332 2222334467778888
Q ss_pred HHcCCcEEEeCCCCHHHHH
Q 042954 136 MLKGAADFLIKPVRRNELR 154 (720)
Q Consensus 136 l~~GA~dYL~KP~~~~eL~ 154 (720)
+++||. |++-|.-..+|.
T Consensus 88 ~~aGA~-FiVsP~~~~~v~ 105 (222)
T PRK07114 88 IQLGAN-FIVTPLFNPDIA 105 (222)
T ss_pred HHcCCC-EEECCCCCHHHH
Confidence 888887 666664444443
No 259
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=48.44 E-value=2.1 Score=44.06 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=69.3
Q ss_pred EEEecCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 45 LLVEADDSTRQIISALLRKCGY----RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 45 LIVDDd~~~r~~L~~lL~~~gy----eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+.+|++...+..+..++...-+ .........+...... ...+|+++.++.||++.|+.++..+.......++++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAAT--SFSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhccc--cccccccccccccccccccccccccccCCCCCCCCc
Confidence 5566665555555555554321 1222222221111111 135899999999999999999999987554566777
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHH
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL 153 (720)
+++............+..|+.+|+.+|....++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 129 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRL 129 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCc
Confidence 777777666667788888899999999874333
No 260
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.35 E-value=66 Score=34.06 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHH
Q 042954 52 STRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISM 131 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~ 131 (720)
.....|....++.|..+....-..++++.|.+ +++-+.=+.-.+.+-+.||+.+.+. ..|||+=|+-...+.
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~t----gkPvIlSTG~stl~E 127 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAKT----GKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE-TT--HHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHHh----CCcEEEECCCCCHHH
Confidence 44555677778889888887777888888865 4555555555677889999999874 579999999998877
Q ss_pred HHHHH----HcCCcEE
Q 042954 132 VLKCM----LKGAADF 143 (720)
Q Consensus 132 ~~~Al----~~GA~dY 143 (720)
+.+|+ +.|..++
T Consensus 128 I~~Av~~~~~~~~~~l 143 (241)
T PF03102_consen 128 IERAVEVLREAGNEDL 143 (241)
T ss_dssp HHHHHHHHHHHCT--E
T ss_pred HHHHHHHHHhcCCCCE
Confidence 66654 4454444
No 261
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=47.88 E-value=1.7e+02 Score=34.33 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred ccEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEec--------------cCCC
Q 042954 41 VLRVLLVEA----DDSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEV--------------ELPS 99 (720)
Q Consensus 41 ~~rVLIVDD----d~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv--------------~MP~ 99 (720)
...++.||- .....+.++.+-+.. +..|.. +.+.++|..+++. ..|.|.+.+ ..|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCCh
Confidence 356777774 333344444444443 344444 6677777776653 367775432 2343
Q ss_pred CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 100 ~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.. .+..+.+......+|||.=-+......+.+|+.+||+..+.--
T Consensus 330 ~~---ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 330 AS---AVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred HH---HHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 33 3333322221135888887788889999999999999887654
No 262
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=47.77 E-value=2.7e+02 Score=29.35 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=56.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEecc---------C--------------C
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE---------L--------------P 98 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~---------M--------------P 98 (720)
.+|..||-++...+..+.-+...+.++.. .|..+.+..... ..||+||+|.= + .
T Consensus 111 ~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~g 187 (251)
T TIGR03704 111 IELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDG 187 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcC
Confidence 48999999999999888888777665533 343333321111 35999999851 1 1
Q ss_pred CCCHHHHHHHHHhc---cCCCCCeEEEEeccCCHHHHHHHH
Q 042954 99 SISGFALLTLVMEH---DVCKNIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 99 ~~dGieLL~~Ir~~---~~~p~ipVIvLTs~~d~e~~~~Al 136 (720)
+.+|+++++.|-.. ...+.-.+++.++......+...+
T Consensus 188 g~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 188 GADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 34677666665422 122445566667666666666655
No 263
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.69 E-value=1.8e+02 Score=31.22 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEE------EeCCCCHHHHHHHHHHHHhhc
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADF------LIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY------L~KP~~~~eL~~~l~~vlr~~ 164 (720)
++++.+|++.- ++|||...+-.+.+.+.+++..||+.. +..|.-..+++.-+...+...
T Consensus 223 l~~v~~i~~~~---~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 223 LRMVYQVYQAV---DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred HHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 67888888753 699999999999999999999997543 334544555555555544433
No 264
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=47.29 E-value=1.8e+02 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=18.0
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEECCHHHH
Q 042954 48 EADDSTRQIISALLRKCGYRVAAVPDGLAA 77 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~gyeV~~A~sg~eA 77 (720)
|.+......+...|...||++.......+.
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~ 38 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATEGTAKY 38 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEchHHHHH
Confidence 344444555666677779998765443333
No 265
>PRK10854 exopolyphosphatase; Provisional
Probab=47.13 E-value=15 Score=42.89 Aligned_cols=45 Identities=7% Similarity=-0.060 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcC-----CCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 225 EAESAYMQNMQGLSQLKCRSASN-----TCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~g-----l~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
.++-.|.++|..++..|-..+.. +++. +...|+.||+|||||+-.
T Consensus 327 ~~d~~ha~~V~~~a~~LFd~l~~~h~~~~~~~------~~~LL~~Aa~LhdiG~~I 376 (513)
T PRK10854 327 NIDREQARRVLETTMQLYEQWREQNPKLAHPQ------LEALLKWAAMLHEVGLNI 376 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhcccCCHH------HHHHHHHHHHHHhcCCcc
Confidence 45678999999999987655421 1233 667999999999999974
No 266
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=46.55 E-value=1.3e+02 Score=34.00 Aligned_cols=93 Identities=10% Similarity=0.079 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC----CCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 52 STRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS----ISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~----~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
.--+.+...|...||+++.. ...+|||++...-.- ...+++++++++.. |+++|||--.+.
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~--p~~~vvvgGc~a 75 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQN--PTAKIIVTGCYA 75 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhC--CCcEEEEECCcc
Confidence 34466778888889986542 123799999864433 24688899998765 676665544444
Q ss_pred CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 128 SISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
. ..-.+++.....|++.-+-....+...+...
T Consensus 76 ~-~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 76 Q-SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred c-cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3 2233445566678999888877777777654
No 267
>PRK05670 anthranilate synthase component II; Provisional
Probab=46.45 E-value=51 Score=32.98 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=44.3
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe-ccC-CCCCHHHHHHHHHhccCCCCCeEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE-VEL-PSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD-v~M-P~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
|||||-....-..+.++|++.|+++............+.. ..||.||+- =-+ |...+ .+.+.|+... ..+||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIlsgGpg~~~d~~-~~~~~l~~~~--~~~PvL 76 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVLSPGPGTPAEAG-ISLELIREFA--GKVPIL 76 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEEcCCCCChHHcc-hHHHHHHHhc--CCCCEE
Confidence 8999999999999999999999877765432211222222 237877662 101 11111 2334444332 457887
Q ss_pred EEe
Q 042954 122 MMS 124 (720)
Q Consensus 122 vLT 124 (720)
-+.
T Consensus 77 GIC 79 (189)
T PRK05670 77 GVC 79 (189)
T ss_pred EEC
Confidence 665
No 268
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=46.45 E-value=2.8e+02 Score=31.55 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=60.5
Q ss_pred HHHHHHhCCCEEEE----ECCHHHHHHHHHcCCCCceEEEEeccC----CCCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 57 ISALLRKCGYRVAA----VPDGLAAWETLKCRPHSIDLVLTEVEL----PSISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 57 L~~lL~~~gyeV~~----A~sg~eAle~L~~~~~~pDLVLlDv~M----P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
+....++.|..+.. +.+..+.+..+.+ ...|.|.+.... ....+++.++++++.. ++||++.-+- .
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~---~iPI~a~GGI-~ 172 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEEV---SIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhhC---CCcEEEECCC-C
Confidence 34444556655443 2333333333333 237888765421 1246788899998753 4888877766 5
Q ss_pred HHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHhh
Q 042954 129 ISMVLKCMLKGAADFLI-----KPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~-----KP~~~~eL~~~l~~vlr~ 163 (720)
.+.+.+++..||+.+.. +.-++.+....++..++.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 78888999999986644 444555555555555543
No 269
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=45.80 E-value=18 Score=40.21 Aligned_cols=39 Identities=8% Similarity=-0.062 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
-.|+.-|+.+++.+++.+ +++. +.++.||++||||.--+
T Consensus 64 ~~Hsl~V~~iar~~~~~l-~~~~---------~l~~aaaL~HDiGh~Pf 102 (336)
T PRK01286 64 LTHTLEVAQIARTIARAL-RLNE---------DLTEAIALGHDLGHTPF 102 (336)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCH---------HHHHHHHHHhcCCCCCC
Confidence 458888999999999988 6643 35677999999999644
No 270
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.60 E-value=81 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC-CCCCeEEEEeccCCHHH
Q 042954 53 TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV-CKNIPVIMMSLHDSISM 131 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~-~p~ipVIvLTs~~d~e~ 131 (720)
+...+...|+..|+++. . ..+|+||+ -|.|| .+|+.++.... ...+||+-+-
T Consensus 16 ~~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGIN------- 68 (265)
T PRK04885 16 VASKLKKYLKDFGFILD-------------E--KNPDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGVH------- 68 (265)
T ss_pred HHHHHHHHHHHcCCccC-------------C--cCCCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEEe-------
Confidence 34445556666676631 1 23788876 27787 56777766542 1478887543
Q ss_pred HHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 132 VLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 132 ~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
.|-.+||. .++.+++...+..++++..
T Consensus 69 ------~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 69 ------TGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred ------CCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 57789998 5888999999999988653
No 271
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=45.52 E-value=65 Score=33.07 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=50.3
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHH
Q 042954 59 ALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCML 137 (720)
Q Consensus 59 ~lL~~~gy-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~ 137 (720)
+.|+..+. -|+...+.++|+++++.- ..-.|=++++.|-.-+.+++++.+++.. |++ +|=.-.--+.+.+.+|++
T Consensus 3 ~~l~~~~iiaVir~~~~~~a~~~~~al-~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~-~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 3 ERLKENKIIAVIRGDDPEDAVPIAEAL-IEGGIRAIEITLRTPNALEAIEALRKEF--PDL-LVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp HHHHHHSEEEEETTSSGGGHHHHHHHH-HHTT--EEEEETTSTTHHHHHHHHHHHH--TTS-EEEEES--SHHHHHHHHH
T ss_pred HHHhhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEecCCccHHHHHHHHHHHC--CCC-eeEEEeccCHHHHHHHHH
Confidence 44555442 333455555555544321 0112334566666667889999998876 664 333444557889999999
Q ss_pred cCCcEEEeCCCCHHHHH
Q 042954 138 KGAADFLIKPVRRNELR 154 (720)
Q Consensus 138 ~GA~dYL~KP~~~~eL~ 154 (720)
+||. |++-|.-..++.
T Consensus 79 aGA~-FivSP~~~~~v~ 94 (196)
T PF01081_consen 79 AGAQ-FIVSPGFDPEVI 94 (196)
T ss_dssp HT-S-EEEESS--HHHH
T ss_pred cCCC-EEECCCCCHHHH
Confidence 9998 666664444443
No 272
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.07 E-value=1.6e+02 Score=36.50 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=59.6
Q ss_pred cEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEec--cCCCC-CHHHHHHHHHhccCC
Q 042954 42 LRVLLVEADDS---TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEV--ELPSI-SGFALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~~---~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv--~MP~~-dGieLL~~Ir~~~~~ 115 (720)
.+|.||+-|.. ..+.++.+-+..|..+..+.+..+..+.++.. ..+|+||+|. +++.. .-.+.+..|... ..
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~~-~~ 293 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCGV-GR 293 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhcc-CC
Confidence 48888887754 23445555556677777777888876666643 3589999998 23322 223444444332 22
Q ss_pred CCCeEEEEeccCCHH---HHHHHHHc----CCcEEEe
Q 042954 116 KNIPVIMMSLHDSIS---MVLKCMLK----GAADFLI 145 (720)
Q Consensus 116 p~ipVIvLTs~~d~e---~~~~Al~~----GA~dYL~ 145 (720)
+.-.++||.+....+ .+.+.++. +.+++|.
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 455677776655443 34455543 5666654
No 273
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=44.99 E-value=26 Score=35.21 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=35.1
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE 94 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD 94 (720)
|||||.....-.-|.++|+..|+++....+.+..++.+.. ..||.||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEc
Confidence 8999999999999999999989887775554322333332 247776664
No 274
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.98 E-value=2.3e+02 Score=29.67 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCCCce-EEEEecc----CCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc-CCcEEEe---
Q 042954 75 LAAWETLKCRPHSID-LVLTEVE----LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK-GAADFLI--- 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pD-LVLlDv~----MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~-GA~dYL~--- 145 (720)
.+..+.+.. ..++ |+++|+. +.+. -+++++++++. ..+|||.--+-.+.+.+.++++. ||++.+.
T Consensus 156 ~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 156 VEWAKEVEE--LGAGEILLTSMDRDGTKNGY-DLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHHH--cCCCEEEEcCCcCCCCCCCc-CHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 444455544 2365 6676643 2233 37888998876 36899999999999999999975 9988776
Q ss_pred ---CCCCHHHHHHHHH
Q 042954 146 ---KPVRRNELRNLWQ 158 (720)
Q Consensus 146 ---KP~~~~eL~~~l~ 158 (720)
.-++..+++..+.
T Consensus 230 l~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 230 FHFGEITIGELKAYLA 245 (253)
T ss_pred HHcCCCCHHHHHHHHH
Confidence 3455666655543
No 275
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.80 E-value=1.1e+02 Score=32.02 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCC-CH--HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSI-SG--FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~-dG--ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+.++.+.... --.+|++|+..-++ .| +++++.+.+. ..+|||+-.+-.+.+.+.++++.|++..++-
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 44445544321 13699999976543 23 6888888765 4689999999999999999999999998864
No 276
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.74 E-value=2.2e+02 Score=32.51 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=55.9
Q ss_pred ccEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCC--CCceEEEEecc--CCCCCHHHHHHHHHhcc
Q 042954 41 VLRVLLVEADDST---RQIISALLRKCGYRVAAVPDGLAAWETLKCRP--HSIDLVLTEVE--LPSISGFALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~--~~pDLVLlDv~--MP~~dGieLL~~Ir~~~ 113 (720)
..+|.+|+-|+.- ...++.+-+..++.+..+.+..+..+.+.... ..+|+||+|.- ++. .-+++..|+...
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~--d~~~l~EL~~l~ 311 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL--AEESVSEISAYT 311 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc--CHHHHHHHHHHh
Confidence 4689999988752 33455555556766666777766555443211 24899999983 332 123344433321
Q ss_pred --CCCCCeEEEEeccCCHHHHHHHH----HcCCcEEEe
Q 042954 114 --VCKNIPVIMMSLHDSISMVLKCM----LKGAADFLI 145 (720)
Q Consensus 114 --~~p~ipVIvLTs~~d~e~~~~Al----~~GA~dYL~ 145 (720)
..++..++++++......+.+++ ..+.+.+|.
T Consensus 312 ~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 312 DVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred hccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 12444455666544444444443 344555543
No 277
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=44.73 E-value=1.6e+02 Score=31.35 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=43.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC-------CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCC-----HHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG-------YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS-----GFALLTLV 109 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g-------yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-----GieLL~~I 109 (720)
.+|.+||-++.+.+..++.|...+ .++. ..++.+.++.. ...|||||+|.--|... ..++++.+
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~-~~D~~~~l~~~---~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~ 172 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ-IDDGFKFLADT---ENTFDVIIVDSTDPVGPAETLFTKEFYELL 172 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE-ECchHHHHHhC---CCCccEEEEeCCCCCCcccchhHHHHHHHH
Confidence 479999999999988888875431 2333 35555554432 34699999998654321 24666666
Q ss_pred Hhcc
Q 042954 110 MEHD 113 (720)
Q Consensus 110 r~~~ 113 (720)
++.-
T Consensus 173 ~~~L 176 (270)
T TIGR00417 173 KKAL 176 (270)
T ss_pred HHHh
Confidence 6553
No 278
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=44.71 E-value=2e+02 Score=29.46 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeccCCC---------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH---HHHcC
Q 042954 72 PDGLAAWETLKCRPHSIDLVLTEVELPS---------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK---CMLKG 139 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pDLVLlDv~MP~---------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~---Al~~G 139 (720)
.+-.+.++.+.. ..+|.|++|+.-.. .+-.+++..++.... ....+++-....+.....+ ++..|
T Consensus 8 ~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~-~~~~~~VRvn~~~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 8 ANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARA-AGSEIIVRVNSLDSPHIERDLEALDAG 84 (221)
T ss_dssp STSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTT-SSSEEEEE-SSTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhccccc-ccccceecCCCCCcchhhhhhhhcccC
Confidence 344455565554 45999999997544 344466666655321 2357777777766666666 99999
Q ss_pred CcEEEeCCC-CHHHHHHHHHHH
Q 042954 140 AADFLIKPV-RRNELRNLWQHV 160 (720)
Q Consensus 140 A~dYL~KP~-~~~eL~~~l~~v 160 (720)
+++++.-=+ +.++++..++.+
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHHHH
Confidence 998876554 566666655554
No 279
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=44.49 E-value=2.4e+02 Score=26.64 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=68.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC----CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG----YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g----yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.++++|+.+...... +.......+ ..+.......+..+++.. .|++|+=... +.-|..+++.+..
T Consensus 47 ~~~l~i~G~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~~----- 115 (172)
T PF00534_consen 47 NYKLVIVGDGEYKKE-LKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMAC----- 115 (172)
T ss_dssp TEEEEEESHCCHHHH-HHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHHT-----
T ss_pred CeEEEEEcccccccc-ccccccccccccccccccccccccccccccc----ceeccccccc-ccccccccccccc-----
Confidence 357888874443333 444444433 233333334566667654 6888876665 4456677777743
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.+|||+ +... ...+.+..+..+|+..+.+.++|...|..++...
T Consensus 116 g~pvI~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 116 GCPVIA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp T-EEEE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccceee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 457764 4433 3356777888999999999999999999988754
No 280
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=44.46 E-value=76 Score=36.54 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.+.+..+++ ..+|+|.+|..-.. ..-++++++|++.. ++++||+ -.-.+.+.+..++++||+.+.
T Consensus 226 ~~r~~~L~~---aG~d~I~vd~a~g~~~~~~~~i~~i~~~~--~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVK---AGVDVIVIDSSHGHSIYVIDSIKEIKKTY--PDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHhHHHHHHHHHHHhC--CCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 355655554 34899999995542 34678899998875 7788886 445567888999999998764
No 281
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=44.39 E-value=2.6e+02 Score=29.06 Aligned_cols=68 Identities=24% Similarity=0.181 Sum_probs=52.9
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCC-------CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELP-------SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP-------~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
.+.+.+++.+..+. .+|-|.+--..| .-.|++.++++++.. .+|+|.|-+- +.+.+.++++.||++
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv~~v~~~Ga~g 182 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENVPEVLEAGADG 182 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHhCCCe
Confidence 37788888887653 389998876444 457999999999875 4899988775 578889999999987
Q ss_pred EE
Q 042954 143 FL 144 (720)
Q Consensus 143 YL 144 (720)
.-
T Consensus 183 VA 184 (211)
T COG0352 183 VA 184 (211)
T ss_pred EE
Confidence 64
No 282
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.20 E-value=1.7e+02 Score=31.40 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=52.5
Q ss_pred ccEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHH---HHHHHcCCCCceEEEEecc--CCCCCHHHHHHHHHhc
Q 042954 41 VLRVLLVEADDS---TRQIISALLRKCGYRVAAVPDGLAA---WETLKCRPHSIDLVLTEVE--LPSISGFALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDDd~~---~r~~L~~lL~~~gyeV~~A~sg~eA---le~L~~~~~~pDLVLlDv~--MP~~dGieLL~~Ir~~ 112 (720)
..+|.+|+-|.. ....++...+..+|.+..+.+..+. ++.+... ..+|+||+|.- ++. ..++++++++.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~Gr~~~--~~~~l~el~~~ 179 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTAGKNYR--ASETVEEMIET 179 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECCCCCcC--CHHHHHHHHHH
Confidence 357888887654 3334455555568888877766443 4444321 35999999983 331 12333333322
Q ss_pred c--CCCCCeEEEEeccCCHH---HHHHHH-HcCCcEEE
Q 042954 113 D--VCKNIPVIMMSLHDSIS---MVLKCM-LKGAADFL 144 (720)
Q Consensus 113 ~--~~p~ipVIvLTs~~d~e---~~~~Al-~~GA~dYL 144 (720)
. ..|.-.+++|++..... ...+.+ ..++++++
T Consensus 180 ~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I 217 (270)
T PRK06731 180 MGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV 217 (270)
T ss_pred HhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEE
Confidence 1 11444466676543332 333333 34455553
No 283
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=44.11 E-value=2.7e+02 Score=30.64 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=61.0
Q ss_pred ccEEEEEec----CHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC------------CCC
Q 042954 41 VLRVLLVEA----DDSTRQIISALLRKCG-YRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP------------SIS 101 (720)
Q Consensus 41 ~~rVLIVDD----d~~~r~~L~~lL~~~g-yeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP------------~~d 101 (720)
...+++||- .....+.++.+=+... ..|.. +.+.+.|..+++. ..|.|++.+ -| +..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCCC
Confidence 357777763 2334444444433332 44443 6788888777653 478887632 11 112
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
-+.++..+.+......+|||.--+-.+...+.+|+.+||+..+.
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23444444433211258998777888899999999999998876
No 284
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=43.97 E-value=75 Score=31.32 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=50.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEE---------------EEECCHHHHHHHHH-cCCCCceEEEEec-cCCCCCH
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRV---------------AAVPDGLAAWETLK-CRPHSIDLVLTEV-ELPSISG 102 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV---------------~~A~sg~eAle~L~-~~~~~pDLVLlDv-~MP~~dG 102 (720)
+..||||+..-..+.+.+.++|+...+.+ .....+.-.-.++. .....||+||+|= ..-|-.-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~s 111 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTS 111 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHH
Confidence 56899999999999999999998775322 22222222222222 1225699999985 3334444
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
+.+...|+.........+|+||+-.
T Consensus 112 IA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 112 IAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HhhheeHHHhhhccCeeEEEEeCCC
Confidence 5555555554432446899998754
No 285
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.95 E-value=1.4e+02 Score=26.84 Aligned_cols=77 Identities=22% Similarity=0.164 Sum_probs=47.2
Q ss_pred ccEEEEEecCH----HHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 41 VLRVLLVEADD----STRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 41 ~~rVLIVDDd~----~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
+.+|||+=..- .+...+++++++.|+++.. +.+..++-+.+ ..+|+||+--++- ..+..|++....
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~----~~~Dvill~pqi~-----~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKL----DDADVVLLAPQVA-----YMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhc----CCCCEEEECchHH-----HHHHHHHHHhhh
Confidence 45787776554 3445677777778877655 44555544433 3489999875432 234455554333
Q ss_pred CCCeEEEEecc
Q 042954 116 KNIPVIMMSLH 126 (720)
Q Consensus 116 p~ipVIvLTs~ 126 (720)
.++||+++...
T Consensus 74 ~~ipv~~I~~~ 84 (95)
T TIGR00853 74 KGIPVEVINGA 84 (95)
T ss_pred cCCCEEEeChh
Confidence 46899988753
No 286
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.87 E-value=1.7e+02 Score=31.28 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCccEEEEEecCHH---HHHHHHHHHHhCCCEEEEECC---HH----HHHHHHHcCCCCceEEEEecc--CCCCCHHHHH
Q 042954 39 RMVLRVLLVEADDS---TRQIISALLRKCGYRVAAVPD---GL----AAWETLKCRPHSIDLVLTEVE--LPSISGFALL 106 (720)
Q Consensus 39 ~m~~rVLIVDDd~~---~r~~L~~lL~~~gyeV~~A~s---g~----eAle~L~~~~~~pDLVLlDv~--MP~~dGieLL 106 (720)
....+|+|||-|.. -.+.++.+.+..+..+..... .. ++++.+.. ..+|+||+|.- ++. -..++
T Consensus 98 ~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~G~~~~--d~~~~ 173 (272)
T TIGR00064 98 KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTAGRLQN--KVNLM 173 (272)
T ss_pred hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCCCCCcc--hHHHH
Confidence 34579999998763 223445555666766554322 21 33444333 34999999983 331 22333
Q ss_pred HHHHh---cc-----CCCCCeEEEEeccCCHHHHHHH
Q 042954 107 TLVME---HD-----VCKNIPVIMMSLHDSISMVLKC 135 (720)
Q Consensus 107 ~~Ir~---~~-----~~p~ipVIvLTs~~d~e~~~~A 135 (720)
.+|++ .. ..++-.++++.+....+.+..+
T Consensus 174 ~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 210 (272)
T TIGR00064 174 DELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA 210 (272)
T ss_pred HHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH
Confidence 33322 11 1145567777766555444333
No 287
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.86 E-value=1.5e+02 Score=29.34 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC--CCEEEEECCH-------HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC--GYRVAAVPDG-------LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~--gyeV~~A~sg-------~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
..+|.++-..+.+.+.+.+.|+.. +..|+.+.++ ++.++.+.. ..+|||++-+.+|... .++...+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQE--RWIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHHH
Confidence 579999999999999998888776 5777765554 334455555 4599999999999755 45666666
Q ss_pred cc
Q 042954 112 HD 113 (720)
Q Consensus 112 ~~ 113 (720)
..
T Consensus 124 ~l 125 (172)
T PF03808_consen 124 RL 125 (172)
T ss_pred HC
Confidence 54
No 288
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=43.60 E-value=1.2e+02 Score=32.84 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=56.7
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEE--ECCHHHH----HHHHHcCCCCceEEEEeccCCCCC--HHHHHHHHHhcc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAA--VPDGLAA----WETLKCRPHSIDLVLTEVELPSIS--GFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~--A~sg~eA----le~L~~~~~~pDLVLlDv~MP~~d--GieLL~~Ir~~~ 113 (720)
..++++||....+..|..+=-.. .++. ..+..+. +..++... -=.+|.|-.||.++ |..|+++.++.
T Consensus 31 ~D~iaaEDTR~t~~LL~~~~I~~--~~is~h~hne~~~~~~li~~l~~g~--~valVSDAG~P~ISDPG~~LV~~a~~~- 105 (275)
T COG0313 31 VDVIAAEDTRVTRKLLSHLGIKT--PLISYHEHNEKEKLPKLIPLLKKGK--SVALVSDAGTPLISDPGYELVRAAREA- 105 (275)
T ss_pred CCEEEEeccHHHHHHHHHhCCCC--ceecccCCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcccCccHHHHHHHHHc-
Confidence 57999999998887665542222 1222 2344443 34444321 33567899999764 99999999986
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcC
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKG 139 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~G 139 (720)
+++|+.+.+....-.+ .+-.|
T Consensus 106 ---gi~V~~lPG~sA~~tA--L~~SG 126 (275)
T COG0313 106 ---GIRVVPLPGPSALITA--LSASG 126 (275)
T ss_pred ---CCcEEecCCccHHHHH--HHHcC
Confidence 4899999987754333 33455
No 289
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.46 E-value=2.9e+02 Score=30.35 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=63.6
Q ss_pred cEEEEEec--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----H------------HcCCCCceEEEEeccCCCC
Q 042954 42 LRVLLVEA--DDS---TRQIISALLRKCGYRVAAVPDGLAAWET----L------------KCRPHSIDLVLTEVELPSI 100 (720)
Q Consensus 42 ~rVLIVDD--d~~---~r~~L~~lL~~~gyeV~~A~sg~eAle~----L------------~~~~~~pDLVLlDv~MP~~ 100 (720)
.+|+||-. .+. ....|...|...|++|.........+.. + ......+|+||+ -|.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 46888732 233 3455666677778888775543222210 0 000113566665 277
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|| .+|+..+... ...+||+-+- .|=.+||.- +..+++...|..++++.-.
