Query 042954
Match_columns 720
No_of_seqs 458 out of 2369
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 2.9E-25 9.9E-30 209.4 16.0 121 41-163 12-133 (134)
2 3mm4_A Histidine kinase homolo 99.9 3.2E-24 1.1E-28 213.5 16.0 163 1-166 18-199 (206)
3 3gl9_A Response regulator; bet 99.9 7.7E-22 2.6E-26 178.5 17.9 121 40-162 1-121 (122)
4 3t6k_A Response regulator rece 99.9 4.3E-21 1.5E-25 176.9 17.9 124 41-166 4-127 (136)
5 3f6p_A Transcriptional regulat 99.9 7.4E-21 2.5E-25 171.3 17.6 119 40-163 1-119 (120)
6 2lpm_A Two-component response 99.9 3.6E-23 1.2E-27 192.4 -0.3 117 37-162 4-121 (123)
7 3h1g_A Chemotaxis protein CHEY 99.8 3.1E-20 1.1E-24 169.0 16.9 122 41-163 5-127 (129)
8 2r25_B Osmosensing histidine p 99.8 3.4E-20 1.2E-24 170.1 16.7 123 41-164 2-128 (133)
9 3crn_A Response regulator rece 99.8 7.1E-20 2.4E-24 167.3 17.5 122 41-166 3-124 (132)
10 3gt7_A Sensor protein; structu 99.8 8.9E-20 3.1E-24 171.5 18.7 125 40-166 6-130 (154)
11 3hzh_A Chemotaxis response reg 99.8 4.3E-20 1.5E-24 174.3 16.1 125 36-162 31-156 (157)
12 3rqi_A Response regulator prot 99.8 1.7E-20 5.9E-25 182.4 13.5 121 41-165 7-127 (184)
13 1srr_A SPO0F, sporulation resp 99.8 6.3E-20 2.1E-24 165.0 15.9 120 40-163 2-121 (124)
14 1dbw_A Transcriptional regulat 99.8 1.8E-19 6.3E-24 162.6 18.9 121 41-165 3-123 (126)
15 3jte_A Response regulator rece 99.8 1.2E-19 4.2E-24 167.0 17.9 125 41-167 3-127 (143)
16 1tmy_A CHEY protein, TMY; chem 99.8 9.1E-20 3.1E-24 162.7 15.9 118 40-161 1-119 (120)
17 2pl1_A Transcriptional regulat 99.8 2.2E-19 7.4E-24 160.1 18.2 119 42-164 1-119 (121)
18 3lua_A Response regulator rece 99.8 3.9E-20 1.3E-24 170.1 13.7 127 40-167 3-131 (140)
19 4e7p_A Response regulator; DNA 99.8 1.7E-19 5.8E-24 168.3 17.8 131 33-167 12-144 (150)
20 3m6m_D Sensory/regulatory prot 99.8 1.4E-19 4.6E-24 168.5 17.0 123 40-164 13-137 (143)
21 1zgz_A Torcad operon transcrip 99.8 2.7E-19 9.2E-24 160.0 18.1 119 40-163 1-119 (122)
22 3r0j_A Possible two component 99.8 1.2E-19 4.2E-24 184.7 17.9 122 40-165 22-143 (250)
23 3f6c_A Positive transcription 99.8 5.6E-20 1.9E-24 167.2 13.7 126 41-170 1-127 (134)
24 3heb_A Response regulator rece 99.8 3E-19 1E-23 166.8 18.8 128 40-167 3-139 (152)
25 3kht_A Response regulator; PSI 99.8 1.5E-19 5.2E-24 166.9 16.6 125 40-166 4-131 (144)
26 2jba_A Phosphate regulon trans 99.8 4.1E-20 1.4E-24 166.2 12.0 124 40-165 1-124 (127)
27 1mb3_A Cell division response 99.8 1.6E-19 5.5E-24 161.6 15.7 121 42-164 2-122 (124)
28 3hv2_A Response regulator/HD d 99.8 2.7E-19 9.1E-24 167.5 17.7 123 40-166 13-136 (153)
29 3kto_A Response regulator rece 99.8 6.8E-20 2.3E-24 168.3 13.4 122 41-166 6-129 (136)
30 3b2n_A Uncharacterized protein 99.8 2E-19 6.8E-24 164.5 16.3 123 41-167 3-127 (133)
31 3eod_A Protein HNR; response r 99.8 2.1E-19 7.3E-24 162.8 16.2 122 40-165 6-128 (130)
32 3hdv_A Response regulator; PSI 99.8 3.7E-19 1.3E-23 162.4 17.6 125 40-166 6-130 (136)
33 2a9o_A Response regulator; ess 99.8 3.4E-19 1.2E-23 158.3 16.8 118 41-163 1-118 (120)
34 3cfy_A Putative LUXO repressor 99.8 1.8E-19 6.2E-24 166.1 15.4 121 41-165 4-124 (137)
35 3grc_A Sensor protein, kinase; 99.8 1.1E-19 3.9E-24 166.7 13.8 124 41-166 6-130 (140)
36 1jbe_A Chemotaxis protein CHEY 99.8 4.7E-19 1.6E-23 159.8 17.3 122 41-164 4-126 (128)
37 3hdg_A Uncharacterized protein 99.8 1.6E-19 5.6E-24 165.0 14.5 123 40-166 6-128 (137)
38 3i42_A Response regulator rece 99.8 1.2E-19 4.1E-24 163.8 13.4 122 41-165 3-124 (127)
39 1p6q_A CHEY2; chemotaxis, sign 99.8 1.9E-19 6.6E-24 162.5 14.8 121 41-163 6-127 (129)
40 3dzd_A Transcriptional regulat 99.8 7E-20 2.4E-24 199.5 13.9 120 43-166 2-121 (368)
41 1dz3_A Stage 0 sporulation pro 99.8 2.4E-19 8.2E-24 162.7 15.1 123 40-165 1-125 (130)
42 3nhm_A Response regulator; pro 99.8 3.1E-19 1.1E-23 162.1 15.4 122 41-166 4-125 (133)
43 1mvo_A PHOP response regulator 99.8 3.7E-19 1.3E-23 162.1 15.7 123 40-166 2-124 (136)
44 3snk_A Response regulator CHEY 99.8 4E-20 1.4E-24 169.3 9.2 120 40-163 13-133 (135)
45 1i3c_A Response regulator RCP1 99.8 7.3E-19 2.5E-23 164.1 17.9 124 41-164 8-138 (149)
46 3cnb_A DNA-binding response re 99.8 9.6E-19 3.3E-23 160.1 18.3 125 40-166 7-133 (143)
47 3c3m_A Response regulator rece 99.8 4.8E-19 1.6E-23 163.0 16.3 124 41-166 3-126 (138)
48 3ilh_A Two component response 99.8 7.4E-19 2.5E-23 161.5 17.5 127 40-166 8-142 (146)
49 1a04_A Nitrate/nitrite respons 99.8 1.6E-18 5.6E-23 171.5 21.2 125 40-168 4-130 (215)
50 1k66_A Phytochrome response re 99.8 5.3E-19 1.8E-23 162.6 16.5 128 38-165 3-140 (149)
51 1zh2_A KDP operon transcriptio 99.8 6.2E-19 2.1E-23 156.8 15.7 119 41-164 1-119 (121)
52 1kgs_A DRRD, DNA binding respo 99.8 4.6E-19 1.6E-23 176.1 16.4 123 40-166 1-123 (225)
53 1xhf_A DYE resistance, aerobic 99.8 1.4E-18 4.8E-23 155.6 17.7 118 41-163 3-120 (123)
54 4dad_A Putative pilus assembly 99.8 3.5E-19 1.2E-23 164.8 14.0 124 40-165 19-143 (146)
55 3eul_A Possible nitrate/nitrit 99.8 1E-18 3.4E-23 163.1 17.0 126 41-170 15-142 (152)
56 2qxy_A Response regulator; reg 99.8 7.8E-19 2.7E-23 161.5 15.9 122 40-166 3-124 (142)
57 1k68_A Phytochrome response re 99.8 1.3E-18 4.5E-23 158.0 17.2 125 41-165 2-133 (140)
58 2qzj_A Two-component response 99.8 1.1E-18 3.7E-23 160.7 16.8 120 41-165 4-123 (136)
59 3luf_A Two-component system re 99.8 7.1E-19 2.4E-23 181.6 17.1 126 40-166 123-248 (259)
60 2zay_A Response regulator rece 99.8 6.5E-19 2.2E-23 162.9 15.0 124 40-165 7-130 (147)
61 3cu5_A Two component transcrip 99.8 2.4E-19 8.3E-24 166.1 11.8 121 40-164 1-124 (141)
62 2qr3_A Two-component system re 99.8 1.4E-18 4.9E-23 158.7 16.4 123 41-167 3-130 (140)
63 3h5i_A Response regulator/sens 99.8 3.4E-19 1.1E-23 164.4 12.3 121 41-165 5-126 (140)
64 3cg4_A Response regulator rece 99.8 3.9E-19 1.3E-23 163.2 12.2 126 39-166 5-130 (142)
65 3cz5_A Two-component response 99.8 8.6E-19 2.9E-23 163.8 14.7 125 40-168 4-130 (153)
66 3lte_A Response regulator; str 99.8 2.5E-18 8.4E-23 155.9 17.2 123 41-166 6-128 (132)
67 3n53_A Response regulator rece 99.8 2.6E-19 9.1E-24 164.5 10.6 124 41-167 3-126 (140)
68 3n0r_A Response regulator; sig 99.8 1.7E-19 6E-24 189.6 10.5 118 41-165 160-279 (286)
69 3kcn_A Adenylate cyclase homol 99.8 1.7E-18 5.7E-23 161.8 16.0 123 40-166 3-126 (151)
70 1ny5_A Transcriptional regulat 99.8 5.3E-19 1.8E-23 193.6 14.6 120 42-165 1-120 (387)
71 3a10_A Response regulator; pho 99.8 6.7E-19 2.3E-23 156.1 12.4 115 41-161 1-115 (116)
72 1dcf_A ETR1 protein; beta-alph 99.8 2.5E-18 8.5E-23 157.2 16.4 123 41-166 7-132 (136)
73 3q9s_A DNA-binding response re 99.8 1.3E-18 4.6E-23 178.0 16.0 121 41-166 37-157 (249)
74 2rjn_A Response regulator rece 99.8 3.9E-18 1.3E-22 159.5 17.4 122 41-166 7-129 (154)
75 2gkg_A Response regulator homo 99.8 1.7E-18 5.8E-23 154.7 14.2 121 40-163 4-125 (127)
76 1yio_A Response regulatory pro 99.8 1.1E-18 3.6E-23 171.7 13.8 121 41-165 4-124 (208)
77 3cg0_A Response regulator rece 99.8 3.4E-18 1.2E-22 156.2 15.7 121 41-166 9-131 (140)
78 3eq2_A Probable two-component 99.8 1E-18 3.5E-23 190.1 13.8 124 38-165 2-126 (394)
79 1s8n_A Putative antiterminator 99.8 2E-18 6.9E-23 169.8 14.5 122 39-165 11-133 (205)
80 2ayx_A Sensor kinase protein R 99.8 3.1E-18 1.1E-22 176.0 15.4 121 41-165 129-249 (254)
81 1qkk_A DCTD, C4-dicarboxylate 99.8 5.2E-18 1.8E-22 158.8 15.4 122 41-166 3-124 (155)
82 2qsj_A DNA-binding response re 99.8 3.1E-18 1.1E-22 159.9 13.4 126 41-169 3-130 (154)
83 3eqz_A Response regulator; str 99.8 1.6E-18 5.3E-23 157.2 10.7 121 41-166 3-128 (135)
84 2jk1_A HUPR, hydrogenase trans 99.8 8.3E-18 2.8E-22 154.6 15.7 119 42-165 2-121 (139)
85 1p2f_A Response regulator; DRR 99.8 5.4E-18 1.8E-22 168.3 15.3 119 40-165 1-119 (220)
86 2gwr_A DNA-binding response re 99.8 2.9E-18 1E-22 173.0 13.5 124 38-166 2-125 (238)
87 2oqr_A Sensory transduction pr 99.8 3.9E-18 1.3E-22 170.2 14.0 121 40-165 3-123 (230)
88 2qvg_A Two component response 99.8 1.2E-17 4.2E-22 153.4 15.6 123 41-163 7-135 (143)
89 1w25_A Stalked-cell differenti 99.8 8.1E-18 2.8E-22 186.0 16.7 122 42-165 2-123 (459)
90 2rdm_A Response regulator rece 99.8 1.8E-17 6E-22 149.9 16.0 121 41-166 5-126 (132)
91 1ys7_A Transcriptional regulat 99.7 5.6E-18 1.9E-22 169.1 13.3 122 41-166 7-128 (233)
92 3t8y_A CHEB, chemotaxis respon 99.7 1.3E-17 4.6E-22 158.7 15.2 128 32-164 13-156 (164)
93 2qv0_A Protein MRKE; structura 99.7 2.4E-17 8.3E-22 151.6 16.2 120 40-165 8-129 (143)
94 3c97_A Signal transduction his 99.7 8.1E-18 2.8E-22 154.8 12.0 123 40-167 9-134 (140)
95 3c3w_A Two component transcrip 99.7 2.5E-18 8.6E-23 172.5 8.9 123 41-167 1-125 (225)
96 2pln_A HP1043, response regula 99.7 5.9E-17 2E-21 148.2 16.8 118 38-164 15-134 (137)
97 3klo_A Transcriptional regulat 99.7 3.8E-18 1.3E-22 170.7 9.5 125 40-168 6-134 (225)
98 3bre_A Probable two-component 99.7 1.9E-17 6.6E-22 176.5 13.6 121 41-163 18-139 (358)
99 2j48_A Two-component sensor ki 99.7 2.5E-17 8.5E-22 144.4 11.2 116 42-162 2-117 (119)
100 3kyj_B CHEY6 protein, putative 99.7 2.3E-17 7.7E-22 152.7 11.0 112 41-156 13-128 (145)
101 2b4a_A BH3024; flavodoxin-like 99.7 2.6E-17 8.8E-22 150.8 9.4 120 37-164 11-132 (138)
102 3sy8_A ROCR; TIM barrel phosph 99.7 3.9E-17 1.3E-21 178.8 12.3 123 41-166 3-131 (400)
103 1dc7_A NTRC, nitrogen regulati 99.7 9.5E-19 3.3E-23 156.0 -1.2 120 41-164 3-122 (124)
104 1qo0_D AMIR; binding protein, 99.7 6.4E-17 2.2E-21 157.9 10.7 116 41-165 12-127 (196)
105 2hqr_A Putative transcriptiona 99.7 3.6E-16 1.2E-20 155.4 14.0 115 42-164 1-116 (223)
106 1a2o_A CHEB methylesterase; ba 99.6 2.8E-15 9.7E-20 162.1 15.9 119 41-164 3-134 (349)
107 3luf_A Two-component system re 99.6 1.1E-15 3.8E-20 157.7 9.9 103 41-150 4-107 (259)
108 2vyc_A Biodegradative arginine 99.6 2.6E-15 8.8E-20 177.6 9.8 120 43-165 2-135 (755)
109 3cwo_X Beta/alpha-barrel prote 99.1 1.7E-10 5.7E-15 114.7 7.1 95 66-164 6-102 (237)
110 1w25_A Stalked-cell differenti 99.0 4E-09 1.4E-13 116.3 17.3 121 41-165 152-272 (459)
111 3tm8_A BD1817, uncharacterized 98.1 1.6E-06 5.4E-11 92.9 4.9 55 228-289 168-224 (328)
112 2ogi_A Hypothetical protein SA 97.3 6.4E-05 2.2E-09 74.5 2.2 49 227-285 27-76 (196)
113 2o08_A BH1327 protein; putativ 97.3 6.7E-05 2.3E-09 73.8 2.2 49 227-285 19-68 (188)
114 3ccg_A HD superfamily hydrolas 97.3 7E-05 2.4E-09 73.7 1.9 49 228-286 21-70 (190)
115 3n75_A LDC, lysine decarboxyla 97.2 0.00031 1E-08 82.6 7.2 106 53-164 18-124 (715)
116 3q7r_A Transcriptional regulat 97.1 0.0018 6.3E-08 57.4 8.5 107 42-165 13-120 (121)
117 2ayx_A Sensor kinase protein R 96.9 0.0011 3.6E-08 67.5 6.0 96 41-163 11-106 (254)
118 3hc1_A Uncharacterized HDOD do 96.6 0.00047 1.6E-08 72.7 0.8 57 224-289 116-184 (305)
119 2yxb_A Coenzyme B12-dependent 95.7 0.2 6.8E-06 47.9 14.3 120 41-164 18-146 (161)
120 3cwo_X Beta/alpha-barrel prote 95.5 0.028 9.6E-07 55.0 7.8 82 73-158 131-221 (237)
121 3i7a_A Putative metal-dependen 94.7 0.0092 3.1E-07 62.0 1.7 58 224-287 115-176 (281)
122 3ogl_Q JAZ1 incomplete degron 94.6 0.017 5.6E-07 36.9 1.9 19 661-679 3-21 (21)
123 3q58_A N-acetylmannosamine-6-p 92.3 1.1 3.9E-05 45.1 12.3 89 51-146 115-210 (229)
124 1wv2_A Thiazole moeity, thiazo 91.7 1.3 4.3E-05 45.8 11.8 99 57-162 127-237 (265)
125 3ogk_Q JAZ1 incomplete degron 91.6 0.05 1.7E-06 35.2 0.8 19 664-682 1-19 (22)
126 1ccw_A Protein (glutamate muta 90.7 2.6 8.8E-05 38.9 12.0 115 43-161 5-134 (137)
127 2pq7_A Predicted HD superfamil 90.3 0.14 4.8E-06 51.0 3.1 37 227-273 34-70 (220)
128 3igs_A N-acetylmannosamine-6-p 90.2 2.7 9.3E-05 42.3 12.6 89 51-146 115-210 (232)
129 1vqr_A Hypothetical protein CJ 89.4 0.05 1.7E-06 56.8 -1.1 45 225-278 123-167 (297)
130 1y80_A Predicted cobalamin bin 89.2 1.6 5.4E-05 43.0 9.8 100 41-145 88-196 (210)
131 3b57_A LIN1889 protein; Q92AN1 89.2 0.2 6.8E-06 49.7 3.2 38 227-274 26-63 (209)
132 2hek_A Hypothetical protein; p 89.0 0.3 1E-05 53.0 4.7 42 227-277 51-92 (371)
133 2i2x_B MTAC, methyltransferase 88.9 4.1 0.00014 41.6 13.0 112 41-162 123-243 (258)
134 3m1t_A Putative phosphohydrola 88.5 0.12 4.2E-06 53.3 1.2 43 224-276 103-145 (275)
135 3dto_A BH2835 protein; all alp 88.4 0.21 7E-06 50.5 2.7 39 227-275 26-64 (223)
136 2pjq_A Uncharacterized protein 88.0 0.15 5E-06 51.6 1.4 38 227-274 31-68 (231)
137 3ljx_A MMOQ response regulator 87.7 0.15 5.3E-06 53.0 1.3 44 224-276 106-149 (288)
138 3mem_A Putative signal transdu 87.5 0.16 5.6E-06 56.4 1.5 46 224-276 276-322 (457)
139 3ezx_A MMCP 1, monomethylamine 87.5 2.1 7.3E-05 42.6 9.5 100 41-145 92-202 (215)
140 2qgs_A Protein Se1688; alpha-h 87.3 0.32 1.1E-05 48.9 3.3 38 227-274 26-64 (225)
141 3fkq_A NTRC-like two-domain pr 85.9 4.5 0.00015 43.2 11.7 108 36-161 16-126 (373)
142 3djb_A Hydrolase, HD family; a 85.7 0.24 8.3E-06 49.9 1.5 40 227-276 26-65 (223)
143 3gw7_A Uncharacterized protein 85.3 0.32 1.1E-05 49.6 2.2 37 228-274 27-63 (239)
144 2htm_A Thiazole biosynthesis p 85.2 1.8 6.1E-05 44.8 7.6 99 58-162 117-228 (268)
145 3kp1_A D-ornithine aminomutase 85.2 3.6 0.00012 47.4 10.7 122 38-164 599-736 (763)
146 1xrs_B D-lysine 5,6-aminomutas 84.0 7.8 0.00027 40.0 11.9 117 41-162 120-257 (262)
147 3qja_A IGPS, indole-3-glycerol 83.5 11 0.00037 39.0 12.8 99 43-146 138-242 (272)
148 2q14_A Phosphohydrolase; BT420 82.5 0.63 2.1E-05 51.2 3.1 43 228-277 57-104 (410)
149 2dqb_A Deoxyguanosinetriphosph 80.3 0.93 3.2E-05 49.3 3.4 38 229-276 78-115 (376)
150 2ekc_A AQ_1548, tryptophan syn 79.0 7 0.00024 39.9 9.4 59 102-162 81-145 (262)
151 3f4w_A Putative hexulose 6 pho 78.4 22 0.00075 34.3 12.5 115 43-162 79-208 (211)
152 2xij_A Methylmalonyl-COA mutas 78.3 14 0.00047 43.7 12.5 119 41-163 604-731 (762)
153 3o63_A Probable thiamine-phosp 77.8 12 0.00042 37.9 10.7 87 70-161 141-239 (243)
154 3rht_A (gatase1)-like protein; 77.5 1.2 4.2E-05 45.9 3.2 79 41-127 4-89 (259)
155 1req_A Methylmalonyl-COA mutas 76.7 12 0.00041 43.9 11.5 118 41-162 596-722 (727)
156 3ffs_A Inosine-5-monophosphate 76.4 24 0.00082 38.5 13.2 103 41-146 156-275 (400)
157 2q5c_A NTRC family transcripti 75.6 26 0.00088 34.2 12.0 121 40-163 3-141 (196)
158 3vnd_A TSA, tryptophan synthas 75.0 5.7 0.00019 41.0 7.4 58 103-162 83-146 (267)
159 2paq_A 5'-deoxynucleotidase YF 73.9 1.5 5.1E-05 43.5 2.5 47 225-279 30-80 (201)
160 1yad_A Regulatory protein TENI 73.7 13 0.00045 36.4 9.5 74 65-145 110-191 (221)
161 1qop_A Tryptophan synthase alp 73.7 7.4 0.00025 39.8 7.9 59 102-162 81-145 (268)
162 2v82_A 2-dehydro-3-deoxy-6-pho 73.6 13 0.00044 36.1 9.3 79 59-146 95-176 (212)
163 1geq_A Tryptophan synthase alp 73.5 8.9 0.0003 38.2 8.3 55 102-159 68-128 (248)
164 1r8j_A KAIA; circadian clock p 72.7 20 0.00068 37.1 10.4 121 41-165 9-131 (289)
165 3kq5_A Hypothetical cytosolic 72.7 2 6.9E-05 46.6 3.4 47 223-275 72-119 (393)
166 3rf0_A Exopolyphosphatase; str 71.8 2.4 8.2E-05 42.0 3.5 47 225-277 18-69 (209)
167 1xi3_A Thiamine phosphate pyro 71.1 22 0.00077 34.1 10.4 70 70-146 114-190 (215)
168 4fo4_A Inosine 5'-monophosphat 68.7 45 0.0015 35.8 12.9 102 41-146 120-240 (366)
169 2l69_A Rossmann 2X3 fold prote 68.4 35 0.0012 29.8 9.5 44 40-83 1-44 (134)
170 2gjl_A Hypothetical protein PA 66.3 47 0.0016 34.5 12.3 83 58-146 111-201 (328)
171 3tsm_A IGPS, indole-3-glycerol 66.2 43 0.0015 34.6 11.7 89 53-146 157-249 (272)
172 1xm3_A Thiazole biosynthesis p 66.1 22 0.00075 36.2 9.5 76 65-146 126-207 (264)
173 1y0e_A Putative N-acetylmannos 65.3 43 0.0015 32.5 11.1 88 53-146 106-204 (223)
174 2bfw_A GLGA glycogen synthase; 64.8 70 0.0024 29.5 12.2 106 41-162 70-179 (200)
175 3khj_A Inosine-5-monophosphate 64.2 48 0.0016 35.5 12.0 102 42-146 118-236 (361)
176 3bo9_A Putative nitroalkan dio 64.2 39 0.0013 35.4 11.2 82 59-146 118-205 (326)
177 2oo3_A Protein involved in cat 63.9 9.7 0.00033 39.7 6.3 71 42-112 114-185 (283)
178 3nav_A Tryptophan synthase alp 63.7 8.5 0.00029 39.8 5.8 57 102-160 84-146 (271)
179 1mu5_A Type II DNA topoisomera 63.3 2.2 7.5E-05 47.7 1.3 110 2-113 123-247 (471)
180 2v5j_A 2,4-dihydroxyhept-2-ENE 62.8 84 0.0029 32.4 13.2 100 57-159 30-132 (287)
181 4gud_A Imidazole glycerol phos 61.4 16 0.00055 35.3 7.1 46 40-93 1-46 (211)
182 3mz0_A Inositol 2-dehydrogenas 61.3 32 0.0011 35.8 9.9 109 40-164 1-117 (344)
183 3bw2_A 2-nitropropane dioxygen 60.8 55 0.0019 34.7 11.8 78 62-145 142-236 (369)
184 2vws_A YFAU, 2-keto-3-deoxy su 60.6 1.1E+02 0.0036 31.2 13.4 101 57-160 9-112 (267)
185 3bul_A Methionine synthase; tr 59.7 27 0.00092 40.0 9.4 101 41-145 98-210 (579)
186 2z6i_A Trans-2-enoyl-ACP reduc 59.2 58 0.002 34.1 11.4 80 60-145 105-190 (332)
187 1h1y_A D-ribulose-5-phosphate 58.6 26 0.00088 34.6 8.1 86 58-146 106-201 (228)
188 3ezy_A Dehydrogenase; structur 58.3 33 0.0011 35.7 9.4 109 40-164 1-115 (344)
189 4hkt_A Inositol 2-dehydrogenas 58.3 48 0.0017 34.1 10.6 107 40-164 2-114 (331)
190 3usb_A Inosine-5'-monophosphat 57.9 96 0.0033 34.6 13.6 103 41-146 268-388 (511)
191 1ujp_A Tryptophan synthase alp 57.8 16 0.00056 37.5 6.7 57 103-162 80-142 (271)
192 2gek_A Phosphatidylinositol ma 57.2 49 0.0017 34.0 10.5 107 42-163 241-349 (406)
193 1eep_A Inosine 5'-monophosphat 56.9 78 0.0027 34.0 12.3 92 51-145 179-284 (404)
194 4e5v_A Putative THUA-like prot 56.7 9.1 0.00031 39.7 4.5 76 41-124 4-93 (281)
195 2c6q_A GMP reductase 2; TIM ba 56.2 1.2E+02 0.0042 32.1 13.4 103 42-148 133-255 (351)
196 2lci_A Protein OR36; structura 55.3 27 0.00091 30.5 6.5 39 44-82 80-118 (134)
197 1ka9_F Imidazole glycerol phos 55.3 61 0.0021 31.9 10.4 68 88-158 166-243 (252)
198 1dxe_A 2-dehydro-3-deoxy-galac 55.2 1.3E+02 0.0043 30.3 12.8 100 57-159 10-112 (256)
199 3rc1_A Sugar 3-ketoreductase; 55.2 65 0.0022 33.7 11.1 109 39-164 25-140 (350)
200 4e38_A Keto-hydroxyglutarate-a 54.6 25 0.00085 35.5 7.2 94 57-156 27-122 (232)
201 4dzz_A Plasmid partitioning pr 54.1 22 0.00075 33.4 6.5 69 38-111 27-97 (206)
202 3ic5_A Putative saccharopine d 53.2 50 0.0017 27.7 8.2 91 40-143 4-97 (118)
203 4avf_A Inosine-5'-monophosphat 53.2 1.6E+02 0.0056 32.5 14.4 101 42-146 242-361 (490)
204 3ovp_A Ribulose-phosphate 3-ep 53.1 35 0.0012 34.0 8.1 83 58-146 105-197 (228)
205 3l4e_A Uncharacterized peptida 53.1 49 0.0017 32.4 9.0 64 41-112 27-100 (206)
206 3qz6_A HPCH/HPAI aldolase; str 52.0 86 0.0029 31.8 11.0 101 57-160 6-110 (261)
207 2f9f_A First mannosyl transfer 52.0 89 0.003 28.6 10.3 108 41-164 50-163 (177)
208 2tps_A Protein (thiamin phosph 51.7 38 0.0013 32.8 8.0 70 71-146 123-200 (227)
209 1ka9_F Imidazole glycerol phos 51.5 48 0.0016 32.7 8.8 70 72-146 31-104 (252)
210 3u3x_A Oxidoreductase; structu 51.3 44 0.0015 35.2 9.0 108 41-164 26-139 (361)
211 3irh_A HD domain protein; phos 51.0 7.3 0.00025 43.5 2.9 43 228-276 88-141 (480)
212 2cqz_A 177AA long hypothetical 50.8 8.8 0.0003 36.9 3.1 42 225-275 31-76 (177)
213 3usb_A Inosine-5'-monophosphat 50.6 77 0.0026 35.4 11.2 67 74-145 257-324 (511)
214 3r2g_A Inosine 5'-monophosphat 50.5 2E+02 0.0068 30.7 14.0 98 41-146 112-228 (361)
215 3ohs_X Trans-1,2-dihydrobenzen 50.5 50 0.0017 34.1 9.1 108 40-164 1-117 (334)
216 2w6r_A Imidazole glycerol phos 50.4 50 0.0017 32.9 8.9 67 74-146 158-229 (266)
217 3fro_A GLGA glycogen synthase; 50.0 1.3E+02 0.0045 30.9 12.4 107 41-162 285-394 (439)
218 3ajx_A 3-hexulose-6-phosphate 50.0 14 0.00049 35.5 4.5 84 72-160 10-99 (207)
219 3s83_A Ggdef family protein; s 49.9 58 0.002 32.2 9.2 101 56-159 143-254 (259)
220 4adt_A Pyridoxine biosynthetic 49.8 1.1E+02 0.0039 31.8 11.6 60 102-164 195-261 (297)
221 1thf_D HISF protein; thermophI 49.6 1.1E+02 0.0036 30.2 11.1 79 74-157 153-241 (253)
222 3hi0_A Putative exopolyphospha 49.1 8 0.00027 43.4 2.8 48 226-278 331-378 (508)
223 3fwz_A Inner membrane protein 48.9 98 0.0033 27.5 9.8 95 40-145 29-124 (140)
224 3beo_A UDP-N-acetylglucosamine 48.6 1.4E+02 0.0048 30.2 12.2 70 74-163 273-342 (375)
225 2p10_A MLL9387 protein; putati 48.4 91 0.0031 32.5 10.4 80 63-147 161-260 (286)
226 3sk9_A Putative uncharacterize 48.2 15 0.0005 37.9 4.5 42 227-274 26-79 (265)
227 3e9m_A Oxidoreductase, GFO/IDH 48.1 43 0.0015 34.6 8.2 111 40-164 4-118 (330)
228 1rd5_A Tryptophan synthase alp 47.6 34 0.0011 34.4 7.0 43 102-147 189-231 (262)
229 1wa3_A 2-keto-3-deoxy-6-phosph 47.5 26 0.00089 33.6 6.0 65 73-145 113-177 (205)
230 1h5y_A HISF; histidine biosynt 47.3 87 0.003 30.3 9.9 80 74-158 156-245 (253)
231 3ec7_A Putative dehydrogenase; 47.2 67 0.0023 33.7 9.6 112 39-164 21-138 (357)
232 2w6r_A Imidazole glycerol phos 46.9 38 0.0013 33.8 7.3 70 73-147 31-104 (266)
233 4fxs_A Inosine-5'-monophosphat 46.9 44 0.0015 37.3 8.5 66 74-145 233-299 (496)
234 3m5f_A Metal dependent phospho 46.9 12 0.00041 38.2 3.5 43 227-274 17-71 (244)
235 3c48_A Predicted glycosyltrans 46.8 73 0.0025 33.3 9.9 107 42-162 277-390 (438)
236 3snr_A Extracellular ligand-bi 46.8 58 0.002 32.9 8.8 85 42-132 136-231 (362)
237 1yxy_A Putative N-acetylmannos 46.1 96 0.0033 30.2 10.0 86 53-146 120-215 (234)
238 1ep3_A Dihydroorotate dehydrog 46.0 1.1E+02 0.0037 31.1 10.8 106 52-162 151-292 (311)
239 3moi_A Probable dehydrogenase; 46.0 34 0.0012 36.4 7.1 110 40-164 1-115 (387)
240 3u1n_A SAM domain and HD domai 45.6 9.6 0.00033 43.1 2.7 51 228-279 67-118 (528)
241 2fhp_A Methylase, putative; al 45.5 1.1E+02 0.0037 27.8 9.8 69 42-110 68-139 (187)
242 1geq_A Tryptophan synthase alp 45.3 58 0.002 32.1 8.3 83 57-146 125-220 (248)
243 1rd5_A Tryptophan synthase alp 44.9 30 0.001 34.8 6.1 56 102-161 82-140 (262)
244 2yw3_A 4-hydroxy-2-oxoglutarat 44.6 1.2E+02 0.0042 29.4 10.4 91 64-163 103-200 (207)
245 3e18_A Oxidoreductase; dehydro 44.5 58 0.002 34.2 8.6 106 41-164 5-116 (359)
246 4had_A Probable oxidoreductase 44.4 62 0.0021 33.5 8.7 111 38-164 20-137 (350)
247 3o9z_A Lipopolysaccaride biosy 44.4 30 0.001 35.8 6.2 113 41-165 3-124 (312)
248 3aon_B V-type sodium ATPase su 44.3 21 0.00074 32.1 4.4 73 40-123 1-75 (115)
249 1xea_A Oxidoreductase, GFO/IDH 43.9 74 0.0025 32.6 9.1 107 40-162 1-112 (323)
250 2ho3_A Oxidoreductase, GFO/IDH 43.8 1E+02 0.0035 31.6 10.2 107 41-163 1-112 (325)
251 2fli_A Ribulose-phosphate 3-ep 43.8 24 0.0008 34.2 5.0 86 57-146 101-198 (220)
252 3f4w_A Putative hexulose 6 pho 43.8 28 0.00094 33.5 5.5 85 72-160 10-99 (211)
253 1jcn_A Inosine monophosphate d 43.5 1.2E+02 0.0043 33.5 11.5 89 51-145 281-386 (514)
254 2yxd_A Probable cobalt-precorr 42.7 1.7E+02 0.0058 26.1 10.6 73 41-124 57-131 (183)
255 4avf_A Inosine-5'-monophosphat 42.5 72 0.0025 35.5 9.3 66 75-145 231-297 (490)
256 3iwp_A Copper homeostasis prot 42.1 1E+02 0.0035 32.1 9.6 91 66-160 40-151 (287)
257 3euw_A MYO-inositol dehydrogen 41.8 1E+02 0.0035 31.8 9.9 106 41-162 4-114 (344)
258 1qdl_B Protein (anthranilate s 41.7 16 0.00055 35.1 3.4 77 44-125 4-85 (195)
259 3lab_A Putative KDPG (2-keto-3 41.1 66 0.0023 32.1 7.8 82 68-155 18-100 (217)
260 3m2t_A Probable dehydrogenase; 40.9 53 0.0018 34.5 7.6 109 41-164 5-119 (359)
261 1izc_A Macrophomate synthase i 40.3 2.6E+02 0.0089 29.5 12.8 87 71-160 50-139 (339)
262 4fyk_A Deoxyribonucleoside 5'- 40.3 92 0.0032 29.3 8.3 112 41-163 2-142 (152)
263 1rpx_A Protein (ribulose-phosp 40.2 24 0.00084 34.6 4.5 59 87-146 140-207 (230)
264 1p0k_A Isopentenyl-diphosphate 40.2 2.2E+02 0.0075 29.7 12.2 89 53-146 166-280 (349)
265 3q2i_A Dehydrogenase; rossmann 40.0 1.4E+02 0.0048 30.9 10.7 108 40-164 12-126 (354)
266 2fn9_A Ribose ABC transporter, 39.9 1.9E+02 0.0064 28.2 11.2 67 53-126 20-92 (290)
267 3inp_A D-ribulose-phosphate 3- 39.9 61 0.0021 32.9 7.5 85 73-161 41-131 (246)
268 2xxa_A Signal recognition part 39.8 51 0.0017 36.1 7.4 53 41-95 129-191 (433)
269 4eyg_A Twin-arginine transloca 39.5 1.4E+02 0.0049 30.1 10.5 66 54-123 156-229 (368)
270 3sc6_A DTDP-4-dehydrorhamnose 39.0 66 0.0022 31.8 7.6 81 40-126 4-107 (287)
271 3p9n_A Possible methyltransfer 38.8 1.4E+02 0.0047 27.6 9.4 82 42-125 68-154 (189)
272 3czc_A RMPB; alpha/beta sandwi 38.7 1.8E+02 0.006 25.3 9.5 81 41-136 18-105 (110)
273 1u6z_A Exopolyphosphatase; alp 38.7 14 0.00049 41.4 2.8 47 225-275 327-376 (513)
274 3i23_A Oxidoreductase, GFO/IDH 38.7 43 0.0015 35.0 6.4 110 40-164 1-116 (349)
275 3axs_A Probable N(2),N(2)-dime 38.4 1E+02 0.0034 33.4 9.4 91 42-141 78-179 (392)
276 2fpo_A Methylase YHHF; structu 38.4 93 0.0032 29.5 8.3 67 42-111 78-146 (202)
277 3jy6_A Transcriptional regulat 38.4 1.2E+02 0.004 29.6 9.3 65 53-127 25-95 (276)
278 3r2g_A Inosine 5'-monophosphat 38.3 85 0.0029 33.7 8.7 65 76-145 103-168 (361)
279 4a29_A Engineered retro-aldol 38.3 3.4E+02 0.012 27.7 12.8 89 53-146 141-233 (258)
280 1rzu_A Glycogen synthase 1; gl 38.0 2.2E+02 0.0074 30.3 12.0 108 41-162 320-439 (485)
281 3pfn_A NAD kinase; structural 38.0 70 0.0024 34.4 7.9 110 32-165 33-166 (365)
282 3o07_A Pyridoxine biosynthesis 37.8 1E+02 0.0035 32.1 8.7 61 102-165 186-253 (291)
283 2qfm_A Spermine synthase; sper 37.7 83 0.0028 33.8 8.5 68 42-109 212-296 (364)
284 2dul_A N(2),N(2)-dimethylguano 37.7 95 0.0032 33.2 9.0 77 42-126 72-165 (378)
285 1h5y_A HISF; histidine biosynt 37.7 88 0.003 30.3 8.2 70 72-146 33-106 (253)
286 1zh8_A Oxidoreductase; TM0312, 37.6 1.6E+02 0.0054 30.5 10.6 109 40-164 17-133 (340)
287 1qop_A Tryptophan synthase alp 37.6 1E+02 0.0035 31.2 8.8 42 103-147 194-235 (268)
288 3cea_A MYO-inositol 2-dehydrog 37.6 90 0.0031 32.1 8.6 109 40-163 7-121 (346)
289 3duw_A OMT, O-methyltransferas 37.4 2.7E+02 0.0091 26.2 11.6 79 42-124 84-166 (223)
290 1vc4_A Indole-3-glycerol phosp 37.3 57 0.002 33.0 6.8 88 55-146 141-236 (254)
291 3db2_A Putative NADPH-dependen 37.0 77 0.0026 33.0 8.0 107 40-164 4-117 (354)
292 3td9_A Branched chain amino ac 36.8 1.7E+02 0.0059 29.6 10.7 81 42-128 150-241 (366)
293 3dty_A Oxidoreductase, GFO/IDH 36.8 1.3E+02 0.0045 31.8 10.0 113 41-164 12-136 (398)
294 1uf3_A Hypothetical protein TT 36.7 70 0.0024 30.1 7.1 70 37-129 1-75 (228)
295 2qzs_A Glycogen synthase; glyc 36.6 1.8E+02 0.0061 30.9 11.1 108 41-162 321-440 (485)
296 3evn_A Oxidoreductase, GFO/IDH 36.4 32 0.0011 35.6 4.9 109 40-164 4-118 (329)
297 2iw1_A Lipopolysaccharide core 36.4 1.2E+02 0.0042 30.6 9.4 106 42-163 229-337 (374)
298 1v4v_A UDP-N-acetylglucosamine 36.2 2E+02 0.0068 29.3 11.0 59 88-162 275-333 (376)
299 4e38_A Keto-hydroxyglutarate-a 36.1 2.1E+02 0.0071 28.7 10.7 73 64-145 126-201 (232)
300 1b3q_A Protein (chemotaxis pro 36.1 6 0.0002 42.4 -0.8 22 1-22 224-249 (379)
301 1gox_A (S)-2-hydroxy-acid oxid 36.0 1.6E+02 0.0056 31.2 10.5 88 55-146 215-309 (370)
302 2ift_A Putative methylase HI07 35.8 60 0.0021 30.8 6.4 68 42-111 77-149 (201)
303 1tqj_A Ribulose-phosphate 3-ep 35.7 50 0.0017 32.8 6.0 85 73-163 18-111 (230)
304 1thf_D HISF protein; thermophI 35.7 1.5E+02 0.005 29.1 9.5 70 73-147 31-104 (253)
305 1z0s_A Probable inorganic poly 35.6 25 0.00085 36.5 3.8 102 32-162 21-122 (278)
306 3l9w_A Glutathione-regulated p 35.6 52 0.0018 35.8 6.6 96 40-146 26-122 (413)
307 1vgv_A UDP-N-acetylglucosamine 35.6 1.2E+02 0.0042 30.8 9.3 41 117-162 301-341 (384)
308 1j8m_F SRP54, signal recogniti 35.5 55 0.0019 33.8 6.5 54 40-95 125-188 (297)
309 1wl8_A GMP synthase [glutamine 35.3 29 0.001 32.9 4.1 76 44-124 3-79 (189)
310 1tqx_A D-ribulose-5-phosphate 35.2 59 0.002 32.4 6.5 84 60-147 109-202 (227)
311 2nli_A Lactate oxidase; flavoe 35.0 1.5E+02 0.0052 31.5 10.1 89 54-146 218-313 (368)
312 2r60_A Glycosyl transferase, g 34.9 1.7E+02 0.0057 31.4 10.5 95 54-162 321-423 (499)
313 3dr5_A Putative O-methyltransf 34.4 78 0.0027 30.8 7.1 67 42-112 82-152 (221)
314 1ka9_H Imidazole glycerol phos 34.3 39 0.0014 32.3 4.9 34 40-73 1-34 (200)
315 3tdn_A FLR symmetric alpha-bet 34.2 1E+02 0.0035 30.4 8.0 69 73-146 36-108 (247)
316 1qo2_A Molecule: N-((5-phospho 34.1 1.2E+02 0.004 29.8 8.5 78 73-156 145-239 (241)
317 4fxs_A Inosine-5'-monophosphat 34.1 3.7E+02 0.013 29.7 13.4 102 42-146 244-363 (496)
318 3lkb_A Probable branched-chain 34.1 2.2E+02 0.0075 29.2 11.0 84 42-131 144-238 (392)
319 2nvw_A Galactose/lactose metab 34.0 1.5E+02 0.0052 32.6 10.1 113 35-163 32-164 (479)
320 1i1q_B Anthranilate synthase c 34.0 75 0.0026 30.1 6.8 77 42-124 1-83 (192)
321 1vzw_A Phosphoribosyl isomeras 33.9 1.5E+02 0.0052 28.9 9.3 79 73-156 147-238 (244)
322 3ceu_A Thiamine phosphate pyro 33.8 45 0.0015 32.4 5.2 70 70-145 94-171 (210)
323 3e82_A Putative oxidoreductase 33.7 1.2E+02 0.004 31.8 8.9 107 40-164 6-118 (364)
324 1ypf_A GMP reductase; GUAC, pu 33.4 2.3E+02 0.008 29.5 11.1 97 42-145 121-238 (336)
325 1sui_A Caffeoyl-COA O-methyltr 33.4 1.9E+02 0.0065 28.4 10.0 69 42-112 105-179 (247)
326 3sgz_A Hydroxyacid oxidase 2; 33.2 2.2E+02 0.0074 30.4 10.8 88 55-146 207-301 (352)
327 3okp_A GDP-mannose-dependent a 33.1 93 0.0032 31.7 7.8 79 70-162 259-343 (394)
328 3v5n_A Oxidoreductase; structu 33.1 1.7E+02 0.0059 31.2 10.2 115 41-164 37-161 (417)
329 4fo4_A Inosine 5'-monophosphat 32.7 2E+02 0.0067 30.8 10.4 66 75-145 110-176 (366)
330 2avd_A Catechol-O-methyltransf 32.7 1.7E+02 0.0059 27.6 9.3 69 42-112 95-168 (229)
331 2d00_A V-type ATP synthase sub 32.7 1.7E+02 0.0057 25.8 8.3 74 42-124 4-79 (109)
332 3oa2_A WBPB; oxidoreductase, s 32.6 70 0.0024 33.1 6.8 112 41-164 3-124 (318)
333 1vrd_A Inosine-5'-monophosphat 32.5 3.1E+02 0.011 30.0 12.4 91 52-145 264-368 (494)
334 3c3y_A Pfomt, O-methyltransfer 32.3 1.7E+02 0.0057 28.5 9.2 69 42-112 96-170 (237)
335 3m2p_A UDP-N-acetylglucosamine 32.2 2.2E+02 0.0076 28.3 10.4 32 40-71 1-32 (311)
336 1ws6_A Methyltransferase; stru 32.2 1.2E+02 0.0042 26.9 7.7 68 42-110 64-132 (171)
337 3tfw_A Putative O-methyltransf 32.1 1.9E+02 0.0065 28.3 9.7 78 42-124 89-169 (248)
338 3u81_A Catechol O-methyltransf 32.0 52 0.0018 31.6 5.3 69 41-109 83-157 (221)
339 3ot5_A UDP-N-acetylglucosamine 32.0 2.2E+02 0.0075 30.2 10.8 42 116-162 319-360 (403)
340 3iwp_A Copper homeostasis prot 31.9 1.1E+02 0.0037 31.9 7.9 91 51-145 138-237 (287)
341 3gdo_A Uncharacterized oxidore 31.9 1.4E+02 0.0049 31.0 9.2 107 41-164 5-116 (358)
342 3gjy_A Spermidine synthase; AP 31.6 72 0.0024 33.6 6.6 70 42-113 114-190 (317)
343 2y88_A Phosphoribosyl isomeras 31.5 1.2E+02 0.0039 29.7 7.9 77 74-155 151-240 (244)
344 4gnr_A ABC transporter substra 31.4 2.5E+02 0.0084 28.3 10.7 88 43-136 146-241 (353)
345 3ip3_A Oxidoreductase, putativ 31.2 61 0.0021 33.6 6.0 107 40-164 1-118 (337)
346 3uuw_A Putative oxidoreductase 31.2 84 0.0029 31.9 7.0 107 41-164 6-117 (308)
347 3k4h_A Putative transcriptiona 31.2 1.3E+02 0.0043 29.5 8.2 67 52-127 30-102 (292)
348 1ydw_A AX110P-like protein; st 31.0 2.2E+02 0.0076 29.5 10.4 111 41-164 6-122 (362)
349 2xci_A KDO-transferase, 3-deox 31.0 74 0.0025 33.4 6.7 110 42-163 226-346 (374)
350 3sg0_A Extracellular ligand-bi 30.9 1.1E+02 0.0039 31.0 8.1 83 43-131 161-254 (386)
351 3tr6_A O-methyltransferase; ce 30.9 1.9E+02 0.0064 27.3 9.1 70 41-112 89-163 (225)
352 2pju_A Propionate catabolism o 30.8 4E+02 0.014 26.3 14.7 121 41-164 12-154 (225)
353 2iuy_A Avigt4, glycosyltransfe 30.7 97 0.0033 31.2 7.4 57 41-99 3-96 (342)
354 3b0p_A TRNA-dihydrouridine syn 30.7 2.3E+02 0.008 29.7 10.6 91 50-145 111-224 (350)
355 2bdq_A Copper homeostasis prot 30.6 1.5E+02 0.005 29.8 8.3 94 49-146 101-207 (224)
356 3tqv_A Nicotinate-nucleotide p 30.5 98 0.0034 32.2 7.3 53 104-160 187-239 (287)
357 4gj1_A 1-(5-phosphoribosyl)-5- 30.4 2.6E+02 0.009 27.7 10.4 79 74-156 153-240 (243)
358 3oqb_A Oxidoreductase; structu 30.4 1.5E+02 0.005 31.1 9.0 39 126-164 94-134 (383)
359 3d54_D Phosphoribosylformylgly 30.1 37 0.0013 32.6 3.9 34 40-73 1-35 (213)
360 2hnk_A SAM-dependent O-methylt 30.0 1.7E+02 0.0059 28.1 8.9 69 42-112 86-170 (239)
361 3qk7_A Transcriptional regulat 30.0 1.4E+02 0.0049 29.4 8.4 65 53-126 28-97 (294)
362 1i4n_A Indole-3-glycerol phosp 29.9 2.5E+02 0.0086 28.4 10.2 89 53-146 138-230 (251)
363 2px0_A Flagellar biosynthesis 29.9 72 0.0025 32.8 6.3 91 41-134 134-231 (296)
364 3qhp_A Type 1 capsular polysac 29.5 1.8E+02 0.0061 25.7 8.3 107 41-163 32-140 (166)
365 1ujp_A Tryptophan synthase alp 29.5 1.3E+02 0.0044 30.8 8.0 40 103-147 191-230 (271)
366 3cbg_A O-methyltransferase; cy 29.5 2.5E+02 0.0084 27.1 9.9 69 42-112 98-171 (232)
367 1x1o_A Nicotinate-nucleotide p 29.2 3E+02 0.01 28.4 10.7 90 44-143 169-265 (286)
368 3inp_A D-ribulose-phosphate 3- 29.2 75 0.0026 32.2 6.1 58 88-146 157-223 (246)
369 3vk5_A MOEO5; TIM barrel, tran 29.1 1.2E+02 0.0041 31.6 7.6 58 88-147 200-257 (286)
370 2pgs_A Putative deoxyguanosine 28.7 29 0.00099 38.5 3.1 48 228-276 64-116 (451)
371 3paj_A Nicotinate-nucleotide p 28.6 1.7E+02 0.0058 30.9 8.8 92 43-144 204-301 (320)
372 2p9j_A Hypothetical protein AQ 28.5 1.6E+02 0.0056 26.1 7.9 41 103-147 42-82 (162)
373 1g5t_A COB(I)alamin adenosyltr 28.3 86 0.0029 30.7 6.1 46 86-134 119-169 (196)
374 1iow_A DD-ligase, DDLB, D-ALA\ 28.2 31 0.0011 34.6 3.1 54 40-95 1-62 (306)
375 2ixa_A Alpha-N-acetylgalactosa 28.2 1.9E+02 0.0065 31.1 9.6 116 40-164 19-142 (444)
376 2nzl_A Hydroxyacid oxidase 1; 28.2 1.7E+02 0.0057 31.6 9.0 88 55-146 242-336 (392)
377 3oti_A CALG3; calicheamicin, T 28.2 1.3E+02 0.0045 31.1 8.1 43 39-83 18-64 (398)
378 3jr2_A Hexulose-6-phosphate sy 28.2 42 0.0014 32.8 3.9 86 71-160 15-105 (218)
379 3l0g_A Nicotinate-nucleotide p 28.1 95 0.0032 32.5 6.7 92 43-144 180-277 (300)
380 4fzr_A SSFS6; structural genom 28.1 1.2E+02 0.004 31.6 7.6 73 41-124 15-151 (398)
381 2khz_A C-MYC-responsive protei 28.0 79 0.0027 29.8 5.7 113 41-164 11-152 (165)
382 3sr7_A Isopentenyl-diphosphate 28.0 3.5E+02 0.012 28.8 11.4 90 52-146 193-307 (365)
383 3l0g_A Nicotinate-nucleotide p 27.9 1.3E+02 0.0045 31.5 7.7 53 104-160 196-248 (300)
384 2f6u_A GGGPS, (S)-3-O-geranylg 27.8 1E+02 0.0035 31.0 6.7 60 75-145 23-83 (234)
385 2i7c_A Spermidine synthase; tr 27.8 1.9E+02 0.0066 29.1 9.0 68 42-113 103-182 (283)
386 3rot_A ABC sugar transporter, 27.7 1.3E+02 0.0046 29.6 7.7 68 53-127 21-96 (297)
387 3bg2_A DGTP triphosphohydrolas 27.7 34 0.0012 37.8 3.4 48 228-276 66-123 (444)
388 1ynb_A Hypothetical protein AF 27.7 30 0.001 33.3 2.7 45 225-276 37-81 (173)
389 3huu_A Transcription regulator 27.6 2.1E+02 0.0073 28.2 9.3 65 53-126 45-115 (305)
390 1twd_A Copper homeostasis prot 27.6 2.1E+02 0.0072 29.3 9.0 90 49-144 98-196 (256)
391 3ius_A Uncharacterized conserv 27.5 42 0.0015 33.2 3.9 34 39-73 3-36 (286)
392 1jcn_A Inosine monophosphate d 27.4 1.8E+02 0.006 32.2 9.3 66 75-145 257-323 (514)
393 3hm2_A Precorrin-6Y C5,15-meth 27.4 1.5E+02 0.0051 26.6 7.4 75 41-122 49-125 (178)
394 3tqv_A Nicotinate-nucleotide p 27.4 1.2E+02 0.0043 31.4 7.4 92 43-144 171-268 (287)
395 1wa3_A 2-keto-3-deoxy-6-phosph 27.3 2.7E+02 0.0092 26.3 9.5 93 61-158 7-101 (205)
396 2r6o_A Putative diguanylate cy 27.3 78 0.0027 32.5 6.0 101 56-159 167-278 (294)
397 3iwt_A 178AA long hypothetical 27.1 1.4E+02 0.0049 27.9 7.4 45 51-95 39-89 (178)
398 3kts_A Glycerol uptake operon 27.1 83 0.0028 30.8 5.7 62 76-146 118-179 (192)
399 2ibn_A Inositol oxygenase; red 26.9 41 0.0014 34.3 3.5 40 222-275 54-94 (250)
400 1l3i_A Precorrin-6Y methyltran 26.8 1.3E+02 0.0045 27.1 6.9 65 42-112 56-123 (192)