T Consensus 82 DG-T~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 82 DG-TILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDYR 131 (306)
T ss_pred CH-HHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCce
Confidence 88 4556655543 2568888554 366789975 7789999999999887643
No 290
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.18 E-value=2.1e+02 Score=29.04 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=46.6
Q ss_pred EEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe--CCCCHHHHHHHHHHH
Q 042954 90 LVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI--KPVRRNELRNLWQHV 160 (720)
Q Consensus 90 LVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~--KP~~~~eL~~~l~~v 160 (720)
|-++|...--...++.++.|++. .++||++...-.+...+..+++.||+..++ ..+..+++...+..+
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 44444443333467888888876 379999876666677788899999999973 334456666666655
No 291
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=43.17 E-value=74 Score=33.62 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=46.3
Q ss_pred cEEEEEecCH------HHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 42 LRVLLVEADD------STRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 42 ~rVLIVDDd~------~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
||||++-... .....+...|.+.|++|.. +.+.......+.. ..||||.+-......-...++..+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccCccCHHHHHHHH----
Confidence 4788886553 3566677888888988776 3333344444444 5699999865444444444444443
Q ss_pred CCCCeEEEEecc
Q 042954 115 CKNIPVIMMSLH 126 (720)
Q Consensus 115 ~p~ipVIvLTs~ 126 (720)
..+|+|+ |-+
T Consensus 75 -~~~~~v~-~~h 84 (365)
T cd03825 75 -DRKPVVW-TLH 84 (365)
T ss_pred -cCCCEEE-Ecc
Confidence 2467664 444
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.12 E-value=1.3e+02 Score=35.65 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=46.0
Q ss_pred cEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccC-CCCC--HHHHHHHHHhccCC
Q 042954 42 LRVLLVEADDST---RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVEL-PSIS--GFALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~M-P~~d--GieLL~~Ir~~~~~ 115 (720)
.+|.||+-|..- .+.+..+-+..++.+..+.+..+..+.|+.. ..+|+||+|.-- ...+ -++.+.+|+...
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-- 457 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-- 457 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCCCcchhhHHHHHHHHHHHHhh--
Confidence 478888876522 2233333344567777777776666666543 359999999831 1111 223344454432
Q ss_pred CCCeEEEEeccCC
Q 042954 116 KNIPVIMMSLHDS 128 (720)
Q Consensus 116 p~ipVIvLTs~~d 128 (720)
....++|+.....
T Consensus 458 ~~a~lLVLpAtss 470 (559)
T PRK12727 458 QVTSLLVLPANAH 470 (559)
T ss_pred cCCcEEEEECCCC
Confidence 2335666655544
No 293
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=42.96 E-value=20 Score=40.33 Aligned_cols=48 Identities=8% Similarity=-0.185 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccc--hhhhHHHHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTD--MERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~--~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
-.|+.-|+.+++.+++.+ +..... .........++.||++||||.--+
T Consensus 40 ltHslev~~i~r~~~~~l-~~~~~~~~~~~~~~~~l~~~a~L~HDiGhpPf 89 (381)
T TIGR01353 40 LTHSLEVAQVGRSIANLI-GLRYDLELEELGPFERLAETACLAHDIGNPPF 89 (381)
T ss_pred hHHHHHHHHHHHHHHHHH-hhhcccccccccccHHHHHHHHHHhcCCCCCC
Confidence 458888888888888877 431110 001124567889999999999543
No 294
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=42.43 E-value=79 Score=34.44 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhccCCCCCeEE--EEeccCCHHHHHHHHHcCCcEEEeCC-----CCHHHHHHHHHHHHhhcc
Q 042954 101 SGFALLTLVMEHDVCKNIPVI--MMSLHDSISMVLKCMLKGAADFLIKP-----VRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVI--vLTs~~d~e~~~~Al~~GA~dYL~KP-----~~~~eL~~~l~~vlr~~~ 165 (720)
-++++|+++++.. .+||| ...+-...+.+..+++.||+.+++=- -++.+....+..++..+.
T Consensus 190 ~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~ 258 (293)
T PRK04180 190 APYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHYD 258 (293)
T ss_pred CCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcC
Confidence 4789999998863 58998 66777789999999999999986543 367777777777776654
No 295
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=42.33 E-value=57 Score=33.04 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=35.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT 93 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl 93 (720)
++|+|||-.......+.++|+..|+++....+..+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 58999999999999999999999999888865422 2 23788777
No 296
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.24 E-value=2.3e+02 Score=30.03 Aligned_cols=69 Identities=10% Similarity=-0.004 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 54 RQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
...++..+++.|.+|+. ..+....+..++. ..||+|++-.. ..++..+++.+++.. -..++|..++.
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~--~~~~~~~~~~~~~~G--~~~~~~~~~~~ 227 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY--PETGSGILRSAYEQG--LFDKFLLTDGM 227 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc--cchHHHHHHHHHHcC--CCCceEeeccc
Confidence 44566667777777653 2355556666665 34888886543 337778888887764 34556554443
Q ss_pred CC
Q 042954 127 DS 128 (720)
Q Consensus 127 ~d 128 (720)
.+
T Consensus 228 ~~ 229 (312)
T cd06346 228 KS 229 (312)
T ss_pred cC
Confidence 33
No 297
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.22 E-value=1.3e+02 Score=36.09 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.9
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.....++++|.|+...+.+ ++.|+.+...+ +-.+.|+...- .+.|+||+-+.-+ .+-..++..+|+.. |+
T Consensus 421 ~~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~-~~n~~i~~~~r~~~--p~ 491 (601)
T PRK03659 421 ANKMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEP-EDTMKIVELCQQHF--PH 491 (601)
T ss_pred hCCCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH-HHHHHHHHHHHHHC--CC
Confidence 3356788888887765543 34567665532 22334444332 4477777765433 23467778888876 88
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++||+.+.. .+...+..+.||+..+.-
T Consensus 492 ~~IiaRa~~--~~~~~~L~~~Ga~~vv~e 518 (601)
T PRK03659 492 LHILARARG--RVEAHELLQAGVTQFSRE 518 (601)
T ss_pred CeEEEEeCC--HHHHHHHHhCCCCEEEcc
Confidence 888877754 466677778999877643
No 298
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=42.12 E-value=19 Score=40.88 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccc
Q 042954 229 AYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKT 273 (720)
Q Consensus 229 ~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGK 273 (720)
-|..-|+.+++-||+.+ +++.. -..-..++.|+++||||.
T Consensus 71 THSLEVAQIgRsia~~l-~~~~~----~~~~dL~E~a~LaHDiGh 110 (412)
T COG0232 71 THSLEVAQIGRSIAREL-GLDLD----LPFEDLVETACLAHDIGH 110 (412)
T ss_pred hhhHHHHHHHHHHHHHh-ccccC----CChHHHHHHHHHHhcCCC
Confidence 47888999999999999 77711 112346788999999998
No 299
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=42.00 E-value=2.7e+02 Score=31.28 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=67.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC---CCC--HHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP---SIS--GFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP---~~d--GieLL~~Ir~~ 112 (720)
.+++||-+-+. +..++++++..|. .|.. .-+..+..+++.. .|+.|+=.... +.. |+-+++.+..
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma~- 327 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMAV- 327 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHhC-
Confidence 56777776553 4556666666553 2333 3345566666643 67777643221 123 4566676642
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||. |.... +.+.+..|..+|+..|-+.++|...|..++.
T Consensus 328 ----G~PVI~-t~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 328 ----GIPVVS-TLHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCEEE-eCCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 468875 44333 3466778899999999999999999998766
No 300
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=41.97 E-value=1.6e+02 Score=29.11 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=49.4
Q ss_pred EEECCHHHHHHHHHcCCCCceEEEEeccCCCC-------CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCc
Q 042954 69 AAVPDGLAAWETLKCRPHSIDLVLTEVELPSI-------SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA 141 (720)
Q Consensus 69 ~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-------dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~ 141 (720)
..+.+.+++.+..+ ..+|.|++--..|-. -|++.++++++.. .+||+.|-+-. .+.+.++.+.||.
T Consensus 100 ~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI~-~~~i~~l~~~Ga~ 172 (180)
T PF02581_consen 100 ASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGIT-PENIPELREAGAD 172 (180)
T ss_dssp EEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTHHHHHHTT-S
T ss_pred eecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 45889999766554 348999988876643 3899999998874 48999998764 5567788899998
Q ss_pred EEE
Q 042954 142 DFL 144 (720)
Q Consensus 142 dYL 144 (720)
++-
T Consensus 173 gvA 175 (180)
T PF02581_consen 173 GVA 175 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 301
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=41.70 E-value=15 Score=39.96 Aligned_cols=40 Identities=8% Similarity=-0.080 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
+.+..+.+..+..+|+.+ | .. ..+.+|.|++||++|++.+
T Consensus 118 w~~a~~~A~ia~~La~~~-g--~~------~~~~~y~~gLLh~lG~l~l 157 (289)
T COG1639 118 WDTAIETAMIAEGLARAL-G--RA------DSDEAYTAGLLHNLGILVL 157 (289)
T ss_pred HHHHHHHHHHHHHHHHHh-C--cc------cHHHHHHHHHHHHccHHHH
Confidence 677788888899999988 5 22 5668999999999999975
No 302
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=41.45 E-value=2.8e+02 Score=28.11 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=53.8
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHcCCCCceEEEEec-cCCC-CCHHHHHHHHHhccC
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVP-------DGLAAWETLKCRPHSIDLVLTEV-ELPS-ISGFALLTLVMEHDV 114 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~-------sg~eAle~L~~~~~~pDLVLlDv-~MP~-~dGieLL~~Ir~~~~ 114 (720)
|||-|-|...++.++.+-++.|-+++..+ +|++.+++++..+++|=||..|= ...+ ..|=+.++.+-.+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h-- 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANH-- 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcC--
Confidence 55556666777777777788888887644 78999999988776676666654 3443 4677888888776
Q ss_pred CCCCeEEE
Q 042954 115 CKNIPVIM 122 (720)
Q Consensus 115 ~p~ipVIv 122 (720)
|+|-|+=
T Consensus 81 -~~IeVLG 87 (180)
T PF14097_consen 81 -PDIEVLG 87 (180)
T ss_pred -CCceEEE
Confidence 4555543
No 303
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=41.43 E-value=1.9e+02 Score=31.79 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=51.4
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHH
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNE 152 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~e 152 (720)
+..+..+++.. .|+.|+- ..+..-|+-+++.+.. .+|||. |... ...+.+..|..+|+..|.+.++
T Consensus 290 ~~~~~~~~l~~----adv~v~~-s~~e~~~~~llEAmA~-----G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~ 355 (396)
T cd03818 290 PYDQYLALLQV----SDVHVYL-TYPFVLSWSLLEAMAC-----GCLVVG-SDTA---PVREVITDGENGLLVDFFDPDA 355 (396)
T ss_pred CHHHHHHHHHh----CcEEEEc-CcccccchHHHHHHHC-----CCCEEE-cCCC---CchhhcccCCceEEcCCCCHHH
Confidence 44566666643 5666542 2355556677777642 468875 4333 2345667788999999999999
Q ss_pred HHHHHHHHHhh
Q 042954 153 LRNLWQHVWRR 163 (720)
Q Consensus 153 L~~~l~~vlr~ 163 (720)
|...|..++..
T Consensus 356 la~~i~~ll~~ 366 (396)
T cd03818 356 LAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHhC
Confidence 99999988753
No 304
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=41.41 E-value=1.3e+02 Score=31.14 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=52.4
Q ss_pred HHhCCC--EEEEECCHHHHHHHHHcCCCCceEEE--Ee-ccCCCCCHHHHHHHHHhccCCCC-CeEEEEeccCCHHHHHH
Q 042954 61 LRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVL--TE-VELPSISGFALLTLVMEHDVCKN-IPVIMMSLHDSISMVLK 134 (720)
Q Consensus 61 L~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVL--lD-v~MP~~dGieLL~~Ir~~~~~p~-ipVIvLTs~~d~e~~~~ 134 (720)
|+..|. .++.+.+..+|+..+... .+.|= ++ +.--+.||+++++.+.+...... -.-|+..+..+...+.+
T Consensus 97 L~~~gi~v~~T~V~s~~Qa~~Aa~AG---A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~ 173 (211)
T cd00956 97 LSEEGIKTNVTAIFSAAQALLAAKAG---ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIE 173 (211)
T ss_pred HHHcCCceeeEEecCHHHHHHHHHcC---CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHH
Confidence 444454 344577788877776643 23311 11 12236799999998876643222 23555677778899999
Q ss_pred HHHcCCcEEEeCC
Q 042954 135 CMLKGAADFLIKP 147 (720)
Q Consensus 135 Al~~GA~dYL~KP 147 (720)
++..|++-+-.-|
T Consensus 174 a~~~Gad~vTv~~ 186 (211)
T cd00956 174 AALAGADAITLPP 186 (211)
T ss_pred HHHcCCCEEEeCH
Confidence 9999998665544
No 305
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=41.28 E-value=2.8e+02 Score=29.90 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeccC-----CCCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 55 QIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVEL-----PSISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~M-----P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
+.++.+-+..+..|. .+.+.++|..+.+ ..+|.|.+.-.- .+...++++.++++... ..+|||.-.+-.
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~-~~ipvia~GGI~ 237 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVG-GRIEVLLDGGIR 237 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhc-CCCeEEEeCCCC
Confidence 344444444343333 2567777766654 347877764321 13456788888876531 369999999999
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
+...+.+++..||+....=
T Consensus 238 ~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 238 RGTDVLKALALGADAVLIG 256 (299)
T ss_pred CHHHHHHHHHcCCCEEEEc
Confidence 9999999999999987654
No 306
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.98 E-value=1.6e+02 Score=34.01 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCC----CHHHHH---HHHHhccCCCCCeEE
Q 042954 49 ADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI----SGFALL---TLVMEHDVCKNIPVI 121 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~----dGieLL---~~Ir~~~~~p~ipVI 121 (720)
=+..--+.+...|...||+++. . ....||||+..--.-. .-...+ +.+++.. |..+||
T Consensus 35 ~N~~dse~~~~~l~~~G~~~~~-----------~--~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~--p~~~iv 99 (467)
T PRK14329 35 MNFADSEIVASILQMAGYNTTE-----------N--LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKN--PKLIVG 99 (467)
T ss_pred CcHHHHHHHHHHHHHCcCEECC-----------C--cccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhC--CCcEEE
Confidence 3455567788888889998765 1 1237999988754321 122333 4455544 666555
Q ss_pred EEeccCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 122 MMSLHDSISMVLKCMLK-GAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~-GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+.-.+... .-.+.++. +..||++.+-....|..++..+..
T Consensus 100 vgGc~a~~-~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~ 140 (467)
T PRK14329 100 VLGCMAER-LKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEE 140 (467)
T ss_pred EECChhcC-cHHHHHhcCCCceEEECCCCHHHHHHHHHHHhc
Confidence 44444432 23344444 448999999988888888877543
No 307
>PLN02727 NAD kinase
Probab=40.93 E-value=3.1e+02 Score=34.66 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=75.8
Q ss_pred CCcEEEeccCcCC-------CcccccccccccccCCccEEEEEecCH-HHH---HHHHHHHHhC-CCEEEEECCHHHHHH
Q 042954 12 GGMDIDLETEKDG-------SSEVVRTRWESFLPRMVLRVLLVEADD-STR---QIISALLRKC-GYRVAAVPDGLAAWE 79 (720)
Q Consensus 12 ~gf~i~lp~~~~~-------~~~~~~~~~~~~l~~m~~rVLIVDDd~-~~r---~~L~~lL~~~-gyeV~~A~sg~eAle 79 (720)
-||+++.+.-... +..+....|... +.+|+||--.. ... ..|..+|... |++|..-.+..+.+.
T Consensus 646 ~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p----~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~ 721 (986)
T PLN02727 646 DGFSCTREKVTESSLAFTHPSTQQQMLMWKST----PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFA 721 (986)
T ss_pred cCcceeehhhccccccccCcchhceeeecCCC----CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhh
Confidence 4577777744322 223333466543 34888886442 222 2355666654 888887655544431
Q ss_pred HHHc--------------CCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 80 TLKC--------------RPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 80 ~L~~--------------~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.. ....+|+||+ -|.|| .+|+.++... ...+|||-+ +.|-.+||+
T Consensus 722 ~~~~~~~~~~~~~~~~~el~~~~DLVIv----LGGDG-TlLrAar~~~-~~~iPILGI-------------NlGrLGFLT 782 (986)
T PLN02727 722 RIPGFGFVQTFYSQDTSDLHERVDFVAC----LGGDG-VILHASNLFR-GAVPPVVSF-------------NLGSLGFLT 782 (986)
T ss_pred ccccccccceecccchhhcccCCCEEEE----ECCcH-HHHHHHHHhc-CCCCCEEEE-------------eCCCccccc
Confidence 1100 0013566555 26777 4666665543 246788744 456778987
Q ss_pred CCCCHHHHHHHHHHHHhhcc
Q 042954 146 KPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 146 KP~~~~eL~~~l~~vlr~~~ 165 (720)
- ++++++...|..++.+..
T Consensus 783 d-i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 783 S-HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred c-CCHHHHHHHHHHHHcCCc
Confidence 4 888999999999987754
No 308
>PLN02591 tryptophan synthase
Probab=40.92 E-value=3.9e+02 Score=28.49 Aligned_cols=102 Identities=11% Similarity=0.053 Sum_probs=64.2
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEE-E-CCH-HHHHHHHHcCCCCceEEEEeccCCC------CCHHHHHHHHHhcc
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAA-V-PDG-LAAWETLKCRPHSIDLVLTEVELPS------ISGFALLTLVMEHD 113 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A-~sg-~eAle~L~~~~~~pDLVLlDv~MP~------~dGieLL~~Ir~~~ 113 (720)
-|||+|-...-...+...+++.|...+. + .+. .+=++.+......|=-+|.=....+ .+-.++++++|+.
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~- 187 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV- 187 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-
Confidence 5777777666677777777888866544 2 333 2223333332222322222111111 1234668888875
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.++||++=.+-.+.+.+.++++.||++.++-.
T Consensus 188 --~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 188 --TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred --CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 57999998888889999999999999999875
No 309
>PRK01581 speE spermidine synthase; Validated
Probab=40.87 E-value=1.1e+02 Score=34.60 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=44.0
Q ss_pred cEEEEEecCHHHHHHHHHH--HH---hCCC---EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCC------CCHHHHH
Q 042954 42 LRVLLVEADDSTRQIISAL--LR---KCGY---RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPS------ISGFALL 106 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~l--L~---~~gy---eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~------~dGieLL 106 (720)
.+|.+||=|+.+.+..+.. |. +..+ +|.. ..|+.+.+.. ....||+||+|+--|. .-..+++
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---~~~~YDVIIvDl~DP~~~~~~~LyT~EFy 251 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS---PSSLYDVIIIDFPDPATELLSTLYTSELF 251 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh---cCCCccEEEEcCCCccccchhhhhHHHHH
Confidence 5899999999998888752 21 1112 3433 6677766543 2346999999974332 1235677
Q ss_pred HHHHhcc
Q 042954 107 TLVMEHD 113 (720)
Q Consensus 107 ~~Ir~~~ 113 (720)
+.++...
T Consensus 252 ~~~~~~L 258 (374)
T PRK01581 252 ARIATFL 258 (374)
T ss_pred HHHHHhc
Confidence 7777764
No 310
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=40.81 E-value=3e+02 Score=29.94 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=60.9
Q ss_pred EEEEEecCHHHHHHHHHHHHh----CCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALLRK----CGYR--VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~----~gye--V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
-|||=|.+-...-.++..++. .+|. |.. +.+.+|+.+.++. .+|+|++|=+-|+ .--+.++.+ ..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e-~~~~av~~l----~~ 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE-ELKEAVKLL----GL 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH-HHHHHHHHh----cc
Confidence 578888887766656666654 3552 343 8999999999874 3899999954442 112223332 11
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
..-.++=.|+.-..+.+...-..|++-
T Consensus 232 ~~~~~lEaSGgIt~~ni~~yA~tGVD~ 258 (280)
T COG0157 232 AGRALLEASGGITLENIREYAETGVDV 258 (280)
T ss_pred CCceEEEEeCCCCHHHHHHHhhcCCCE
Confidence 334566678888888888888888753
No 311
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.76 E-value=2.5e+02 Score=30.42 Aligned_cols=93 Identities=10% Similarity=0.025 Sum_probs=61.9
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCC--CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALL----RKCG--YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL----~~~g--yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
.|||-|.+-...-.+...+ +..+ ..| +.+.+.+|+.+.+. ..+|.|.+|- -|.+.++++.+...
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~---~gaDyI~lD~-----~~~e~l~~~~~~~~- 230 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVA---AGADIIMFDN-----RTPDEIREFVKLVP- 230 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH---cCCCEEEECC-----CCHHHHHHHHHhcC-
Confidence 6888888766654444444 2333 233 44899999988875 3489999973 35677788776531
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+.++ |+..+--..+.+.+..+.|++.+-+
T Consensus 231 ~~i~-i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 231 SAIV-TEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CCce-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 2344 3445566788899999999887644
No 312
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=40.72 E-value=2.2e+02 Score=30.94 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=62.4
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHcCCCCceEEEEe---ccCC------CCCH---
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAA-----VPDGLAAWETLKCRPHSIDLVLTE---VELP------SISG--- 102 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-----A~sg~eAle~L~~~~~~pDLVLlD---v~MP------~~dG--- 102 (720)
|.-|||=+|-|+..++.--.+-++.|..+.. -.-++.-.++|+. ..||||++- -..- +++-
T Consensus 103 ~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViTGHD~~~K~~~d~~dl~~Yrn 180 (283)
T TIGR02855 103 MPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE--VRPDILVITGHDAYSKNKGNYMDLNAYRH 180 (283)
T ss_pred CCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH--hCCCEEEEeCchhhhcCCCChhhhhhhhh
Confidence 3569999999999999888888888765544 3345556777876 569998862 2211 1111
Q ss_pred ----HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 103 ----FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 103 ----ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
++.++..|......+--||+--+ -...-...+++||+ |-.-|
T Consensus 181 SkyFVeaVk~aR~y~~~~D~LVIFAGA--CQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 181 SKYFVETVREARKYVPSLDQLVIFAGA--CQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hHHHHHHHHHHHhcCCCcccEEEEcch--hHHHHHHHHHcCcc-ccCCc
Confidence 34455555554333433443332 23444556688887 55555
No 313
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.53 E-value=1.7e+02 Score=29.02 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=53.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC--GYRVAAVPD-------GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~--gyeV~~A~s-------g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
..+|.++-..+.+.+.+.+.|+.. +..++.+.+ ..+.++.+.. ..||+|++-+.+|... .++...+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPKQE--LWIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHHH
Confidence 579999999999999988888765 566665321 2224566665 4599999999999766 45566665
Q ss_pred ccCCCCCeEEEEec
Q 042954 112 HDVCKNIPVIMMSL 125 (720)
Q Consensus 112 ~~~~p~ipVIvLTs 125 (720)
.. ..+|++-.+
T Consensus 122 ~l---~~~v~~~vG 132 (171)
T cd06533 122 RL---PVPVAIGVG 132 (171)
T ss_pred HC---CCCEEEEec
Confidence 53 345555443
No 314
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=40.29 E-value=4e+02 Score=27.09 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=62.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC----CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG----YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g----yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++++|+.+. .....+..++...+ ..+...-+.++..+++.. .|++|+-... +.-|..+++.+.. .
T Consensus 231 ~~l~i~G~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~~-----g 299 (374)
T cd03801 231 VRLVIVGDG-PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMAA-----G 299 (374)
T ss_pred eEEEEEeCc-HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-ccccchHHHHHHc-----C
Confidence 556666533 33334444433322 233334445666666643 6777765444 3445667776643 4
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+|||+.. ... ..+.+..+-.+++..+.+.++|...|..++..
T Consensus 300 ~pvI~~~-~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 300 LPVVASD-VGG---IPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred CcEEEeC-CCC---hhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 6776433 332 23344557788999999999999999887653
No 315
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=40.05 E-value=1.2e+02 Score=31.50 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=55.8
Q ss_pred HHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEE---eccCCCCCHHHHHHHHHhccC--CCCCeEEEEeccCCHHHH
Q 042954 60 LLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVLT---EVELPSISGFALLTLVMEHDV--CKNIPVIMMSLHDSISMV 132 (720)
Q Consensus 60 lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVLl---Dv~MP~~dGieLL~~Ir~~~~--~p~ipVIvLTs~~d~e~~ 132 (720)
.|+..|.. ++.+.+..+|+...+.. .+.|=. -+.--+.+|+++++.+++... ..+++ |+..+..+...+
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~~v 171 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTE-VIAASVRHPRHV 171 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHHHH
Confidence 46666754 45588999998877653 333221 111225789999998876642 24565 566777889999
Q ss_pred HHHHHcCCcEEEeCC
Q 042954 133 LKCMLKGAADFLIKP 147 (720)
Q Consensus 133 ~~Al~~GA~dYL~KP 147 (720)
.++...|++-+-.-|
T Consensus 172 ~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 172 LEAALIGADIATMPL 186 (213)
T ss_pred HHHHHcCCCEEEcCH
Confidence 999999998665443
No 316
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=39.95 E-value=98 Score=30.85 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=49.2
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCC--CCCHHHHHHHHHhccCCCCCeEEEEec--cCCHHHHHHHHHcCCcEEEeC
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELP--SISGFALLTLVMEHDVCKNIPVIMMSL--HDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP--~~dGieLL~~Ir~~~~~p~ipVIvLTs--~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+.++++++++.-.. . +-++++.+| --.|+++++.|++.. +++||++... ......+..+.++||+-.+..