401 1k1e_A Deoxy-D-mannose-octulos 26.6 3.7E+02 0.013 24.5 10.2 49 103-155 41-89 (180)
402 1tlt_A Putative oxidoreductase 26.6 1.3E+02 0.0044 30.6 7.5 104 41-163 5-115 (319)
403 1viz_A PCRB protein homolog; s 26.6 83 0.0028 31.8 5.8 63 76-151 24-89 (240)
404 4h08_A Putative hydrolase; GDS 26.5 2.6E+02 0.0087 25.7 9.1 81 42-127 21-121 (200)
405 3bbl_A Regulatory protein of L 26.5 2.2E+02 0.0077 27.8 9.1 66 52-126 25-96 (287)
406 2qjg_A Putative aldolase MJ040 26.4 3.7E+02 0.013 26.6 10.8 70 86-162 178-258 (273)
407 1tqj_A Ribulose-phosphate 3-ep 26.4 62 0.0021 32.1 4.8 86 57-146 104-201 (230)
408 1uir_A Polyamine aminopropyltr 26.3 1.8E+02 0.0061 29.9 8.6 68 42-113 102-185 (314)
409 2l69_A Rossmann 2X3 fold prote 26.1 1.3E+02 0.0045 26.2 6.1 40 42-81 78-117 (134)
410 1qap_A Quinolinic acid phospho 26.0 4.4E+02 0.015 27.2 11.4 92 43-144 181-278 (296)
411 2h6r_A Triosephosphate isomera 26.0 3.1E+02 0.011 26.7 9.8 88 53-146 100-199 (219)
412 3l49_A ABC sugar (ribose) tran 25.9 3.4E+02 0.012 26.2 10.3 67 53-126 23-95 (291)
413 1iy9_A Spermidine synthase; ro 25.9 2.2E+02 0.0075 28.6 9.0 69 42-113 100-179 (275)
414 1qpo_A Quinolinate acid phosph 25.9 2.3E+02 0.008 29.2 9.2 95 44-145 168-268 (284)
415 3tsa_A SPNG, NDP-rhamnosyltran 25.8 1.1E+02 0.0036 31.7 6.7 73 41-124 1-142 (391)
416 3g8r_A Probable spore coat pol 25.8 2.1E+02 0.0073 30.5 9.1 77 52-136 78-154 (350)
417 4eg0_A D-alanine--D-alanine li 25.7 52 0.0018 33.7 4.2 57 37-95 9-73 (317)
418 3tb6_A Arabinose metabolism tr 25.6 2.8E+02 0.0097 26.8 9.6 70 52-127 32-109 (298)
419 1req_B Methylmalonyl-COA mutas 25.5 71 0.0024 36.9 5.6 98 54-159 527-631 (637)
420 3c6k_A Spermine synthase; sper 25.4 1.4E+02 0.0048 32.2 7.7 56 42-97 229-294 (381)
421 2i2c_A Probable inorganic poly 25.4 1.2E+02 0.0041 30.7 6.9 88 43-164 2-94 (272)
422 3hut_A Putative branched-chain 25.3 2.7E+02 0.0094 27.9 9.7 84 42-131 140-234 (358)
423 3kux_A Putative oxidoreductase 25.3 1.8E+02 0.0063 30.0 8.5 106 41-164 7-118 (352)
424 3l6u_A ABC-type sugar transpor 25.3 1.8E+02 0.0063 28.3 8.2 68 53-127 26-99 (293)
425 2x6q_A Trehalose-synthase TRET 25.2 3.9E+02 0.013 27.5 11.1 72 75-162 307-378 (416)
426 3vkj_A Isopentenyl-diphosphate 25.0 4E+02 0.014 28.3 11.2 88 53-146 175-296 (368)
427 3dzc_A UDP-N-acetylglucosamine 24.9 1.4E+02 0.0048 31.6 7.6 43 116-163 325-367 (396)
428 3lop_A Substrate binding perip 24.8 1.2E+02 0.004 31.0 6.8 62 54-121 158-226 (364)
429 3paj_A Nicotinate-nucleotide p 24.7 1.3E+02 0.0045 31.8 7.1 53 103-159 219-271 (320)
430 1jvn_A Glutamine, bifunctional 24.6 3.1E+02 0.011 30.8 10.7 78 75-158 455-544 (555)
431 3njr_A Precorrin-6Y methylase; 24.5 1.4E+02 0.0048 28.3 6.9 74 41-123 77-153 (204)
432 3rhb_A ATGRXC5, glutaredoxin-C 24.5 1.6E+02 0.0056 24.9 6.7 74 51-126 6-82 (113)
433 3tha_A Tryptophan synthase alp 24.5 92 0.0032 31.7 5.7 58 104-164 77-140 (252)
434 2gjl_A Hypothetical protein PA 24.4 4.8E+02 0.017 26.7 11.5 62 73-146 84-145 (328)
435 3fhl_A Putative oxidoreductase 24.1 1.3E+02 0.0044 31.5 7.0 108 40-164 4-116 (362)
436 1mjf_A Spermidine synthase; sp 24.1 2.4E+02 0.0083 28.3 8.9 67 42-113 99-183 (281)
437 4af0_A Inosine-5'-monophosphat 24.0 1.7E+02 0.0059 33.2 8.2 56 87-145 293-349 (556)
438 3ctg_A Glutaredoxin-2; reduced 23.9 2.3E+02 0.0079 25.1 7.8 72 51-125 24-102 (129)
439 3f4l_A Putative oxidoreductase 23.9 34 0.0012 35.6 2.5 108 40-164 1-116 (345)
440 3hcw_A Maltose operon transcri 23.8 1.6E+02 0.0054 29.1 7.4 65 53-126 30-100 (295)
441 1kbi_A Cytochrome B2, L-LCR; f 23.8 2.3E+02 0.0079 31.6 9.3 90 54-146 332-432 (511)
442 3dii_A Short-chain dehydrogena 23.7 5E+02 0.017 25.0 11.2 82 40-125 1-83 (247)
443 2esr_A Methyltransferase; stru 23.6 1.1E+02 0.0038 27.7 5.7 66 42-110 55-123 (177)
444 1vcf_A Isopentenyl-diphosphate 23.5 2.7E+02 0.0093 28.8 9.4 85 55-145 172-284 (332)
445 2vpt_A Lipolytic enzyme; ester 23.5 98 0.0034 29.2 5.5 85 41-127 5-130 (215)
446 2rgy_A Transcriptional regulat 23.5 2.8E+02 0.0095 27.1 9.1 66 52-126 25-99 (290)
447 3e3m_A Transcriptional regulat 23.5 2.3E+02 0.0078 28.9 8.7 64 52-124 87-156 (355)
448 3e05_A Precorrin-6Y C5,15-meth 23.4 1.6E+02 0.0055 27.4 7.0 75 42-123 65-141 (204)
449 1qv9_A F420-dependent methylen 23.4 1.1E+02 0.0038 31.1 5.9 60 86-149 63-122 (283)
450 2qv7_A Diacylglycerol kinase D 23.3 3E+02 0.01 28.4 9.7 83 37-125 20-114 (337)
451 4htf_A S-adenosylmethionine-de 23.1 91 0.0031 30.9 5.4 80 41-124 90-173 (285)
452 2gk3_A Putative cytoplasmic pr 23.0 81 0.0028 31.7 5.0 63 56-126 44-127 (256)
453 1o2d_A Alcohol dehydrogenase, 23.0 1.4E+02 0.005 31.5 7.2 78 42-124 41-147 (371)
454 3ffs_A Inosine-5-monophosphate 22.7 1.8E+02 0.006 31.6 7.8 65 75-145 146-211 (400)
455 1t0b_A THUA-like protein; treh 22.6 1.9E+02 0.0065 29.1 7.7 49 41-93 7-73 (252)
456 3h5l_A Putative branched-chain 22.6 2.1E+02 0.0071 29.8 8.3 69 42-113 165-244 (419)
457 2pt6_A Spermidine synthase; tr 22.5 3.6E+02 0.012 27.7 10.1 69 42-113 141-220 (321)
458 1pii_A N-(5'phosphoribosyl)ant 22.4 5.7E+02 0.019 28.1 12.0 87 54-146 146-236 (452)
459 2fep_A Catabolite control prot 22.4 2.8E+02 0.0096 27.1 8.9 65 53-126 34-104 (289)
460 3bzb_A Uncharacterized protein 22.2 4.1E+02 0.014 26.4 10.2 69 43-113 104-190 (281)
461 4ew6_A D-galactose-1-dehydroge 22.2 2.1E+02 0.0071 29.5 8.1 103 41-164 25-132 (330)
462 2hmt_A YUAA protein; RCK, KTN, 22.1 2.1E+02 0.0071 24.5 7.1 28 43-71 8-35 (144)
463 3ctl_A D-allulose-6-phosphate 21.9 88 0.003 31.2 4.9 88 55-146 96-195 (231)
464 3gnn_A Nicotinate-nucleotide p 21.9 1.4E+02 0.0046 31.3 6.5 53 104-160 198-250 (298)
465 3ajd_A Putative methyltransfer 21.8 4.6E+02 0.016 25.9 10.5 54 42-95 109-164 (274)
466 1kjq_A GART 2, phosphoribosylg 21.7 1.9E+02 0.0065 30.1 7.8 34 39-73 9-42 (391)
467 3k9c_A Transcriptional regulat 21.6 1.9E+02 0.0065 28.4 7.5 65 53-127 29-98 (289)
468 4af0_A Inosine-5'-monophosphat 21.6 8.1E+02 0.028 27.7 13.0 101 41-147 293-414 (556)
469 2jjm_A Glycosyl transferase, g 21.6 93 0.0032 32.1 5.3 65 88-162 285-349 (394)
470 3ipc_A ABC transporter, substr 21.5 1.9E+02 0.0063 29.2 7.5 66 56-127 157-229 (356)
471 3jwh_A HEN1; methyltransferase 21.5 2.2E+02 0.0076 26.6 7.6 119 42-166 54-184 (217)
472 2fqx_A Membrane lipoprotein TM 21.5 3.2E+02 0.011 27.7 9.3 66 53-126 25-95 (318)
473 1vhc_A Putative KHG/KDPG aldol 21.4 2.5E+02 0.0085 27.7 8.1 86 59-149 12-99 (224)
474 3tj4_A Mandelate racemase; eno 21.2 3E+02 0.01 29.0 9.3 98 53-155 183-287 (372)
475 3kke_A LACI family transcripti 21.2 1.5E+02 0.0053 29.3 6.7 67 52-127 32-104 (303)
476 3bt7_A TRNA (uracil-5-)-methyl 21.2 2.3E+02 0.0079 29.7 8.4 68 42-110 236-317 (369)
477 2dri_A D-ribose-binding protei 21.2 2.9E+02 0.0099 26.7 8.6 66 53-126 19-91 (271)
478 1mxs_A KDPG aldolase; 2-keto-3 21.1 2E+02 0.0068 28.5 7.3 90 56-150 18-109 (225)
479 3sho_A Transcriptional regulat 21.0 3.8E+02 0.013 24.5 9.1 82 43-130 41-127 (187)
480 3o74_A Fructose transport syst 20.9 2E+02 0.0068 27.6 7.3 67 53-127 20-92 (272)
481 3ajx_A 3-hexulose-6-phosphate 20.9 2.6E+02 0.0089 26.4 8.0 97 42-145 78-185 (207)
482 3oy2_A Glycosyltransferase B73 20.9 1.9E+02 0.0067 29.7 7.7 106 42-162 216-354 (413)
483 3brq_A HTH-type transcriptiona 20.9 3.4E+02 0.012 26.2 9.1 67 52-126 38-110 (296)
484 3i45_A Twin-arginine transloca 20.9 4E+02 0.014 27.2 10.1 79 42-124 143-234 (387)
485 2ydy_A Methionine adenosyltran 20.9 2.5E+02 0.0086 27.8 8.3 33 40-72 1-33 (315)
486 3ia7_A CALG4; glycosysltransfe 20.8 4.1E+02 0.014 26.9 10.1 55 41-98 4-62 (402)
487 3egc_A Putative ribose operon 20.8 1.7E+02 0.0058 28.6 6.8 67 52-127 25-97 (291)
488 3kjx_A Transcriptional regulat 20.8 2.4E+02 0.0081 28.5 8.2 64 52-124 85-154 (344)
489 2iuy_A Avigt4, glycosyltransfe 20.7 1.2E+02 0.0041 30.5 5.8 107 41-162 188-307 (342)
490 3m9w_A D-xylose-binding peripl 20.5 3.3E+02 0.011 26.8 9.1 69 52-127 19-93 (313)
491 3abi_A Putative uncharacterize 20.5 1.9E+02 0.0067 30.1 7.6 95 36-145 11-106 (365)
492 2dwc_A PH0318, 433AA long hypo 20.5 2.1E+02 0.0072 30.4 8.0 34 39-73 17-50 (433)
493 3e8x_A Putative NAD-dependent 20.5 1E+02 0.0035 29.5 5.0 56 39-96 19-75 (236)
494 3c1r_A Glutaredoxin-1; oxidize 20.4 3E+02 0.01 23.8 7.7 72 51-125 12-90 (118)
495 3btv_A Galactose/lactose metab 20.4 1.4E+02 0.0048 32.2 6.6 108 41-163 20-145 (438)
496 2p2s_A Putative oxidoreductase 20.4 1.4E+02 0.0047 30.7 6.3 48 117-164 66-117 (336)
497 2b2c_A Spermidine synthase; be 20.3 1.6E+02 0.0055 30.5 6.7 69 42-113 133-212 (314)
498 1p4c_A L(+)-mandelate dehydrog 20.3 3.1E+02 0.011 29.2 9.2 87 54-146 214-307 (380)
499 3khj_A Inosine-5-monophosphate 20.3 5.1E+02 0.017 27.4 10.8 65 75-145 107-172 (361)
500 2agk_A 1-(5-phosphoribosyl)-5- 20.3 1.1E+02 0.0037 31.0 5.3 79 76-158 162-257 (260)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=2.9e-25 Score=209.35 Aligned_cols=121 Identities=25% Similarity=0.526 Sum_probs=113.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+|||||||++.+|..++.+|+..||+ |..|.+|.+|+++++. ..|||||+|+.||+|||++++++||+....+++|
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ip 89 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLP 89 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCe
Confidence 469999999999999999999999996 6679999999999987 4599999999999999999999999887778999
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|++.+.+...+|++.||+|||.|||+.++|..+|++++++
T Consensus 90 vI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 90 VLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp EEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998764
No 2
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.91 E-value=3.2e-24 Score=213.49 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=109.9
Q ss_pred CCCCEEEEEecCC----cEEEeccCcCCCcccccccccccccCCccEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHH
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEKDGSSEVVRTRWESFLPRMVLRVLLVEADDSTRQIISALLRKCGY-RVAAVPDGL 75 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~~~~~~~~~~~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gy-eV~~A~sg~ 75 (720)
||||+|.|+|.+| |+|++|........... ..........++||||||++.++..++.+|+..|| .|..+.++.
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~-~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~ 96 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETS-KPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGK 96 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHH
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCccccccc-CCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHH
Confidence 6999999999998 99999976543322111 11111223357999999999999999999999998 899999999
Q ss_pred HHHHHHHcC-----------CCCceEEEEeccCCCCCHHHHHHHHHhccC--CCCCeEEEEeccC-CHHHHHHHHHcCCc
Q 042954 76 AAWETLKCR-----------PHSIDLVLTEVELPSISGFALLTLVMEHDV--CKNIPVIMMSLHD-SISMVLKCMLKGAA 141 (720)
Q Consensus 76 eAle~L~~~-----------~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~--~p~ipVIvLTs~~-d~e~~~~Al~~GA~ 141 (720)
+|++.+... ...|||||+|+.||+++|++++++||+... .+.+|||++|++. +.+.+.++++.||+
T Consensus 97 eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~ 176 (206)
T 3mm4_A 97 EALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMD 176 (206)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCC
Confidence 999999763 125999999999999999999999998621 2789999999998 88889999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 142 DFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 142 dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
+||.||++ +|..+|+.++++...
T Consensus 177 ~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 177 AFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp EEEETTCT--THHHHHHHHC-----
T ss_pred EEEcCcHH--HHHHHHHHHHhhhHH
Confidence 99999999 899999998776543
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.88 E-value=7.7e-22 Score=178.54 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=113.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+.+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|
T Consensus 1 m~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCC
Confidence 45699999999999999999999999999999999999999976 4599999999999999999999999876567899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
||++|+..+.+...++++.||++||.||++.++|...|+++++
T Consensus 79 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 79 VIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998865
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.87 E-value=4.3e-21 Score=176.86 Aligned_cols=124 Identities=27% Similarity=0.494 Sum_probs=114.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+.+||||||++.++..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 4699999999999999999999999999999999999999987 45999999999999999999999998754578999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|++.+.+...++++.||++||.||++.++|..+|+.++++...
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999987654
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=7.4e-21 Score=171.30 Aligned_cols=119 Identities=29% Similarity=0.415 Sum_probs=111.3
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++. ..+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ 75 (120)
T 3f6p_A 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKDGVEVCREVRKK---YDMP 75 (120)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTTTHHHHHHHHHHTT---CCSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCC
Confidence 45699999999999999999999999999999999999999987 459999999999999999999999975 4689
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|+..+.....++++.||++||.||++.++|..+|+.++++
T Consensus 76 ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 76 IIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998764
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=3.6e-23 Score=192.44 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=103.4
Q ss_pred ccCCccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 37 l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
|....+|||||||++.++..++.+|+..||+|+ .|.+|.+|+++++. ..|||||+|+.||+++|++++++||+.
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~~--- 78 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSYPVADILAER--- 78 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHHT---
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcC---
Confidence 444568999999999999999999999999986 68999999999987 459999999999999999999999973
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
++|||++|++.+... +.++|+.+||.|||+.++|..+|+++++
T Consensus 79 -~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 79 -NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp -CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred -CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 589999999987543 3468999999999999999998877543
No 7
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.84 E-value=3.1e-20 Score=168.97 Aligned_cols=122 Identities=25% Similarity=0.529 Sum_probs=111.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+... ..|||||+|+.||+++|++++++||+....+.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 469999999999999999999999995 88899999999988653 2599999999999999999999999865557899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|++.+.....++++.||++||.||++.++|...|+.+++.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998764
No 8
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.84 E-value=3.4e-20 Score=170.14 Aligned_cols=123 Identities=19% Similarity=0.421 Sum_probs=109.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcC---CCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCR---PHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~A~sg~eAle~L~~~---~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
+++||||||++..+..++.+|+..||. |..+.++.+|++.+... ...|||||+|+.||+++|++++++|++.. .+
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~-~~ 80 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL-GY 80 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS-CC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc-CC
Confidence 368999999999999999999988874 78899999999988750 12499999999999999999999999742 25
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.+|||++|++.+.+...++++.||++||.||++.++|..+|+.++...
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999999999876543
No 9
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.84 E-value=7.1e-20 Score=167.27 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=114.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDMEGTELLEKAHKLR--PGMKK 78 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhC--CCCcE
Confidence 46999999999999999999999999999999999999999874 599999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|++.+.+...++++.||++||.||++.++|..+|+.++++..+
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 124 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEK 124 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999876654
No 10
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.84 E-value=8.9e-20 Score=171.52 Aligned_cols=125 Identities=23% Similarity=0.394 Sum_probs=116.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++....+.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 35799999999999999999999999999999999999999976 4599999999999999999999999876567899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...++++.||++||.||++.++|..+|+.++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987654