T Consensus 9 ~~~~~~~~~~~~~l~~-~-i~~ieig~~~~~~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h 84 (202)
T cd04726 9 LLDLEEALELAKKVPD-G-VDIIEAGTPLIKSEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVL 84 (202)
T ss_pred CCCHHHHHHHHHHhhh-c-CCEEEcCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEE
Confidence 3456666666654321 1 333555444 235789999998864 5678877432 222234567789999877766
Q ss_pred CCCH-HHHHHHHHHH
Q 042954 147 PVRR-NELRNLWQHV 160 (720)
Q Consensus 147 P~~~-~eL~~~l~~v 160 (720)
.... +.+...++.+
T Consensus 85 ~~~~~~~~~~~i~~~ 99 (202)
T cd04726 85 GAAPLSTIKKAVKAA 99 (202)
T ss_pred eeCCHHHHHHHHHHH
Confidence 5432 3344444443
No 317
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=39.88 E-value=1.2e+02 Score=35.71 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=40.4
Q ss_pred CceEEEEeccCCCCC--HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 87 SIDLVLTEVELPSIS--GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 87 ~pDLVLlDv~MP~~d--GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..|+|++|.-- +.+ -++++++||+.. |+++|| +..-...+.+..|+++||+...+
T Consensus 260 g~d~i~iD~~~-g~~~~~~~~i~~ik~~~--p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 260 GVDVVVLDSSQ-GDSIYQLEMIKYIKKTY--PELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CCCEEEEeCCC-CCcHHHHHHHHHHHHhC--CCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 48999999942 222 248999999865 666665 44456678899999999998755
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.83 E-value=2.8e+02 Score=31.44 Aligned_cols=101 Identities=16% Similarity=0.085 Sum_probs=58.2
Q ss_pred ccEEEEEecCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEecc--CCCCCHH---HHHHHHHhc
Q 042954 41 VLRVLLVEADDSTR---QIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE--LPSISGF---ALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDDd~~~r---~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~--MP~~dGi---eLL~~Ir~~ 112 (720)
..+|+||+-|..-. ..|+.+.+..|+.|..+.+..+....+... ..+|+||+|.- ++ .+-. ++.+.+...
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHhc
Confidence 46899999887422 224444444577777777777666655443 45999999983 33 2322 222333322
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHH----cCCcEEE
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCML----KGAADFL 144 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~----~GA~dYL 144 (720)
. .+.-.+++|++......+.+.++ .|.+.++
T Consensus 284 ~-~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 284 G-RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred C-CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 2 12236778887776655555442 3455554
No 319
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.76 E-value=2.3e+02 Score=31.03 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=63.9
Q ss_pred cEEEEE--ecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHH----------------HcCCCCceEEEEeccCCCC
Q 042954 42 LRVLLV--EADDS---TRQIISALLRKCGYRVAAVPDGLAAWETL----------------KCRPHSIDLVLTEVELPSI 100 (720)
Q Consensus 42 ~rVLIV--DDd~~---~r~~L~~lL~~~gyeV~~A~sg~eAle~L----------------~~~~~~pDLVLlDv~MP~~ 100 (720)
.+|.|| .+.+. +...|...|...|+++....+..+.+..- ......+|+||+ -|.
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGG 77 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGG 77 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeC
Confidence 457776 23332 34566667777888887754432222100 000013566665 277
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|| .+|+..+... ...+||+-+- .|-.+||+- +..+++...|..++++.-
T Consensus 78 DG-TlL~aar~~~-~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 78 DG-TVLSAARQLA-PCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cH-HHHHHHHHhc-CCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCCc
Confidence 88 6777777643 2478888663 377789875 678899999999988764
No 320
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=39.56 E-value=4.2e+02 Score=26.89 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=63.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+++|+-+.+. ...+..++...+. .|......++..+++.. .|++|.-.... .-|..+++.+.. .+|
T Consensus 210 ~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e-~~~~~~~Ea~a~-----G~P 278 (348)
T cd03820 210 WKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFE-GFPMVLLEAMAF-----GLP 278 (348)
T ss_pred eEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCcccc-ccCHHHHHHHHc-----CCC
Confidence 45666665433 2333444444432 34443333555555543 68888766553 336677777743 568
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
||+....... ...+..|..+++.++.+.++|...|..++.
T Consensus 279 vi~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 279 VISFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EEEecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 8754322222 234456678999999999999999998765
No 321
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=39.50 E-value=1.3e+02 Score=33.61 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=42.2
Q ss_pred CceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 87 SIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 87 ~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+|+|++|+.--... -++.+++||+.. |..+|| --.-...+.+..++.+||+...+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~--p~~~vi-aGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAF--PEHTIM-AGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhC--CCCeEE-EecccCHHHHHHHHHcCCCEEEEc
Confidence 589999999665333 468999999875 654333 333667888999999999988654
No 322
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.40 E-value=2.5e+02 Score=25.35 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=50.8
Q ss_pred EEEEEecCH--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 43 RVLLVEADD--STRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 43 rVLIVDDd~--~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+|+|+-.-. .....+...|...|+.+....+.......+..-...-=+|++...--..+-+++++.+++. .+++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~----g~~i 90 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKER----GAKV 90 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHc----CCeE
Confidence 566665443 3555677777778888887777666554443221112233445433334556777777764 5899
Q ss_pred EEEeccCCHH
Q 042954 121 IMMSLHDSIS 130 (720)
Q Consensus 121 IvLTs~~d~e 130 (720)
|++|+..+..
T Consensus 91 v~iT~~~~~~ 100 (139)
T cd05013 91 IAITDSANSP 100 (139)
T ss_pred EEEcCCCCCh
Confidence 9999987643
No 323
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=39.27 E-value=1.7e+02 Score=31.29 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=60.1
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCC--CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALL----RKCG--YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL----~~~g--yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
.|||.|++-.+.-.+...+ +..+ ..+ +.+.+.+||++.++. .+|.|.+|-.-| +-++++.+...
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~- 220 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLK- 220 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhc-
Confidence 6888888865543333322 2233 233 448999999998763 489999987544 44555544321
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..+||+ .++--+.+.+.+....||+.+-+
T Consensus 221 ~~ipi~-AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 221 GRVLLE-ASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCCcEE-EECCCCHHHHHHHHHcCCCEEEe
Confidence 236655 45566788899999999987654
No 324
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=39.23 E-value=4.4e+02 Score=28.80 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=66.6
Q ss_pred cEEEEEec---CH-HHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 42 LRVLLVEA---DD-STRQIISALLRKCGY--RVAAV--PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDD---d~-~~r~~L~~lL~~~gy--eV~~A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
++++||-+ +. .....+..+.+..+. .|... -+.++..+++.. .|+.++-.. .+.-|+-+++.+..
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma~-- 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQAC-- 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHHc--
Confidence 56677753 11 334455556555543 24442 244566666643 677776543 23446777777753
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||+.. ... ..+.+..|..+++..|-+.++|.+.|..++.
T Consensus 326 ---G~Pvi~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 ---GTPVVAAR-VGG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred ---CCCEEEec-CCC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 57887643 332 2345677888999999999999999988765
No 325
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=39.22 E-value=71 Score=33.03 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=34.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAA 77 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eA 77 (720)
|++|.|||=..-.+..+...|++.|+++....+.++.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 5789999999999999999999999999999998874
No 326
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=39.12 E-value=63 Score=39.56 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=50.2
Q ss_pred ccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe--ccCC-CCCHHHHHHHHHhcc
Q 042954 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE--VELP-SISGFALLTLVMEHD 113 (720)
Q Consensus 37 l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD--v~MP-~~dGieLL~~Ir~~~ 113 (720)
.+....+|||||-.......|..+|+..|+++..+.... ..+.+.. ..||.||+- ..-| +.+-.++++++.+
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~~-- 586 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAALA-- 586 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHHH--
Confidence 344567999999998888899999999999887754331 1122222 348887772 1112 1122445555433
Q ss_pred CCCCCeEEEEe
Q 042954 114 VCKNIPVIMMS 124 (720)
Q Consensus 114 ~~p~ipVIvLT 124 (720)
..+||+=+.
T Consensus 587 --~~iPvLGIC 595 (717)
T TIGR01815 587 --RGLPVFGVC 595 (717)
T ss_pred --CCCCEEEEC
Confidence 357888765
No 327
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.08 E-value=2.5e+02 Score=32.38 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=54.4
Q ss_pred ccEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHcCCCCceEEEEecc--CC-CCCHHHHHH
Q 042954 41 VLRVLLVEADDS---TRQIISALLRKCGYRVAAVP---DGL----AAWETLKCRPHSIDLVLTEVE--LP-SISGFALLT 107 (720)
Q Consensus 41 ~~rVLIVDDd~~---~r~~L~~lL~~~gyeV~~A~---sg~----eAle~L~~~~~~pDLVLlDv~--MP-~~dGieLL~ 107 (720)
..+|+||+-|.. ..+.|..+-...|..+..+. ++. ++++.+.. ..+|+||+|.- ++ +...++-+.
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTaGr~~~d~~l~~eL~ 205 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTAGRLQIDEELMEELA 205 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccccCHHHHHHHH
Confidence 469999998853 23334444455565555543 332 34444444 34999999983 33 223455555
Q ss_pred HHHhccCCCCCeEEEEeccCCHHHHH--HHHH--cCCcEEEe
Q 042954 108 LVMEHDVCKNIPVIMMSLHDSISMVL--KCML--KGAADFLI 145 (720)
Q Consensus 108 ~Ir~~~~~p~ipVIvLTs~~d~e~~~--~Al~--~GA~dYL~ 145 (720)
.+.... .|+-.++|+.+....+.+. +.+. .++.+.+.
T Consensus 206 ~i~~~~-~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIl 246 (428)
T TIGR00959 206 AIKEIL-NPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVL 246 (428)
T ss_pred HHHHhh-CCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEE
Confidence 555532 2444466665554433332 3332 45555543
No 328
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.03 E-value=2.4e+02 Score=32.46 Aligned_cols=109 Identities=22% Similarity=0.149 Sum_probs=62.8
Q ss_pred ccCCccEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEecc----CCCCCHHHHHHH
Q 042954 37 LPRMVLRVLLVE----ADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE----LPSISGFALLTL 108 (720)
Q Consensus 37 l~~m~~rVLIVD----Dd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~----MP~~dGieLL~~ 108 (720)
|++|+.+|.|+- =+..--+.+...|...||+++.. . ...||||+..- ..+..-...++.
T Consensus 2 ~~~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~--~-----------~~ADviiiNTC~v~~~A~~k~~~~i~~ 68 (445)
T PRK14340 2 MPRMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAAS--E-----------EDADIVLLNTCAVRENAVERIGHYLQH 68 (445)
T ss_pred CCCCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCC--c-----------ccCCEEEEEeeeeeccHHHHHHHHHHH
Confidence 566666677764 34555677788888889988641 1 23689998762 122233344443
Q ss_pred ---HHhccCCCCCeEEEEeccCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 109 ---VMEHDVCKNIPVIMMSLHDSISMVLKCML-KGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 109 ---Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~-~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
+++.. |..+|| +|+---...-.+.++ .-..|++.-+-....+...+....
T Consensus 69 ~~~~k~~~--~~~~iv-v~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~ 122 (445)
T PRK14340 69 LKGAKRRR--KGLLVG-VLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAR 122 (445)
T ss_pred HHHHhhcC--CCCEEE-EeCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHh
Confidence 33333 555444 555432222234444 345678888888888877776654
No 329
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.83 E-value=3.8e+02 Score=30.06 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=65.1
Q ss_pred cEEEEEecC----HHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEec--------cCCCC---CHH
Q 042954 42 LRVLLVEAD----DSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEV--------ELPSI---SGF 103 (720)
Q Consensus 42 ~rVLIVDDd----~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv--------~MP~~---dGi 103 (720)
+.+++||-- ..+.+.++.+=+.+ +..|+. +.+++.|.+++.. ..|.|.+-+ +.-.. .-+
T Consensus 122 ~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pql 198 (343)
T TIGR01305 122 LKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQL 198 (343)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCHH
Confidence 567777732 33333444433333 233333 6688888888764 378887662 22111 224
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+..+.+......+|||+-.+-....++.+|+.+||+..+.-
T Consensus 199 tAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 199 SAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 4555554443334789999999999999999999999998876
No 330
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=38.60 E-value=4.4e+02 Score=28.41 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=37.2
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec----cCCHHHHHHHH-HcCCcEEEeCCCC--HHHHHHHHHHH
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL----HDSISMVLKCM-LKGAADFLIKPVR--RNELRNLWQHV 160 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs----~~d~e~~~~Al-~~GA~dYL~KP~~--~~eL~~~l~~v 160 (720)
.|++|+.- + +..+++.+. -.+|+|++.. ..+.....+.+ +.|+ +++..+-+ .+.|.+.+..+
T Consensus 253 ~d~~i~~~---g--~~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 253 ADLVICRA---G--ASTVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAGA-ALLIPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred CCEEEECC---C--HHHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCCC-EEEEEcccCCHHHHHHHHHHH
Confidence 56666521 1 344555553 2478887643 12222223334 5554 77776644 89999999987
Q ss_pred Hhh
Q 042954 161 WRR 163 (720)
Q Consensus 161 lr~ 163 (720)
+..
T Consensus 322 l~~ 324 (357)
T PRK00726 322 LSD 324 (357)
T ss_pred HcC
Confidence 764
No 331
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=38.57 E-value=62 Score=31.26 Aligned_cols=44 Identities=11% Similarity=0.207 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
..++++.++. ..+|+||+|. ++.. -..+..+.. .+..||++|..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG~~-~~~~~~~~~----Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VGVG-QSEVDIASM----ADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--CccC-hhhhhHHHh----CCEEEEEECCC
Confidence 3556666654 3599999999 6654 333444443 34566666655
No 332
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.27 E-value=3.9e+02 Score=29.20 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=62.7
Q ss_pred ccEEEEE--ecCHHH---HHHHHHHHHhCCCEEEEECCHHH---HHHH---------HHcCCCCceEEEEeccCCCCCHH
Q 042954 41 VLRVLLV--EADDST---RQIISALLRKCGYRVAAVPDGLA---AWET---------LKCRPHSIDLVLTEVELPSISGF 103 (720)
Q Consensus 41 ~~rVLIV--DDd~~~---r~~L~~lL~~~gyeV~~A~sg~e---Ale~---------L~~~~~~pDLVLlDv~MP~~dGi 103 (720)
+.+|+|| -+.+.. ...+...|...|+++........ ++.. .......+|+||+ -|.||
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDG- 79 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDG- 79 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcH-
Confidence 3468887 233433 44455666777888776432111 1100 0000113566665 27787
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
.+|+..+... ...+||+-+- .|=.+||.- ++.+++...|..++++.-
T Consensus 80 T~L~aa~~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 80 TFLSVAREIA-PRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHhc-ccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCCc
Confidence 4666666543 2478988654 466899985 889999999999987753
No 333
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=38.05 E-value=90 Score=32.65 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=41.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHc-CCCCceEEEEeccCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKC-RPHSIDLVLTEVELP 98 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~-~~~~pDLVLlDv~MP 98 (720)
.-+|.-||-++...+.-++.|++.|+ .|..... .+|++.+.. ....||+||+|..=+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 34899999999999999999999885 3444331 344444442 235699999998644
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=37.97 E-value=3.3e+02 Score=31.38 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=53.8
Q ss_pred ccEEEEEecCHHHHH---HHHHHHHhCCCEEEEEC---CHHH----HHHHHHcCCCCceEEEEecc--CC-CCCHHHHHH
Q 042954 41 VLRVLLVEADDSTRQ---IISALLRKCGYRVAAVP---DGLA----AWETLKCRPHSIDLVLTEVE--LP-SISGFALLT 107 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~---~L~~lL~~~gyeV~~A~---sg~e----Ale~L~~~~~~pDLVLlDv~--MP-~~dGieLL~ 107 (720)
..+|+||+-|..-.. .|+.+.+..|..+.... ++.+ +++..+. ..+|+||+|.- ++ +...++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~--~~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKE--NGYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCcccCHHHHHHHH
Confidence 568999998864332 33444455576665532 4333 3333333 35999999983 33 223445555
Q ss_pred HHHhccCCCCCeEEEEeccCCHHHH--HHHHH--cCCcEEEe
Q 042954 108 LVMEHDVCKNIPVIMMSLHDSISMV--LKCML--KGAADFLI 145 (720)
Q Consensus 108 ~Ir~~~~~p~ipVIvLTs~~d~e~~--~~Al~--~GA~dYL~ 145 (720)
.+...- .|+-.++++.+....+.+ .+.+. .++.+++.
T Consensus 207 ~i~~~v-~p~evllVlda~~gq~av~~a~~F~~~~~i~giIl 247 (433)
T PRK10867 207 AIKAAV-NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVIL 247 (433)
T ss_pred HHHHhh-CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEE
Confidence 554432 244446666655433332 33343 44555544
No 335
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.92 E-value=2.4e+02 Score=33.16 Aligned_cols=107 Identities=10% Similarity=0.073 Sum_probs=59.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
...|++||.|+...+.++ +.|+.+...+ .-.+.++...- .+.|.|++-+.-.. +-..++..+|+.. ++++
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~-~~~~iv~~~~~~~--~~~~ 510 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGY-EAGEIVASAREKR--PDIE 510 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChH-HHHHHHHHHHHHC--CCCe
Confidence 457788887776544433 3467666532 22444554433 34787766543222 2234556677765 7888
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
||..+.+ .+......+.||+..+ -| ..++...+.+.+
T Consensus 511 iiar~~~--~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l 547 (558)
T PRK10669 511 IIARAHY--DDEVAYITERGANQVV-MG--EREIARTMLELL 547 (558)
T ss_pred EEEEECC--HHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHh
Confidence 8887754 3444555678888555 33 233444444433
No 336
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.91 E-value=2.6e+02 Score=28.75 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=61.9
Q ss_pred HHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCC-CCeEEEEeccCCHHHHHHHH
Q 042954 60 LLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCK-NIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 60 lL~~~gy-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p-~ipVIvLTs~~d~e~~~~Al 136 (720)
.....+. -+..+.+..|+.+..+. ..|.|-+ .| +.-|++.++.++... + ++|++.+-+- +.+.+.+.+
T Consensus 99 ~~~~~~~~~~~G~~t~~E~~~A~~~---Gad~vk~---Fpa~~~G~~~l~~l~~~~--~~~ipvvaiGGI-~~~n~~~~~ 169 (206)
T PRK09140 99 RAVALGMVVMPGVATPTEAFAALRA---GAQALKL---FPASQLGPAGIKALRAVL--PPDVPVFAVGGV-TPENLAPYL 169 (206)
T ss_pred HHHHCCCcEEcccCCHHHHHHHHHc---CCCEEEE---CCCCCCCHHHHHHHHhhc--CCCCeEEEECCC-CHHHHHHHH
Confidence 3344453 34458899998887753 3788875 45 445899999998764 4 6898877655 678899999
Q ss_pred HcCCcEEE-----eC-CCCHHHHHHHHHHH
Q 042954 137 LKGAADFL-----IK-PVRRNELRNLWQHV 160 (720)
Q Consensus 137 ~~GA~dYL-----~K-P~~~~eL~~~l~~v 160 (720)
+.|++.+- .+ ..+.+++....+.+
T Consensus 170 ~aGa~~vav~s~l~~~~~~~~~i~~~a~~~ 199 (206)
T PRK09140 170 AAGAAGFGLGSALYRPGQSAEEVAERARAF 199 (206)
T ss_pred HCCCeEEEEehHhcccccChHHHHHHHHHH
Confidence 99998775 32 12335555555544
No 337
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=37.57 E-value=6e+02 Score=28.22 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=65.1
Q ss_pred cEEEEEec----CHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHcCCCCceEEEEecc----------CC-CCC--
Q 042954 42 LRVLLVEA----DDSTRQIISALLRKCG-YRVAA--VPDGLAAWETLKCRPHSIDLVLTEVE----------LP-SIS-- 101 (720)
Q Consensus 42 ~rVLIVDD----d~~~r~~L~~lL~~~g-yeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~----------MP-~~d-- 101 (720)
..++++|- ...+.+.++.+-+... ..|+. +.+.+.|..+++. ..|.|.+-+. +. +..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~ 185 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGW 185 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCch
Confidence 36677765 2445555655555443 33332 6688888887764 3677764421 11 111
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++..+..+++. .++|||.-.+-....++.+|+.+||+..+.=
T Consensus 186 ~l~ai~ev~~a---~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 186 QLAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHHh---cCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 45567777664 3689999999999999999999999888764
No 338
>PRK00955 hypothetical protein; Provisional
Probab=37.55 E-value=2.1e+02 Score=34.52 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=71.8
Q ss_pred cEEEEE------ecCHHHHHHHHHHHHhCCCEEEEECCH----HHHHHHHHcCCCCceEEEE------e-----------
Q 042954 42 LRVLLV------EADDSTRQIISALLRKCGYRVAAVPDG----LAAWETLKCRPHSIDLVLT------E----------- 94 (720)
Q Consensus 42 ~rVLIV------DDd~~~r~~L~~lL~~~gyeV~~A~sg----~eAle~L~~~~~~pDLVLl------D----------- 94 (720)
+-|+|| |-.+.-..+|.++|+..||.|....-. .+.+..| ..|.|++. |
T Consensus 14 ~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~----g~P~l~~~vs~g~~dsmv~~yt~~~~ 89 (620)
T PRK00955 14 LDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL----GKPRLFFLVSAGNMDSMVNHYTASKK 89 (620)
T ss_pred cCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh----CCCcEEEEeccccHHHHHhhcchhhh
Confidence 467776 444567788999999999999875422 2333333 34888774 1
Q ss_pred -----ccCC--------CCCHHHHHHHHHhccCCCCCeEEEEeccCCHH----------HH-HHHHHcCCcEEEeCCCCH
Q 042954 95 -----VELP--------SISGFALLTLVMEHDVCKNIPVIMMSLHDSIS----------MV-LKCMLKGAADFLIKPVRR 150 (720)
Q Consensus 95 -----v~MP--------~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e----------~~-~~Al~~GA~dYL~KP~~~ 150 (720)
.--| +-.-+.+++.||+.. |++|||+=-.+.+.. .+ ...+..-..|||+.--..
T Consensus 90 ~r~~d~ytpgg~~~~rpdra~i~y~~~ik~~~--p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~GeGE 167 (620)
T PRK00955 90 LRSKDAYSPGGKMGLRPDRATIVYCNKIKEAY--PDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGMGE 167 (620)
T ss_pred cccccccCCCCccCCCcchHHHHHHHHHHHHC--CCCcEEeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECCcH
Confidence 1112 223356678888876 899887654444331 11 122333345999998888
Q ss_pred HHHHHHHHHHHhh
Q 042954 151 NELRNLWQHVWRR 163 (720)
Q Consensus 151 ~eL~~~l~~vlr~ 163 (720)
..|.++++++..+
T Consensus 168 ~t~~eL~~~L~~g 180 (620)
T PRK00955 168 KPIVEIARRLKAG 180 (620)
T ss_pred HHHHHHHHHHHcC
Confidence 8888887775443
No 339
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=37.51 E-value=1.4e+02 Score=34.75 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.++.+.|.+ ..+|+|++|..-.. ..-++++++|+... +++|||+ -.-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~--agvdvivvD~a~g~~~~vl~~i~~i~~~~--p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVE--AGVDVLVVDTAHGHSEGVLDRVREIKAKY--PDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHH--hCCCEEEEECCCCcchhHHHHHHHHHhhC--CCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 445555544 34899999975332 34568899998865 7888886 556678889999999997664
No 340
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.51 E-value=3e+02 Score=29.27 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHH
Q 042954 51 DSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSIS 130 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e 130 (720)
......+...|...|+.+....+.. . .....|+||+ -|.|| .+|+.++.. .+||+-+.
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~---~----~~~~~d~vi~----iGGDG-T~L~a~~~~----~~Pilgin------ 69 (256)
T PRK14075 12 EKEAKFLKEKISKEHEVVEFCEASA---S----GKVTADLIIV----VGGDG-TVLKAAKKV----GTPLVGFK------ 69 (256)
T ss_pred HHHHHHHHHHHHHcCCeeEeecccc---c----ccCCCCEEEE----ECCcH-HHHHHHHHc----CCCEEEEe------
Confidence 3455567777777788877664433 1 1134788776 26777 466666654 67887655
Q ss_pred HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 131 MVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 131 ~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
.|=.+||. .++.+++...+..++++.-
T Consensus 70 -------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 70 -------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred -------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 45578887 5888999999999887653
No 341
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=37.40 E-value=51 Score=35.18 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=50.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHcCCCCceEEEEeccCCCC--------------
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVP-------DGLAAWETLKCRPHSIDLVLTEVELPSI-------------- 100 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-------sg~eAle~L~~~~~~pDLVLlDv~MP~~-------------- 100 (720)
|||||+-..-.+-..|...|...||+|.... +..+..+++.. ..||+||-=..+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEeccceeecHHhhhhChhhhHHHh
Confidence 6999999999999999999999899888763 55666667665 349998865544322
Q ss_pred -CHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 101 -SGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 101 -dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
.+...|.++-.. ..+++|.+|+.
T Consensus 79 ~~~~~~la~~~~~---~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKE---RGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHH---CT-EEEEEEEG
T ss_pred hHHHHHHHHHHHH---cCCcEEEeecc
Confidence 222222222222 36799999874
No 342
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=37.39 E-value=2.1e+02 Score=30.56 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=67.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+++||-+.+... .+++.+ .....+...-+.++..+++.. .|++|+-.. +.-|+-+++.+.. .+|||
T Consensus 222 ~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama~-----G~Pvi 288 (351)
T cd03804 222 KRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMAS-----GTPVI 288 (351)
T ss_pred CcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHHc-----CCCEE
Confidence 6788888776532 333311 122444445567777787754 688776554 3446667776643 46888
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
... ... ..+.+..|..+++..|-+.++|...|..++..
T Consensus 289 ~~~-~~~---~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 289 AYG-KGG---ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred EeC-CCC---CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 653 332 23445667789999999999999999887764
No 343
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=37.36 E-value=1.5e+02 Score=31.23 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=46.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC-------CCEEEEECCHHHHHHHHHcCCC-CceEEEEeccCCCCCH-----HHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC-------GYRVAAVPDGLAAWETLKCRPH-SIDLVLTEVELPSISG-----FALLTL 108 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~-------gyeV~~A~sg~eAle~L~~~~~-~pDLVLlDv~MP~~dG-----ieLL~~ 108 (720)
.+|-+||=|+.+.+..+..|... ..++ ...||...++. ... .||+||+|+--|...+ .++.+.
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~---~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~ 176 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKE---TQEEKYDVIIVDLTDPDGPAPNLFTREFYQL 176 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHT---SSST-EEEEEEESSSTTSCGGGGSSHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHh---ccCCcccEEEEeCCCCCCCcccccCHHHHHH
Confidence 58999999999999999988642 1344 46666665554 333 6999999998775433 467777
Q ss_pred HHhcc
Q 042954 109 VMEHD 113 (720)
Q Consensus 109 Ir~~~ 113 (720)
+++..
T Consensus 177 ~~~~L 181 (246)
T PF01564_consen 177 CKRRL 181 (246)
T ss_dssp HHHHE
T ss_pred HHhhc
Confidence 76654
No 344
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=37.31 E-value=60 Score=34.78 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~ 158 (720)
.++++++||+.. +++|+|+||=+.. .....+|-++|+++.|.-.+..+|-.....
T Consensus 74 ~~~~~~~ir~~~--~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKE--PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHC--TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccC--CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 468888888544 7899999996542 345667789999999999887766554433
No 345
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=37.13 E-value=2.6e+02 Score=29.68 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCC-CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 103 FALLTLVMEHDVCK-NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 103 ieLL~~Ir~~~~~p-~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
++++++|++.- + ++|||...+-.+.+.+.+++..||+...