No 11
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.83 E-value=4.3e-20 Score=174.27 Aligned_cols=125 Identities=27% Similarity=0.464 Sum_probs=114.7
Q ss_pred cccCCccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 36 FLPRMVLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 36 ~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
....|+++||||||++..+..|+.+|+..||+|. .+.++.+|++.+......|||||+|+.||+++|++++++|++..
T Consensus 31 ~~~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~- 109 (157)
T 3hzh_A 31 YDTGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD- 109 (157)
T ss_dssp TTTTEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC-
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC-
Confidence 3455678999999999999999999999999998 89999999999987411589999999999999999999999876
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+.+|||++|+..+.+...++++.||++||.||++.++|..+|+.+++
T Consensus 110 -~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 110 -KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp -TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred -CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999998764
No 12
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.83 E-value=1.7e-20 Score=182.36 Aligned_cols=121 Identities=15% Similarity=0.251 Sum_probs=113.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++.++..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 82 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSGLSLIAPLCDLQ--PDARI 82 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEESHHHHHHHHHHC--TTCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccHHHHHHHHHhcC--CCCCE
Confidence 5799999999999999999999999999999999999999976 4599999999999999999999999876 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+.+.+|++.||++||.||++.++|..+|+.++++..
T Consensus 83 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 83 LVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988776543
No 13
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.83 E-value=6.3e-20 Score=164.97 Aligned_cols=120 Identities=25% Similarity=0.438 Sum_probs=111.4
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVID--ENIR 77 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHHC--TTCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHHhC--CCCC
Confidence 34699999999999999999999999999999999999999976 3499999999999999999999999875 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|++.+.+...++++.||++||.||++.++|...|+.++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999987654
No 14
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.83 E-value=1.8e-19 Score=162.64 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=112.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..++.+|...||.|..+.++.++++.+.. ..|||||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDLK--INIPS 78 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 3699999999999999999999999999999999999999876 4599999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (126)
T 1dbw_A 79 IVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123 (126)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999887543
No 15
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.83 E-value=1.2e-19 Score=167.03 Aligned_cols=125 Identities=24% Similarity=0.415 Sum_probs=116.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+......|||||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~i 80 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT--PHMAV 80 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC--TTCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCeE
Confidence 5799999999999999999999999999999999999999984224699999999999999999999999876 88999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++..+.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887653
No 16
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.83 E-value=9.1e-20 Score=162.67 Aligned_cols=118 Identities=26% Similarity=0.455 Sum_probs=108.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|+++||||||++..+..++.+|+..||+ +..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~ 76 (120)
T 1tmy_A 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKID--PNA 76 (120)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHC--TTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhC--CCC
Confidence 4579999999999999999999999999 45799999999999873 499999999999999999999999876 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
|||++|+..+.....++++.||++||.||++.++|...|+.++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 77 KIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred eEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
No 17
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=2.2e-19 Score=160.12 Aligned_cols=119 Identities=24% Similarity=0.409 Sum_probs=111.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++..+..+..+|...||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 489999999999999999999999999999999999999987 4599999999999999999999999865 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|+..+.....++++.||++||.||++.++|...|+.++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999987753
No 18
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.83 E-value=3.9e-20 Score=170.10 Aligned_cols=127 Identities=19% Similarity=0.294 Sum_probs=114.2
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~ 117 (720)
++++||||||++..+..++.+|+. .||+|..+.++.+|++.+... ..|||||+|+.|| +++|++++++|++....+.
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~ 81 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTAN 81 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCC
Confidence 357999999999999999999999 899999999999999998751 3499999999999 9999999999999433489
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++....
T Consensus 82 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 82 TPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp CCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999887653
No 19
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.83 E-value=1.7e-19 Score=168.34 Aligned_cols=131 Identities=17% Similarity=0.245 Sum_probs=115.8
Q ss_pred ccccccCCccEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 33 WESFLPRMVLRVLLVEADDSTRQIISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 33 ~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
|.......|++||||||++..+..++.+|+..+ |.|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|+
T Consensus 12 ~~~~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~ 89 (150)
T 4e7p_A 12 SGLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIR 89 (150)
T ss_dssp --------CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred cCCCCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 334444557899999999999999999999887 789999999999999976 4599999999999999999999999
Q ss_pred hccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 111 EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
+.. +.+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++...+
T Consensus 90 ~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 144 (150)
T 4e7p_A 90 SEK--LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKEY 144 (150)
T ss_dssp HTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCEE
T ss_pred HhC--CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEEc
Confidence 875 8899999999999999999999999999999999999999999999887653
No 20
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=168.48 Aligned_cols=123 Identities=21% Similarity=0.384 Sum_probs=107.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc--cCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH--DVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~--~~~p~ 117 (720)
+.++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++||+. ...+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 35799999999999999999999999999999999999999987 459999999999999999999999854 23467
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+|||++|+..+.+...++++.||++||.||++.++|..+|+.+....
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999876543
No 21
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.82 E-value=2.7e-19 Score=160.05 Aligned_cols=119 Identities=23% Similarity=0.389 Sum_probs=110.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|..+||||||++..+..++.+|+..||.|..+.++.++++.+... .|||||+|+.||+++|+++++.|++ . +.+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~-~--~~~~ 75 (122)
T 1zgz_A 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRE-R--STVG 75 (122)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHT-T--CCCE
T ss_pred CCcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHh-c--CCCC
Confidence 456999999999999999999999999999999999999999874 4999999999999999999999998 3 6899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|+..+.....++++.||++||.||++.++|...|+.++++
T Consensus 76 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 76 IILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765
No 22
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1.2e-19 Score=184.72 Aligned_cols=122 Identities=22% Similarity=0.410 Sum_probs=115.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+++||||||++.++..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 97 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPGMDGFGVLRRLRADG--IDAP 97 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 35799999999999999999999999999999999999999987 4499999999999999999999999876 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|++.+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 98 ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998754
No 23
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.82 E-value=5.6e-20 Score=167.20 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=114.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+++||||||++..+..++.+|+..||.+. .+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+|
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~ 76 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGI 76 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT--CCSE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHhcC--CCCe
Confidence 36999999999999999999999999998 799999999999874 499999999999999999999999876 8999
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCC
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGH 170 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~ 170 (720)
||++|+..+.+...++++.||++||.||++.++|..+|+.++++..++...
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~ 127 (134)
T 3f6c_A 77 IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFS 127 (134)
T ss_dssp EEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCCCC
T ss_pred EEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEeCHH
Confidence 999999999989999999999999999999999999999999998876443
No 24
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.82 E-value=3e-19 Score=166.75 Aligned_cols=128 Identities=24% Similarity=0.442 Sum_probs=115.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHc-------CCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKC-------RPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~-------~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
+.++||||||++..+..++.+|+..|| .|..+.++.+|++.++. ....|||||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999999998 89999999999999951 124699999999999999999999999
Q ss_pred hccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 111 EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
+....+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+++.+....+
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSVM 139 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTTS
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHc
Confidence 965558999999999999999999999999999999999999999999997766553
No 25
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.82 E-value=1.5e-19 Score=166.93 Aligned_cols=125 Identities=19% Similarity=0.313 Sum_probs=115.2
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++++||||||++..+..++.+|+..||. |..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4679999999999999999999999886 8889999999999976 45999999999999999999999998544589
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhccc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPV-RRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~~~ 166 (720)
+|||++|+..+.+...++++.||++||.||+ +.++|..+|+.+++++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999987653
No 26
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.82 E-value=4.1e-20 Score=166.20 Aligned_cols=124 Identities=27% Similarity=0.385 Sum_probs=113.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+.+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 78 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIP 78 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCC
Confidence 56799999999999999999999999999999999999998865 4599999999999999999999999875457899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|+..+.+...++++.||++||.||++.++|...|+.++++..
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 124 (127)
T 2jba_A 79 VVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS 124 (127)
T ss_dssp EEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCCC
T ss_pred EEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhccc
Confidence 9999999998899999999999999999999999999999987654
No 27
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.82 E-value=1.6e-19 Score=161.64 Aligned_cols=121 Identities=23% Similarity=0.397 Sum_probs=106.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 489999999999999999999999999999999999999876 349999999999999999999999986545789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
++|++.+.+...++++.||++||.||++.++|..+|+.++++.
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 9999998888899999999999999999999999999987653
No 28
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.82 E-value=2.7e-19 Score=167.53 Aligned_cols=123 Identities=22% Similarity=0.338 Sum_probs=115.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+|
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 88 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLARIHQQY--PSTT 88 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHHHHHhHC--CCCe
Confidence 467999999999999999999999999999999999999999874 599999999999999999999999875 8899
Q ss_pred EEEEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKG-AADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~G-A~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...++++.| |++||.||++.++|..+|+.++++...
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999 999999999999999999999887653
No 29
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.82 E-value=6.8e-20 Score=168.26 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=114.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p~i 118 (720)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+ ++|++++++|++.. +.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~~ 81 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRG--FHL 81 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTT--CCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCC--CCC
Confidence 4699999999999999999999999999999999999998876 45999999999999 99999999999976 899
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|||++|+..+.+...++++.||++||.||++.++|..+|++++.+...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999988765
No 30
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.82 E-value=2e-19 Score=164.51 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=109.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
+++||||||++..+..++.+|+..+ +.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~--~~~ 78 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKH--LNI 78 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTT--CSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHC--CCC
Confidence 4689999999999999999999876 5667799999999999763 499999999999999999999999865 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
|||++|++.+.+...++++.||++||.||++.++|..+|+.++++..++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~ 127 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKEG 127 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC-----
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999999999999999998876653
No 31
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.82 E-value=2.1e-19 Score=162.79 Aligned_cols=122 Identities=24% Similarity=0.435 Sum_probs=105.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
...+||||||++..+..++.+|+..||.+..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNGLKLLEHIRNRG--DQTP 81 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC-----CHHHHHHHHHTT--CCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCC
Confidence 35699999999999999999999999999999999999999976 4599999999999999999999999876 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPV-RRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~~ 165 (720)
||++|+..+.+...++++.||++||.||+ +.++|..+|+.++++..