T Consensus 230 ~~~v~~i~~~~--~~~ipiia~GGI~~~~da~~~l~~GAd~V~ 270 (289)
T cd02810 230 LRWVARLAARL--QLDIPIIGVGGIDSGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHHHhc--CCCCCEEEECCCCCHHHHHHHHHcCccHhe
Confidence 56678887753 3 7999999999999999999999976543
No 346
>CHL00101 trpG anthranilate synthase component 2
Probab=37.00 E-value=44 Score=33.60 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=34.3
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT 93 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl 93 (720)
|||||.....-..|.+.|+..|+++..+......+..+.. ..||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999888776644322222222 23777764
No 347
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=36.88 E-value=2.5e+02 Score=28.75 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=51.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH--HHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR-VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISG--FALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG--ieLL~~Ir~~~~~p 116 (720)
..+|..||-++...+.++.-++..+.. +.. ..+..+.+.. ....||+|++|- |-..| -++++.|.......
T Consensus 76 a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---~~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~l~ 150 (199)
T PRK10909 76 AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---PGTPHNVVFVDP--PFRKGLLEETINLLEDNGWLA 150 (199)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh---cCCCceEEEECC--CCCCChHHHHHHHHHHCCCcC
Confidence 358999999999999999998887642 332 4555554432 113499999996 32334 36777776642222
Q ss_pred CCeEEEEeccC
Q 042954 117 NIPVIMMSLHD 127 (720)
Q Consensus 117 ~ipVIvLTs~~ 127 (720)
.-.||++....
T Consensus 151 ~~~iv~ve~~~ 161 (199)
T PRK10909 151 DEALIYVESEV 161 (199)
T ss_pred CCcEEEEEecC
Confidence 23466565433
No 348
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.85 E-value=3.6e+02 Score=30.78 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCC----CHHHH---HHHHHhccCCCCCeEE
Q 042954 49 ADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI----SGFAL---LTLVMEHDVCKNIPVI 121 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~----dGieL---L~~Ir~~~~~p~ipVI 121 (720)
=+..--+.+...|...||+++.- ....||||+..----. .-+.. ++.+++.. |.++||
T Consensus 15 ~N~~ds~~~~~~l~~~g~~~~~~-------------~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~--p~~~vv 79 (444)
T PRK14325 15 MNEYDSSKMADLLGAEGYELTDD-------------PEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKN--PDLIIG 79 (444)
T ss_pred CcHHHHHHHHHHHHHCcCEECCC-------------cCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhC--CCCEEE
Confidence 34555667888888889987641 1237999987633211 11222 44445544 677666
Q ss_pred EEeccCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 122 MMSLHDSISMVLKCML-KGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~-~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
+--.+.. ....++++ ....||++-+-....|..+|..+.
T Consensus 80 vgGc~as-~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~ 119 (444)
T PRK14325 80 VGGCVAQ-QEGEEILKRAPYVDIVFGPQTLHRLPEMIARAR 119 (444)
T ss_pred EECchhc-cCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 4444443 23345553 556788988888788887777653
No 349
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.73 E-value=4.9e+02 Score=27.67 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=36.9
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc----CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHH
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH----DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVW 161 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~----~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vl 161 (720)
.|++|+.- + +..+++.+. -.+|||++... .......+.+..+-.+++..+- +.++|.++|..++
T Consensus 253 ad~~v~~s---g--~~t~~Eam~-----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA-----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH-----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 56666521 1 344555553 35788875321 2222222333333457887764 8999999988876
Q ss_pred h
Q 042954 162 R 162 (720)
Q Consensus 162 r 162 (720)
.
T Consensus 323 ~ 323 (350)
T cd03785 323 S 323 (350)
T ss_pred c
Confidence 5
No 350
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=36.66 E-value=28 Score=39.89 Aligned_cols=40 Identities=3% Similarity=-0.106 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
--.|+.-|+.+++.+++.+ +++. ..+..|+++||||.--+
T Consensus 71 RltHslev~~~~r~~~~~~-~~~~---------~~~~~~~l~hd~GhpPf 110 (428)
T PRK03007 71 RLTHSLEVAQIGRGIAAGL-GCDP---------DLVDLAGLAHDIGHPPY 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCH---------HHHHHHHHHhcCCCCCC
Confidence 3568889999999999988 7642 35778999999999543
No 351
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.65 E-value=76 Score=32.48 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLT 93 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLl 93 (720)
|++|.|||----....+...|+..|+ ++....+.++. ..+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 46999999888888899999999998 78788776653 23788887
No 352
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=36.63 E-value=3e+02 Score=30.76 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=50.6
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
.+.+..++.+.... .+|.|++--..|. .-|++.++++.+.. .+|||.+-+- +.+.+.+++..|+++
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~---~iPv~AiGGI-~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA---PIPWFAIGGI-DKSNIPEVLQAGAKR 318 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHHHcCCcE
Confidence 37788888776643 4899987654442 35789999998753 5899988765 477888899999988
Q ss_pred EEe
Q 042954 143 FLI 145 (720)
Q Consensus 143 YL~ 145 (720)
+-+
T Consensus 319 VAv 321 (347)
T PRK02615 319 VAV 321 (347)
T ss_pred EEE
Confidence 754
No 353
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=36.49 E-value=56 Score=32.74 Aligned_cols=83 Identities=18% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC----CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 55 QIISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP----SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
..+.. |+..||.+.. +..+...++.+.. ..||.|-+|..+. +.....+++.|......-.+ -|+.++-.+
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~--l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~via~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLAS--LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGI-KVIAEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHH--HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT--EEEEECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhh--cccccceeecccccccchhhHHHHHHHHHHHhhcccc-ccceeecCC
Confidence 45554 7788988765 6566666666665 4499999999754 22344566655443322344 455788888
Q ss_pred HHHHHHHHHcCCc
Q 042954 129 ISMVLKCMLKGAA 141 (720)
Q Consensus 129 ~e~~~~Al~~GA~ 141 (720)
.+....+.+.|++
T Consensus 214 ~~~~~~l~~~G~~ 226 (236)
T PF00563_consen 214 EEQLELLKELGVD 226 (236)
T ss_dssp HHHHHHHHHTTES
T ss_pred HHHHHHHHHcCCC
Confidence 8888899999976
No 354
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.47 E-value=1.8e+02 Score=30.19 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=58.1
Q ss_pred HHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
+.+..+..+.-+.. +.+..|+.+.++ ..+|+|=+ .| +.-|.+.++.++... +++|++ -|+--+.+.+.+
T Consensus 101 v~~~~~~~~i~~iPG~~T~~E~~~A~~---~Gad~vkl---FPa~~~G~~~ik~l~~~~--p~ip~~-atGGI~~~N~~~ 171 (213)
T PRK06552 101 TAKICNLYQIPYLPGCMTVTEIVTALE---AGSEIVKL---FPGSTLGPSFIKAIKGPL--PQVNVM-VTGGVNLDNVKD 171 (213)
T ss_pred HHHHHHHcCCCEECCcCCHHHHHHHHH---cCCCEEEE---CCcccCCHHHHHHHhhhC--CCCEEE-EECCCCHHHHHH
Confidence 33444455555554 889999988875 34788886 44 456899999998865 789877 566667899999
Q ss_pred HHHcCCcEEEe
Q 042954 135 CMLKGAADFLI 145 (720)
Q Consensus 135 Al~~GA~dYL~ 145 (720)
.+.+|++.+-.
T Consensus 172 ~l~aGa~~vav 182 (213)
T PRK06552 172 WFAAGADAVGI 182 (213)
T ss_pred HHHCCCcEEEE
Confidence 99999776543
No 355
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=36.24 E-value=2.4e+02 Score=30.72 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=62.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEe---ccCC------CCCH----
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTE---VELP------SISG---- 102 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlD---v~MP------~~dG---- 102 (720)
.-|||=+|-|+..++.--.+-+..|..+.. + .=+..-.++|+. ..||||++- -.+- +++.
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlViTGHD~~~K~~~d~~dl~~YrnS 182 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE--YRPDILVITGHDGYLKNKKDYSDLNNYRNS 182 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH--cCCCEEEEeCchhhhcCCCChhhhhhhhcc
Confidence 459999999999999888888888876554 2 233445667766 569998863 2111 1111
Q ss_pred ---HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 103 ---FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 103 ---ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
++.++.+|......+--||+--+ -...-...+++||+ |-.-|
T Consensus 183 kyFVeaV~~aR~~ep~~D~LVIfAGA--CQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 183 KYFVEAVKEARKYEPNLDDLVIFAGA--CQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEcch--hHHHHHHHHHcCcc-ccCCc
Confidence 35556666665444444444333 23444556688887 55555
No 356
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=36.20 E-value=2.9e+02 Score=29.66 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=59.8
Q ss_pred EEEEEecCHHHHHHHHHHH---H-hCC--CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALL---R-KCG--YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL---~-~~g--yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
-|||.|++-.+.-.+...+ + ..+ ..+ +.+.+.+|+.+.+.. .+|+|.+|-. +.+.++++.+...
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~-----~~e~l~~~~~~~~- 224 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNM-----SPEELREAVALLK- 224 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCc-----CHHHHHHHHHHcC-
Confidence 6888888766553333222 2 233 223 458999999988753 4899999954 2566777665431
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.++||++ ++--..+.+.+..+.|++.+-
T Consensus 225 ~~ipi~A-iGGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 225 GRVLLEA-SGGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCCcEEE-ECCCCHHHHHHHHHcCCCEEE
Confidence 2467654 445568888888999987654
No 357
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=36.13 E-value=2.9e+02 Score=29.42 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=34.9
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCC---EEEE--EC---CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 43 RVLLVEADDSTRQIISALLRKCGY---RVAA--VP---DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gy---eV~~--A~---sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
+|.|+-++......+..+++..+. .|.. +. +....+..++. ..+|+||+... ..+...+++++++..
T Consensus 131 ~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~--~~~d~vv~~~~--~~~~~~~~~qa~~~g 205 (327)
T cd06382 131 SFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKN--SGDNRIIIDCS--ADILIELLKQAQQVG 205 (327)
T ss_pred EEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHh--cCceEEEEECC--HHHHHHHHHHHHHhC
Confidence 455554444456666666665542 2222 21 34444555544 33677776443 344566666666654
No 358
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=36.09 E-value=52 Score=38.81 Aligned_cols=77 Identities=25% Similarity=0.291 Sum_probs=47.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHcCCCCceEEEEec--cCCCCCH--HHHHHHHHhcc
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDG---LAAWETLKCRPHSIDLVLTEV--ELPSISG--FALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg---~eAle~L~~~~~~pDLVLlDv--~MP~~dG--ieLL~~Ir~~~ 113 (720)
|.+|||||....+-..|.++|+..|+++..+.+- ...++.+.. ..||.||+-- .-|...| .++++++.
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~d~~~~~~i~~~~~--- 75 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPSEAGCMPELLTRLR--- 75 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChhhCCCCHHHHHHHh---
Confidence 4589999999999999999999999877775532 122344433 2366666643 2232222 23444332
Q ss_pred CCCCCeEEEEe
Q 042954 114 VCKNIPVIMMS 124 (720)
Q Consensus 114 ~~p~ipVIvLT 124 (720)
..+||+-+.
T Consensus 76 --~~iPILGIC 84 (531)
T PRK09522 76 --GKLPIIGIC 84 (531)
T ss_pred --cCCCEEEEc
Confidence 357887665
No 359
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=36.08 E-value=2.1e+02 Score=30.58 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=65.7
Q ss_pred cCHHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCCeE
Q 042954 49 ADDSTRQIISALLRKC-GYRVAA------VPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~-gyeV~~------A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|.......+++++... ++.++. +.+..+||+.|.. ..++=||+-=.-+ -.+|++.|+.+.+.. .. .+
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~--lG~~rILTSGg~~~a~~g~~~L~~lv~~a--~~-~~ 172 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLAD--LGVARILTSGQQQDAEQGLSLIMELIAAS--DG-PI 172 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHH--cCCCEEECCCCCCCHHHHHHHHHHHHHhc--CC-CE
Confidence 4456667777777765 454443 5689999999987 4599999865555 468999999998765 33 34
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEE
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
||.-+--..+.+.+....|+..|-
T Consensus 173 Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 173 IMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEe
Confidence 766666677777777788988875
No 360
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=35.80 E-value=3.5e+02 Score=28.91 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE------eCCCCHHHHHHHHHHHHhhc
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL------IKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL------~KP~~~~eL~~~l~~vlr~~ 164 (720)
++++++|++.. ++|||...+-.+.+.+.+++..||+... .-|.-..++..-+...++.+
T Consensus 220 ~~~i~~i~~~~---~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKAV---EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 57888887753 6899999999999999999999986543 23544455555555544433
No 361
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=35.75 E-value=3.5e+02 Score=28.15 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=49.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p 116 (720)
..+|..||-.+...+..++.+...|. .+.. ..+..+..... . ..||+|++...+.-+ +-..+++.+...- .|
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~--~~fD~V~~~~vl~~~~~~~~~l~~~~~~L-kp 141 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-E--TPVDLILFHAVLEWVADPKSVLQTLWSVL-RP 141 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-C--CCCCEEEehhHHHhhCCHHHHHHHHHHHc-CC
Confidence 46899999999999999988887664 2333 44555432222 2 459999998765432 3446677776543 24
Q ss_pred CCeEEEE
Q 042954 117 NIPVIMM 123 (720)
Q Consensus 117 ~ipVIvL 123 (720)
.-.++++
T Consensus 142 gG~l~i~ 148 (255)
T PRK11036 142 GGALSLM 148 (255)
T ss_pred CeEEEEE
Confidence 4444433
No 362
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=35.72 E-value=94 Score=35.55 Aligned_cols=109 Identities=24% Similarity=0.199 Sum_probs=79.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+..||+|-..--+.+.+.+.|.+.||.|.. +.+..++.+++.. ...|+.+.++..+...+.+.+..+.+.. +...
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~--~~~d~~~~~v~~~~~~~~d~~~~~~~~~--~~~~ 154 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV--FFVDLGLQNVEADVVTAIDILKKLVEAV--PKGV 154 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc--cccccccceeeeccccccchhhhhhhhc--cccc
Confidence 578999999999999999999999998887 8899999888763 2368888999888899999999998765 4344
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
+|+..+-....... .+.. ..-++.+-.+++|.++
T Consensus 155 ~~v~~~~ggrp~~e----d~~~---p~~VD~~g~knlvdA~ 188 (411)
T KOG1203|consen 155 VIVIKGAGGRPEEE----DIVT---PEKVDYEGTKNLVDAC 188 (411)
T ss_pred eeEEecccCCCCcc----cCCC---cceecHHHHHHHHHHH
Confidence 55554433221111 1111 2226777788888876
No 363
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=35.54 E-value=2.1e+02 Score=29.67 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=50.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCC-C--HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSI-S--GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~-d--GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..+..+.+.... .-+|++|+.--++ . .+++++++.+. ..+|||+--+-.+.+.+.++...||+..+.-
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~vivg 213 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLVA 213 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEh
Confidence 4444555554322 4799999965432 2 37899999876 3689999888999999999999999988763
No 364
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.52 E-value=88 Score=31.66 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=34.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT 93 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl 93 (720)
|+|+|||--.-....+...|+..|+++..+.+.++ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 58999998888888888999999999999887643 21 2677775
No 365
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=35.43 E-value=4.8e+02 Score=28.18 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=54.6
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEec--------cCCCCCHHHHHHHHHhccCCCCCeEEEEec-cCCHHHHHHHHHcCCc
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEV--------ELPSISGFALLTLVMEHDVCKNIPVIMMSL-HDSISMVLKCMLKGAA 141 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv--------~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs-~~d~e~~~~Al~~GA~ 141 (720)
+.+.++|.+.++.. .+|.+-+.+ .-|. -++++|++|++.. .+|++++-+ .-+.+.+.++++.|+.
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~-l~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPG-LDFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCc-cCHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 55889999888642 378777442 1133 3599999998864 589988863 3456778899999998
Q ss_pred EEEeCCCCHHHHHHHHHHHH
Q 042954 142 DFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 142 dYL~KP~~~~eL~~~l~~vl 161 (720)
.+=.-. +|+.++...+
T Consensus 226 kiNv~T----~l~~a~~~~~ 241 (282)
T TIGR01859 226 KINIDT----DCRIAFTAAI 241 (282)
T ss_pred EEEECc----HHHHHHHHHH
Confidence 876554 4444444433
No 366
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=35.37 E-value=1.7e+02 Score=31.81 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=48.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC---C--EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCC-----CHHHHHHHH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG---Y--RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSI-----SGFALLTLV 109 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g---y--eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-----dGieLL~~I 109 (720)
.-+|.+||=|+.+.+.-+..|-... + +|. ...||.+-++ .....|||||+|..-|.. --.++.+.+
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~---~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~ 176 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR---DCEEKFDVIIVDSTDPVGPAEALFTEEFYEGC 176 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH---hCCCcCCEEEEcCCCCCCcccccCCHHHHHHH
Confidence 3589999999999999999996542 2 222 2556555544 333469999999988732 125778888
Q ss_pred Hhcc
Q 042954 110 MEHD 113 (720)
Q Consensus 110 r~~~ 113 (720)
++..
T Consensus 177 ~~~L 180 (282)
T COG0421 177 RRAL 180 (282)
T ss_pred HHhc
Confidence 7765
No 367
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=35.34 E-value=5.5e+02 Score=26.94 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=63.8
Q ss_pred cEEEEEecCH---HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEADD---STRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~---~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.+++||-+.+ .....+...++..+. .|.......+-.+++.. .|++|+=-.-++.-|.-+++.+..
T Consensus 217 ~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a~----- 287 (355)
T cd03819 217 VHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQAM----- 287 (355)
T ss_pred eEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHhc-----
Confidence 5666665443 233344444554443 34444444455555543 577665432344556777777743
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||+ |.... ..+.+..|..+|+..+.+.++|...|..++.
T Consensus 288 G~PvI~-~~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 288 GRPVIA-SDHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CCCEEE-cCCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 468874 43332 3456667778999999999999998865443
No 368
>PRK10060 RNase II stability modulator; Provisional
Probab=35.19 E-value=2.6e+02 Score=33.63 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=70.9
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccC----C-CCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 55 QIISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVEL----P-SISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~M----P-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
..+-..|+..|+.+.. +.+|-..+..|.. .++|.|=+|-.+ . +.....+++.|-.....-.+.|| ..+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-EecCC
Confidence 3445667888998776 8888899999987 459999999632 2 23455666666444322345554 66777
Q ss_pred CHHHHHHHHHcCCc---E-EEeCCCCHHHHHHHHHH
Q 042954 128 SISMVLKCMLKGAA---D-FLIKPVRRNELRNLWQH 159 (720)
Q Consensus 128 d~e~~~~Al~~GA~---d-YL~KP~~~~eL~~~l~~ 159 (720)
+.+....+...|++ + |+.||...+++...++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 77777777788873 4 46799999998876654
No 369
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=35.09 E-value=1.3e+02 Score=34.69 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCCCCeEEEEec
Q 042954 51 DSTRQIISALLRKCGYRVAAVP----DGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~A~----sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
|..+..|..+|+. ..++-+. +.++.++.. ..||||.+-..-+.. ..+++++.+|+.. |+++||+--.
T Consensus 34 Pl~L~ylAa~l~~--~~iiD~~~~~~~~~~~~~~~----~~~Dlv~is~~t~~~~~~~~ia~~iK~~~--p~~~vv~GG~ 105 (472)
T TIGR03471 34 PTWLAQPAAMIPG--SRLVDAPPHGVTIDDTLAIA----KDYDLVVLHTSTPSFPSDVKTAEALKEQN--PATKIGFVGA 105 (472)
T ss_pred ChHHHHHHHhccC--ceEEeCCcccCCHHHHHHHh----cCCCEEEEECCCcchHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 4566677777753 2333221 223444432 348999988766654 4789999999876 8888887766
Q ss_pred cCCHHHHHHHHH-cCCcEEEeCCCCH
Q 042954 126 HDSISMVLKCML-KGAADFLIKPVRR 150 (720)
Q Consensus 126 ~~d~e~~~~Al~-~GA~dYL~KP~~~ 150 (720)
+..... .+++. ....||++..-..
T Consensus 106 h~t~~p-e~~l~~~~~vD~Vv~GEgE 130 (472)
T TIGR03471 106 HVAVLP-EKTLKQGPAIDFVCRREFD 130 (472)
T ss_pred CcccCH-HHHHhcCCCeeEEEeCchH
Confidence 665433 34554 3578999986433
No 370
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.01 E-value=2e+02 Score=30.47 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=48.5
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCC-CC--HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHH-HcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPS-IS--GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCM-LKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~-~d--GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al-~~GA~dYL~ 145 (720)
+..+.++.+.+.. --.|+++|+.--+ +. -+++++++++. ..+|||.--+-.+.+.+.+++ ..|+++.+.
T Consensus 153 ~~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 3456666665422 1347888774322 12 36888888875 479999999999999999999 799887654
No 371
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=34.98 E-value=22 Score=36.03 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=11.6
Q ss_pred HhhhhcCCCcccc
Q 042954 262 LETESLMPESKTG 274 (720)
Q Consensus 262 l~~Aa~LHDIGKI 274 (720)
+-.||+|||||.+
T Consensus 46 lvvAALLHDIGhl 58 (179)
T TIGR03276 46 LIVAAFLHDIGHL 58 (179)
T ss_pred HHHHHHHHhcchh
Confidence 6789999999986
No 372
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=34.93 E-value=5.1e+02 Score=27.08 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred EecCHHHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCe
Q 042954 47 VEADDSTRQIISALLRKCGYRVAA-V-----PDGLAAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 47 VDDd~~~r~~L~~lL~~~gyeV~~-A-----~sg~eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ip 119 (720)
..|.+.+.+.++.+- +.++.|.. . .+..+..+.+.. ...|.|-.+...++ .--++++++++ .++|
T Consensus 122 l~~p~~l~eiv~avr-~~~~pVsvKir~g~~~~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~-----~~ip 193 (233)
T cd02911 122 LKDPERLSEFIKALK-ETGVPVSVKIRAGVDVDDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDIS-----TELF 193 (233)
T ss_pred cCCHHHHHHHHHHHH-hcCCCEEEEEcCCcCcCHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhc-----CCCE
Confidence 344555566666554 34554443 2 245555556655 34888777766554 22356666665 3689
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
||..-+-.+.+.+.+++..||+....
T Consensus 194 VIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 194 IIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 99988889999999999999887754
No 373
>PRK03612 spermidine synthase; Provisional
Probab=34.90 E-value=1.5e+02 Score=34.81 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=44.2
Q ss_pred cEEEEEecCHHHHHHHHH--HHHhC---CC---EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCH------HHHH
Q 042954 42 LRVLLVEADDSTRQIISA--LLRKC---GY---RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISG------FALL 106 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~--lL~~~---gy---eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG------ieLL 106 (720)
.+|.+||=|+.+.+..++ .|... .+ ++. ...|+.+.++. ....||+||+|.-.|...+ -+++
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~---~~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK---LAEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh---CCCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 599999999999999887 34321 11 232 25566655443 2346999999976554322 2577
Q ss_pred HHHHhcc
Q 042954 107 TLVMEHD 113 (720)
Q Consensus 107 ~~Ir~~~ 113 (720)
+.+++.-
T Consensus 399 ~~~~~~L 405 (521)
T PRK03612 399 RLLKRRL 405 (521)
T ss_pred HHHHHhc
Confidence 7777654
No 374
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.73 E-value=2.5e+02 Score=29.43 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred HHHHHHHhccCCCCCeEEEEecc-----CCHHHHHHHHHcCCcEEEeCC--CC-HHHHHHHHHHHHh
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLH-----DSISMVLKCMLKGAADFLIKP--VR-RNELRNLWQHVWR 162 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~-----~d~e~~~~Al~~GA~dYL~KP--~~-~~eL~~~l~~vlr 162 (720)
++++.+|+. .++|+++|+-. .-...+..+.+.|++.++... ++ .+++...++.+.+
T Consensus 64 ~~v~~vr~~---~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~ 127 (244)
T PRK13125 64 PLLEEVRKD---VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKN 127 (244)
T ss_pred HHHHHHhcc---CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHH
Confidence 467777743 46898877522 223346778899999999973 33 4566655555433
No 375
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=34.50 E-value=1.6e+02 Score=29.49 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=56.0
Q ss_pred CccEEEEEecC------------------HHHHHHHHHHHHhC----CCEEEEECCHHHHHHHHHc--CCCCceEEEEec
Q 042954 40 MVLRVLLVEAD------------------DSTRQIISALLRKC----GYRVAAVPDGLAAWETLKC--RPHSIDLVLTEV 95 (720)
Q Consensus 40 m~~rVLIVDDd------------------~~~r~~L~~lL~~~----gyeV~~A~sg~eAle~L~~--~~~~pDLVLlDv 95 (720)
|+++|||||-- +..|..|-..|... ||++..+-|+.---- +.. ..+.+.+|+++.
T Consensus 1 ~~~~iLLVDGYNmIgaWp~Lk~lkd~~~LE~AR~~LIe~l~~Y~s~~g~~iivVFDA~~v~g-~~~~~~~~~vsvvyT~~ 79 (173)
T COG3688 1 MKMRILLVDGYNMIGAWPELKQLKDRNGLEAARDKLIEALAEYQSFTGYKIIVVFDAHYVPG-VGREYKNHRVSVVYTKE 79 (173)
T ss_pred CCceEEEeccchhccccHHHHHHHhhccHHHHHHHHHHHHHHhhcccCceEEEEEEcccccc-ccccccccceEEEEecC
Confidence 56789999843 23344444444432 566665444332111 111 124577788775
Q ss_pred cCCCCCHHHHHHHHHhccCCCCC-eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 96 ELPSISGFALLTLVMEHDVCKNI-PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 96 ~MP~~dGieLL~~Ir~~~~~p~i-pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
+...-++++++-.......+ .|+|.|+.-.. -...+..||.. .+..||..-|+..
T Consensus 80 ---~ETADs~IEr~~~el~~~~t~~V~VaTSD~~E--Q~~Ifg~GA~r-----~Sarel~~ev~~~ 135 (173)
T COG3688 80 ---GETADSFIERYVAELRNAATHQVIVATSDRAE--QWTIFGQGALR-----MSARELYQEVETI 135 (173)
T ss_pred ---CccHHHHHHHHHHHHhccccceEEEEeCchhh--hhhhhccchHH-----HhHHHHHHHHHHH
Confidence 44555666666544433345 67777764322 23345666642 3444555444443
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.39 E-value=4e+02 Score=29.29 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=49.0
Q ss_pred CccEEEEEecCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEecc--CCCCC-HHHHH
Q 042954 40 MVLRVLLVEADDSTR---QIISALLRKCGYRVAAVP---DG----LAAWETLKCRPHSIDLVLTEVE--LPSIS-GFALL 106 (720)
Q Consensus 40 m~~rVLIVDDd~~~r---~~L~~lL~~~gyeV~~A~---sg----~eAle~L~~~~~~pDLVLlDv~--MP~~d-GieLL 106 (720)
...+|+|++-|..-. +.+...-...+..+.... +. .+++..... ..+|+||+|.- ++..+ -++-+
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTaGr~~~~~~l~~eL 218 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTAGRLHNKTNLMEEL 218 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCCCCCcCCHHHHHHH
Confidence 346999999876322 223333444455555432 22 233433333 45999999983 44222 23344
Q ss_pred HHHHhc-----cCCCCCeEEEEeccCCHHHHHHHH
Q 042954 107 TLVMEH-----DVCKNIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 107 ~~Ir~~-----~~~p~ipVIvLTs~~d~e~~~~Al 136 (720)
+.+... ...|.-.++++.+....+.+.++.
T Consensus 219 ~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~ 253 (318)
T PRK10416 219 KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAK 253 (318)
T ss_pred HHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHH
Confidence 444321 112455577777766555444443
No 377
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.34 E-value=17 Score=44.41 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHhc----CCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 228 SAYMQNMQGLSQLKCRSAS----NTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~----gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
-.|+.|+-.-...++.... -+....+...+.-+.|++|+++|||||.-
T Consensus 448 DeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elLylAaLfHDIaKGR 499 (867)
T COG2844 448 DEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELLYLAALFHDIAKGR 499 (867)
T ss_pred hHHHHHHHHHHHHhhcccccccCccHHhhccCCCChhHHHHHHHHHHhhcCC
Confidence 4566666555555542221 01111122233447899999999999973
No 378
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=34.24 E-value=2.9e+02 Score=30.91 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=53.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH--HHHHHHHHhccCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISG--FALLTLVMEHDVCKN 117 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG--ieLL~~Ir~~~~~p~ 117 (720)
.+|+-||-++...+..++-++..+. .+.. +.+..+.+... . ..||+||+| |.-.| -++++.|.... +.
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-~--~~~D~vi~D---PPr~G~~~~~l~~l~~~~--p~ 327 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-M--SAPELVLVN---PPRRGIGKELCDYLSQMA--PK 327 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc-C--CCCCEEEEC---CCCCCCcHHHHHHHHhcC--CC
Confidence 5899999999999998888877765 3333 55665554322 1 249999999 43344 47778786543 32
Q ss_pred CeEEEEeccCCHHHHHHHHHc
Q 042954 118 IPVIMMSLHDSISMVLKCMLK 138 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~ 138 (720)
.||.++ ..-...+.++-..
T Consensus 328 -~ivyvs-c~p~TlaRDl~~L 346 (374)
T TIGR02085 328 -FILYSS-CNAQTMAKDIAEL 346 (374)
T ss_pred -eEEEEE-eCHHHHHHHHHHh
Confidence 344444 4434444444333
No 379
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=34.17 E-value=1.4e+02 Score=34.69 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=47.3
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+..+-++.|.. ...|+|++|..-... .-++++++||... +++|||+ -.-.+.+.+..++++||+..-
T Consensus 225 ~~~~ra~~Lv~--aGVd~i~~D~a~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLD--AGVDVLVIDTAHGHQVKMISAIKAVRALD--LGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHH--hCCCEEEEeCCCCCcHHHHHHHHHHHHHC--CCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 44444444444 348999999987533 3468899999865 7888886 325678888999999997654
No 380
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.06 E-value=2.1e+02 Score=33.72 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=28.0
Q ss_pred ccCCchhhhhhhhhhH-HHHhhhhhccCCCCcchhhhhh
Q 042954 192 SSHSSDYAASSQKNKG-SEKVSDAQSSRTSSPYLEAESA 229 (720)
Q Consensus 192 s~~~~~~~~~~~~~ke-i~~ls~arS~~T~~~~v~~~g~ 229 (720)
.+..+...+..++.|+ +++..+..+.+...||+.++..
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~ 272 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCG 272 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccc
Confidence 3445666788888888 8888887776665788877755
No 381
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=34.04 E-value=5.5e+02 Score=28.78 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCCCEEEEECCH-----------------HHHHHHHHcCCCCceEEEEeccC------CCCCHHHHHHHH
Q 042954 53 TRQIISALLRKCGYRVAAVPDG-----------------LAAWETLKCRPHSIDLVLTEVEL------PSISGFALLTLV 109 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg-----------------~eAle~L~~~~~~pDLVLlDv~M------P~~dGieLL~~I 109 (720)
+.+.|..+ ++.||.+..+++. ..+...++.....++-|++.... ....--+++..+
T Consensus 35 V~e~L~~L-k~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a 113 (354)
T PRK05446 35 VIPALLKL-QKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTGLVEEY 113 (354)
T ss_pred HHHHHHHH-HhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHHHHHHH
Confidence 44444443 5668998888872 22344454433335555443211 122223444444
Q ss_pred HhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHH
Q 042954 110 MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQ 158 (720)
Q Consensus 110 r~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~ 158 (720)
.+......-.++|+- +....+.-|.++|+.-.++.| ++.+++...+-
T Consensus 114 ~~~l~v~~~~svmIG--Ds~sDi~aAk~aGi~~I~v~~~~~~~~~i~~~l~ 162 (354)
T PRK05446 114 LAEGAIDLANSYVIG--DRETDVQLAENMGIKGIRYARETLNWDAIAEQLT 162 (354)
T ss_pred HHHcCCCcccEEEEc--CCHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHh
Confidence 333222223455553 346778889999998888876 77776665544
No 382
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=34.03 E-value=3.4e+02 Score=26.97 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=38.0
Q ss_pred CHHHHHHHHHhccCCCCCeE-EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 101 SGFALLTLVMEHDVCKNIPV-IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipV-IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
-|++++++|++. ...++ +.+..+.....+..+.+.||+..+......++....++.
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 588999999964 34565 324444556777788899999988877655555544443
No 383
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=33.97 E-value=4.1e+02 Score=26.90 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=55.3
Q ss_pred cCHHHHHHHHHHHHhCCCEEEE-E---C----CHHHHHHHHHcCCCCceEEEEeccC----C-CCCHHHHHHHHHhccCC
Q 042954 49 ADDSTRQIISALLRKCGYRVAA-V---P----DGLAAWETLKCRPHSIDLVLTEVEL----P-SISGFALLTLVMEHDVC 115 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~gyeV~~-A---~----sg~eAle~L~~~~~~pDLVLlDv~M----P-~~dGieLL~~Ir~~~~~ 115 (720)
+...+.+.++.+-+..++.|.. . . +..+.++.+.. ..+|.|.+.-.. + +.-.++.++.|++.
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~--~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~--- 181 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALED--AGASALTVHGRTREQRYSGPADWDYIAEIKEA--- 181 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHH--hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC---
Confidence 4445666666665555532222 1 1 22333444544 347777654431 2 22357888888875
Q ss_pred CCCeEEEEeccCCHHHHHHHHHc-CCcEEE
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLK-GAADFL 144 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~-GA~dYL 144 (720)
.++|||.--+-.+.+.+.+++.. ||+...
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 47899998888889999999988 676543
No 384
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.88 E-value=2.3e+02 Score=29.34 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=43.9
Q ss_pred HHHHHcCCCCce-EEEEecc----CCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc-CCcEEEe
Q 042954 78 WETLKCRPHSID-LVLTEVE----LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK-GAADFLI 145 (720)
Q Consensus 78 le~L~~~~~~pD-LVLlDv~----MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~-GA~dYL~ 145 (720)
.+.+.. ..+| |++.++. +++ -.+++++++++. ..+|||+--+..+.+.+.++++. |++..+.
T Consensus 155 ~~~l~~--~G~d~i~v~~i~~~g~~~g-~~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 155 AKEVEE--LGAGEILLTSMDRDGTKKG-YDLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHH--CCCCEEEEeccCCCCCCCC-CCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 344444 3477 5665543 222 247888998875 37899999989999999999987 8887765
No 385
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.86 E-value=2.8e+02 Score=27.95 Aligned_cols=92 Identities=14% Similarity=0.048 Sum_probs=57.4
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHH
Q 042954 59 ALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCML 137 (720)
Q Consensus 59 ~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~ 137 (720)
+.|...+ +-|....+.+++++.++.- ..--+=++.+++-..+..++++.+++.. +.+.+=.-| --..+.+..|++
T Consensus 7 ~~l~~~~~~~v~r~~~~~~~~~~~~~~-~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gt-vl~~d~~~~A~~ 82 (187)
T PRK07455 7 AQLQQHRAIAVIRAPDLELGLQMAEAV-AAGGMRLIEITWNSDQPAELISQLREKL--PECIIGTGT-ILTLEDLEEAIA 82 (187)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHH-HHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEE-EEcHHHHHHHHH
Confidence 3444444 4566688888888776531 1123556777788888999999998765 333111111 112367788999
Q ss_pred cCCcEEEeCCCCHHHHH
Q 042954 138 KGAADFLIKPVRRNELR 154 (720)
Q Consensus 138 ~GA~dYL~KP~~~~eL~ 154 (720)
.||+..+.--++.+.+.
T Consensus 83 ~gAdgv~~p~~~~~~~~ 99 (187)
T PRK07455 83 AGAQFCFTPHVDPELIE 99 (187)
T ss_pred cCCCEEECCCCCHHHHH
Confidence 99987666556655443
No 386
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=33.83 E-value=2.1e+02 Score=30.00 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEE---EeccCCCCCHHHHHHHHHhccC--CCCCeEEEEeccCCHHHH
Q 042954 60 LLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVL---TEVELPSISGFALLTLVMEHDV--CKNIPVIMMSLHDSISMV 132 (720)
Q Consensus 60 lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVL---lDv~MP~~dGieLL~~Ir~~~~--~p~ipVIvLTs~~d~e~~ 132 (720)
.|...|+. ++.+.+..+|+...+.+ .+.|= --+.--+.||.++++.|..... ...+ -|+..+..+...+
T Consensus 100 ~L~~~Gi~vn~T~ifs~~Qa~~Aa~aG---a~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~t-kILaAS~r~~~~v 175 (222)
T PRK12656 100 TLKAEGYHITATAIYTVFQGLLAIEAG---ADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDS-KILAASFKNVAQV 175 (222)
T ss_pred HHHHCCCceEEeeeCCHHHHHHHHHCC---CCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCC-EEEEEecCCHHHH
Confidence 45666754 45588889988777643 23221 1222236799988887655431 1344 5556777889999
Q ss_pred HHHHHcCCcEEEeCC
Q 042954 133 LKCMLKGAADFLIKP 147 (720)
Q Consensus 133 ~~Al~~GA~dYL~KP 147 (720)
.+|...|++-.-.-|
T Consensus 176 ~~a~~~G~d~vTvp~ 190 (222)
T PRK12656 176 NKAFALGAQAVTAGP 190 (222)
T ss_pred HHHHHcCCCEEecCH
Confidence 999999988654433
No 387
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.75 E-value=6.4e+02 Score=27.46 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=59.0
Q ss_pred EEEEEecCHHHH--H--HHHHHH----HhCCC--EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 43 RVLLVEADDSTR--Q--IISALL----RKCGY--RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 43 rVLIVDDd~~~r--~--~L~~lL----~~~gy--eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
.|||-|.+-... - .+...+ +..++ .|. .+.+.+++.+.+.. .+|+|++|=.-|. +=-+.+..++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e-~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD-DLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH-HHHHHHHHhC-
Confidence 688888886643 1 244444 33343 344 49999999998863 4899999953332 2223333332
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEE
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADF 143 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY 143 (720)
...+|-.++.-..+.+.+-...|++-.
T Consensus 236 -----~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 -----GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred -----CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 234788899999999988888887643
No 388
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=33.62 E-value=4.7e+02 Score=27.59 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 55 QIISALLRKCGYRVAAV-------PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~A-------~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
..+++.++..|.++... .+....+..+... .+|+||+-.. +...+.+++.+++.. ..++++.++.
T Consensus 154 ~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~--~~dav~~~~~--~~~a~~~i~~~~~~G--~~~~~~~~~~ 225 (336)
T cd06326 154 AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAA--RPQAVIMVGA--YKAAAAFIRALRKAG--GGAQFYNLSF 225 (336)
T ss_pred HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhc--CCCEEEEEcC--cHHHHHHHHHHHhcC--CCCcEEEEec
Confidence 34455555555443221 2444444444432 3666666432 124556666666554 3455554443
No 389
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=33.46 E-value=33 Score=37.92 Aligned_cols=51 Identities=2% Similarity=-0.174 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhc---CCCcc--chhhhHHHHHHhhhhcCCCccccc
Q 042954 225 EAESAYMQNMQGLSQLKCRSAS---NTCST--DMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~---gl~~~--~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
.....|...|+.|+-.+++... +.+.+ ..++..|...++.||++|||||+.
T Consensus 65 GGll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l 120 (327)
T PF07514_consen 65 GGLLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPL 120 (327)
T ss_pred CcHHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCcce
Confidence 3445677778888887765431 11111 112566777999999999999964
No 390
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=33.27 E-value=1.6e+02 Score=33.21 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=66.2
Q ss_pred EEEecCHHHHHHHHHHHHhCCC-----EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 45 LLVEADDSTRQIISALLRKCGY-----RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 45 LIVDDd~~~r~~L~~lL~~~gy-----eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
..|+|...+...+.+.|++++. -.+.+-+. +-|+.++. ...+++++++++.. .|.
T Consensus 87 ~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~----------------~g~~df~~kak~eG---kIr 146 (391)
T COG1453 87 WPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIER----------------LGVFDFLEKAKAEG---KIR 146 (391)
T ss_pred ccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHc----------------cChHHHHHHHHhcC---cEE
Confidence 3688999999999999999863 23334444 88888754 12689999999875 688
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.+=+|.|+..+.+.+++.++-.||+.=-
T Consensus 147 ~~GFSfHgs~e~~~~iv~a~~~dfvqlq 174 (391)
T COG1453 147 NAGFSFHGSTEVFKEIVDAYPWDFVQLQ 174 (391)
T ss_pred EeeecCCCCHHHHHHHHhcCCcceEEee
Confidence 8889999999999999999999997654
No 391
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=33.23 E-value=1.8e+02 Score=31.96 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=40.8
Q ss_pred CceEEEEeccCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 87 SIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 87 ~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+|+|.+|..-.. ..-++++++|++.. |+++||+ ..-.+.+.+..++++||+...+
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 4899999985432 23468899998865 5677765 4446678889999999987664
No 392
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=33.20 E-value=4.4e+02 Score=28.25 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=46.9
Q ss_pred cEEEEEecCHH----HHHHHHHHHHh--CCCEEEE-------E-CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHH
Q 042954 42 LRVLLVEADDS----TRQIISALLRK--CGYRVAA-------V-PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLT 107 (720)
Q Consensus 42 ~rVLIVDDd~~----~r~~L~~lL~~--~gyeV~~-------A-~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~ 107 (720)
.+|.||.++.. ..+.++..|++ .|.+|+. . .+....+..++. ..+|+|++...-+ ++..+++
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~--~~~d~v~~~~~~~--~~~~~~~ 219 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKA--SGADTVITGNWGN--DLLLLVK 219 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHH--cCCCEEEEcccCc--hHHHHHH
Confidence 35555554332 45567777777 7776653 1 344455666655 3489888866433 5778888
Q ss_pred HHHhccCCCCCeEEEEe
Q 042954 108 LVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 108 ~Ir~~~~~p~ipVIvLT 124 (720)
.+++.. .+.+++..+
T Consensus 220 ~~~~~g--~~~~~~~~~ 234 (342)
T cd06329 220 QAADAG--LKLPFYTPY 234 (342)
T ss_pred HHHHcC--CCceEEecc
Confidence 888775 345655443
No 393
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=33.12 E-value=5.5e+02 Score=29.01 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=52.6
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHH-HHhccCCCCCe
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYR-V-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTL-VMEHDVCKNIP 119 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gye-V-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~-Ir~~~~~p~ip 119 (720)
+|+.+|-++...+.++.-++..+.. + +...|..+.+.. . ..||+|++|. | ..+.+++.. |+... .-.
T Consensus 83 ~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~-Gs~~~~l~~al~~~~---~~g 152 (382)
T PRK04338 83 KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--F-GSPAPFLDSAIRSVK---RGG 152 (382)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--C-CCcHHHHHHHHHHhc---CCC
Confidence 7999999999999999988776653 2 334455444322 2 3599999996 4 445677777 65543 346
Q ss_pred EEEEeccCCH
Q 042954 120 VIMMSLHDSI 129 (720)
Q Consensus 120 VIvLTs~~d~ 129 (720)
+|.+|+.+-.
T Consensus 153 ilyvSAtD~~ 162 (382)
T PRK04338 153 LLCVTATDTA 162 (382)
T ss_pred EEEEEecCch
Confidence 8888866543
No 394
>PRK04457 spermidine synthase; Provisional
Probab=32.84 E-value=3.9e+02 Score=28.35 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=45.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC--CEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCC-C----CCHHHHHHHHHhcc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG--YRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELP-S----ISGFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP-~----~dGieLL~~Ir~~~ 113 (720)
.+|..||=++.+.+..++.+...+ -.+.. ..|+.+.+... ...||+||+|..-. . ..-.++++.+++.-
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L 167 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNAL 167 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhc
Confidence 589999999999999888875432 23332 56777665532 24699999996321 1 12357777777654
No 395
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=32.70 E-value=2.1e+02 Score=30.16 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=59.9
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH-HHHHHHHhccCCCCCeEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF-ALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi-eLL~~Ir~~~~~p~ipVI 121 (720)
.|||----.-+-..|..-|...|-+|+.|.--++.|+..+.....+--+++|+ .+.+++ +++.+|++.+ |.+-||
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv--~d~~~~~~lvewLkk~~--P~lNvl 82 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDV--ADRDSRRELVEWLKKEY--PNLNVL 82 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecc--cchhhHHHHHHHHHhhC--Cchhee
Confidence 68888888888888888888889999999999999888876442334456666 455555 7999999887 887777
Q ss_pred EEe
Q 042954 122 MMS 124 (720)
Q Consensus 122 vLT 124 (720)
|=-
T Consensus 83 iNN 85 (245)
T COG3967 83 INN 85 (245)
T ss_pred eec
Confidence 643
No 396
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=32.66 E-value=2e+02 Score=32.00 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHH
Q 042954 51 DSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSIS 130 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e 130 (720)
......|.+.-++.|..+.+..-..++++.|.. +++-+.=+--.++.-+.||+.+.+. ..|||+=|+..+.+
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~----~~v~~~KIaS~~~~n~pLL~~~A~~----gkPvilStGmatl~ 146 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLESADFLED----LGVPRFKIPSGEITNAPLLKKIARF----GKPVILSTGMATLE 146 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh----cCCCEEEECcccccCHHHHHHHHhc----CCcEEEECCCCCHH
Confidence 344556677777778888886667778888864 3444555555677779999999875 47999999998887
Q ss_pred HHHHHH
Q 042954 131 MVLKCM 136 (720)
Q Consensus 131 ~~~~Al 136 (720)
.+..|+
T Consensus 147 Ei~~Av 152 (329)
T TIGR03569 147 EIEAAV 152 (329)
T ss_pred HHHHHH
Confidence 776655
No 397
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=32.65 E-value=3e+02 Score=31.33 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred ecCHHHHHHHHHHHHhCCCE----EEEE-----------------------CCHHHHHHHHHcCCCCceEEEEeccCCCC
Q 042954 48 EADDSTRQIISALLRKCGYR----VAAV-----------------------PDGLAAWETLKCRPHSIDLVLTEVELPSI 100 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~gye----V~~A-----------------------~sg~eAle~L~~~~~~pDLVLlDv~MP~~ 100 (720)
+++....+.+++.++..||+ |..+ -+..+|++++..--..++|+.++==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777788888888877653 2222 24478877665421237888887656544
Q ss_pred CHHHHHHHHHhccCCCCCeEEEEecc---CCHHHHHHHHHcCC-cEEEeCCCCHHHHH
Q 042954 101 SGFALLTLVMEHDVCKNIPVIMMSLH---DSISMVLKCMLKGA-ADFLIKPVRRNELR 154 (720)
Q Consensus 101 dGieLL~~Ir~~~~~p~ipVIvLTs~---~d~e~~~~Al~~GA-~dYL~KP~~~~eL~ 154 (720)
| ++-.++|++.. ...+|| +... .+...+.++++.|+ +-+++||...--|.
T Consensus 290 D-~eg~~~L~~~~-g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGit 343 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLT 343 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH
Confidence 4 55566676542 013444 4443 35788888998885 66677886643333
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.52 E-value=2.9e+02 Score=31.20 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=50.5
Q ss_pred cEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEecc-CCCCCH--HHHHHHHHhccCC
Q 042954 42 LRVLLVEADDS---TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE-LPSISG--FALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~~---~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~-MP~~dG--ieLL~~Ir~~~~~ 115 (720)
.+|.+|..|.. -.+.|+.+-+..|..+..+.++.+....+... ..+|+||+|.- +...+. .+.+..|.... .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-T 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccC-C
Confidence 47888887765 33445555556677777766655544444322 34899999983 333332 24444443322 1
Q ss_pred CCCeEEEEeccCCHHHHH
Q 042954 116 KNIPVIMMSLHDSISMVL 133 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~ 133 (720)
+.-.++||++....+.+.
T Consensus 246 ~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 246 PVQRLLLLNATSHGDTLN 263 (374)
T ss_pred CCeEEEEecCccChHHHH
Confidence 233477777766554433
No 399
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.42 E-value=1.4e+02 Score=37.35 Aligned_cols=75 Identities=13% Similarity=0.285 Sum_probs=51.3
Q ss_pred CCceEEEEe-ccCCCCCHHH-HHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 86 HSIDLVLTE-VELPSISGFA-LLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 86 ~~pDLVLlD-v~MP~~dGie-LL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
..+-|||+| ..|-...++. ||+.|.+-. ..+.+||+|.. .+.+...|+.-..-|-.+++..++|...|..+++.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP--~~~~fIl~tt~--~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPP--EHLKFIFATTE--PDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCC--CCeEEEEEeCC--hhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 357888887 5555556664 444554433 56777777743 34567777766778888899999999998887754
Q ss_pred c
Q 042954 164 H 164 (720)
Q Consensus 164 ~ 164 (720)
.
T Consensus 195 E 195 (824)
T PRK07764 195 E 195 (824)
T ss_pred c
Confidence 4
No 400
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=32.28 E-value=3.2e+02 Score=30.20 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
...|..++. ..+++||+|..- .+...+++++++..-.+.--..+++..
T Consensus 166 ~~~L~~ik~--~~~~~Iil~~~~--~~~~~il~qa~~~gm~~~~y~~il~~~ 213 (370)
T cd06389 166 RSLFQDLEN--KKERRVILDCER--DKVNDIVDQVITIGKHVKGYHYIIANL 213 (370)
T ss_pred HHHHHHhcc--ccceEEEEECCH--HHHHHHHHHHHHhCccccceEEEEccC
Confidence 334444443 458888888753 346778888877763322223344544
No 401
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=32.27 E-value=4.1e+02 Score=29.93 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=46.0
Q ss_pred ceEEEEeccCCCCCHH-HHHHHHHhccCCCCCeEEEE-eccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 88 IDLVLTEVELPSISGF-ALLTLVMEHDVCKNIPVIMM-SLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 88 pDLVLlDv~MP~~dGi-eLL~~Ir~~~~~p~ipVIvL-Ts~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+.+|++..-+..=-+ -++..+.. ....||.. ....+...++.+++.|+++.+.+|-+..+++.+...+-.
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~----~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQG----SSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 5666665544432222 33444432 23445544 344456778899999999999999999999987776544
No 402
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.20 E-value=3.1e+02 Score=29.66 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=56.4
Q ss_pred EEEEEecCHHHHHHHHHHH----HhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTRQIISALL----RKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL----~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
-|||=|.+-.....+...+ +.. +..|. .+.+.+|+.+.++. .+|+|.+|-. +.+.++++.+... +
T Consensus 162 ~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~tleea~eA~~~---gaD~I~LD~~-----~~e~l~~~v~~~~-~ 232 (277)
T PRK05742 162 AFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESLDELRQALAA---GADIVMLDEL-----SLDDMREAVRLTA-G 232 (277)
T ss_pred cEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCC-----CHHHHHHHHHHhC-C
Confidence 4666665544333333322 222 22333 48899999988863 4899999842 4555665544321 4
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+|++ .++--+.+.+.+....|++.+-+
T Consensus 233 ~i~le-AsGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 233 RAKLE-ASGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred CCcEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 66655 45556788888888999886654
No 403
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=32.19 E-value=2.7e+02 Score=25.69 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=45.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHc-CCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKC-RPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~A~sg~eAle~L~~-~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
||.+|.+|-|-..+.- ++..|++ +..+.+.+++-++++. ....+.||++-=.+-..---++++++++. -
T Consensus 1 m~~kIaVvGd~DtilG-----FrlaGi~~v~~~~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~----~ 71 (104)
T PRK01189 1 MMSCITVIGERDVVLG-----FRLLGIGDTIEAEGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESS----S 71 (104)
T ss_pred CCceEEEEcCHHHHHH-----HHHcCCceEEEcCCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhcc----C
Confidence 5778999998877652 4556885 8888887766444331 12458888875444322222566667633 3
Q ss_pred CeEEE
Q 042954 118 IPVIM 122 (720)
Q Consensus 118 ipVIv 122 (720)
.|.|+
T Consensus 72 ~P~II 76 (104)
T PRK01189 72 KPLVV 76 (104)
T ss_pred CCeEE
Confidence 56666
No 404
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=32.17 E-value=4.7e+02 Score=28.15 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=62.9
Q ss_pred cEEEEEe---cCHHHHHHHHHHHHhCCC---EEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVE---ADDSTRQIISALLRKCGY---RVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVD---Dd~~~r~~L~~lL~~~gy---eV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+++|+- +.+.....++..+...+. .|.. .-+..+..+++.. .|++|+=-.. +.-|+-+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~~-e~~g~~~lEA~a-- 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSIY-EPLGIVNLEAMA-- 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCcc-CCCChHHHHHHH--
Confidence 3555542 234445556665554432 1333 2345666666643 6887764322 334666776664
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCH------HHHHHHHHHHHh
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRR------NELRNLWQHVWR 162 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~------~eL~~~l~~vlr 162 (720)
-.+|||+ |.... ..+.+..|..+|+.++-+. ++|...|..++.
T Consensus 303 ---~G~PvI~-s~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 ---CGTPVVA-SATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred ---cCCCEEE-eCCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 3568875 43333 3455667888999998877 788888877654
No 405
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.16 E-value=1.7e+02 Score=29.25 Aligned_cols=59 Identities=7% Similarity=0.115 Sum_probs=44.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.+.++.+++.. +..+.|.+-. .+.+.+.+|+++|++-.+.--+++++|+.++..++...
T Consensus 67 ~~av~~~~~~~--~~~~~I~VEv-~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~ 125 (169)
T PF01729_consen 67 EEAVKAARQAA--PEKKKIEVEV-ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELN 125 (169)
T ss_dssp HHHHHHHHHHS--TTTSEEEEEE-SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--CCCceEEEEc-CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcC
Confidence 57888888876 5554344433 34778899999999999999999999999999875543
No 406
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=32.14 E-value=3.9e+02 Score=30.27 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=50.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCH--HHHHHHHHhccCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISG--FALLTLVMEHDVCKN 117 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG--ieLL~~Ir~~~~~p~ 117 (720)
.+|+-||-++...+..+.-++..++ .+. ...+..+.+..+......||+||+|. |. .| .++++.|.... +.