T Consensus 82 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~~ 128 (130)
T 3eod_A 82 VLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp EEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC---
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchhh
Confidence 99999999999999999999999999999 89999999999987653
No 32
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.82 E-value=3.7e-19 Score=162.44 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=112.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+.+||||||++..+..++.+|+..||+|..+.++.+|+..+... ..|||||+|+.||+++|++++++|++.. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASE-RAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTST-TTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCC
Confidence 357999999999999999999999999999999999999998763 2499999999999999999999999873 47899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...++++.||++||.||++.++|..+|++++.+...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 99999999999999999999999999999999999999999887754
No 33
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=3.4e-19 Score=158.30 Aligned_cols=118 Identities=25% Similarity=0.459 Sum_probs=109.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|.+||||||++..+..++.+|...||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++. +.+||
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~i 75 (120)
T 2a9o_A 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPI 75 (120)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHH---CCCCE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHhC---CCCCE
Confidence 4689999999999999999999999999999999999999976 349999999999999999999999974 57999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 76 LMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999998764
No 34
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=1.8e-19 Score=166.12 Aligned_cols=121 Identities=26% Similarity=0.415 Sum_probs=112.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+||
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~--~~~~i 79 (137)
T 3cfy_A 4 RPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPDMSGEDVLDWINQND--IPTSV 79 (137)
T ss_dssp CCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSSSBHHHHHHHHHHTT--CCCEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 3589999999999999999999889999999999999999987 3499999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 80 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 80 IIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 35
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=1.1e-19 Score=166.68 Aligned_cols=124 Identities=17% Similarity=0.279 Sum_probs=114.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+.+||||||++..+..++.+|+..||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.+||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 46999999999999999999999999999999999999999874 4999999999999999999999998544589999
Q ss_pred EEEeccCCHHHHH-HHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVL-KCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~-~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+..... .+++.||++||.||++.++|..+|+.++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 9999998877777 899999999999999999999999999988765
No 36
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=4.7e-19 Score=159.78 Aligned_cols=122 Identities=21% Similarity=0.481 Sum_probs=111.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.++||||||++..+..++.+|+..|| .|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ 81 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALP 81 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCc
Confidence 35899999999999999999999999 78889999999999976 4599999999999999999999999854457899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
||++|+..+.+...++++.||++||.||++.++|...|+.+++..
T Consensus 82 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 82 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987653
No 37
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.81 E-value=1.6e-19 Score=165.02 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=115.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++++||||||++..+..++.+|+..+|.|..+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGG--AKPY 81 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTT--CCCE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 467999999999999999999999999999999999999999874 599999999999999999999999876 8899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...++++.||++||.||++.++|..+|++++++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999987754
No 38
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.81 E-value=1.2e-19 Score=163.81 Aligned_cols=122 Identities=22% Similarity=0.287 Sum_probs=109.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 46999999999999999999999999999999999999999874 4999999999999999999999999844589999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|+..+.+. .+++..||++||.||++.++|..+++..++...
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 99999998887 889999999999999999999999999876543
No 39
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=1.9e-19 Score=162.55 Aligned_cols=121 Identities=21% Similarity=0.435 Sum_probs=112.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 46999999999999999999999899 78889999999999986 4599999999999999999999999875457899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|+..+.....++++.||++||.||++.++|..+|+.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998764
No 40
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.81 E-value=7e-20 Score=199.46 Aligned_cols=120 Identities=25% Similarity=0.376 Sum_probs=114.0
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
+||||||++.++..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+||||
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI~ 77 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIV 77 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTTHHHHHHHHC--TTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEE
Confidence 89999999999999999999999999999999999999987 4599999999999999999999999876 8899999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
+|++.+.+.+.+|++.||+|||.||++.++|...|+++++....
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSK 121 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999887654
No 41
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.81 E-value=2.4e-19 Score=162.74 Aligned_cols=123 Identities=18% Similarity=0.333 Sum_probs=110.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
|+++||||||++..+..++.+|... ||.++ .+.++.+|++.+... .|||||+|+.||+++|++++++|++.. .+.
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~-~~~ 77 (130)
T 1dz3_A 1 MSIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLDGLAVLERIRAGF-EHQ 77 (130)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHHC-SSC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcC-CCC
Confidence 4579999999999999999999987 89876 699999999999763 499999999999999999999999852 267
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+|||++|++.+.+...++++.||++||.||++.++|...|+.++++..
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 125 (130)
T 1dz3_A 78 PNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp CEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999999999999999887653
No 42
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.81 E-value=3.1e-19 Score=162.06 Aligned_cols=122 Identities=21% Similarity=0.298 Sum_probs=108.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..++.+|+ .+|+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 5799999999999999999999 789999999999999999874 5999999999999999999999999765578999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+... .++++.||++||.||++.++|..+|+.++++...
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 81 IFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 99999988877 8999999999999999999999999999988765
No 43
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.81 E-value=3.7e-19 Score=162.14 Aligned_cols=123 Identities=23% Similarity=0.417 Sum_probs=113.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+.+||||||++..+..+..+|...||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQK--LMFP 77 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHcCC--CCCC
Confidence 56799999999999999999999999999999999999999876 3499999999999999999999999875 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+......+++.||++||.||++.++|...|+.++++...
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 124 (136)
T 1mvo_A 78 ILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 124 (136)
T ss_dssp EEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC--
T ss_pred EEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhcc
Confidence 99999999888888999999999999999999999999999876543
No 44
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.81 E-value=4e-20 Score=169.28 Aligned_cols=120 Identities=16% Similarity=0.068 Sum_probs=111.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.+.+||||||++..+..++.+|+..| |+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 45799999999999999999999999 999999999999998866 4599999999999999999999999987 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|||++|++.+.+...++++.||++||.||++.++|..+|+.++++
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999987654
No 45
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.81 E-value=7.3e-19 Score=164.09 Aligned_cols=124 Identities=21% Similarity=0.295 Sum_probs=112.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC-----CCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCR-----PHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~-----~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
.++||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|++++++|++..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 36899999999999999999998876 888999999999998741 13599999999999999999999999875
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
..+.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+.+++..
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999987654
No 46
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.81 E-value=9.6e-19 Score=160.13 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=114.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++++||||||++..+..++.+|+. .||+ |..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 357999999999999999999999 8999 88899999999999874 4999999999999999999999998544588
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
+|||++|+..+.....++++.||++||.||++.++|..+|+.++++...
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999987764
No 47
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.81 E-value=4.8e-19 Score=162.97 Aligned_cols=124 Identities=21% Similarity=0.374 Sum_probs=109.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|++||||||++..+..++.+|+..||.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 46999999999999999999999999999999999999999874 4999999999999999999999998754568999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+......++..|+++||.||++.++|..+|+.++++...
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 126 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHS 126 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC--
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhhc
Confidence 9999988766555666777899999999999999999999876544
No 48
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.81 E-value=7.4e-19 Score=161.46 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=113.2
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC---CCCceEEEEeccCCCCCHHHHHHHHHhcc-
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCR---PHSIDLVLTEVELPSISGFALLTLVMEHD- 113 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~---~~~pDLVLlDv~MP~~dGieLL~~Ir~~~- 113 (720)
.+++||||||++..+..+..+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|++++++|++..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 357999999999999999999999998 899999999999999761 12499999999999999999999999843
Q ss_pred -CCCCCeEEEEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 114 -VCKNIPVIMMSLHDSISMVLKCMLKG-AADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 114 -~~p~ipVIvLTs~~d~e~~~~Al~~G-A~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
..+.+|||++|+..+.+...+++..| |++||.||++.++|..+|+.++.+...
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~~ 142 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGHH 142 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC---
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhccC
Confidence 34789999999999999999999999 999999999999999999998876654
No 49
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.81 E-value=1.6e-18 Score=171.46 Aligned_cols=125 Identities=18% Similarity=0.309 Sum_probs=115.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
+|++||||||++.++..++.+|+.. +|.+ ..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKS--LS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHSC--CC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 4579999999999999999999987 4888 679999999999987 3499999999999999999999999875 78
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++...+.
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~ 130 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLS 130 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCC
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecC
Confidence 999999999999999999999999999999999999999999999876543
No 50
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=5.3e-19 Score=162.63 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=116.1
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCC--------CCceEEEEeccCCCCCHHHHHH
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRP--------HSIDLVLTEVELPSISGFALLT 107 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~--------~~pDLVLlDv~MP~~dGieLL~ 107 (720)
+.++++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..|||||+|+.||+++|+++++
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 45678999999999999999999999998 8999999999999997511 3599999999999999999999
Q ss_pred HHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 108 LVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 108 ~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+|++....+.+|||++|+..+.+...++++.|+++||.||++.++|...|+.+++...
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9998754468999999999999999999999999999999999999999999987653
No 51
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.80 E-value=6.2e-19 Score=156.85 Aligned_cols=119 Identities=25% Similarity=0.361 Sum_probs=110.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|++||||||++..+..++.+|...||.|..+.++.+|+..+.. ..|||||+|+.||+++|++++++|++ . +.+||
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~-~--~~~~i 75 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQ-W--SAVPV 75 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHT-T--CCCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHh-C--CCCcE
Confidence 4689999999999999999999999999999999999998876 34999999999999999999999994 3 67999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|++|+..+.....++++.||++||.||++.++|...|+.++++.
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 76 IVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988754
No 52
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.80 E-value=4.6e-19 Score=176.09 Aligned_cols=123 Identities=28% Similarity=0.405 Sum_probs=115.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
||++||||||++..+..++.+|...||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|
T Consensus 1 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~ 76 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKSMRESG--VNTP 76 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 67899999999999999999999999999999999999999987 4599999999999999999999999875 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|++.+.+...++++.||++||.||++.++|..+|+.++++...
T Consensus 77 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~ 123 (225)
T 1kgs_A 77 VLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123 (225)
T ss_dssp EEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999988764
No 53
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.80 E-value=1.4e-18 Score=155.56 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=110.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~i 77 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhC---CCCcE
Confidence 3589999999999999999999999999999999999999987 459999999999999999999999986 57999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|++|+..+.....++++.||++||.||++.++|...|+.++++
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765
No 54
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.80 E-value=3.5e-19 Score=164.83 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=113.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
...+||||||++..+..|+.+|+..| |+|..+.++.+++..+......|||||+|+.||+++|++++++|++.. +.+
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 96 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLH--PGL 96 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHC--TTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhC--CCC
Confidence 45799999999999999999999998 999999999998877653102499999999999999999999999876 889
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|||++|+..+.+.+.++++.||++||.||++.++|..+|+.++++..
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999988754
No 55
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1e-18 Score=163.15 Aligned_cols=126 Identities=24% Similarity=0.341 Sum_probs=112.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
..+||||||++..+..++.+|+..|+. |..+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.+
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~ 90 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYE--LPT 90 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT--CSC
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCC
Confidence 479999999999999999999998843 45799999999999874 499999999999999999999999876 889
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCCC
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGGH 170 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~~ 170 (720)
|||++|+..+.+...++++.||++||.||++.++|..+|+.++++..++...
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~ 142 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPS 142 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC------
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeeeCHH
Confidence 9999999999999999999999999999999999999999999988775443
No 56
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.80 E-value=7.8e-19 Score=161.47 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=112.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~~~g~~~~~~l~~~~--~~~p 77 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEGEESLNLIRRIREEF--PDTK 77 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTTHHHHHHHHHHHHHC--TTCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCCCcHHHHHHHHHHHC--CCCC
Confidence 46799999999999999999999999999999999999999976 4599999999 99999999999999876 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...++++.|+++||.||++.++|..+|+.++++...
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999987654
No 57
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.3e-18 Score=157.98 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=114.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC-----CCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCR-----PHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~-----~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
.++||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|++++++|++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 35999999999999999999999998 999999999999999751 13599999999999999999999999875
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
..+.+|||++|+..+.+...++++.|+++||.||++.++|...|+.+++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 4468999999999999999999999999999999999999999999987654
No 58
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.80 E-value=1.1e-18 Score=160.71 Aligned_cols=120 Identities=20% Similarity=0.346 Sum_probs=111.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++..+..+..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. .+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~---~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNVT---TCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEEHHHHHHHHHTTC---CCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccCC---CCCE
Confidence 46999999999999999999999999999999999999999874 599999999999999999999999753 7899
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|+..+.+...++++.||++||.||++.++|...|+.++++..
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887643
No 59
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.80 E-value=7.1e-19 Score=181.61 Aligned_cols=126 Identities=26% Similarity=0.365 Sum_probs=115.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
..++||||||++.++..+...|+..||.|..+.++.+|++.+... ..|||||+|+.||+++|++++++||+......+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 457999999999999999999999999999999999999999763 2489999999999999999999999986556799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|++.+.+...+|++.||+|||.||++.++|...|+++++....
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999876543
No 60
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.80 E-value=6.5e-19 Score=162.95 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=114.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++++||||||++..+..+..+|...||+|..+.++.+|++.+... .|||||+|+.||+++|+++++.|++....+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 467999999999999999999999999999999999999999874 499999999999999999999999854458899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|+..+.+...++++.||++||.||++.++|..+|+.+++...
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988664
No 61
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.79 E-value=2.4e-19 Score=166.09 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=104.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK--CGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~--~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
||++||||||++..+..+..+|.. .||.+. .+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +
T Consensus 1 m~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~l~~~l~~~~--~ 76 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMDGIELVDNILKLY--P 76 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSCHHHHHHHHHHHC--T
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--C
Confidence 568999999999999999999973 578877 79999999999876 4599999999999999999999999865 7
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.+|||++|+..+.+...++++.||.+||.||++.++|..+|+.+++..
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 77 DCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp TCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999998888889999999999999999999999999987754
No 62
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.79 E-value=1.4e-18 Score=158.68 Aligned_cols=123 Identities=15% Similarity=0.297 Sum_probs=113.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHHHHhccCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTLVMEHDVC 115 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~ 115 (720)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+... .|||||+|+.|| +++|+++++.|++..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~-- 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY-- 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHC--
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC--
Confidence 57999999999999999999999999999999999999999874 499999999999 999999999999875
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
+.+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++....
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 130 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKDG 130 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC---
T ss_pred cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcccc
Confidence 7899999999999999999999999999999999999999999999877653
No 63
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.79 E-value=3.4e-19 Score=164.40 Aligned_cols=121 Identities=23% Similarity=0.328 Sum_probs=111.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ip 119 (720)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+... ..|||||+|+.||+ ++|++++++|++. +.+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~~~ 80 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQI---SELP 80 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHH---CCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhC---CCCC
Confidence 46999999999999999999999999999999999999999752 35999999999995 9999999999975 6899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|+..+.+.+.++++.||++||.||++.++|..+|+.++++..
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 81 VVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999999999988764
No 64
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.79 E-value=3.9e-19 Score=163.17 Aligned_cols=126 Identities=15% Similarity=0.307 Sum_probs=115.1
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.++++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK--GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 346799999999999999999999999999999999999999987 459999999999999999999999984344889
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|||++|+..+.+...++++.||++||.||++.++|...|+.++++.+.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999888888999999999999999999999999999887654
No 65
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.79 E-value=8.6e-19 Score=163.79 Aligned_cols=125 Identities=19% Similarity=0.354 Sum_probs=116.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.+++||||||++..+..++.+|+. .||.++ .+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~--~~ 79 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWD--GA 79 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHC--TT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhC--CC
Confidence 357999999999999999999998 799998 799999999999874 499999999999999999999999976 78
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++...+.
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~ 130 (153)
T 3cz5_A 80 ARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMS 130 (153)
T ss_dssp CCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEEC
T ss_pred CeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccCC
Confidence 999999999999999999999999999999999999999999988877644
No 66
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.79 E-value=2.5e-18 Score=155.88 Aligned_cols=123 Identities=18% Similarity=0.338 Sum_probs=107.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.++|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKI 83 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeE
Confidence 4699999999999999999999999999999999999999987 45999999999999999999999998754356677
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|+++..... ...++++.||++||.||++.++|..+|+.++.+...
T Consensus 84 i~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (132)
T 3lte_A 84 LVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGHH 128 (132)
T ss_dssp EEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC----
T ss_pred EEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCCC
Confidence 777776655 788999999999999999999999999998876654
No 67
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.79 E-value=2.6e-19 Score=164.52 Aligned_cols=124 Identities=21% Similarity=0.337 Sum_probs=106.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+.+||||||++..+..++.+|+.. |.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++....+.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 479999999999999999999988 9999999999999999874 5999999999999999999999998765578999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++..++
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 126 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYY 126 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHH
Confidence 99999999988999999999999999999999999999999987764
No 68
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.7e-19 Score=189.62 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=109.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~i 118 (720)
..+||||||++.++..++.+|+..||+|. .|.+|.+|++.+.. ..|||||+|+.|| +|||+++++.||+.. ++
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~ 234 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADGSSGIDAVKDILGRM---DV 234 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTSCCTTTTTHHHHHHT---TC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCCCCHHHHHHHHHhcC---CC
Confidence 46899999999999999999999999999 89999999999987 4599999999999 899999999999875 89
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|||++|++.+ ...+|++.||++||.||++.++|..+|+.+++...
T Consensus 235 piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 235 PVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp CEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999999863 46779999999999999999999999999998764
No 69
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.79 E-value=1.7e-18 Score=161.75 Aligned_cols=123 Identities=17% Similarity=0.307 Sum_probs=113.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++++||||||++..+..+..+|+. ||+|..+.++.+|++.+.... .|||||+|+.||+++|++++++|++.. +.+|
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 78 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLIS--PNSV 78 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHC--SSCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCcE
Confidence 457999999999999999999976 899999999999999998632 369999999999999999999999876 8899
Q ss_pred EEEEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKG-AADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~G-A~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...+++..| +++||.||++.++|..+|+.++++...
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 79 YLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999999987654
No 70
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.79 E-value=5.3e-19 Score=193.59 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=112.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++.++..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKERS--PETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Confidence 489999999999999999999989999999999999999987 4599999999999999999999999876 789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|++.+.+.+.+|++.||+|||.||++.++|..+|+++++...
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887543
No 71
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.79 E-value=6.7e-19 Score=156.09 Aligned_cols=115 Identities=20% Similarity=0.408 Sum_probs=105.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+||
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 76 (116)
T 3a10_A 1 MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPGISGLEVAGEIRKKK--KDAKI 76 (116)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHccC--CCCeE
Confidence 3589999999999999999999999999999999999999987 4599999999999999999999999876 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
|++|++.+.. .+++..|+++||.||++.++|...|+.++
T Consensus 77 i~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 77 ILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9999987655 67889999999999999999999998764
No 72
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.78 E-value=2.5e-18 Score=157.21 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=108.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC---CC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC---KN 117 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~---p~ 117 (720)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+.. . +||||+|+.||+++|++++++|++.... +.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 83 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--E-HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQR 83 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--T-CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--c-CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCC
Confidence 4699999999999999999999999999999999999998853 3 3999999999999999999999853211 22
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
.+||++|+..+.....++++.||++||.||++.++|..+|+.++++..+
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 132 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRVL 132 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCCCC
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchhhh
Confidence 3688899999999999999999999999999999999999999876554
No 73
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.78 E-value=1.3e-18 Score=177.97 Aligned_cols=121 Identities=22% Similarity=0.404 Sum_probs=113.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++.++..|+.+|+..||.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++ . +.+||
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~-~--~~~~i 111 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFDGGDVVQRLRK-N--SALPI 111 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHT-T--CCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHc-C--CCCCE
Confidence 47999999999999999999999999999999999999999874 5999999999999999999999997 3 68999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|++.+.+.+.+|++.||++||.||++.++|..+|+.++++...
T Consensus 112 I~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~ 157 (249)
T 3q9s_A 112 IVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTS 157 (249)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCS
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999987654
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.78 E-value=3.9e-18 Score=159.49 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=114.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++.. +.+||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~i 82 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG--TSVQLVISDMRMPEMGGEVFLEQVAKSY--PDIER 82 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT--SCCSEEEEESSCSSSCHHHHHHHHHHHC--TTSEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHhC--CCCcE
Confidence 5799999999999999999999999999999999999999976 4599999999999999999999999876 78999
Q ss_pred EEEeccCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKG-AADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~G-A~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+.....++++.| |++||.||++.++|..+|+.++++...
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 999999999999999999999887654
No 75
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.78 E-value=1.7e-18 Score=154.66 Aligned_cols=121 Identities=21% Similarity=0.335 Sum_probs=110.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~i 118 (720)
|.++||||||++..+..+..+|+..||+|..+.++.+|++.+... .|||||+|+.|| +++|++++++|++....+.+
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~ 81 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence 446999999999999999999999999999999999999999874 499999999999 99999999999997445789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|||++ +..+.+...++++.|+++||.||++.++|...|+.+++.
T Consensus 82 ~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 82 PIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp CEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 99999 888888889999999999999999999999999998764
No 76
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.78 E-value=1.1e-18 Score=171.67 Aligned_cols=121 Identities=23% Similarity=0.400 Sum_probs=113.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 79 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAIS--DGIPI 79 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 3599999999999999999999999999999999999998865 4599999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+...++++.||++||.||++.++|...|+.++++..
T Consensus 80 i~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 80 VFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp EEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 999999998889999999999999999999999999999988654
No 77
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.78 E-value=3.4e-18 Score=156.16 Aligned_cols=121 Identities=19% Similarity=0.283 Sum_probs=113.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~i 118 (720)
+++||||||++..+..++.+|+..||+|.. +.++.+|++.+... .|||||+|+.|| +++|+++++.|++. +.+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~---~~~ 83 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALDGVETAARLAAG---CNL 83 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHH---SCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhC---CCC
Confidence 579999999999999999999999999994 99999999999874 499999999999 79999999999986 689
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|||++|+..+.+...++++.||++||.||++.++|..+|+.++++...
T Consensus 84 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999987765
No 78
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.77 E-value=1e-18 Score=190.08 Aligned_cols=124 Identities=23% Similarity=0.459 Sum_probs=110.7
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..++++||||||++.++..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++||+.. ++
T Consensus 2 ~~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~--~~ 77 (394)
T 3eq2_A 2 HKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQIDGLELIRRIRQTA--SE 77 (394)
T ss_dssp --CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSSSCTHHHHHHHHHTT--CC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHHhhC--CC
Confidence 3456899999999999999999999999999999999999999987 4599999999999999999999999875 88
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhcc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPV-RRNELRNLWQHVWRRHS 165 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~~ 165 (720)
+|||++|++.+.+.+.+|++.||+|||.||+ ..++|...|+.+++...
T Consensus 78 ~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 78 TPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp CCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999 68899999998877543
No 79
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.77 E-value=2e-18 Score=169.80 Aligned_cols=122 Identities=24% Similarity=0.387 Sum_probs=112.5
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.|..+||||||++.++..+..+|...||+|+ .+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~~~g~~~~~~l~~~~--~- 85 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASKR--I- 85 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--C-
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCChHHHHHHHHhcC--C-
Confidence 3457999999999999999999999999998 79999999999987 4499999999999999999999999875 3
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
.|||++|++.+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 86 ~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 86 APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999987654
No 80
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.77 E-value=3.1e-18 Score=175.95 Aligned_cols=121 Identities=23% Similarity=0.421 Sum_probs=113.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++.++..+..+|+..||+|..+.++.+|++.+... .|||||+|+.||+++|++++++||+.. +.+||
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~pi 204 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPV 204 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCCHHHHHHHHHHH--CCSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 57999999999999999999999999999999999999999874 499999999999999999999999876 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+...++++.|+++||.||++.++|...|++++++.+
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999876543
No 81
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.77 E-value=5.2e-18 Score=158.79 Aligned_cols=122 Identities=23% Similarity=0.475 Sum_probs=113.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++..+..+..+|...||+|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~~~--~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILALD--PDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHHC--TTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 3589999999999999999999999999999999999998876 4599999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+.+...++++.||++||.||++.++|...|+.++++...
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887553
No 82
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.76 E-value=3.1e-18 Score=159.86 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=104.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GY-RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gy-eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
+++||||||++..+..++.+|+.. || .|..+.++.+|++.+... ..|||||+|+.||+++|+++++.|++.. +.+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 79 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAEAIDGLVRLKRFD--PSN 79 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC------CHHHHHHHHHHC--TTS
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCchHHHHHHHHHhC--CCC
Confidence 469999999999999999999987 88 678899999999999761 2499999999999999999999999875 789
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccCC
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLGG 169 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~~ 169 (720)
|||++|+..+.+...++++.||++||.||++.++|..+|+.++++...+..
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~~~ 130 (154)
T 2qsj_A 80 AVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPR 130 (154)
T ss_dssp EEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBCCG
T ss_pred eEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEcCH
Confidence 999999999889999999999999999999999999999999998876543
No 83
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.76 E-value=1.6e-18 Score=157.19 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=109.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+++||||||++..+..++.+|+..++.|..+.++.+|++.+.. . |||||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 77 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHK--SPASL 77 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTT--CCCEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCC--CCCCE
Confidence 5799999999999999999999888899999999999987754 4 99999999999999999999999876 88999
Q ss_pred EEEeccCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSI-----SMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~-----e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|+..+. +...+++..||++||.||++.++|..+|++++.+...
T Consensus 78 i~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 78 ILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred EEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 999999874 6677899999999999999999999999998876654
No 84
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.76 E-value=8.3e-18 Score=154.57 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=108.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+..+|... |.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+|||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii 76 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRTGVDFLTEVRERW--PETVRI 76 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEE
Confidence 48999999999999999999876 9999999999999999874 599999999999999999999999875 789999
Q ss_pred EEeccCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLK-GAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~-GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|++.+.....+++.. ||++||.||++.++|..+|+.++++..
T Consensus 77 ~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 77 IITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp EEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 99999988888899976 599999999999999999999887654
No 85
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.76 E-value=5.4e-18 Score=168.32 Aligned_cols=119 Identities=24% Similarity=0.374 Sum_probs=111.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
||++||||||++.++..+..+|+..| .|..+.++.+|++.+ ..|||||+|+.||+++|++++++|++.. +.+|
T Consensus 1 Mm~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 73 (220)
T 1p2f_A 1 MMWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETR--PETW 73 (220)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 67899999999999999999999888 888999999999876 3499999999999999999999999876 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|++.+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 74 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 119 (220)
T 1p2f_A 74 VILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK 119 (220)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999998754
No 86
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.76 E-value=2.9e-18 Score=172.99 Aligned_cols=124 Identities=26% Similarity=0.458 Sum_probs=114.4
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..|+++||||||++.++..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++. +.
T Consensus 2 ~~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~~~~~lr~~---~~ 76 (238)
T 2gwr_A 2 DTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMNGIDVCRVLRAD---SG 76 (238)
T ss_dssp CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHTT---CC
T ss_pred CcccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CC
Confidence 3466899999999999999999999999999999999999999977 349999999999999999999999975 37
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
+|||++|+..+...+.++++.||++||.||++.++|..+|+.++++...
T Consensus 77 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 125 (238)
T 2gwr_A 77 VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 (238)
T ss_dssp CCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSS
T ss_pred CcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999988899999999999999999999999999999887644
No 87
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=3.9e-18 Score=170.22 Aligned_cols=121 Identities=32% Similarity=0.454 Sum_probs=113.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++. +.+|
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~ 77 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPGMSGTDVCKQLRAR---SSVP 77 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHH---CSCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHcC---CCCC
Confidence 67899999999999999999999999999999999999999976 349999999999999999999999984 5799
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
||++|+..+.....++++.||++||.||++.++|..+|+.++++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 123 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999998899999999999999999999999999999998753
No 88
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.2e-17 Score=153.36 Aligned_cols=123 Identities=19% Similarity=0.276 Sum_probs=110.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC----CCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCR----PHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~----~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|++++++|++...
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 36899999999999999999999888 999999999999999751 135999999999999999999999998754
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.+.+|||++|+..+.+...++++.||++||.||++.++|..++......
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999887765443
No 89
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.75 E-value=8.1e-18 Score=186.01 Aligned_cols=122 Identities=24% Similarity=0.372 Sum_probs=113.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++.++..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 589999999999999999999999999999999999999987 349999999999999999999999986545789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++|++.+.+...+|++.||+|||.||++.++|...|+.+++...
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 90
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.75 E-value=1.8e-17 Score=149.94 Aligned_cols=121 Identities=22% Similarity=0.312 Sum_probs=109.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC-CCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS-ISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~dGieLL~~Ir~~~~~p~ip 119 (720)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+... ..|||||+|+.||+ ++|++++++|++.. +.+|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~--~~~~ 81 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREID--PNMP 81 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHC--TTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcC--CCCC
Confidence 57999999999999999999999999999999999999999863 15999999999997 99999999999875 7899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|+..+.+...+++..| +||.||++.++|..+|++++++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred EEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999888888887776 8999999999999999999887654
No 91
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.75 E-value=5.6e-18 Score=169.12 Aligned_cols=122 Identities=26% Similarity=0.425 Sum_probs=114.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+.||+++|+++++.|++.. +.+||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~--~~~~i 82 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPV 82 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 3699999999999999999999999999999999999999987 4599999999999999999999999876 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
|++|++.+.+...++++.||++||.||++.++|...|+.++++...
T Consensus 83 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 128 (233)
T 1ys7_A 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 128 (233)
T ss_dssp EEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccc
Confidence 9999999988889999999999999999999999999999987654
No 92
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.75 E-value=1.3e-17 Score=158.71 Aligned_cols=128 Identities=25% Similarity=0.373 Sum_probs=103.5
Q ss_pred cccccccCC---ccEEEEEecCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHH
Q 042954 32 RWESFLPRM---VLRVLLVEADDSTRQIISALLRKCG-YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALL 106 (720)
Q Consensus 32 ~~~~~l~~m---~~rVLIVDDd~~~r~~L~~lL~~~g-yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL 106 (720)
-|..+..+| +++||||||++..+..++.+|+..+ +.+ ..+.++.+|++.+... .|||||+|+.||+++|++++
T Consensus 13 ~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~l~ 90 (164)
T 3t8y_A 13 GLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLNGIEAL 90 (164)
T ss_dssp -----------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHH
T ss_pred CcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHH
Confidence 566666666 5799999999999999999999874 444 4699999999999874 49999999999999999999
Q ss_pred HHHHhccCCCCCeEEEEeccCCHH--HHHHHHHcCCcEEEeCCCC---------HHHHHHHHHHHHhhc
Q 042954 107 TLVMEHDVCKNIPVIMMSLHDSIS--MVLKCMLKGAADFLIKPVR---------RNELRNLWQHVWRRH 164 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLTs~~d~e--~~~~Al~~GA~dYL~KP~~---------~~eL~~~l~~vlr~~ 164 (720)
++|++.. + +|||++|+..+.. .+.++++.||++||.||++ .++|...|+.++...
T Consensus 91 ~~lr~~~--~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~~ 156 (164)
T 3t8y_A 91 KLIMKKA--P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNVD 156 (164)
T ss_dssp HHHHHHS--C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTSC
T ss_pred HHHHhcC--C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCCC
Confidence 9999876 5 8999999987644 6779999999999999999 677777777776543
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.75 E-value=2.4e-17 Score=151.64 Aligned_cols=120 Identities=18% Similarity=0.345 Sum_probs=106.3
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.+++||||||++..+..+..+|+.. +|.++ .+.++.+|++.+... .|||||+|+.||+++|+++++.|++.. +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~ 83 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLDGVLLAQNISQFA--HK 83 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSCHHHHHHHHTTST--TC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHccC--CC
Confidence 4579999999999999999999876 79854 799999999999874 499999999999999999999999865 67
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
++||++|+..+ ...++++.||.+||.||++.++|..+|+.+++...
T Consensus 84 ~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 84 PFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp CEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 88999998854 57789999999999999999999999999887654
No 94
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.74 E-value=8.1e-18 Score=154.82 Aligned_cols=123 Identities=20% Similarity=0.363 Sum_probs=104.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc---CCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD---VCK 116 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~---~~p 116 (720)
|.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. ..+
T Consensus 9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCC
Confidence 457999999999999999999999999999999999999999874 599999999999999999999999742 236
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
.+|||++|+........ ..||++||.||++.++|..+|+.++++..+.
T Consensus 87 ~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~~ 134 (140)
T 3c97_A 87 RASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAEG 134 (140)
T ss_dssp CCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred ceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCCC
Confidence 78999999876544322 7899999999999999999999998876653
No 95
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.74 E-value=2.5e-18 Score=172.51 Aligned_cols=123 Identities=21% Similarity=0.312 Sum_probs=114.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG-YRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g-yeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++||||||++.++..++.+|...| |.++ .+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~ 76 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGNGIELCRDLLSRM--PDL 76 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEEHHHHHHHHHHHC--TTC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--CCC
Confidence 4799999999999999999999886 8855 699999999999873 499999999999999999999999875 889
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcccc
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLL 167 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l 167 (720)
|||++|++.+.+...++++.||++||.||++.++|..+|+.++++..++
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~ 125 (225)
T 3c3w_A 77 RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLL 125 (225)
T ss_dssp EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeee
Confidence 9999999999999999999999999999999999999999999987664
No 96
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=5.9e-17 Score=148.24 Aligned_cols=118 Identities=21% Similarity=0.260 Sum_probs=108.3
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC-
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK- 116 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p- 116 (720)
...+.+||||||++..+..++.+|+..||+|..+.++.+|++.+... .||||| ||+++|+++++.|++. +
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~~~~g~~~~~~l~~~---~~ 85 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEK---HS 85 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----ECSTTHHHHHHHHHHH---ST
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----EcCccHHHHHHHHHhc---CC
Confidence 34567999999999999999999999999999999999999999874 599999 8999999999999986 5
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPV-RRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~ 164 (720)
.+|||++|+..+.+...++++.||++||.||+ +.++|..+|+.++++.
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999 9999999999987654
No 97
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.73 E-value=3.8e-18 Score=170.71 Aligned_cols=125 Identities=10% Similarity=0.017 Sum_probs=110.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHHH-HHcCCCCceEEEEeccCCCCCHHHHHHHHHh-ccCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYRVAA-VPDGLAAWET-LKCRPHSIDLVLTEVELPSISGFALLTLVME-HDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~-A~sg~eAle~-L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~-~~~~ 115 (720)
++++||||||++.++..++.+|+. .||.|+. +.++.+++.. +.. ..|||||+|+.||+++|++++++|++ ..
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~~-- 81 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHISC-- 81 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHHHC--
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHhhC--
Confidence 467999999999999999999985 6898865 5667766653 554 45999999999999999999999998 55
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccccC
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSLLG 168 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~l~ 168 (720)
+.+|||++|++.+.+....+++.||++||.||++.++|..+|+.++++..++.
T Consensus 82 ~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~ 134 (225)
T 3klo_A 82 PDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLT 134 (225)
T ss_dssp TTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCC
T ss_pred CCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeC
Confidence 78999999999998889999999999999999999999999999999877643
No 98
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.72 E-value=1.9e-17 Score=176.47 Aligned_cols=121 Identities=21% Similarity=0.293 Sum_probs=110.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRK-CGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+.+||||||++.++..++.+|.. .||+|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 45799999999999999999964 58999999999999999987 3499999999999999999999999865457899
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||++|++.+.+.+.+|++.||+|||.||++.++|..+|+.+++.
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~~ 139 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRS 139 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887543
No 99
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.72 E-value=2.5e-17 Score=144.45 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=106.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|++....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 4899999999999999999999999999999999999999874 59999999999999999999999987555789999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
++|+..+.. .++..|+.+||.||++.++|...|+.+++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 999988766 89999999999999999999998887644
No 100
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.71 E-value=2.3e-17 Score=152.75 Aligned_cols=112 Identities=19% Similarity=0.337 Sum_probs=95.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
..+||||||++..+..++.+|+.. ||.++ .+.++.+|++.+... ..|||||+|+.||+++|++++++|++.. + +
T Consensus 13 ~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~--~-~ 88 (145)
T 3kyj_B 13 PYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRHAKLKT--R-A 88 (145)
T ss_dssp SEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC-TTCCEEEECTTSCCCTTCHHHHHHHHHC--C-C
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--C-C
Confidence 469999999999999999999988 89865 799999999999874 1599999999999999999999999875 4 8
Q ss_pred eEEEEec--cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHH
Q 042954 119 PVIMMSL--HDSISMVLKCMLKGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 119 pVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~ 156 (720)
|||++|+ ..+.+.+.++++.||++||.||++..+|...
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 9999998 6666778899999999999999996655443
No 101
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.70 E-value=2.6e-17 Score=150.82 Aligned_cols=120 Identities=25% Similarity=0.284 Sum_probs=102.9
Q ss_pred ccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc-CCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC-RPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 37 l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~-~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
.+....+||||||++..+..++.+|+..||+|..+.++.+|++.+.. .. |||||+|+.||+++|+++++.|++..
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~-- 86 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQT-- 86 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSS--
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--
Confidence 33445799999999999999999999999999999999999998875 44 99999999999999999999999854
Q ss_pred CCCeEEEEe-ccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMS-LHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLT-s~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+.+|||++| +..+... .+++ +++||.||++.++|...|+.++++.
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 789999999 8876665 6666 9999999999999999998876543
No 102
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.70 E-value=3.9e-17 Score=178.76 Aligned_cols=123 Identities=22% Similarity=0.274 Sum_probs=110.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRK-CGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+++||||||++.++..++.+|+. .+|+|..+.++.+|++.+... ..|||||+|+.||+++|++++++|++.. +.++
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~--~~~~ 79 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSG--KVHS 79 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHT--CEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCce
Confidence 47999999999999999999988 578999999999999999762 1499999999999999999999999876 6788
Q ss_pred EEEEeccCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhccc
Q 042954 120 VIMMSLHDSI-----SMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 120 VIvLTs~~d~-----e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
||++|++.+. ..+.+|+..||.+||.||++.++|..+|+++++....
T Consensus 80 ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~~ 131 (400)
T 3sy8_A 80 VILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQD 131 (400)
T ss_dssp EEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTTS
T ss_pred EEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhhh
Confidence 8888888776 6778899999999999999999999999999876653
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.69 E-value=9.5e-19 Score=155.98 Aligned_cols=120 Identities=24% Similarity=0.423 Sum_probs=110.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
+.+||||||++..+..+..+|...||.|..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 78 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPV 78 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHHC--TTSCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhhC--CCCCE
Confidence 3589999999999999999999889999999999999999865 4599999999999999999999999875 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|++|+..+.+...++++.||++||.||++.++|...|+.+++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99999998888889999999999999999999999999988754
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.69 E-value=6.4e-17 Score=157.93 Aligned_cols=116 Identities=12% Similarity=0.135 Sum_probs=105.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.++||||||++..+..+..+|...||.|..+.++.+|+ . ..|||||+|+.||+++|+ +++.++... +.+||
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~~i 82 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGT--PRTTL 82 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSC--TTCEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccC--CCCCE
Confidence 46999999999999999999999899999988888776 2 459999999999999999 999998864 78999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|++.+.+.+.++++.||++||.||++..+|...|+.++++..
T Consensus 83 i~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 83 VALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.67 E-value=3.6e-16 Score=155.39 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=107.7
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
++||||||++.++..++.+|...||+|..+.++.+|++.+.. ..||||| ||+++|+++++.|++.. +.+|||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----lp~~~g~~~~~~lr~~~--~~~~ii 72 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSDKNALSFVSRIKEKH--SSIVVL 72 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE----ECCTTHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE----eCCCCHHHHHHHHHhCC--CCCcEE
Confidence 479999999999999999999999999999999999999976 4599999 99999999999999872 489999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhc
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIKPV-RRNELRNLWQHVWRRH 164 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~ 164 (720)
++|++.+.+...++++.||++||.||+ +.++|..+|+.++++.
T Consensus 73 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 73 VSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999 9999999999998875
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.62 E-value=2.8e-15 Score=162.14 Aligned_cols=119 Identities=28% Similarity=0.443 Sum_probs=106.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYR-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gye-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
+++||||||++.++..|+.+|+.. +|+ |..+.++.+|++.+.. ..|||||+|+.||+++|++++++|++.. + +
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~dGlell~~l~~~~--p-~ 77 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRLR--P-M 77 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHSS--C-C
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHhcC--C-C
Confidence 479999999999999999999986 898 5579999999999987 3499999999999999999999999875 5 9
Q ss_pred eEEEEeccCCH--HHHHHHHHcCCcEEEeCCCC---------HHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLHDSI--SMVLKCMLKGAADFLIKPVR---------RNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~~d~--e~~~~Al~~GA~dYL~KP~~---------~~eL~~~l~~vlr~~ 164 (720)
|||++|+..+. +...++++.||+|||.||++ .++|...|+.+.+..
T Consensus 78 pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 78 PVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp CEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999998875 45889999999999999998 388888888887654
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.61 E-value=1.1e-15 Score=157.67 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=87.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRK-CGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
+.+||||||++.++..|..+|.. .||.|..+ ++.+++..+.. ..|||||+|+.||+++|++++++||+. .+|
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~----~~p 76 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER----GLP 76 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT----TCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC----CCC
Confidence 46899999999999999999976 47887655 55566555543 469999999999999999999999974 489
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCH
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRR 150 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~ 150 (720)
|||+|++.+.+...+|++.||+|||.||+..
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999999644
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.57 E-value=2.6e-15 Score=177.59 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=110.6
Q ss_pred EEEEEecCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC----CCHHHHHHHHH
Q 042954 43 RVLLVEADD-ST-------RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS----ISGFALLTLVM 110 (720)
Q Consensus 43 rVLIVDDd~-~~-------r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~----~dGieLL~~Ir 110 (720)
+||||||+. .+ ++.|+..|+..||+|..+.++.+|+..+... ..||+||+|++||+ ++|+++|++||
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~iR 80 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKLH 80 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHHH
Confidence 899999999 89 9999999999999999999999999999752 24999999999999 99999999999
Q ss_pred hccCCCCCeEEEEeccCC-HHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHhhcc
Q 042954 111 EHDVCKNIPVIMMSLHDS-ISMVLKCMLKGAADFLIKPVRRNE-LRNLWQHVWRRHS 165 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d-~e~~~~Al~~GA~dYL~KP~~~~e-L~~~l~~vlr~~~ 165 (720)
+.. +++||||+|+..+ .+.....+..||+|||.||++..+ |...|+.+++++.