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr-~G~~~~~l~~l~~l~--~~ 389 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PR-KGCAAEVLRTIIELK--PE 389 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CC-CCCCHHHHHHHHhcC--CC
Confidence 4899999999999988888877664 233 35666665543321123489999985 32 23 67788877654 33
Q ss_pred CeEEEEec
Q 042954 118 IPVIMMSL 125 (720)
Q Consensus 118 ipVIvLTs 125 (720)
.||.++-
T Consensus 390 -~ivyvsc 396 (431)
T TIGR00479 390 -RIVYVSC 396 (431)
T ss_pred -EEEEEcC
Confidence 4555553
No 407
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=32.05 E-value=1.1e+02 Score=31.85 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCEEEE----ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH-------HHHHHHHhccCCCCCeEEEE
Q 042954 55 QIISALLRKCGYRVAA----VPDGLAAWETLKCRPHSIDLVLTEVELPSISGF-------ALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~----A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi-------eLL~~Ir~~~~~p~ipVIvL 123 (720)
....+.+++.|..+.. ..+.++...+++. ...|+|++=..-||.+|. +-++++++.. +. ..|.+
T Consensus 104 ~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~--~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~--~~-~~I~V 178 (228)
T PTZ00170 104 KAVARKIREAGMKVGVAIKPKTPVEVLFPLIDT--DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY--PH-LNIQV 178 (228)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHcc--chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc--cc-CeEEE
Confidence 3344444555654433 3344444444422 236766532223666664 3344555443 23 35777
Q ss_pred eccCCHHHHHHHHHcCCcEEE-----eCCCCHHHHHHHHHHHHh
Q 042954 124 SLHDSISMVLKCMLKGAADFL-----IKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL-----~KP~~~~eL~~~l~~vlr 162 (720)
.+--..+.+..+.++||+-++ .+.-++.+-...++..++
T Consensus 179 dGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 179 DGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 888888999999999998654 343345555555555443
No 408
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=32.01 E-value=4e+02 Score=28.90 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=63.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEEE---CCHHHHHH-HHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAV---PDGLAAWE-TLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A---~sg~eAle-~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
++++||-+-+. ++.+.++.+..+. .|... .+..+.+. .+. ..|++|+--.. +.-|+-+++.+..
T Consensus 211 ~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~----~~d~~v~~s~~-Egf~~~~lEAma~---- 280 (359)
T PRK09922 211 WQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK----NVSALLLTSKF-EGFPMTLLEAMSY---- 280 (359)
T ss_pred eEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh----cCcEEEECCcc-cCcChHHHHHHHc----
Confidence 56666655443 3444555554432 23332 22222222 222 14666653222 2236777777753
Q ss_pred CCCeEEEEec-cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 116 KNIPVIMMSL-HDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 116 p~ipVIvLTs-~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
.+|||. |. ... ..+.+..|..+++..|.+.++|.++|..++....
T Consensus 281 -G~Pvv~-s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 281 -GIPCIS-SDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred -CCCEEE-eCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCcc
Confidence 468874 43 333 3356677889999999999999999999876553
No 409
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=31.95 E-value=1.4e+02 Score=34.92 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=39.6
Q ss_pred CceEEEEeccCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 87 SIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 87 ~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.+|+|.+|..-.. ..-++++++|++.. ++++|++ -.-.+.+.+..++++||+.+.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~--~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNY--PHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhC--CCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 4899999984221 12368999999875 6666665 344567888999999999664
No 410
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=31.91 E-value=1.3e+02 Score=30.94 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=51.5
Q ss_pred CCEEEEECCHHHHHHHHHcCCCCceEEEEeccC---CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCc
Q 042954 65 GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVEL---PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA 141 (720)
Q Consensus 65 gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~M---P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~ 141 (720)
++.|....+.+++.++++. ..|+|=+|.-. | .+--+|+++||+.. +++|..-+..+....|.++|+
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~~------~l~MADist~ee~~~A~~~G~- 113 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEKY------QLVMADISTLEEAINAAELGF- 113 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHCT------SEEEEE-SSHHHHHHHHHTT--
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHhC------cEEeeecCCHHHHHHHHHcCC-
Confidence 4678889999999998875 37999999844 4 77789999998853 788999999999999999995
Q ss_pred EEEeC
Q 042954 142 DFLIK 146 (720)
Q Consensus 142 dYL~K 146 (720)
||+.-
T Consensus 114 D~I~T 118 (192)
T PF04131_consen 114 DIIGT 118 (192)
T ss_dssp SEEE-
T ss_pred CEEEc
Confidence 46653
No 411
>PLN02366 spermidine synthase
Probab=31.80 E-value=2.9e+02 Score=30.24 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=45.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC---EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCC-----HHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY---RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSIS-----GFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy---eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-----GieLL~~Ir 110 (720)
.+|.+||=|+.+.+..++.+... ++ .|.. ..|+.+.++... ...||+||+|..-|..- ..++++.++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 58999999999888888887542 11 2333 556665554321 24599999998665322 236677776
Q ss_pred hcc
Q 042954 111 EHD 113 (720)
Q Consensus 111 ~~~ 113 (720)
+..
T Consensus 194 ~~L 196 (308)
T PLN02366 194 RAL 196 (308)
T ss_pred Hhc
Confidence 654
No 412
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=31.71 E-value=1.9e+02 Score=32.41 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=46.3
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..+-++.|.+ ...|+|++|..--.. .=++++++||+.. ++++|| .-.-...+.+...++.||+...+-
T Consensus 108 ~~~er~~~L~~--agvD~ivID~a~g~s~~~~~~ik~ik~~~--~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKKF--PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHH--TT-SEEEEE-SSTTSHHHHHHHHHHHHHS--TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHH--cCCCEEEccccCccHHHHHHHHHHHHHhC--CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 34555555554 348999999855332 3468999999887 777777 444567788888999999887664
No 413
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.68 E-value=3.3e+02 Score=29.73 Aligned_cols=104 Identities=17% Similarity=0.316 Sum_probs=56.8
Q ss_pred cEEEEEec--CH---HHHHHHHHHHHhCCCEEEEECCHHHHHH--HH-HcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 42 LRVLLVEA--DD---STRQIISALLRKCGYRVAAVPDGLAAWE--TL-KCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDD--d~---~~r~~L~~lL~~~gyeV~~A~sg~eAle--~L-~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
.+|+||=. .+ .....+...|+..|+++.......+... .+ ......+|+||+= |.|| .+++.++...
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDG-T~l~~~~~~~ 78 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL----GGDG-TVLAAARHLA 78 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE----CCcH-HHHHHHHHhc
Confidence 35777622 22 3344566667778998776443222111 00 1111247888773 6777 3555555442
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCC-HHHHHHHHHHHHhhc
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR-RNELRNLWQHVWRRH 164 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~-~~eL~~~l~~vlr~~ 164 (720)
..++||+.+-. .|-.+||.-... ..+ ...|+.++++.
T Consensus 79 -~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g~ 116 (305)
T PRK02645 79 -PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQEDR 116 (305)
T ss_pred -cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcCC
Confidence 25788887764 245688885421 223 66777776654
No 414
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=31.66 E-value=5e+02 Score=28.93 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=52.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHcC------------CCCceEEEEeccCCCCCH--HHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVA-AVPDGLAAWETLKCR------------PHSIDLVLTEVELPSISG--FAL 105 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~-~A~sg~eAle~L~~~------------~~~pDLVLlDv~MP~~dG--ieL 105 (720)
.+|+.||-++...+.+++-+...+. .+. ...+..+.+..+... ...||+||+|- | -.| -++
T Consensus 229 ~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~ 305 (362)
T PRK05031 229 RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDET 305 (362)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHH
Confidence 4899999999999988888877665 343 367777776654211 12489999995 3 344 477
Q ss_pred HHHHHhccCCCCCeEEEEeccC
Q 042954 106 LTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 106 L~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
++.|.+ . -.||.++-..
T Consensus 306 l~~l~~-~----~~ivyvSC~p 322 (362)
T PRK05031 306 LKLVQA-Y----ERILYISCNP 322 (362)
T ss_pred HHHHHc-c----CCEEEEEeCH
Confidence 788865 2 2466666544
No 415
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.64 E-value=5.1e+02 Score=28.09 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=14.0
Q ss_pred cEEEeCCCCHHHHHHHHHHHHh
Q 042954 141 ADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 141 ~dYL~KP~~~~eL~~~l~~vlr 162 (720)
..|+.+..+.++|...|..++.
T Consensus 319 ~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 319 PELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred hhhcCCCCCHHHHHHHHHHHhc
Confidence 4456666677777766666654
No 416
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=31.63 E-value=2.8e+02 Score=29.95 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++.+.++++... +++|||...+-.+.+.+.+++.+||+...+
T Consensus 239 l~~v~~~~~~~~-~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPE-PGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcC-CCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 678888877531 479999999999999999999999976543
No 417
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.48 E-value=4.3e+02 Score=27.54 Aligned_cols=69 Identities=7% Similarity=0.116 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHcCCCCce-EEEEecc-C-CCC-CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 72 PDGLAAWETLKCRPHSID-LVLTEVE-L-PSI-SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pD-LVLlDv~-M-P~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.++.+..+.+.. . ++ |+++|+. + .+. .-++++++|.+. ..+||++=-+-.+.+.+.+++..|++..++-
T Consensus 30 ~dp~~~a~~~~~--~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSE--Y-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHH--h-CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 477777777654 3 44 7778885 3 232 357889998765 4689998888889999999999999987764
No 418
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.41 E-value=2e+02 Score=30.07 Aligned_cols=66 Identities=20% Similarity=0.108 Sum_probs=47.7
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+..++++.++.. --.+|++|+.--++ .|++ .+.+.. +++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d---~l~~~~--~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNY--VNRFIYTSIERDGTLTGIE---EIERFW--GDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHH--hCEEEEEeccchhcccCHH---HHHHhc--CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 455666666543 23689999976553 6766 333322 468999999999999999999999988765
No 419
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.27 E-value=2.3e+02 Score=33.79 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred CccEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-H-H-----cCCCCceEEEEeccCCCCCHHHHHH
Q 042954 40 MVLRVLLVE--ADDSTR---QIISALLRKCGYRVAAVPDGLAAWET-L-K-----CRPHSIDLVLTEVELPSISGFALLT 107 (720)
Q Consensus 40 m~~rVLIVD--Dd~~~r---~~L~~lL~~~gyeV~~A~sg~eAle~-L-~-----~~~~~pDLVLlDv~MP~~dGieLL~ 107 (720)
..++|+||- +.+... ..+...|+..|++|.........+.. + . .....+|+||+ -|.|| .+|+
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T~L~ 363 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDG-TVLR 363 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcH-HHHH
Confidence 345788883 333333 34555666678887775433222210 0 0 00012566555 27787 5677
Q ss_pred HHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 108 LVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 108 ~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
..+... ...+||+-+ +.|=.+||. .++.+++...|..++++.-
T Consensus 364 aa~~~~-~~~~PilGi-------------n~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 364 ASKLVN-GEEIPIICI-------------NMGTVGFLT-EFSKEEIFKAIDSIISGEY 406 (569)
T ss_pred HHHHhc-CCCCCEEEE-------------cCCCCCcCc-ccCHHHHHHHHHHHHcCCc
Confidence 776653 247888854 346688988 6889999999999988764
No 420
>PLN02316 synthase/transferase
Probab=31.24 E-value=5e+02 Score=33.44 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=44.6
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCH-HHHHHH---------HHcCCcEEEeCCCCHHHHHHHH
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSI-SMVLKC---------MLKGAADFLIKPVRRNELRNLW 157 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~-e~~~~A---------l~~GA~dYL~KP~~~~eL~~~l 157 (720)
.|++|+=- +-..-|+-.|..++. .+|+|+ +.-... +.+... ...|..+|+..|.+...|..+|
T Consensus 920 ADiflmPS-~~EP~GLvqLEAMa~-----GtppVv-s~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 920 ADFILVPS-IFEPCGLTQLTAMRY-----GSIPVV-RKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred CcEEEeCC-cccCccHHHHHHHHc-----CCCeEE-EcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 67776643 234557877877764 345554 333333 333221 0125789999999999999999
Q ss_pred HHHHhhc
Q 042954 158 QHVWRRH 164 (720)
Q Consensus 158 ~~vlr~~ 164 (720)
.+++..+
T Consensus 993 ~raL~~~ 999 (1036)
T PLN02316 993 NRAISAW 999 (1036)
T ss_pred HHHHhhh
Confidence 9987753
No 421
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=31.16 E-value=2.1e+02 Score=29.86 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEE---eccCCCCCHHHHHHHHHhccCC--CCCeEEEEeccCCHHHH
Q 042954 60 LLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVLT---EVELPSISGFALLTLVMEHDVC--KNIPVIMMSLHDSISMV 132 (720)
Q Consensus 60 lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVLl---Dv~MP~~dGieLL~~Ir~~~~~--p~ipVIvLTs~~d~e~~ 132 (720)
.|...|.. ++.+.+..+|+-..... .+.|=- -+.--+.||+++++.+++.... ..+ -|+..+..+...+
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~aG---a~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~t-kILaAS~r~~~~v 173 (220)
T PRK12653 98 MLKAEGIPTLGTAVYGAAQGLLSALAG---AEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQA-KVLAASFKTPRQA 173 (220)
T ss_pred HHHHcCCCeeEEEecCHHHHHHHHhcC---CcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCc-EEEEEecCCHHHH
Confidence 46666754 45588999987666542 333221 1112367999999988776532 233 4556666778888
Q ss_pred HHHHHcCCcEEEeC
Q 042954 133 LKCMLKGAADFLIK 146 (720)
Q Consensus 133 ~~Al~~GA~dYL~K 146 (720)
.+++..|++-+-.-
T Consensus 174 ~~~~~~G~d~vTip 187 (220)
T PRK12653 174 LDCLLAGCESITLP 187 (220)
T ss_pred HHHHHcCCCEEECC
Confidence 89999998865443
No 422
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.95 E-value=3.6e+02 Score=29.61 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++++++||+.- ++|||+.....+.+.+.++++.|..|++.
T Consensus 281 ~~~~~~ik~~v---~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVT---KTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 57788888763 68999998888999999999999877753
No 423
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.94 E-value=2.1e+02 Score=27.69 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHcCCCCceEEEEeccCCC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVP----DGLAAWETLKCRPHSIDLVLTEVELPS 99 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~----sg~eAle~L~~~~~~pDLVLlDv~MP~ 99 (720)
....+|+|+.....+.+-|..+|.+.|..|..+. +..++ ++ ..|||++-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 3456999999999999999999999999999987 44443 32 2799999987764
No 424
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.86 E-value=1.8e+02 Score=30.34 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCCCCH-------HHHHHHHHhccC--CCCCeEEEEe
Q 042954 57 ISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPSISG-------FALLTLVMEHDV--CKNIPVIMMS 124 (720)
Q Consensus 57 L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~--~p~ipVIvLT 124 (720)
+-..+++.|..+..+- +..+.++.+. ...|+|++=-.-|+..| ++-++++++... ..+++|.+.
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd- 173 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID- 173 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE-
Confidence 3345566676654433 3344444332 23787777555676555 455666655431 124666654
Q ss_pred ccCCHHHHHHHHHcCCcEEEeC
Q 042954 125 LHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 125 s~~d~e~~~~Al~~GA~dYL~K 146 (720)
+--+.+.+.++.++||+.++.=
T Consensus 174 GGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 174 GGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCCCHHHHHHHHHcCCCEEEEe
Confidence 4455888999999999988654
No 425
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=30.62 E-value=1.3e+02 Score=30.53 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=43.0
Q ss_pred EEEEEecC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHcCCCCceEEEEeccCCC-CCHHHHHHHHH
Q 042954 43 RVLLVEAD---------DSTRQIISALLR-KCGYRVAAVPDGLAAW-ETLKCRPHSIDLVLTEVELPS-ISGFALLTLVM 110 (720)
Q Consensus 43 rVLIVDDd---------~~~r~~L~~lL~-~~gyeV~~A~sg~eAl-e~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir 110 (720)
||||+.-. +.....|..+|+ ..+|+|+...+....- +.| ..+||||+.....+ ++. +-.+.|+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 67777765 257788999998 6689999877744321 234 34999999887753 332 2222222
Q ss_pred hccCCCCCeEEEEe
Q 042954 111 EHDVCKNIPVIMMS 124 (720)
Q Consensus 111 ~~~~~p~ipVIvLT 124 (720)
+.-. ...++|++=
T Consensus 76 ~~v~-~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVE-NGGGLVGLH 88 (217)
T ss_dssp HHHH-TT-EEEEEG
T ss_pred HHHH-cCCCEEEEc
Confidence 2111 346777774
No 426
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=30.36 E-value=4.5e+02 Score=30.26 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=64.2
Q ss_pred ccEEEEEec---CH-HHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCC------------CC
Q 042954 41 VLRVLLVEA---DD-STRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPS------------IS 101 (720)
Q Consensus 41 ~~rVLIVDD---d~-~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~------------~d 101 (720)
...++.||- +. .+.+.++.+=+.+ ...|.. +.+.++|..++.. .+|.|.+-+. |+ ..
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGVP 311 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCcc
Confidence 468888887 43 3344444443332 334333 7888888888764 3788754321 11 11
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
-+.++..+.+......+|||.--+-.....+.+|+.+||+..+.--
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 2344444433221246899888888999999999999999887654
No 427
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.36 E-value=4.3e+02 Score=30.97 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=60.6
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCC-------CHHHHHHHHHhccCCCCCeEE
Q 042954 49 ADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSI-------SGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-------dGieLL~~Ir~~~~~p~ipVI 121 (720)
=+..--+.+...|...||+++... ...||||+..----. +-+..++.+++.. |.++||
T Consensus 25 ~N~~dse~~~~~L~~~G~~~~~~~-------------e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~--p~~~Vv 89 (502)
T PRK14326 25 MNVHDSERLAGLLEAAGYVRAAEG-------------QDADVVVFNTCAVRENADNRLYGNLGHLAPVKRAN--PGMQIA 89 (502)
T ss_pred CcHHHHHHHHHHHHHCCCEECCCc-------------CCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhC--CCCEEE
Confidence 355566778888988899886411 237999988743211 1235556666554 667666
Q ss_pred EEeccCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 122 MMSLHDSISMVLKCML-KGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~-~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
|.--+... .-.++++ ....|++..+.....|..++..+..
T Consensus 90 vgGc~a~~-~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~ 130 (502)
T PRK14326 90 VGGCLAQK-DRDTILKRAPWVDVVFGTHNIGSLPTLLERARH 130 (502)
T ss_pred EECccccc-CHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhh
Confidence 54434433 3334443 3456788888888888887777643
No 428
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=30.25 E-value=72 Score=32.89 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=44.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH----HHHHHHHcCCCCceEEEEe--ccCCCCCHH--HHHHHHHhcc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGL----AAWETLKCRPHSIDLVLTE--VELPSISGF--ALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~----eAle~L~~~~~~pDLVLlD--v~MP~~dGi--eLL~~Ir~~~ 113 (720)
+||||+|..+.....+...|+..|+++....... +..+++ ..+|-||+- -..|..++. .+++++.+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~----~~~dgliisGGp~~~~~~~~~~~~i~~~~~-- 74 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVA----AQFDGVLLSPGPGTPERAGASIDMVRACAA-- 74 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhh----cCCCEEEECCCCCChhhcchHHHHHHHHHh--
Confidence 4899999998888888999999998776644322 122222 237766652 112332332 34444432
Q ss_pred CCCCCeEEEEe
Q 042954 114 VCKNIPVIMMS 124 (720)
Q Consensus 114 ~~p~ipVIvLT 124 (720)
.++||+-+.
T Consensus 75 --~~~PiLGIC 83 (214)
T PRK07765 75 --AGTPLLGVC 83 (214)
T ss_pred --CCCCEEEEc
Confidence 357877665
No 429
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.22 E-value=3.8e+02 Score=30.88 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred CccEEEEEecCHHHHHHH---HHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEecc--CCCCCHHHHHH
Q 042954 40 MVLRVLLVEADDSTRQII---SALLRKCGYRVAAVP---DG----LAAWETLKCRPHSIDLVLTEVE--LPSISGFALLT 107 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L---~~lL~~~gyeV~~A~---sg----~eAle~L~~~~~~pDLVLlDv~--MP~~dGieLL~ 107 (720)
...+|+||+-|..-...+ +.+-+..+..+.... +. .++++.++. ..+|+||+|.- ++. --++++
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTaGr~~~--d~~lm~ 202 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTSGRHKQ--EDSLFE 202 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCCCcc--hHHHHH
Confidence 356999999886433222 222333455555433 32 245565554 35999999984 322 123444
Q ss_pred HHHhcc--CCCCCeEEEEeccCC--HHHHHHHHH--cCCcEEEe
Q 042954 108 LVMEHD--VCKNIPVIMMSLHDS--ISMVLKCML--KGAADFLI 145 (720)
Q Consensus 108 ~Ir~~~--~~p~ipVIvLTs~~d--~e~~~~Al~--~GA~dYL~ 145 (720)
+++... ..|+-.++++.+... .....++|. .+..+++.
T Consensus 203 El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 203 EMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred HHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 444321 124555666655433 233446663 35555543
No 430
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.21 E-value=4.6e+02 Score=28.78 Aligned_cols=91 Identities=15% Similarity=0.025 Sum_probs=59.2
Q ss_pred EEEEEecCHHHHHHHHHHHHhC----C-CEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTRQIISALLRKC----G-YRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~----g-yeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
-|||=|.+-...-.+...++.. . ..|. .+.+.+|+.+.++. .+|+|++|=+-|+ ++-+.+....
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe----~l~~av~~~~--- 247 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD----MMREAVRVTA--- 247 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHhhc---
Confidence 6888888876655555555322 1 2343 38999999999874 4899999954332 2222232221
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADF 143 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dY 143 (720)
.-.+|-.++.-..+.+.+-...|++-.
T Consensus 248 ~~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 248 GRAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 234677888888998888888887643
No 431
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=30.17 E-value=2.5e+02 Score=30.74 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=58.1
Q ss_pred EEEEEecCHHHHHHHHHHHHh----CC-C-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTRQIISALLRK----CG-Y-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~----~g-y-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.|||=|.+-...-.+...++. .. . -.+.+.+.+||.+.++. .+|+|++|=.-| -++-+.++... .
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~--~ 251 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTN--G 251 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhc--C
Confidence 467777665554445554432 22 2 33448999999999874 379999996544 22223333222 2
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
-.+|..++.-+.+.+.+--..|++-+.
T Consensus 252 -~~~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 252 -RALLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred -CeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 246777888888988888899986443
No 432
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.13 E-value=3.2e+02 Score=29.09 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=46.6
Q ss_pred ccEEEEEecC-HHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 41 VLRVLLVEAD-DSTRQIISALLRKCGYRVAAVPD-------GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDDd-~~~r~~L~~lL~~~gyeV~~A~s-------g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
...|.++=.+ +.. +.+.|+..||.|....+ ..+.+++++. ..||+||+|.- ..+ .+..+.++..
T Consensus 31 g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~vV~D~y--~~~-~~~~~~~k~~ 102 (279)
T TIGR03590 31 GAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEE--EKFDILIVDHY--GLD-ADWEKLIKEF 102 (279)
T ss_pred CCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh--cCCCEEEEcCC--CCC-HHHHHHHHHh
Confidence 3465555433 332 24567888998876543 4466777765 35999999974 333 2456667653
Q ss_pred cCCCCCeEEEEeccC
Q 042954 113 DVCKNIPVIMMSLHD 127 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~ 127 (720)
..++++++...
T Consensus 103 ----~~~l~~iDD~~ 113 (279)
T TIGR03590 103 ----GRKILVIDDLA 113 (279)
T ss_pred ----CCeEEEEecCC
Confidence 35788888654
No 433
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=29.94 E-value=3.8e+02 Score=32.43 Aligned_cols=110 Identities=8% Similarity=-0.024 Sum_probs=71.1
Q ss_pred cEEEEEecCHH----HHH-HHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCC--CCCHHHHHHHHHh
Q 042954 42 LRVLLVEADDS----TRQ-IISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELP--SISGFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~~----~r~-~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP--~~dGieLL~~Ir~ 111 (720)
.+|.|+-=-+. .|. ....+|..-||++.. +.+.+++.+..... ..+|+++--.=. ...+-++++.||+
T Consensus 495 P~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~s--ga~i~viCssD~~Y~~~a~~~~~al~~ 572 (619)
T TIGR00642 495 PKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKA--GAQVAVLCSSDKVYAQQGLEVAKALKA 572 (619)
T ss_pred CeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhc--CCCEEEEeCCCcchHHHHHHHHHHHHh
Confidence 56777653332 222 344455666898875 56677877777653 366666543222 3357789999988
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
.. . .+|+|.+.... ..+....|+++||.--++.-+++..++.
T Consensus 573 ag--~--~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 573 AG--A--KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred CC--C--CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 65 2 37888888754 3346789999999988887666555544
No 434
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=29.60 E-value=2e+02 Score=29.97 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=42.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcC--CCCceEEEEecc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR--VAA-VPDGLAAWETLKCR--PHSIDLVLTEVE 96 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye--V~~-A~sg~eAle~L~~~--~~~pDLVLlDv~ 96 (720)
-+|.-+|-++...+..++.++..|+. |.. ..+..+.+..+... ...||+|++|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 48999999999999999999988762 333 66777777766322 246999999975
No 435
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=29.57 E-value=7e+02 Score=27.15 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHHHh
Q 042954 147 PVRRNELRNLWQHVWR 162 (720)
Q Consensus 147 P~~~~eL~~~l~~vlr 162 (720)
+.+.++|...|..++.
T Consensus 322 ~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 322 IRDDEEVFAKTEALLQ 337 (380)
T ss_pred ECCHHHHHHHHHHHHC
Confidence 3566777777776654
No 436
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.47 E-value=5e+02 Score=28.82 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCEEEE--EC--CHHHHHHHHHc-CCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 55 QIISALLRKCGYRVAA--VP--DGLAAWETLKC-RPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~--A~--sg~eAle~L~~-~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
+.+.+.++..|.+|.. +. +..+...+|++ ....+|.||+|..- .....+++++++..