T Consensus 81 ~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 81 ERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 986 7899999999887 777888999999999999999999 8899999998753
No 109
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.05 E-value=1.7e-10 Score=114.71 Aligned_cols=95 Identities=23% Similarity=0.377 Sum_probs=80.0
Q ss_pred CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 66 YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 66 yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
|.|..+.++.+|++.+... .|||||+|+.||+++|++++++|++.. +..++++++.....+.+.++++.||++||.
T Consensus 6 ~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~ 81 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 81 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEe
Confidence 4455588999999999874 499999999999999999999999876 556677777767788899999999999999
Q ss_pred CC--CCHHHHHHHHHHHHhhc
Q 042954 146 KP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 146 KP--~~~~eL~~~l~~vlr~~ 164 (720)
|| ++..+|...+...+...
T Consensus 82 kp~~~~~~~l~~~i~~~~~~~ 102 (237)
T 3cwo_X 82 NTAAVENPSLITQIAQTFGSQ 102 (237)
T ss_dssp SHHHHHCTHHHHHHHHHHTGG
T ss_pred CCcccChHHHHHHHHHHhCCC
Confidence 99 77778888888877544
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.02 E-value=4e-09 Score=116.33 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=105.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||+|||+...+..+...|... +.+....++.+++. +.. ..||+|++|+.||+|+|+++++.||.......+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTTT-SEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhcc-cceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 468999999999988888888654 77778888888863 333 35999999999999999999999998876678999
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++|+..+.+...+++..|++||+.||+...+|...+..+++...
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~ 272 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 272 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887776543
No 111
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=98.10 E-value=1.6e-06 Score=92.88 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHH-HhhhhcCCCcccccCCcccc-cccccccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAK-LETESLMPESKTGGASDELI-VSEKLNRS 289 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~-l~~Aa~LHDIGKI~iPD~IL-KPgkL~~~ 289 (720)
..|..||+.++..+|+++ |+++. ++.. +.+||+||||||+.+|+.|| ||++|++.
T Consensus 168 ~~Hs~~Va~la~~la~~l-gl~~~------~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~ 224 (328)
T 3tm8_A 168 SHHGVTVSTLSIALAQKL-GITDP------KKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPE 224 (328)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCCH------HHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHc-CcCHH------HHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHH
Confidence 899999999999999999 99988 8889 99999999999999999999 99999863
No 112
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=97.32 E-value=6.4e-05 Score=74.48 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc-cccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI-VSEK 285 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL-KPgk 285 (720)
...|+.+|+.++..+|+++ |++.+ .+++||+||||||+.+|+.|| ++++
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~-g~d~~---------~~~~AgLLHDIGK~~~~~~il~~~~~ 76 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERY-GYDKE---------KAGLAALLHDYAKELSDDEFLRLIDK 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCHH---------HHHHHHHHTTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CcCHH---------HHHHHHHHHHcCCcCCHHHHHHHHHh
Confidence 4899999999999999999 88543 488999999999999999999 8877
No 113
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=97.31 E-value=6.7e-05 Score=73.76 Aligned_cols=49 Identities=6% Similarity=-0.044 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc-cccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI-VSEK 285 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL-KPgk 285 (720)
...|+.+|+.++..+|+++ |++.+ .+++||+||||||+.+|+.|| ++++
T Consensus 19 ~~~Hs~~Va~~A~~lA~~~-g~~~~---------~~~~agLLHDIGk~~~~~~il~~~~~ 68 (188)
T 2o08_A 19 RYQHTIGVMETAIDLAKLY-GADQQ---------KAELAAIFHDYAKFRDKNEMRTLIRE 68 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCHH---------HHHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CcCHH---------HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4889999999999999999 88543 478999999999999999999 8876
No 114
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=97.28 E-value=7e-05 Score=73.74 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcccc-ccccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASDELI-VSEKL 286 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL-KPgkL 286 (720)
..|+.+|+.++..+|+++ |++.+ .+++||+||||||+.+|+.|| ++++.
T Consensus 21 ~~Hs~~Va~~A~~lA~~~-g~d~~---------~~~~AgLLHDiGk~~~~~~il~~~~~~ 70 (190)
T 3ccg_A 21 YKHSLGVMDTAVRLAGIY-NEDTE---------KARIAGLVHDCAKKLPGEKIIEICTNE 70 (190)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCHH---------HHHHHHHHTTTTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-CcCHH---------HHHHHHHHHHhcCCCCHHHHHHHHHHc
Confidence 889999999999999999 87544 488999999999999999999 88874
No 115
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.25 E-value=0.00031 Score=82.64 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHH
Q 042954 53 TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMV 132 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~ 132 (720)
..+.|.+.|++.||+|+.+.++.+|+..++.. ..++.||+|+.|+ +.+++++||+.. .++||++++.......+
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~ 91 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDV 91 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCccccc
Confidence 34456688888999999999999999999875 3699999999885 789999999987 89999999988653322
Q ss_pred HHHHHcCCcEEEeCCC-CHHHHHHHHHHHHhhc
Q 042954 133 LKCMLKGAADFLIKPV-RRNELRNLWQHVWRRH 164 (720)
Q Consensus 133 ~~Al~~GA~dYL~KP~-~~~eL~~~l~~vlr~~ 164 (720)
.-..-.++.+|+.+.. +.+.+...|.++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 92 SLNDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GGTTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1112346899999875 4555556666665555
No 116
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.08 E-value=0.0018 Score=57.36 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=85.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccC-CCCCHHHHHHHHHhccCCCCCeE
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVEL-PSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~M-P~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..||+|-.|-.+--.+++++....|.++......+ .-..|+|+|++.+ |. .|......+..-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccE
Confidence 47999999999999999999777899888654221 2348999999965 43 2333334456778
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++=.--+.+.+.+.++.||. ||..|++..-|..+|+..++.++
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh~ 120 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQHS 120 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC-
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhccC
Confidence 888888889999999999999 99999999999999999888654
No 117
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.86 E-value=0.0011 Score=67.51 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=70.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
..+||||||++.++..|..+|+.+|++|..+.+. ....+|+||+|+.||...+. ..+
T Consensus 11 ~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~--------------~~~ 67 (254)
T 2ayx_A 11 GKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG--------------RAV 67 (254)
T ss_dssp TEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS--------------SEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc--------------ceE
Confidence 4699999999999999999999999999887641 12459999999999875431 235
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|.++...... ....+...|+.||+...+|...+..++..
T Consensus 68 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 106 (254)
T 2ayx_A 68 VTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYLI 106 (254)
T ss_dssp EEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHTC
T ss_pred EEEecccCCC----cccccCCceeccccchHHHHHHHHHHhhh
Confidence 6666543110 11234568999999988888888876643
No 118
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=96.56 E-value=0.00047 Score=72.66 Aligned_cols=57 Identities=5% Similarity=-0.096 Sum_probs=46.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCc-----------ccc-cccccccc
Q 042954 224 LEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASD-----------ELI-VSEKLNRS 289 (720)
Q Consensus 224 v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD-----------~IL-KPgkL~~~ 289 (720)
....+.|+.+++.+++.+|+++ +++ ..+.+++||+||||||+.+|+ .++ ||+++++.
T Consensus 116 ~~~~~~hs~~va~~a~~la~~~-~~~--------~~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~ 184 (305)
T 3hc1_A 116 RSTLWAHSLGVARIAKLIAERT-GFL--------NPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQA 184 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCS--------CHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4556899999999999999998 664 246789999999999999986 335 88887653
No 119
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.67 E-value=0.2 Score=47.90 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=86.0
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC-C-CHHHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS-I-SGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~-dGieLL~~Ir~ 111 (720)
..+|||. |-++.=...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+-..|.. + .--++++.|++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4688888 88888889999999999999986 3467788888877 45999999887753 2 23467778877
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.. .++++|+ +-+..-......+...|++.++..--+..+....++..+...
T Consensus 96 ~g-~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 96 LG-ADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp TT-CTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cC-CCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 53 2466655 555555544445668999886765566667777777766543
No 120
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.48 E-value=0.028 Score=54.96 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=61.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEec-cCCCCCHH--HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE-----
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEV-ELPSISGF--ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL----- 144 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv-~MP~~dGi--eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL----- 144 (720)
+..+.++.+... ...+|+++++ .++.+.|+ +++++++.. .++|||.+++....+...++++.||++++
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 445555555432 2356999997 66666764 466666554 47999999999999999999999999995
Q ss_pred -eCCCCHHHHHHHHH
Q 042954 145 -IKPVRRNELRNLWQ 158 (720)
Q Consensus 145 -~KP~~~~eL~~~l~ 158 (720)
.+|++..+++..++
T Consensus 207 ~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 207 HFREIDVRELKEYLK 221 (237)
T ss_dssp HTTSSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 78899988877654
No 121
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=94.70 E-value=0.0092 Score=61.96 Aligned_cols=58 Identities=7% Similarity=-0.070 Sum_probs=46.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhc---CCCccchhhhHHHHHHhhhhcCCCcccccCCcccc-cccccc
Q 042954 224 LEAESAYMQNMQGLSQLKCRSAS---NTCSTDMERQNECAKLETESLMPESKTGGASDELI-VSEKLN 287 (720)
Q Consensus 224 v~~~g~Hv~Rva~~s~~lA~~l~---gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~IL-KPgkL~ 287 (720)
....+.|..+++.++..+|+++. +++.. ..+.+++|++||||||+.++..+. +|+.+.
T Consensus 115 ~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~------~~~~~~laGLLHdiGkl~l~~~~~~~~~~l~ 176 (281)
T 3i7a_A 115 MDEVWRTSIDVTAAACSLLQIYNKKHPGSGL------NYDTLTLAGLVHNIGALPVLTEAEAHPEMFT 176 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC------CHHHHHHHHHHTTTTHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCC------CHHHHHHHHHHHHCCHHHHHHhHHhhHHHhc
Confidence 34568999999999999998772 23333 567899999999999999988777 777654
No 122
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.57 E-value=0.017 Score=36.86 Aligned_cols=19 Identities=47% Similarity=0.618 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhccC.....
Q 042954 661 SSQRDAALTKFRLKRKDRC..... 679 (720)
Q Consensus 661 ~~~r~~~~~~~~~k~~~r~..... 679 (720)
+..|.+.|.||-||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4679999999999999983
No 123
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.32 E-value=1.1 Score=45.13 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc------CCCCCHHHHHHHHHhccCCCCCeEEEE
Q 042954 51 DSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE------LPSISGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~------MP~~dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
+.....+.+.++..|..+.. +.+.+++....+. .+|+|.+-+. .+...++++++++++. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~ 187 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAE 187 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEE
Confidence 33344444455666777665 8888898877653 4899975332 2334578999999863 6899999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeC
Q 042954 124 SLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+-.+.+.+.+++..||+++++=
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 188 GRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 99999999999999999999875
No 124
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=91.69 E-value=1.3 Score=45.84 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=70.4
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 57 ISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 57 L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
..+.|.+.||.|. .+.|...|.++.+. .+++| +.+..| +..-.++++.|++. .++|||+=.+-...
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~---G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI~TP 199 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAEI---GCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTA 199 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS---CCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHh---CCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCCCCH
Confidence 4455667799987 46777777666543 37777 555444 22337899999985 57999998888999
Q ss_pred HHHHHHHHcCCcEEEeCC-----CCHHHHHHHHHHHHh
Q 042954 130 SMVLKCMLKGAADFLIKP-----VRRNELRNLWQHVWR 162 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~KP-----~~~~eL~~~l~~vlr 162 (720)
+.+..|++.||++.++-. -++..+...+..+++
T Consensus 200 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 200 SDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999988643 335555555555544
No 125
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=91.64 E-value=0.05 Score=35.18 Aligned_cols=19 Identities=53% Similarity=0.677 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhccCCCc
Q 042954 664 RDAALTKFRLKRKDRCYDK 682 (720)
Q Consensus 664 r~~~~~~~~~k~~~r~~~k 682 (720)
|.+.|.||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999996544
No 126
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=90.75 E-value=2.6 Score=38.89 Aligned_cols=115 Identities=9% Similarity=-0.030 Sum_probs=77.7
Q ss_pred EEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHhcc
Q 042954 43 RVLLV----EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVMEHD 113 (720)
Q Consensus 43 rVLIV----DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~~~ 113 (720)
+|||. |-+..=...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+-..|.. +. --++++.|++..
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 55554 34556667888999999999984 5678888888877 45999999887753 22 236777887764
Q ss_pred CCCCCeEEEEeccC-----CHH-HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 114 VCKNIPVIMMSLHD-----SIS-MVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 114 ~~p~ipVIvLTs~~-----d~e-~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
.++++|+ +.+.. +.. ....+.+.|++.|+.---+..++...+...+
T Consensus 83 -~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 83 -LEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp -CTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred -CCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 2356665 55532 222 2445679999888866677777776666543
No 127
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=90.30 E-value=0.14 Score=51.01 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKT 273 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGK 273 (720)
...|+.||..++..||+.+ +. +.+.+.+||+|||||+
T Consensus 34 ~~~H~~rV~~~a~~la~~~-~~---------d~~~l~~AaLLHDIg~ 70 (220)
T 2pq7_A 34 DISHTFRVMENASEIASRE-KC---------DLQKAIIAALLHDIKR 70 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TC---------CHHHHHHHHHHTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHHcCCC
Confidence 4899999999999999888 54 3457899999999975
No 128
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.20 E-value=2.7 Score=42.35 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc------CCCCCHHHHHHHHHhccCCCCCeEEEE
Q 042954 51 DSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE------LPSISGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~------MP~~dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
+.....+.+.++..|..+.. +.+.+++....+. .+|+|.+-+. .+...++++++++++. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 33344444455666776655 8888888877653 4899865332 1234468999999874 6899999
Q ss_pred eccCCHHHHHHHHHcCCcEEEeC
Q 042954 124 SLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+-.+.+.+.+++..||+++++=
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999875
No 129
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=89.36 E-value=0.05 Score=56.76 Aligned_cols=45 Identities=4% Similarity=-0.180 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCc
Q 042954 225 EAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASD 278 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD 278 (720)
...+.|..+++.++..+|+++ + . ...+.+++||+||||||+.+++
T Consensus 123 ~~~~~hs~~va~~a~~la~~~-~--~------~~~e~a~~aGLLHDIGkl~l~~ 167 (297)
T 1vqr_A 123 QNFLKTCNEEATFIANWLNDE-D--K------KLSHLLVPCAMLLRLGIVIFSN 167 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-C--H------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-c--C------CCHHHHHHHHHHHHccHHHHHH
Confidence 345788899999999998765 2 2 3678899999999999999854
No 130
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=89.24 E-value=1.6 Score=42.96 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=69.5
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCC-CCH-HHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPS-ISG-FALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~-~dG-ieLL~~Ir~ 111 (720)
..+||++ |-++.-...+..+|+..||+|.... ..++.++.++. ..||+|.+-..|+. +.. -++++.|++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 7778888899999999999998632 45666677765 45999999887763 333 467788887
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
....+++||++--...+.+.. -..||+.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 642245787766555554433 4568876653
No 131
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=89.16 E-value=0.2 Score=49.69 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
...|+.||..++..||+.. +. ..+.+..||+|||||+.
T Consensus 26 ~~~H~~rV~~~a~~ia~~~-~~---------d~~~v~~AAlLHDig~~ 63 (209)
T 3b57_A 26 DWSHIKRVWKLSKEIQSKE-GG---------DLFTIELAALFHDYSDI 63 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CS---------CHHHHHHHHHHTTCCC-
T ss_pred CHHHHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHhccCcc
Confidence 3789999999999999877 54 34578999999999996
No 132
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=89.03 E-value=0.3 Score=53.03 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCC
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGAS 277 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iP 277 (720)
...|+.+|+.+++.+|+.+ +++.. +.++.||+|||||+..+.
T Consensus 51 r~~Hsl~V~~~a~~ia~~~-~~~~~--------~~~~~AaLLHDiG~~pfs 92 (371)
T 2hek_A 51 RFEHSLGVYHITERICESL-KVKEK--------ELVKLAGLLHDLGHPPFS 92 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCTTH--------HHHHHHHHTTTTTCCSSS
T ss_pred hhHHHHHHHHHHHHHHHHc-CCCHH--------HHHHHHHHHHhcCccccc
Confidence 3789999999999999999 77542 578899999999998653
No 133
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=88.94 E-value=4.1 Score=41.57 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=76.3
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCH-HHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELP-SISG-FALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dG-ieLL~~Ir~ 111 (720)
..+||++ |-+..=...+..+|+..||+|+. --..++.++.+.. ..+|+|.+-..|. .+.. -++++.|++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4588888 67778888999999999999864 3456667777766 4599999988776 3443 478888888
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.. +.++|++--.....+. +-..||+.|..-. .+....++.++.
T Consensus 201 ~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~~ 243 (258)
T 2i2x_B 201 NG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAIIA 243 (258)
T ss_dssp TT--CCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHHT
T ss_pred cC--CCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHHc
Confidence 65 5677776555555443 2377876665433 445555555544
No 134
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=88.49 E-value=0.12 Score=53.31 Aligned_cols=43 Identities=9% Similarity=-0.159 Sum_probs=36.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 224 LEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 224 v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
....+.|..+++.+++.+|+.+ +++ .+.++.|++||||||+.+
T Consensus 103 ~~~~~~hs~~~a~~a~~la~~~-~~~---------~~~~~~agLLhdiGkl~l 145 (275)
T 3m1t_A 103 LADFWGNTFEVAIICQELAKRL-GTL---------PEEAFTCGILHSIGELLI 145 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TSC---------HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCC---------HHHHHHHHHHHHccHHHH
Confidence 4556899999999999999998 663 346899999999999976
No 135
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=88.37 E-value=0.21 Score=50.50 Aligned_cols=39 Identities=3% Similarity=0.026 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
...|+.||..++..||+.. +. +.+.++.||+|||||+.-
T Consensus 26 ~~~H~~rV~~~a~~ia~~~-~~---------d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 26 DWYHIRRVTLMAKAIGEQE-KV---------DVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TC---------CHHHHHHHHHHHSTTC--
T ss_pred cHHHHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHhhccccc
Confidence 4789999999999999876 54 345789999999999964
No 136
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=88.04 E-value=0.15 Score=51.59 Aligned_cols=38 Identities=5% Similarity=0.054 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
...|+.||..++..||+.. +. ..+.+++||+|||||+.
T Consensus 31 ~~~H~~rV~~~a~~ia~~~-~~---------d~~ll~lAAlLHDigk~ 68 (231)
T 2pjq_A 31 GRDHLQRVNRLARRLAKDE-GA---------NLNLTLAAAWLHDVIDD 68 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TC---------CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHHcCCcc
Confidence 4789999999999999877 54 44688999999999983
No 137
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=87.67 E-value=0.15 Score=52.99 Aligned_cols=44 Identities=14% Similarity=-0.142 Sum_probs=36.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 224 LEAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 224 v~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
....+.|..+++.+++.+|+.+ +.. ..+.+++|++||||||+.+
T Consensus 106 ~~~~~~hs~~~A~~a~~la~~~-~~~--------~~~~~~~agLLhdiGkl~l 149 (288)
T 3ljx_A 106 YAAYWQKSLARAVALQSITAQA-STV--------APKEAFTLGLLADVGRLAL 149 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-SSS--------CHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCC--------CHHHHHHHHHHHhccHHHH
Confidence 3446899999999999999988 553 2467899999999999986
No 138
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=87.49 E-value=0.16 Score=56.38 Aligned_cols=46 Identities=2% Similarity=-0.296 Sum_probs=38.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhcCCC-ccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 224 LEAESAYMQNMQGLSQLKCRSASNTC-STDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 224 v~~~g~Hv~Rva~~s~~lA~~l~gl~-~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
....+.|..+++.+++.+|+.+ +.. .. ..+.+++|++||||||+.+
T Consensus 276 ~~~~w~hs~~~A~~a~~LA~~~-~~~~~~------~~~~aflaGLLhDIGkl~l 322 (457)
T 3mem_A 276 YVDYWQQAIWQAQSAGILASMM-PRGQRP------LFGLAYLAGLLHNFGHLVL 322 (457)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHS-CGGGCC------CHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccccCC------CHHHHHHHHHHHHhhHHHH
Confidence 4557999999999999999988 553 22 5678999999999999986
No 139
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=87.46 E-value=2.1 Score=42.61 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=70.8
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEE--eccCC-CCC-HHHHHHHH
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLT--EVELP-SIS-GFALLTLV 109 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLl--Dv~MP-~~d-GieLL~~I 109 (720)
..+|||. |-+..=...+..+|+..||+|+.. -..++.++.+.+ ..+|+|.+ -..|. .+. --++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4588887 677888889999999999999873 356677788877 45999999 77765 333 34788888
Q ss_pred HhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 110 MEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 110 r~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++.....++||++--.....+. |-..||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 8875223678776555555543 33568887753
No 140
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=87.33 E-value=0.32 Score=48.87 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHH-HHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 227 ESAYMQNMQGLSQLK-CRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~l-A~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
...|+.||..++..| |+.. +++ .+.+.+||+||||||.