T Consensus 141 q~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~--~~~~~il~qa~~~g 202 (371)
T cd06388 141 QAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEI--ERLQNILEQIVSVG 202 (371)
T ss_pred HHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCH--HHHHHHHHHHHhcC
Confidence 3344444455666543 11 12233333332 12458999998744 34678888888775
No 437
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=29.35 E-value=2.3e+02 Score=29.65 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=52.7
Q ss_pred HHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEE---EeccCCCCCHHHHHHHHHhccCC--CCCeEEEEeccCCHHHH
Q 042954 60 LLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVL---TEVELPSISGFALLTLVMEHDVC--KNIPVIMMSLHDSISMV 132 (720)
Q Consensus 60 lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVL---lDv~MP~~dGieLL~~Ir~~~~~--p~ipVIvLTs~~d~e~~ 132 (720)
.|...|+. ++.+.+..+|+-..... .+.|= --+.--+.||+.+++.+.+.... ..+ -|+..+..+...+
T Consensus 98 ~L~~~GI~vn~T~vfs~~Qa~~Aa~aG---a~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~t-kILaAS~r~~~~v 173 (220)
T PRK12655 98 KLKKEGIPTLGTAVYSAAQGLLAALAG---AKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPES-MVLAASFKTPRQA 173 (220)
T ss_pred HHHHCCCceeEeEecCHHHHHHHHHcC---CeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCc-EEEEEecCCHHHH
Confidence 46666754 45588889987665542 23221 11122477999999988766432 344 4555666778888
Q ss_pred HHHHHcCCcEEEeC
Q 042954 133 LKCMLKGAADFLIK 146 (720)
Q Consensus 133 ~~Al~~GA~dYL~K 146 (720)
.+++..|++-+-.-
T Consensus 174 ~~~~~~G~d~vTip 187 (220)
T PRK12655 174 LDCLLAGCQSITLP 187 (220)
T ss_pred HHHHHcCCCEEECC
Confidence 89999998865443
No 438
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=29.34 E-value=6.4e+02 Score=26.19 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeccCC------CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 72 PDGLAAWETLKCRPHSIDLVLTEVELP------SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pDLVLlDv~MP------~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.+..++.+..+ ...|.|.+--..+ .--|+++++++++. -.+||+.|-+- ..+.+.++++.||+++-
T Consensus 119 ~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~---~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 119 RDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM---IEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHh---CCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 36666766433 3478887765431 12488999988775 36999999876 57888899999998874
No 439
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.32 E-value=3.9e+02 Score=28.62 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred EEEEEecCHHHHHHHH----HHHHhCC--CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH-HHHHHHHhccC
Q 042954 43 RVLLVEADDSTRQIIS----ALLRKCG--YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF-ALLTLVMEHDV 114 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~----~lL~~~g--yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi-eLL~~Ir~~~~ 114 (720)
.|||-|++-...-.+. .+-+..+ ..+ +.+.+.+|+.+.+.. .+|+|.+|-.-|+ .+ ++++.++..
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e--~l~~~v~~i~~~-- 225 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLKGL-- 225 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhccC--
Confidence 6777777755443332 2222233 233 448899999998863 4899999976552 22 233333322
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+++| |+.++--+.+.+.+....||+.+-+
T Consensus 226 -~~i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 226 -PRVL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred -CCeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 3555 4566667788899999999987754
No 440
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.32 E-value=5e+02 Score=28.20 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred EecCHHHHHHHHHHHHhCCCEEEE-E-----C---CHHHHHHHHHcCCCCceEEEEeccCC--CC---CHHHHHHHHHhc
Q 042954 47 VEADDSTRQIISALLRKCGYRVAA-V-----P---DGLAAWETLKCRPHSIDLVLTEVELP--SI---SGFALLTLVMEH 112 (720)
Q Consensus 47 VDDd~~~r~~L~~lL~~~gyeV~~-A-----~---sg~eAle~L~~~~~~pDLVLlDv~MP--~~---dGieLL~~Ir~~ 112 (720)
..+-..+.++++.+-+..++.|.. . . +..+..+.+.. ...|.|.+.-+.. +. .-+++++.|++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAED--AGAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHH--hCCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455666666665555554433 1 1 23344444554 3378777654322 12 237788888876
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHH-HcCCcEEEe
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCM-LKGAADFLI 145 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al-~~GA~dYL~ 145 (720)
- .+|||...+-.+.+.+.+++ ..||+....
T Consensus 191 ~---~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 V---RIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred C---CCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 3 58999999999999999999 567877654
No 441
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=29.25 E-value=4.7e+02 Score=27.97 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc-CC--CCCHHHHHHHHHhccCCCCCeEEEEeccCCHH
Q 042954 55 QIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE-LP--SISGFALLTLVMEHDVCKNIPVIMMSLHDSIS 130 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~-MP--~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e 130 (720)
..|..+-...|.++.. +.+.+|+-..+.. ..+||=++-+ +. ..| ++....|...-. .++.+|.-++-.+.+
T Consensus 148 ~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd-~~~~~~l~~~ip-~~~~~iseSGI~~~~ 222 (254)
T PF00218_consen 148 EELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVD-LNRTEELAPLIP-KDVIVISESGIKTPE 222 (254)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBH-THHHHHHHCHSH-TTSEEEEESS-SSHH
T ss_pred HHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccC-hHHHHHHHhhCc-cceeEEeecCCCCHH
Confidence 4455555667888766 9999998877753 3677766543 32 223 344444443321 457788889999999
Q ss_pred HHHHHHHcCCcEEEeC
Q 042954 131 MVLKCMLKGAADFLIK 146 (720)
Q Consensus 131 ~~~~Al~~GA~dYL~K 146 (720)
.+.++.+.|++.+|+-
T Consensus 223 d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 223 DARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHHCTTT-SEEEES
T ss_pred HHHHHHHCCCCEEEEC
Confidence 9999999999999986
No 442
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.13 E-value=5.9e+02 Score=25.41 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCEEEEE-CCH----HHHHHHHHcCCCCceEEEEeccCC----CCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 55 QIISALLRKCGYRVAAV-PDG----LAAWETLKCRPHSIDLVLTEVELP----SISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~A-~sg----~eAle~L~~~~~~pDLVLlDv~MP----~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
..+.+..++.|..+... .+. +++..++. ..+|+|-+..... ...+++.++++++.. +. +.|++++
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~---~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~--~~-~~i~v~G 165 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE---LGADYIGVHTGLDEQAKGQNPFEDLQTILKLV--KE-ARVAVAG 165 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH---cCCCEEEEcCCcCcccCCCCCHHHHHHHHHhc--CC-CcEEEEC
Confidence 44555566678776643 233 44544443 2488887753211 123566677777654 33 3455567
Q ss_pred cCCHHHHHHHHHcCCcEEEe
Q 042954 126 HDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 126 ~~d~e~~~~Al~~GA~dYL~ 145 (720)
--..+.+.++++.||+.++.
T Consensus 166 GI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 166 GINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcCHHHHHHHHHcCCCEEEE
Confidence 77888999999999997766
No 443
>PRK15320 transcriptional activator SprB; Provisional
Probab=28.83 E-value=1.8e+02 Score=30.38 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=69.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
..|+|..|.=.+.-.+..+++.. |..|.+|.+....+..+... ||.+|+=.--|.. -+=+.-.+++.. ++-|
T Consensus 2 r~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~e-h~~lf~~l~~~l--~~~~ 75 (251)
T PRK15320 2 RNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHE-HVYLFHALLTRL--QNRK 75 (251)
T ss_pred CcEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchh-HHHHHHHHHHHc--CCCc
Confidence 46888888888888888888875 67888899999888888753 5544443323432 334455555554 7789
Q ss_pred EEEEeccCCHHHHHHHH--HcCCcEEEeCCCCHHHHHHHHH
Q 042954 120 VIMMSLHDSISMVLKCM--LKGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al--~~GA~dYL~KP~~~~eL~~~l~ 158 (720)
|++++..--- ..+|+ -.|+-||+.|. ||...|+
T Consensus 76 v~vv~d~l~~--~dr~vl~~~g~~~~~l~~----el~~~~~ 110 (251)
T PRK15320 76 VLVVADRLYY--IDRCVLQYFGVMDYVLKD----ELSCAIR 110 (251)
T ss_pred eEEEecceee--hhhhhhhhhcchhHHHHH----HHHHHhc
Confidence 9999865422 22332 46888888774 5544444
No 444
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=28.72 E-value=5.9e+02 Score=28.64 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=66.6
Q ss_pred cEEEEEecCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADD-----STRQIISALLRKCGY--RVAAVP--DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~-----~~r~~L~~lL~~~gy--eV~~A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
++++||-+.. ...+.|+++.+..+. .|.... +-++-.+++.. .|++|.=... +.=|+-+++.+..
T Consensus 274 ~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~~-E~Fgi~~lEAMa~- 347 (419)
T cd03806 274 IKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMWN-EHFGIGVVEYMAA- 347 (419)
T ss_pred eEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCcc-CCcccHHHHHHHc-
Confidence 6888887642 355666666666554 344433 45666677753 6777764333 3347888888753
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHH---cCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCML---KGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~---~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.+|||....-.. ..+.+. .|..+||.. +.++|..+|..++..
T Consensus 348 ----G~pvIa~~~ggp---~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 348 ----GLIPLAHASGGP---LLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred ----CCcEEEEcCCCC---chheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 456775432221 223344 678899974 899999999988763
No 445
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.60 E-value=5.1e+02 Score=27.67 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 53 TRQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
....++..+++.|++|+. ..+....+..++. ..+|+||+... ..+...+++.+++..
T Consensus 153 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~--~~~d~vi~~~~--~~~~~~~~~~~~~~g 216 (344)
T cd06348 153 ETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLN--SKPDLIVISAL--AADGGNLVRQLRELG 216 (344)
T ss_pred HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEECCc--chhHHHHHHHHHHcC
Confidence 444555566666665543 1233444444444 23666665542 234455666666553
No 446
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=28.58 E-value=2.4e+02 Score=29.27 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=50.3
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCC-CCH--HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPS-ISG--FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~-~dG--ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+..+.++.+.... --.+|++|+.--+ +.| +++++.+++.. ++|||+--+-.+.+.+.++.+.|+++.+.
T Consensus 148 ~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 5667777666532 2469999996543 233 68888887764 78999999999999999999999988875
No 447
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.45 E-value=2.2e+02 Score=28.89 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPDG------LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg------~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+...++..||.+...... .++++.+.. ..+|.||+....+. -..+++++. ..+|+|++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~---~~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELT---SAQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCC---hHHHHHHhc----CCCCEEEEec
Confidence 45566777788889988764422 134555555 45898877544432 244666654 3589998854
No 448
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.41 E-value=3.8e+02 Score=30.20 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=74.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCH-------HHHHHH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY----RVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISG-------FALLTL 108 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy----eV~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dG-------ieLL~~ 108 (720)
.+-..+.|+-+.+.+.+..+=...+- .+....|.++.+++++.. ....+++.+-=+-+..-| ++.++.
T Consensus 117 ~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~ 196 (358)
T KOG2335|consen 117 GYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKA 196 (358)
T ss_pred CccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHH
Confidence 45667778888888888777766653 445577777777666421 133677776655554444 788999
Q ss_pred HHhccCCCCCeEEEEeccCCHHHHHHHHH-cCCcEEEeC
Q 042954 109 VMEHDVCKNIPVIMMSLHDSISMVLKCML-KGAADFLIK 146 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~-~GA~dYL~K 146 (720)
|++.. +++|||+=-+-.....+.+|++ .||++.+.-
T Consensus 197 v~~~~--~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 197 VRENV--PDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred HHHhC--cCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 98876 6688887777777889999997 999998863
No 449
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=28.40 E-value=5.2e+02 Score=28.95 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=58.2
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEec----cC-CCCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 56 IISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEV----EL-PSISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv----~M-P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
.|..+-+..+..|+. +.+.++|..+++. .+|.|++.= .+ .+...++.|..|++... ..+|||+-.+-..
T Consensus 212 ~l~~lr~~~~~PvivKgv~~~~dA~~a~~~---G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~-~~i~vi~dGGIr~ 287 (351)
T cd04737 212 DIEFIAKISGLPVIVKGIQSPEDADVAINA---GADGIWVSNHGGRQLDGGPASFDSLPEIAEAVN-HRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHhCCcEEEecCCCHHHHHHHHHc---CCCEEEEeCCCCccCCCCchHHHHHHHHHHHhC-CCCeEEEECCCCC
Confidence 344433334444433 5788888777653 478777631 11 12234678888876531 4699999999999
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 042954 129 ISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~K 146 (720)
...+.+++..||+....-
T Consensus 288 g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 288 GEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999987654
No 450
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=28.33 E-value=52 Score=35.77 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred ccCCccEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHHcCCCCceEEEEec
Q 042954 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYR-VAA-VPDGLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 37 l~~m~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~-A~sg~eAle~L~~~~~~pDLVLlDv 95 (720)
+..|.-+|+|||=|+.+...+.+..+..||. +.+ +-|...++-.-.. ..||+.++|-
T Consensus 171 Lt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~--~kFDvfiTDP 229 (354)
T COG1568 171 LTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK--RKFDVFITDP 229 (354)
T ss_pred hcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH--hhCCeeecCc
Confidence 4455667888887777777777777777765 332 3344333321111 2377777774
No 451
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.19 E-value=2.4e+02 Score=28.32 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=51.6
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEecc--CCCCCHHHHHHHHHhccCCCCCeEEEEe--ccCCHHHHHHHHHcCCcEEEeC
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVE--LPSISGFALLTLVMEHDVCKNIPVIMMS--LHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~--MP~~dGieLL~~Ir~~~~~p~ipVIvLT--s~~d~e~~~~Al~~GA~dYL~K 146 (720)
+.+.++|+++++.-. ..+-++++. |-.-.|++.++.|++.. ++..|++=+ .......+.++.++||+-.+..
T Consensus 8 ~~~~~~a~~~~~~l~--~~v~~iev~~~l~~~~g~~~i~~l~~~~--~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 8 LLDIEEALELAEKVA--DYVDIIEIGTPLIKNEGIEAVKEMKEAF--PDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred CCCHHHHHHHHHHcc--cCeeEEEeCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 567788888877543 455567775 43456899999999875 445555222 1222224677889999866655
Q ss_pred CCCH-HHHHHHHHHH
Q 042954 147 PVRR-NELRNLWQHV 160 (720)
Q Consensus 147 P~~~-~eL~~~l~~v 160 (720)
.... ..+...++.+
T Consensus 84 ~~~~~~~~~~~i~~~ 98 (206)
T TIGR03128 84 GVADDATIKGAVKAA 98 (206)
T ss_pred ccCCHHHHHHHHHHH
Confidence 4432 2344444443
No 452
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=28.07 E-value=3e+02 Score=27.73 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=35.7
Q ss_pred CCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcC-CcEE
Q 042954 86 HSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKG-AADF 143 (720)
Q Consensus 86 ~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~G-A~dY 143 (720)
...|.+|+|..-++ .-++++++.++ ..+|+++.-+- +.+.+.++++.| ++++
T Consensus 119 ~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-----~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA-----SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred ccCCEEEEcCCCCCCCCCCcceEChHHhhccc-----cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 34789999986543 13467777665 25788866655 778888888877 6554
No 453
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.02 E-value=3.1e+02 Score=27.54 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||.+..... .. ++++.+.. ..+|.||+....+. ..++++++++. .+|+|++...
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~----~ipvV~~~~~ 88 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR--QRVDGLILTVADAA--TSPALDLLDAE----RVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC--chHHHHHHhhC----CCCEEEEecc
Confidence 456677777888998877532 22 34444444 45898888644332 23566777653 5898888543
No 454
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=28.01 E-value=6.8e+02 Score=26.61 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 53 TRQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
....+++.++..|+++.. ..+....+..+.. ..||+|++-. ....+..+++.+++.. ...|+++...
T Consensus 149 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~--~~pdaV~~~~--~~~~a~~~~~~~~~~G--~~~~~~~~~~ 222 (341)
T cd06341 149 AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAA--AGADAIITVL--DAAVCASVLKAVRAAG--LTPKVVLSGT 222 (341)
T ss_pred HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHh--cCCCEEEEec--ChHHHHHHHHHHHHcC--CCCCEEEecC
Confidence 455567777777775433 2455566666655 3599998753 3336789999999886 4567666554
Q ss_pred cCCHH
Q 042954 126 HDSIS 130 (720)
Q Consensus 126 ~~d~e 130 (720)
-.+.+
T Consensus 223 ~~~~~ 227 (341)
T cd06341 223 CYDPA 227 (341)
T ss_pred CCCHH
Confidence 44443
No 455
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.97 E-value=5.9e+02 Score=27.89 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=59.8
Q ss_pred EEEEEecCHHHHHHHHHHHHh----CCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 43 RVLLVEADDSTRQIISALLRK----CGY--RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~----~gy--eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
-|||=|.+-...-.+...++. ..| .|.. +.+.+|+.+.+.. .+|+|++|=+-|+ +=-+.++.++
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~----- 239 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA----- 239 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc-----
Confidence 688888887666555555533 332 3443 8999999999874 4899999954332 1122333332
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEE
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADF 143 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dY 143 (720)
.-.+|-.++.-..+.+.+-...|++-.
T Consensus 240 -~~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 240 -GRSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred -CceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 234677788888999888888887643
No 456
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.80 E-value=1.8e+02 Score=26.66 Aligned_cols=29 Identities=10% Similarity=0.005 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHH
Q 042954 50 DDSTRQIISALLRKCGYRVAAVPDGLAAW 78 (720)
Q Consensus 50 d~~~r~~L~~lL~~~gyeV~~A~sg~eAl 78 (720)
+......+...|...||++.......+.|
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~AT~gTa~~L 38 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLFATGGTSRVL 38 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEEECcHHHHHH
Confidence 33444455555667788887554434333
No 457
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.64 E-value=4.7e+02 Score=28.40 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=61.6
Q ss_pred ccEEEEEec-CHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHH----HcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 41 VLRVLLVEA-DDSTR---QIISALLRKCGYRVAAVPDGLAAWETL----KCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDD-d~~~r---~~L~~lL~~~gyeV~~A~sg~eAle~L----~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
+.+|.|+-. ..... ..+..+|+..|+++.........+... ......+|+||+ -|.|| .+|+.++..
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDG-T~L~aa~~~ 84 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS----LGGDG-TLISLCRKA 84 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE----ECCCH-HHHHHHHHh
Confidence 456777733 22333 344556666788877644332222100 000123677765 26787 466666654
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
. ...+||+-+- .|=.+||. .++.+++...|..++++.-
T Consensus 85 ~-~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 85 A-EYDKFVLGIH-------------AGHLGFLT-DITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred c-CCCCcEEEEe-------------CCCcccCC-cCCHHHHHHHHHHHHcCCC
Confidence 3 2478888553 36678886 4788999999999887653
No 458
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.59 E-value=3.7e+02 Score=29.97 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 50 DDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 50 d~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
+..+...|.+.-++.|..+....-...+.++|.. .++-..-+--++.+-+.|++.|-+.. -|||+-|+-.+.
T Consensus 88 p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~----~~~~ayKIaS~E~~~~plik~iA~~~----kPiIlSTGma~~ 159 (347)
T COG2089 88 PLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLES----LNPPAYKIASGEINDLPLIKYIAKKG----KPIILSTGMATI 159 (347)
T ss_pred CHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHh----cCCCeEEecCccccChHHHHHHHhcC----CCEEEEcccccH
Confidence 4556667777788888888776667777788764 33334444455677789999997764 499999999988
Q ss_pred HHHHHHH----HcCCcEEEe
Q 042954 130 SMVLKCM----LKGAADFLI 145 (720)
Q Consensus 130 e~~~~Al----~~GA~dYL~ 145 (720)
+.+.+|+ +.|.-+++.
T Consensus 160 ~ei~~av~~~r~~g~~~i~L 179 (347)
T COG2089 160 EEIEEAVAILRENGNPDIAL 179 (347)
T ss_pred HHHHHHHHHHHhcCCCCeEE
Confidence 7776654 677776643
No 459
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=27.47 E-value=49 Score=35.97 Aligned_cols=44 Identities=2% Similarity=-0.099 Sum_probs=34.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 223 YLEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 223 ~v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
+......|+..|..+...+|+.++-+ ..+.|+-+++|||+||.-
T Consensus 138 ~~~gLa~ht~~~~~l~~~~~~~y~~~---------n~dli~Ag~ilHdigK~~ 181 (287)
T COG3481 138 FEGGLAEHTLTVLELYKRISEIYPTV---------NRELIYAGAILHDIGKVL 181 (287)
T ss_pred hhcchHHHHHHHHHHHHHHHhhcccc---------cHHHHHHHHHHhcccccc
Confidence 44556788888888888888766222 457899999999999984
No 460
>PRK12376 putative translaldolase; Provisional
Probab=27.44 E-value=4.6e+02 Score=27.76 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHhCCCE--EEEECCHHHHHHHHHcCCC-CceEE--EEecc-CCCCCHHHHHHHHHhccCC-CCCeEEEEeccCCHHH
Q 042954 59 ALLRKCGYR--VAAVPDGLAAWETLKCRPH-SIDLV--LTEVE-LPSISGFALLTLVMEHDVC-KNIPVIMMSLHDSISM 131 (720)
Q Consensus 59 ~lL~~~gye--V~~A~sg~eAle~L~~~~~-~pDLV--LlDv~-MP~~dGieLL~~Ir~~~~~-p~ipVIvLTs~~d~e~ 131 (720)
+.|...|+. ++.+.+..+|+..+..... ..++| ++.-. --+.||+.+++.+++.... +++.| +..+..+...
T Consensus 106 ~~L~~~GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd~g~D~~~~i~~i~~i~~~~~~tkI-LaASiR~~~~ 184 (236)
T PRK12376 106 KKLSADGVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIADTGVDPVPLMKEALAICHSKPGVEL-LWASPREVYN 184 (236)
T ss_pred HHHHHCCCeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhhcCCCcHHHHHHHHHHHHhCCCcEE-EEEecCCHHH
Confidence 445666765 4558899999755443111 13332 22211 2367999999888765422 34544 4566778889
Q ss_pred HHHHHHcCCcEEEeCC
Q 042954 132 VLKCMLKGAADFLIKP 147 (720)
Q Consensus 132 ~~~Al~~GA~dYL~KP 147 (720)
+.+|...||+-+=.-|
T Consensus 185 v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 185 IIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHcCCCEEEcCH
Confidence 9999999998654433
No 461
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=27.40 E-value=1.7e+02 Score=30.16 Aligned_cols=92 Identities=25% Similarity=0.272 Sum_probs=58.5
Q ss_pred ecCHHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCCe
Q 042954 48 EADDSTRQIISALLRKC-GYRVAA------VPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 48 DDd~~~r~~L~~lL~~~-gyeV~~------A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~ip 119 (720)
+|.......+++++... ++.++. +.+..+||+.|.. ..++=||+-=.-+ -.+|++.|+.+.+... ..+
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~--lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~-~~i- 171 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIE--LGFDRVLTSGGAPTALEGIENLKELVEQAK-GRI- 171 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHH--HT-SEEEESTTSSSTTTCHHHHHHHHHHHT-TSS-
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHh--cCCCEEECCCCCCCHHHHHHHHHHHHHHcC-CCc-
Confidence 34455667777777654 677765 5689999999977 4599999976544 5689999999977652 223
Q ss_pred EEEEeccCCHHHHHHHHH-cCCcEE
Q 042954 120 VIMMSLHDSISMVLKCML-KGAADF 143 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~-~GA~dY 143 (720)
.||.-+--..+.+...++ .|+..|
T Consensus 172 ~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 172 EIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp EEEEESS--TTTHHHHHHHHT-SEE
T ss_pred EEEecCCCCHHHHHHHHHhhCCeEE
Confidence 344444444455555554 777665
No 462
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=27.35 E-value=6.7e+02 Score=27.94 Aligned_cols=88 Identities=13% Similarity=-0.022 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEeccC------------------C-----CCCHHH
Q 042954 53 TRQIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTEVEL------------------P-----SISGFA 104 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlDv~M------------------P-----~~dGie 104 (720)
+.+.|+.+.+..++-|.. + .+.+.|..+.+ ..+|.|.+.=.- + +....+
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~---~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLAD---AGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH---cCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 446677766665554443 2 45555544443 347887763310 0 122345
Q ss_pred HHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.|..+++.. .++|||...+-.+...+.+++..||+.+..
T Consensus 251 ~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 251 SLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred HHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 666666542 479999999999999999999999887754
No 463
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.20 E-value=5.8e+02 Score=27.43 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=44.5
Q ss_pred EEEEEecCH----HHHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 43 RVLLVEADD----STRQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 43 rVLIVDDd~----~~r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
+|.||-++. ...+.+++.|+..|++|.. ..+-...+..++. ..+|+||+-. ...+...+++.+++
T Consensus 146 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~--~~~d~v~~~~--~~~~~~~~~~~~~~ 221 (362)
T cd06343 146 KIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKA--AGADVVVLAT--TPKFAAQAIRKAAE 221 (362)
T ss_pred eEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHh--cCCCEEEEEc--CcHHHHHHHHHHHH
Confidence 555554433 2344556667777876543 1234455556655 4589999754 34567888999888
Q ss_pred ccCCCCCeEEEEec
Q 042954 112 HDVCKNIPVIMMSL 125 (720)
Q Consensus 112 ~~~~p~ipVIvLTs 125 (720)
.. ...++++...
T Consensus 222 ~g--~~~~~~~~~~ 233 (362)
T cd06343 222 LG--WKPTFLLSSV 233 (362)
T ss_pred cC--CCceEEEEec
Confidence 75 2234444443
No 464
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=27.18 E-value=2e+02 Score=29.26 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=31.3
Q ss_pred CCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 86 HSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 86 ~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
..+||||+|=.+- =++--++++.|+..+ +.+ =||||++.-.+.+++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp--~~~-evILTGR~~p~~Lie 164 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRP--SHV-DVILTGPEMPESLLA 164 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCC--CCC-EEEEECCCCCHHHHH
Confidence 4599999996443 245568888888764 444 455888876665544
No 465
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=27.17 E-value=1.8e+02 Score=29.35 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=30.6
Q ss_pred CCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 86 HSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 86 ~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
..+||||+|=.+. =++--++++.|+..+ +.+-| |||+..-.+.+.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp--~~~ev-VlTGR~~p~~l~e 146 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERP--GHQHV-IITGRGCPQDLLE 146 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC--CCCEE-EEECCCCCHHHHH
Confidence 4599999996442 245558888887765 45544 5888876655544
No 466
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=27.12 E-value=6.2e+02 Score=32.65 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCE-------------EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHH
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYR-------------VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFAL 105 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gye-------------V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieL 105 (720)
..+.+|||+--=..-+..++.+.+..+++ |+.++--.+..+.+.........|-+|+. |--++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~----D~e~L 642 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS----DSESL 642 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC----CHHHH
Confidence 34679999998555554444444444444 65565333333333321113456777752 33345
Q ss_pred HHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 106 LTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 106 L~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
++.|.. .++.|+++-.......+..|+++|.+=+..| ...++...+...+-+
T Consensus 643 ~~~v~~----~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 643 LKYVSQ----VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred HHhhcC----CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHHH
Confidence 555554 3454554444556788899999999877777 667776665555433
No 467
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=27.09 E-value=6.5e+02 Score=27.62 Aligned_cols=88 Identities=16% Similarity=0.018 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEecc------------C--------C-----CCCH
Q 042954 53 TRQIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTEVE------------L--------P-----SISG 102 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlDv~------------M--------P-----~~dG 102 (720)
+.+.|+.+.+...+-|.. . .+.++|..+.+ ..+|.|.+.=. - . +...
T Consensus 166 ~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~---~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t 242 (326)
T cd02811 166 WLERIEELVKALSVPVIVKEVGFGISRETAKRLAD---AGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH---cCCCEEEECCCCCCcccccccccccccccccccccccccccH
Confidence 457778877765554443 2 45566655443 34788875321 0 0 1222
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.+..++... .++|||.-.+-.+...+.+++..||+.+-.
T Consensus 243 ~~~l~~~~~~~--~~ipIiasGGIr~~~dv~kal~lGAd~V~i 283 (326)
T cd02811 243 AASLLEVRSAL--PDLPLIASGGIRNGLDIAKALALGADLVGM 283 (326)
T ss_pred HHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 45566665543 379999999999999999999999887643
No 468
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.92 E-value=4.5e+02 Score=30.05 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=56.9
Q ss_pred cEEEEEec-CHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEecc-CCC--CCHHHHHHHHHhccCC
Q 042954 42 LRVLLVEA-DDSTRQIISALLRKCGYRVAAVP--DGLAAWETLKCRPHSIDLVLTEVE-LPS--ISGFALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDD-d~~~r~~L~~lL~~~gyeV~~A~--sg~eAle~L~~~~~~pDLVLlDv~-MP~--~dGieLL~~Ir~~~~~ 115 (720)
-+||+.+| -...+..+..+|.+.|++|..+. +..+.++.+.. ...++|+++.- -|- +--+..+.++-...
T Consensus 103 D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~-- 178 (396)
T COG0626 103 DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAY-- 178 (396)
T ss_pred CEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhc--
Confidence 58888888 45578888999999999998765 55556666643 34899999872 232 22233333333222
Q ss_pred CCCeEEEEeccCCHH-HHHHHHHcCCcEE
Q 042954 116 KNIPVIMMSLHDSIS-MVLKCMLKGAADF 143 (720)
Q Consensus 116 p~ipVIvLTs~~d~e-~~~~Al~~GA~dY 143 (720)
. ++++-...-.. ...+.+..||+=.
T Consensus 179 -g--~~vvVDNTfatP~~q~PL~~GaDIV 204 (396)
T COG0626 179 -G--ALVVVDNTFATPVLQRPLELGADIV 204 (396)
T ss_pred -C--CEEEEECCcccccccChhhcCCCEE
Confidence 2 33343333332 4456777776533
No 469
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.91 E-value=5.7e+02 Score=29.87 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCCceEEEEeccC-CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVEL-PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~M-P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
..+.++.|.. ...|+|++|.-- +...-++++++||+.. |+++||. -.-...+.+..++++||+...
T Consensus 228 ~~~~a~~Lv~--aGvd~i~~D~a~~~~~~~~~~i~~ik~~~--p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 228 VAAKARALLE--AGVDVLVVDTAHGHQEKMLEALRAVRALD--PGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHHHH--hCCCEEEEeccCCccHHHHHHHHHHHHHC--CCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 3344444443 348999999854 3556678999999876 7765553 244567888889999988754
No 470
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=26.86 E-value=4.2e+02 Score=28.77 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=49.7
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH--HHHHHHHHhccCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR-VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISG--FALLTLVMEHDVCKN 117 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye-V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG--ieLL~~Ir~~~~~p~ 117 (720)
.+|+-||-++...+..++.++..+.. +.. ..+..+..... ...||+||+| |...| -++++.|.... +.
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~---~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~--~~ 267 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ---GEVPDLVLVN---PPRRGIGKELCDYLSQMA--PR 267 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc---CCCCeEEEEC---CCCCCccHHHHHHHHHcC--CC
Confidence 58999999999999888888777652 333 55665543221 1349999999 43444 37777776653 32
Q ss_pred CeEEEEeccC
Q 042954 118 IPVIMMSLHD 127 (720)
Q Consensus 118 ipVIvLTs~~ 127 (720)
.||.++...
T Consensus 268 -~ivyvsc~p 276 (315)
T PRK03522 268 -FILYSSCNA 276 (315)
T ss_pred -eEEEEECCc
Confidence 355555433
No 471
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=26.83 E-value=2.5e+02 Score=31.43 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=40.8
Q ss_pred CceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 87 SIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 87 ~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.+|+|++|+.--... -++++++||+.. |+++|| .-.-...+.+...+.+||+...
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~~--P~~~vI-aGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREAW--PDKTIC-AGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHhC--CCCcEE-EecccCHHHHHHHHHcCCCEEE
Confidence 589999999654333 468999999876 776644 4445567788888899999653
No 472
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=26.76 E-value=7.5e+02 Score=25.81 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=60.7
Q ss_pred cEEEEEecCHHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCC---H----HHHHHHHHh
Q 042954 42 LRVLLVEADDSTRQIISALLR---KCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS---G----FALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~---~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d---G----ieLL~~Ir~ 111 (720)
..|.|---+|.++..+..+++ ..|+.+..-+||.-..+.+. .+|.|.+|+..|... . .+.++.+++
T Consensus 74 ~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~----~~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~ 149 (238)
T TIGR03365 74 LHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR----DLDDLTLSPKPPSSGMETDWQALDDCIERLDD 149 (238)
T ss_pred CeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh----hCCEEEEeCCCCCCCCCCcHHHHHHHHHHhhh
Confidence 468899999998766666554 55899888888876555443 278899999988522 1 234445543
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcC-CcEEEeCCCCH
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKG-AADFLIKPVRR 150 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~G-A~dYL~KP~~~ 150 (720)
. ..-.+.+| ++...+.+.+.+..... ..-++.-|...
T Consensus 150 ~-~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 150 G-PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred c-CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 1 11234444 44555555555444322 22355666443
No 473
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=26.76 E-value=4.3e+02 Score=29.82 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=58.3
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEe-ccCCCCC----HHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 56 IISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTE-VELPSIS----GFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 56 ~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlD-v~MP~~d----GieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
.|+.+-+.....++ .+.+.++|..+++. .+|.|++- ..-...+ .+++|..|++.. .+|||+-.+...
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~---G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~ 300 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIEL---GADGVILSNHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRR 300 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHC---CcCEEEECCCCcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCC
Confidence 34444444443333 37799999888763 37776542 2222223 488899998753 489999999999
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 042954 129 ISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~K 146 (720)
...+.+|+..||+..+.-
T Consensus 301 g~Dv~KALaLGA~aV~iG 318 (361)
T cd04736 301 GSDIVKALALGANAVLLG 318 (361)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999877643
No 474
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=26.60 E-value=1.7e+02 Score=29.43 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCceEEEEeccC-----CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHH
Q 042954 86 HSIDLVLTEVEL-----PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKC 135 (720)
Q Consensus 86 ~~pDLVLlDv~M-----P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~A 135 (720)
..+||||+|=.+ --++--++++.|...+ +.+ =||||+..-.+.+.++
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp--~~~-evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRP--ESL-EVVLTGRNAPEELIEA 146 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS---TT--EEEEE-SS--HHHHHH
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCC--CCe-EEEEECCCCCHHHHHh
Confidence 459999999633 2346668888888654 444 5558988877666554
No 475
>PRK07024 short chain dehydrogenase; Provisional
Probab=26.57 E-value=5.8e+02 Score=26.00 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=47.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc-CC--CCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RP--HSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~-~~--~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
|+.+|||.--...+-..+...|.+.|+.|+.+..-.+.++.+.. .. ..+..+-+|+.-+. +-.++++.+.+.. .
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~-~i~~~~~~~~~~~--g 77 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDAD-ALAAAAADFIAAH--G 77 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHH-HHHHHHHHHHHhC--C
Confidence 34689999999999999999888889998875533333332221 11 12444555553322 2335566665544 2
Q ss_pred CCeEEEEe
Q 042954 117 NIPVIMMS 124 (720)
Q Consensus 117 ~ipVIvLT 124 (720)
.+-+|+..
T Consensus 78 ~id~lv~~ 85 (257)
T PRK07024 78 LPDVVIAN 85 (257)
T ss_pred CCCEEEEC
Confidence 33455544
No 476
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.55 E-value=7.4e+02 Score=26.46 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 53 TRQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
....++..++..|++|+. ..+....+..|+. ..+|+||+... +.+...+++.+++.. -..+++..+
T Consensus 160 ~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~~d~v~~~~~--~~~~~~~~~~~~~~g--~~~~~~~~~ 232 (344)
T cd06345 160 IDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKA--ADPDVIIAGFS--GNVGVLFTQQWAEQK--VPIPTIGIS 232 (344)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHh--cCCCEEEEeec--CchHHHHHHHHHHcC--CCCceEEec
Confidence 334456666666776554 1344455555554 34788877653 334667777777654 234555443
No 477
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=26.37 E-value=1.9e+02 Score=28.98 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=34.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT 93 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl 93 (720)
|+|||--......+.+.|+..|+++....+..+ + ..+|.||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l----~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I----LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h----ccCCEEEE
Confidence 688999888999999999999999988886543 2 23788887
No 478
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=26.34 E-value=1.2e+02 Score=31.13 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=31.0
Q ss_pred CCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 86 HSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 86 ~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
..+||||+|=.+. -++--++++.|...+ +.+ =||||++.-.+.+++
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp--~~~-evVlTGR~~p~~Lie 164 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARP--GMQ-HVVITGRGAPRELIE 164 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC--CCC-EEEEECCCCCHHHHH
Confidence 5599999996443 235668888887654 444 455888876655544
No 479
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.32 E-value=8.6e+02 Score=27.42 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=44.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccC-------CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVEL-------PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~M-------P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+..+-.+.+.+ ..+|+|.++.+. +..+-..+.+.+++. ++|||. -.-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45565566655 348999997642 222455666666653 588876 4556678889999999998865
No 480
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=26.31 E-value=8.1e+02 Score=26.18 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCEEEE---EC------CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 53 TRQIISALLRKCGYRVAA---VP------DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~---A~------sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
..+.+...|+..|.+|+. .. +....+..++. ..+|+||+... ..+...+++++++..
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~--~~~dvvi~~~~--~~~~~~~~~~a~~~g 216 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKE--KDSRVIVVHFS--PDLARRVFCEAYKLG 216 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhc--CCCeEEEEECC--hHHHHHHHHHHHHcC
Confidence 455677777777777654 22 33444555544 34888887654 346778888887765
No 481
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.23 E-value=9.3e+02 Score=28.98 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=61.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+++||-|-+ .+..++.+.+..|. .|.......+...++.. .||.++=-. -+.-|+-+++.+.. .+|
T Consensus 430 irLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA~-----GlP 498 (578)
T PRK15490 430 TRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQMV-----GVP 498 (578)
T ss_pred eEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHHh-----CCC
Confidence 4667776654 34455555555543 34444444444445532 577766332 24456778877753 468
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
||.- .... ..+.+..|..+|+..|.+...|...+..
T Consensus 499 VVAT-dvGG---~~EiV~dG~nG~LVp~~D~~aLa~ai~l 534 (578)
T PRK15490 499 VIST-PAGG---SAECFIEGVSGFILDDAQTVNLDQACRY 534 (578)
T ss_pred EEEe-CCCC---cHHHcccCCcEEEECCCChhhHHHHHHH
Confidence 8843 3332 2356668999999999888777666543
No 482
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=26.21 E-value=5.7e+02 Score=27.24 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=17.1
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
+|+||+... ..+...+++++++....+.+++|...
T Consensus 196 ~d~ii~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~ 230 (346)
T cd06330 196 PDAIFSSLW--GGDLVTFVRQANARGLFDGTTVVLTL 230 (346)
T ss_pred CCEEEEecc--cccHHHHHHHHHhcCcccCceEEeec
Confidence 666665432 23455666666555422344444433
No 483
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.06 E-value=5e+02 Score=28.47 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=60.8
Q ss_pred EEecCHHHHHHHHHHHHhCCCEEEE-E-----C---CHHHHHHHHHcCCCCceEEEEeccC-C----CCCHHHHHHHHHh
Q 042954 46 LVEADDSTRQIISALLRKCGYRVAA-V-----P---DGLAAWETLKCRPHSIDLVLTEVEL-P----SISGFALLTLVME 111 (720)
Q Consensus 46 IVDDd~~~r~~L~~lL~~~gyeV~~-A-----~---sg~eAle~L~~~~~~pDLVLlDv~M-P----~~dGieLL~~Ir~ 111 (720)
++.|.+.+.++++.+-...++.|.. . . +..+..+.+.. ...|.|.+.-+. + +...++++++|++
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~--~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED--CGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH--hCCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455666777777665555544432 1 1 23344444544 337777665432 2 2234888899987
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHH-cCCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCML-KGAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~-~GA~dYL~ 145 (720)
. .++|||..-+-.+.+.+.++++ .||+..+.
T Consensus 192 ~---~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 K---VSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred h---cCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 6 3699999988889999999997 58887754
No 484
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=26.04 E-value=88 Score=31.70 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=34.6
Q ss_pred hCCCEEEE---ECC---HHHHHHHHHcCCCCceEEEEeccCC-CC-----CHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 63 KCGYRVAA---VPD---GLAAWETLKCRPHSIDLVLTEVELP-SI-----SGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 63 ~~gyeV~~---A~s---g~eAle~L~~~~~~pDLVLlDv~MP-~~-----dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
..|++++- ..+ -.+..++|.+. +.|++++|+..- .. .-..|++.||+.+ |++|||+++..
T Consensus 31 ~l~~~~iNLGfsG~~~le~~~a~~ia~~--~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~ 102 (178)
T PF14606_consen 31 RLGLDVINLGFSGNGKLEPEVADLIAEI--DADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVSPI 102 (178)
T ss_dssp HHT-EEEEEE-TCCCS--HHHHHHHHHS----SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE--
T ss_pred HcCCCeEeeeecCccccCHHHHHHHhcC--CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecC
Confidence 34777664 111 23345666664 479999998421 11 2357899999987 99999999954
No 485
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=26.01 E-value=3.9e+02 Score=30.34 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe---ccCC-CCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 52 STRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE---VELP-SISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD---v~MP-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
.--+.+...|...||+++.. ...+|||++. +..+ ....+++++++++.. +..+.|++++.-
T Consensus 14 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~--~~~~~vvvgGc~ 78 (429)
T TIGR00089 14 ADSEIMAGLLKEAGYEVTDD-------------PEEADVIIINTCAVREKAEQKVRSRLGELAKLK--KKNAKIVVAGCL 78 (429)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEecceeechHHHHHHHHHHHHHHhC--cCCCEEEEECcc
Confidence 44567788888889977641 1347999987 3333 334678888887654 333245666654
Q ss_pred CHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 128 SISMVLKCM-LKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 128 d~e~~~~Al-~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
-.....+++ ...-.|+++-+-....|...+..+.
T Consensus 79 a~~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~ 113 (429)
T TIGR00089 79 AQREGEELLKRIPEVDIVLGPQNKERIPEAIESAE 113 (429)
T ss_pred cccCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh
Confidence 333333433 3334556777777777777776654
No 486
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=25.81 E-value=8.1e+02 Score=25.92 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc---CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHh
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH---DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWR 162 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~---~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr 162 (720)
.|++|+. .+ +..+++.+. -.+|+|+.... .......+.+..+-.+++..+- +.++|.++|..++.
T Consensus 251 ad~~v~~---~g--~~~l~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 251 ADLVISR---AG--ASTVAELAA-----AGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CCEEEEC---CC--hhHHHHHHH-----cCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 5666652 11 345555554 35788875321 1222223345556677887664 48999998888775
No 487
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.63 E-value=6e+02 Score=26.08 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeccCC---CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSID-LVLTEVELP---SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pD-LVLlDv~MP---~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+..+..+.+.. ..++ |+++|+..- ..-.+++++++++.. .+|||+.-+-.+.+.+.+++..||++.++
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~---~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDSV---DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555555544 2355 556666321 223578899998763 68999999999899999999999998765
No 488
>PLN02334 ribulose-phosphate 3-epimerase
Probab=25.61 E-value=7.5e+02 Score=25.45 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCCC-------CHHHHHHHHHhccCCCCCeE
Q 042954 51 DSTRQIISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPSI-------SGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~~-------dGieLL~~Ir~~~~~p~ipV 120 (720)
......++.+. ..|..+..+. +..+.++.+... ..+|.|++=-.-|+. .|++.++++++.. ..+||
T Consensus 102 d~~~~~~~~i~-~~g~~iGls~~~~t~~~~~~~~~~~-~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~--~~~~I 177 (229)
T PLN02334 102 IHLHRLIQQIK-SAGMKAGVVLNPGTPVEAVEPVVEK-GLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY--PELDI 177 (229)
T ss_pred hhHHHHHHHHH-HCCCeEEEEECCCCCHHHHHHHHhc-cCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC--CCCcE
Confidence 33444444444 4455554433 345555544321 016766543333432 4566777777653 45665
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++.- --..+.+.+++++||+.++.=
T Consensus 178 ~a~G-GI~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 178 EVDG-GVGPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred EEeC-CCCHHHHHHHHHcCCCEEEEC
Confidence 5544 446888999999999977554
No 489
>PRK08185 hypothetical protein; Provisional
Probab=25.61 E-value=6.8e+02 Score=27.22 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred CCCEEEE--ECCHHHHHHHHHcC-CCCceEEEE-eccCCCCCHHHHHHHHHhccCCCCCeEEEEeccC-CHHHHHHHHHc
Q 042954 64 CGYRVAA--VPDGLAAWETLKCR-PHSIDLVLT-EVELPSISGFALLTLVMEHDVCKNIPVIMMSLHD-SISMVLKCMLK 138 (720)
Q Consensus 64 ~gyeV~~--A~sg~eAle~L~~~-~~~pDLVLl-Dv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~-d~e~~~~Al~~ 138 (720)
.+|-|-. +.|.+.+...++.. ...-.|||. .-.--...|.++...++.......+||.+--.|. +.+.+.+|++.
T Consensus 11 ~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~ 90 (283)
T PRK08185 11 HQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRC 90 (283)
T ss_pred cCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc
Confidence 3677665 66777666555421 012334442 2111122345555555544433579999999998 67899999999
Q ss_pred CCcEEEeC--CCCHHHHHHHHHHHHhhcc
Q 042954 139 GAADFLIK--PVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 139 GA~dYL~K--P~~~~eL~~~l~~vlr~~~ 165 (720)
|....+.- .++.++.....+++.+..+
T Consensus 91 Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~ 119 (283)
T PRK08185 91 GFTSVMIDGSLLPYEENVALTKEVVELAH 119 (283)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 97777654 5788888877777775544
No 490
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=25.60 E-value=3.8e+02 Score=27.33 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHcCCCCceEEEEeccCCCCC--HHHHHHHHHhccCCCCCeEEEE
Q 042954 52 STRQIISALLRKCGYRVAAVPD---G---LAAWETLKCRPHSIDLVLTEVELPSIS--GFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g---~eAle~L~~~~~~pDLVLlDv~MP~~d--GieLL~~Ir~~~~~p~ipVIvL 123 (720)
.+...+.+.++..||.+..+.. . .++++.+.. ..+|-||+-...+... ..++++++++ ..+|||++
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~~~~~~~~~~~~~~~~----~~ipvV~~ 89 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLS--QGIDGLIIEPTKSALPNPNIDLYLKLEK----LGIPYVFI 89 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeccccccccccHHHHHHHHH----CCCCEEEE
Confidence 4566777888888999877543 2 234555555 4599998743322211 2255666654 35899988
Q ss_pred ec
Q 042954 124 SL 125 (720)
Q Consensus 124 Ts 125 (720)
-.
T Consensus 90 ~~ 91 (273)
T cd01541 90 NA 91 (273)
T ss_pred ec
Confidence 54
No 491
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=25.55 E-value=5.1e+02 Score=29.53 Aligned_cols=97 Identities=10% Similarity=0.233 Sum_probs=59.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHc-CCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG-YRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g-yeV~~A~sg~eAle~L~~-~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++|||+-- -.+...+...|...+ ++|+.|+-..+..+.+.. .......+.+|+. +.-.+.+.|+.. ++
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~----d~~al~~li~~~----d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA----DVDALVALIKDF----DL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc----ChHHHHHHHhcC----CE
Confidence 468888888 666666666666555 888887655444444432 1224667777762 222444555443 55
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
-|.++-.+-+...+..|++.|++ ||.=-
T Consensus 72 VIn~~p~~~~~~i~ka~i~~gv~-yvDts 99 (389)
T COG1748 72 VINAAPPFVDLTILKACIKTGVD-YVDTS 99 (389)
T ss_pred EEEeCCchhhHHHHHHHHHhCCC-EEEcc
Confidence 66666666677777788888875 55443
No 492
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.54 E-value=7.8e+02 Score=25.65 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=64.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHHcCCCCceEEEEeccC-CCCCHHHHHHHHHhccCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAA--VPDGLAAWETLKCRPHSIDLVLTEVEL-PSISGFALLTLVMEHDVC 115 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~--A~sg~eAle~L~~~~~~pDLVLlDv~M-P~~dGieLL~~Ir~~~~~ 115 (720)
..+++|+-+.+. ...+.++++..+. .|.. .-+..+..+++.. .|++|+-... .+.-|+.+++.+..
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~~---- 288 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMAF---- 288 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHHc----
Confidence 367777776543 3345555544432 3333 3344555666643 5777653221 23446777877753
Q ss_pred CCCeEEEEeccCCHHHHHHHHH-cCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 116 KNIPVIMMSLHDSISMVLKCML-KGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~-~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.+|||+ |...... +.+. .|..+|+..+-+.+++...|..++..
T Consensus 289 -g~Pvi~-~~~~~~~---~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 289 -GKPVIS-TEIGTGG---SYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred -CCCEEe-cCCCCch---hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 467875 3332222 2233 47889999999999999999998764
No 493
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.46 E-value=7.2e+02 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=28.3
Q ss_pred EEEecCHHHHHHHHHHHHhCCC---EEEE-ECCHHHHHHHHHcCCCCceEEE-EeccC
Q 042954 45 LLVEADDSTRQIISALLRKCGY---RVAA-VPDGLAAWETLKCRPHSIDLVL-TEVEL 97 (720)
Q Consensus 45 LIVDDd~~~r~~L~~lL~~~gy---eV~~-A~sg~eAle~L~~~~~~pDLVL-lDv~M 97 (720)
+|..++......+.+.|...|+ +|.. ...+.++++.+++.- ++++| .+..+
T Consensus 20 V~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl 75 (212)
T PRK05718 20 VIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVL 75 (212)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeecc
Confidence 3445555555555566666565 4443 456777777776532 56644 34433
No 494
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=25.39 E-value=8e+02 Score=25.92 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=63.7
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHcCCCCceEEEEeccC-C----CCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG--YRVAAV--PDGLAAWETLKCRPHSIDLVLTEVEL-P----SISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A--~sg~eAle~L~~~~~~pDLVLlDv~M-P----~~dGieLL~~Ir~~ 112 (720)
.+++||-+.+.. ..++.+....| ..|... -+.++..+++.. .|++|+-... + ..-|..+++.+..
T Consensus 220 ~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a~- 293 (367)
T cd05844 220 VRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQAS- 293 (367)
T ss_pred eEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHHc-
Confidence 567777765432 34555555533 233332 234555566643 5676653321 1 1236677777743
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.+|||. |.... ..+.+..|..+++..+.+.++|...|..++..
T Consensus 294 ----G~PvI~-s~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 294 ----GVPVVA-TRHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred ----CCCEEE-eCCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 468875 33332 33455667788999999999999999887653
No 495
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=25.34 E-value=3.3e+02 Score=28.59 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=43.8
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH-HHHHHHHhccCCCC
Q 042954 43 RVLLVEADDSTRQIISALLRKCGY----RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF-ALLTLVMEHDVCKN 117 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gy----eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi-eLL~~Ir~~~~~p~ 117 (720)
|++.|-++...+......|...|. +++.....++++..++ .+|.+|+|...- +-+ ++|+.++-. +.
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~~--d~~~~vl~~~~~~---~~ 141 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKRE--DFAARVLRAAKLS---PR 141 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCch--hHHHHHHHHhccC---CC
Confidence 555555555556666666665553 4444555677776663 389999999853 344 677776533 33
Q ss_pred CeEEEEe
Q 042954 118 IPVIMMS 124 (720)
Q Consensus 118 ipVIvLT 124 (720)
--||+..
T Consensus 142 GaVVV~~ 148 (218)
T PF07279_consen 142 GAVVVCY 148 (218)
T ss_pred ceEEEEe
Confidence 3444433
No 496
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.31 E-value=2.1e+02 Score=29.69 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=50.7
Q ss_pred ECCHHHHHHHHHcCCCCce-EEEEeccCCC---CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 71 VPDGLAAWETLKCRPHSID-LVLTEVELPS---ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pD-LVLlDv~MP~---~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+..+..+.+... .+| |+|+|+.--+ ..-++++++|++.. .+||++--+-.+.+.+.+++..|++..+.=
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 34666766666553 254 7777876321 12367888888763 589999999999999999999998776654
No 497
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=25.30 E-value=8.1e+02 Score=25.75 Aligned_cols=118 Identities=14% Similarity=0.002 Sum_probs=84.7
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHcCCCCceEEEE----eccCCCCC-HHHHHHHHHhcc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY---RVAAVPDGLAAWETLKCRPHSIDLVLT----EVELPSIS-GFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy---eV~~A~sg~eAle~L~~~~~~pDLVLl----Dv~MP~~d-GieLL~~Ir~~~ 113 (720)
+.|+-+-++..+...++..=+...+ +.....+..++.++|++ ..+|++++ |..+-+.+ |.+.|..+++..
T Consensus 84 ~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~--~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~ 161 (217)
T COG0269 84 VTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKE--LGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLS 161 (217)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHH--hCCCEEEEEecccHhhcCCCccHHHHHHHHHhh
Confidence 5778888888888777766544332 34457788999999986 34899996 66666666 478899998875
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEE-----EeCCCCHHHHHHHHHHHHhh
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADF-----LIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY-----L~KP~~~~eL~~~l~~vlr~ 163 (720)
...-.|.+++--..+.+..+...|++-| |++--++.+-...++..+.+
T Consensus 162 --~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 162 --DLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred --ccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhc
Confidence 3336778899999999999999997655 45666666666666555543
No 498
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.28 E-value=5.4e+02 Score=27.28 Aligned_cols=55 Identities=9% Similarity=0.260 Sum_probs=42.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcC---CCCceEEEEecc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAA-VPDGLAAWETLKCR---PHSIDLVLTEVE 96 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~-A~sg~eAle~L~~~---~~~pDLVLlDv~ 96 (720)
-+|.-+|-++...+.-+..++..|+ .|.. ..++.+.+..+... ...||+|++|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4899999999999988999998875 3443 66777777766421 146999999986
No 499
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=25.25 E-value=2.8e+02 Score=24.83 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 52 STRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
.+.+.++++++..|+.+.. +.+..++-... ..+|+||+--+.- ..+..|++.....++||.++-..
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~----~~~Diil~~Pqv~-----~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYI----DDADVVLLGPQVR-----YMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhc----CCCCEEEEChhHH-----HHHHHHHHHhccCCCcEEEcChH
Confidence 3456778888888876544 44555544332 3489999975442 23455554322367899988653
No 500
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.07 E-value=4.4e+02 Score=24.23 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=55.3
Q ss_pred cEEEEEecCH----HHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEADD----STRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~----~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.+||+|=..- .+...++++++..|+++.. +.+..+.-..+.. ..+|+||+--+.- =.+..+++.....
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~--~~~DvIll~PQi~-----~~~~~i~~~~~~~ 74 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAA--AEYDLYLVSPQTK-----MYFKQFEEAGAKV 74 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhcc--CCCCEEEEChHHH-----HHHHHHHHHhhhc
Confidence 4677766544 3455567777777876655 4455554444332 3489999864321 1234455443235
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~ 158 (720)
++||.++... +|-.=|.+.+.+...|.
T Consensus 75 ~ipv~~I~~~---------------~Y~~~~~~~~~~~~~~~ 101 (104)
T PRK09590 75 GKPVVQIPPQ---------------AYIPIPMGIEKMAKLIL 101 (104)
T ss_pred CCCEEEeCHH---------------HcCCCccCHHHHHHHHH
Confidence 7899988643 35555566666665554
Done!