T Consensus 26 ~~~H~~rV~~~a~~i~a~~~-~~d---------~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 26 DIAHVERVYNNACYIAKREN-ITD---------TLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CSC---------CHHHHHHHHHTTTTCC
T ss_pred CHHHHHHHHHHHHHHHhhcc-CCC---------HHHHHHHHHHHcCCCC
Confidence 478999999999999 8766 553 3478899999999994
No 141
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.88 E-value=4.5 Score=43.18 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=75.4
Q ss_pred cccCCccEEEEEecCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 36 FLPRMVLRVLLVEADDSTRQIISALLRKC---GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 36 ~l~~m~~rVLIVDDd~~~r~~L~~lL~~~---gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
+...|.+++.|+|.|......|..+|... .|+|..+++.+.+.+.+++ ..+||+|+|-.+.... ...
T Consensus 16 ~~~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~~~--------~~~ 85 (373)
T 3fkq_A 16 YFQGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNIDK--------SEF 85 (373)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCCCG--------GGG
T ss_pred hccCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhhhh--------hhh
Confidence 34567899999999999999999999643 5899999999999999987 4599999998776521 111
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
. ....|++++.....+ ...-...+.|--..+++...|..++
T Consensus 86 ~--~~~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 86 K--RNCGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp C--SSCEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred c--ccCcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 1 345677777643221 0112346788878888876666554
No 142
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=85.75 E-value=0.24 Score=49.95 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 227 ESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
+..|+.||..++..||+.. +. +.+.++.||+|||||+.-.
T Consensus 26 ~~~H~~rV~~~a~~ia~~~-~~---------d~~~l~~AAlLHDig~~k~ 65 (223)
T 3djb_A 26 DWYHIRRVHKMAISLSEQE-GG---------NRFIIEMAALLHDVADEKL 65 (223)
T ss_dssp THHHHHHHHHHHHHHHTTT-CS---------CHHHHHHHHTTHHHHC--C
T ss_pred cHHHHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHhhcccccc
Confidence 4889999999999999655 43 4568999999999999533
No 143
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=85.33 E-value=0.32 Score=49.59 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
..|+.||..++..||+.. +. +.+.++.||+|||||+.
T Consensus 27 ~~H~~rV~~~a~~ia~~~-~~---------d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADD-DV---------DMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTS-CS---------CTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHc-CC---------CHHHHHHHHHHhhcccc
Confidence 679999999999999766 44 34578999999999996
No 144
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=85.23 E-value=1.8 Score=44.84 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=67.1
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-----HHHHHHHHhccCCCC-CeEEEEeccCCH
Q 042954 58 SALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELPSISG-----FALLTLVMEHDVCKN-IPVIMMSLHDSI 129 (720)
Q Consensus 58 ~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-----ieLL~~Ir~~~~~p~-ipVIvLTs~~d~ 129 (720)
.+.|.+.||.|. ...|...|.++.+. .+++| +.+-.|-.+| .++++.|++.. .+ +|||+=.+-...
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~~---G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAAL---GTATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHHH---TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHhc---CCCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCH
Confidence 344556689977 35677666555443 36666 6655553333 56789998843 56 999998888999
Q ss_pred HHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHh
Q 042954 130 SMVLKCMLKGAADFLIK-----PVRRNELRNLWQHVWR 162 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~K-----P~~~~eL~~~l~~vlr 162 (720)
+.+..|++.||++.++- --++..+...+..++.
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999998764 3345555555555444
No 145
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=85.22 E-value=3.6 Score=47.42 Aligned_cols=122 Identities=9% Similarity=0.047 Sum_probs=82.8
Q ss_pred cCCccEEEEE----ecCHHHHHH----HHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC----CCH
Q 042954 38 PRMVLRVLLV----EADDSTRQI----ISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS----ISG 102 (720)
Q Consensus 38 ~~m~~rVLIV----DDd~~~r~~----L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~----~dG 102 (720)
+....+|||. |-+..=... +..+|+..||+|+. .-..++.++.+.+ ..+|+|.+-..|.. +..
T Consensus 599 ~e~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~ 676 (763)
T 3kp1_A 599 EKTPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISHDDIHYKN 676 (763)
T ss_dssp HHSCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHH
T ss_pred hccCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCchhhHHH
Confidence 3446788888 444444432 35788999999986 3477888888887 45999999988875 344
Q ss_pred H-HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 103 F-ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 103 i-eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+ ++++.|++......++||+=-.....+. |-..||+.|..-.....++...|...++..
T Consensus 677 MkevIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 677 MKRIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 4 6777888775322366665433444432 458999999877777777777666655543
No 146
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=84.02 E-value=7.8 Score=39.97 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=78.4
Q ss_pred ccEEEEE----ecCHHHHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCC----C
Q 042954 41 VLRVLLV----EADDSTRQIISAL--------LRKC-GYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPS----I 100 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~l--------L~~~-gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~----~ 100 (720)
..+||+. |-+..=...+..+ |+.. ||+|+. .-..++.++.+.+ ..+|+|.+-..|.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCCccchH
Confidence 4567665 6667777778877 9999 999986 3467777788777 45999999998874 3
Q ss_pred CHH-HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 101 SGF-ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 101 dGi-eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
..+ ++++.|++....++++||+=-...+.+ .+.+.|++.|..--....++...|...+.
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 332 567777775422346665443333332 36678998888666777777666655443
No 147
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=83.46 E-value=11 Score=38.97 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=67.5
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc---CCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEA--DDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE---LPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDD--d~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~---MP~~dGieLL~~Ir~~~~~p 116 (720)
-|+|... ++.....+....+..|..+.. +.+.+++...++. .+|+|-+.-+ ... -+++.+.+|...- ..
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v-~~ 212 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGL-PS 212 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGS-CT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhC-cc
Confidence 5666432 233344445555667887654 8888887766653 3788877532 112 2366677776653 12
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++|||...+-.+.+.+.++++.||+++++-
T Consensus 213 ~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 213 SVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 789999999999999999999999999985
No 148
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.54 E-value=0.63 Score=51.17 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHhcC-----CCccchhhhHHHHHHhhhhcCCCcccccCC
Q 042954 228 SAYMQNMQGLSQLKCRSASN-----TCSTDMERQNECAKLETESLMPESKTGGAS 277 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~g-----l~~~~~~~~~~~~~l~~Aa~LHDIGKI~iP 277 (720)
-.|+..|+.+++.+|+.+ + +++. +.+.+..||+|||||+.-+.
T Consensus 57 f~HSLgV~~la~~l~~~l-~~~~~~~~~~------d~~~~~~AaLlHDiGh~Pfs 104 (410)
T 2q14_A 57 FQHSLGAFYLMSEAITQL-TSKGNFIFDS------EAEAVQAAILLHDIGHGPFS 104 (410)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTCCCCHH------HHHHHHHHHHHTTTTCCTTH
T ss_pred eehHHHHHHHHHHHHHHH-HhcCCCCCHH------HHHHHHHHHHHhccCCCccc
Confidence 579999999999999988 4 3333 67889999999999997653
No 149
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=80.33 E-value=0.93 Score=49.28 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 229 AYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 229 ~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
.|+.-|+.+++.+|+.+ |+++ +.++.||+|||||+.-+
T Consensus 78 ~HSl~Va~iar~ia~~l-~l~~---------~l~~~a~LlHDiGh~PF 115 (376)
T 2dqb_A 78 THTLEVAQVSRSIARAL-GLNE---------DLTEAIALSHDLGHPPF 115 (376)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCH---------HHHHHHHHHTTTTCCSS
T ss_pred HHHHHHHHHHHHHHHHc-CCCH---------HHHHHHHHHHhcCCCcc
Confidence 69999999999999999 8753 36789999999999754
No 150
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=78.97 E-value=7 Score=39.93 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+++++.||+.. +++|+++|+-+.. ...+..|.+.|+++++.-.+..+++...+..+-+
T Consensus 81 ~~~~v~~ir~~~--~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~ 145 (262)
T 2ekc_A 81 VLELSETLRKEF--PDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKK 145 (262)
T ss_dssp HHHHHHHHHHHC--TTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 346788888763 5799999864431 3456678899999999988888887766665533
No 151
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=78.36 E-value=22 Score=34.27 Aligned_cols=115 Identities=13% Similarity=0.036 Sum_probs=67.4
Q ss_pred EEEEEecCH--HHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHcCCCCceEEEEeccCC----CCCHHHHHHHHHhc
Q 042954 43 RVLLVEADD--STRQIISALLRKCGYRVAA----VPDGLAAWETLKCRPHSIDLVLTEVELP----SISGFALLTLVMEH 112 (720)
Q Consensus 43 rVLIVDDd~--~~r~~L~~lL~~~gyeV~~----A~sg~eAle~L~~~~~~pDLVLlDv~MP----~~dGieLL~~Ir~~ 112 (720)
..+++-+.. .....+.+.+++.|..+.. ..+..+.++.+.. ...|+|.++.... ...+++.+++|++.
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~ 156 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAGRKPIDDLITMLKV 156 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTTCCSHHHHHHHHHH
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccCCCCHHHHHHHHHH
Confidence 444444443 3334555666666776654 2344343333333 2378887763211 11357889999876
Q ss_pred cCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHh
Q 042954 113 DVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI-----KPVRRNELRNLWQHVWR 162 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~-----KP~~~~eL~~~l~~vlr 162 (720)
. +++||++-.+-. .+.+.++++.||+.++. +.-++.+....++..++
T Consensus 157 ~--~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 157 R--RKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp C--SSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred c--CCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 4 578888766654 78888999999998865 34455544444444443
No 152
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=78.26 E-value=14 Score=43.68 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=81.0
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCCC-C-CHHHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPS-I-SGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP~-~-dGieLL~~Ir~ 111 (720)
..+|+|. |-+..=...+..+|+..||+|+.. .+.++.++.+.+ ..+|+|.+-..|.. + ..-++++.|++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 4577776 345556667888999999999873 467888888877 45999998876653 2 24578888888
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
... .+++ ||+-+-.-......+.+.|+++|+..--+..++...+...+..
T Consensus 682 ~G~-~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~ 731 (762)
T 2xij_A 682 LGR-PDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEK 731 (762)
T ss_dssp TTC-TTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCC-CCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHH
Confidence 752 3544 3444422222334467899999998666877777777766643
No 153
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=77.80 E-value=12 Score=37.88 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=60.8
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
.+.+.+|+.+..+. .+|.|.+.-..|. .-|++.++++++.. ..++|||.+.+- +.+.+.+++..||++
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 47899998776653 4899998765542 24789999998751 137899999887 677888999999999
Q ss_pred EEe-----CCCCHHHHHHHHHHHH
Q 042954 143 FLI-----KPVRRNELRNLWQHVW 161 (720)
Q Consensus 143 YL~-----KP~~~~eL~~~l~~vl 161 (720)
+.+ +.-++.+....+..++
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHH
Confidence 875 3344554444444443
No 154
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=77.55 E-value=1.2 Score=45.87 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=47.7
Q ss_pred ccEEEEEecC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHcCCCCceEEEEeccCC-CC--CHHHHHHHHHhcc
Q 042954 41 VLRVLLVEAD--DSTRQIISALLRKCGYRVAAVPDGLA--AWETLKCRPHSIDLVLTEVELP-SI--SGFALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd--~~~r~~L~~lL~~~gyeV~~A~sg~e--Ale~L~~~~~~pDLVLlDv~MP-~~--dGieLL~~Ir~~~ 113 (720)
|.+||||+++ +.-...|.++|+..||+|.......- -.+.|. .||+||++-... .+ .-++.|+..-+.
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d~~~~~l~~~~~~~L~~yV~~- 78 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSDYPAERMTAQAIDQLVTMVKA- 78 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEESCCGGGBCHHHHHHHHHHHHT-
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcCCccccCCHHHHHHHHHHHHh-
Confidence 5699999988 66778899999999999887553321 123443 399998863221 12 223333333222
Q ss_pred CCCCCeEEEEeccC
Q 042954 114 VCKNIPVIMMSLHD 127 (720)
Q Consensus 114 ~~p~ipVIvLTs~~ 127 (720)
.--+|++.+..
T Consensus 79 ---GGgLi~~gG~~ 89 (259)
T 3rht_A 79 ---GCGLVMLGGWE 89 (259)
T ss_dssp ---TCEEEEECSTT
T ss_pred ---CCeEEEecCcc
Confidence 34677776643
No 155
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=76.74 E-value=12 Score=43.95 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=80.4
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCCC-C-CHHHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPS-I-SGFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP~-~-dGieLL~~Ir~ 111 (720)
..+|+|. |-+..=...+..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-..|.. + ..-++++.|++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4678776 455566667888999999999873 367888888877 45999998877653 2 24578888888
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.. ..+++ ||+-+-.-......+.+.|++.|+.--.+..++...|...++
T Consensus 674 ~G-~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 674 LG-RPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp TT-CTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cC-CCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 75 23544 444542222233456789999999866777777766666554
No 156
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=76.41 E-value=24 Score=38.49 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=69.5
Q ss_pred ccEEEEEe----cCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEecc---------C--CCCCHH
Q 042954 41 VLRVLLVE----ADDSTRQIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVE---------L--PSISGF 103 (720)
Q Consensus 41 ~~rVLIVD----Dd~~~r~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~---------M--P~~dGi 103 (720)
...++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. .+|.|++-+. + .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 35677775 233455566555444466665 48899999887764 4899888321 0 012346
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.++.++.+.....++|||.--+-.+...+.+++.+||+....=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 7777776542224799999888889999999999999988754
No 157
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=75.59 E-value=26 Score=34.15 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=72.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEe----------ccCC----CCCHHH
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTE----------VELP----SISGFA 104 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlD----------v~MP----~~dGie 104 (720)
|..+|+++-..+.+...+++++...+.++.. ..+.++++...+.....+|+||.- +..| ..+|++
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~D 82 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFD 82 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHH
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhH
Confidence 5579999999999999999988876666654 567787877665422458988842 1233 456777
Q ss_pred HHHHHHhccCCCCCeEEEEecc---CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLH---DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~---~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
+++.|....... -+|-+++-. .+...+.+.+.....-|.. -+.+++...|+.+.+.
T Consensus 83 il~al~~a~~~~-~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~--~~~~e~~~~i~~l~~~ 141 (196)
T 2q5c_A 83 TMRAVYNAKRFG-NELALIAYKHSIVDKHEIEAMLGVKIKEFLF--SSEDEITTLISKVKTE 141 (196)
T ss_dssp HHHHHHHHGGGC-SEEEEEEESSCSSCHHHHHHHHTCEEEEEEE--CSGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC-CcEEEEeCcchhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHHHHC
Confidence 777665554322 233333322 2344455555554444433 3445666666665543
No 158
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=75.02 E-value=5.7 Score=41.03 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHD------SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~------d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+++++.||+.. .++|||+|+-+. -...+.+|.++|+++.+.-.+..++....+..+-+
T Consensus 83 ~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~ 146 (267)
T 3vnd_A 83 FDIITKVRAQH--PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKA 146 (267)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHH
Confidence 67778888753 578999997533 24567888899999999988888876665555433
No 159
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=73.89 E-value=1.5 Score=43.46 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=36.0
Q ss_pred hhhhhHHHHHHHHHHHHH----HHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCcc
Q 042954 225 EAESAYMQNMQGLSQLKC----RSASNTCSTDMERQNECAKLETESLMPESKTGGASDE 279 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA----~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD~ 279 (720)
+-...|+.+|+.++..+| ..+ + ..- +.+.+.+++++||||++.+-|-
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~-~-~~v------D~~~~~~~aLlHDi~E~~~GDi 80 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKF-G-GNV------NAERIALLAMYHDASEVLTGDL 80 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHS-C-CCC------CHHHHHHHHHHTTTTHHHHCCC
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhc-C-ccc------CHHHHHHHHHhcccccccCCCC
Confidence 345889999999999999 444 2 111 5568889999999999987663
No 160
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=73.73 E-value=13 Score=36.36 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHH
Q 042954 65 GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 65 gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al 136 (720)
+..+. .+.+..++.+.... ..|.|+++-..+. .-|+++++.+++.. ++|||+.-+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHH
Confidence 44433 47788888776653 3899999765432 23688888887653 6899988777 788999999
Q ss_pred HcCCcEEEe
Q 042954 137 LKGAADFLI 145 (720)
Q Consensus 137 ~~GA~dYL~ 145 (720)
..||+.+..
T Consensus 183 ~~Ga~gv~v 191 (221)
T 1yad_A 183 QAGADGIAV 191 (221)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998765
No 161
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=73.70 E-value=7.4 Score=39.78 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHD------SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~------d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
++++++.||+.. .++||++|+-+. -...+..+.++|+++++.-.+..+++...+..+-+
T Consensus 81 ~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~ 145 (268)
T 1qop_A 81 CFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALR 145 (268)
T ss_dssp HHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 457788888763 468999886332 14567778899999999988887777666655543
No 162
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=73.60 E-value=13 Score=36.10 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=56.3
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCC-CCeEEEEeccCCHHHHHHH
Q 042954 59 ALLRKCGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCK-NIPVIMMSLHDSISMVLKC 135 (720)
Q Consensus 59 ~lL~~~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p-~ipVIvLTs~~d~e~~~~A 135 (720)
+..+..|..+. .+.+..++.+.+. ..+|+|++ .| +..|++.++++++.. + ++|||+..+-. .+.+.++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~---~G~d~v~v---~~t~~~g~~~~~~l~~~~--~~~ipvia~GGI~-~~~i~~~ 165 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE---AGAQALKI---FPSSAFGPQYIKALKAVL--PSDIAVFAVGGVT-PENLAQW 165 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH---TTCSEEEE---TTHHHHCHHHHHHHHTTS--CTTCEEEEESSCC-TTTHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH---CCCCEEEE---ecCCCCCHHHHHHHHHhc--cCCCeEEEeCCCC-HHHHHHH
Confidence 34455565533 3788888877654 34899886 22 224788899998754 4 68999888776 7788889
Q ss_pred HHcCCcEEEeC
Q 042954 136 MLKGAADFLIK 146 (720)
Q Consensus 136 l~~GA~dYL~K 146 (720)
++.||+.+..=
T Consensus 166 ~~~Ga~gv~vG 176 (212)
T 2v82_A 166 IDAGCAGAGLG 176 (212)
T ss_dssp HHHTCSEEEEC
T ss_pred HHcCCCEEEEC
Confidence 99999998754
No 163
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=73.46 E-value=8.9 Score=38.17 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCC------HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDS------ISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d------~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
++++++.|++.. ++||++++.... .+.+..+++.||+..+.-....++....++.
T Consensus 68 ~~~~i~~i~~~~---~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~ 128 (248)
T 1geq_A 68 AFWIVKEFRRHS---STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEI 128 (248)
T ss_dssp HHHHHHHHHTTC---CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHH
T ss_pred HHHHHHHHHhhC---CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHH
Confidence 477888888753 579999885333 4677889999999999976666555444443
No 164
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=72.67 E-value=20 Score=37.05 Aligned_cols=121 Identities=13% Similarity=0.033 Sum_probs=83.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeE
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipV 120 (720)
.+.|-++-.++.+.+.+..+|....|.++.+.+..+.++.++.+.+.+|.+|+...- ..-..++..+.+.. --.|+
T Consensus 9 ~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~~--~~~~~~~~~L~~~g--~lLP~ 84 (289)
T 1r8j_A 9 QIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAAN--PSFRAVVQQLCFEG--VVVPA 84 (289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTS--TTHHHHHHHHHHTT--CCCCE
T ss_pred ceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeCC--CccHHHHHHHHHcC--ccccE
Confidence 467888899999999999999888899999999999999998887889999998722 23567888898876 56899
Q ss_pred EEEeccCCHHHHHH--HHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 121 IMMSLHDSISMVLK--CMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 121 IvLTs~~d~e~~~~--Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
|++..........- -+-.-....-...-..++|-..|.+++.++-
T Consensus 85 vil~~~~~~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~Fl 131 (289)
T 1r8j_A 85 IVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFL 131 (289)
T ss_dssp EEESCCC------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHHH
T ss_pred EEeccCccccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHHH
Confidence 98866422000000 0111112222233455677777777776654
No 165
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=72.66 E-value=2 Score=46.64 Aligned_cols=47 Identities=11% Similarity=-0.160 Sum_probs=36.2
Q ss_pred chhhhhhHHHH-HHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 223 YLEAESAYMQN-MQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 223 ~v~~~g~Hv~R-va~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
++...-.|... |+.++..+++..+...+- +...+..||+||||||+.
T Consensus 72 ~~GGLLeHtLerVa~~A~~l~~~YP~~~~~------Er~~l~~aALLHDIGKl~ 119 (393)
T 3kq5_A 72 PLCSLMNEGLLRGVNSLNHYIQNHPEATPL------ERYALFSAGLLLEVAHAV 119 (393)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHCTTCCHH------HHHHHHHHHHHTTTTHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCCch------HHHHHHHHHHHhccchhe
Confidence 66777788877 999999999877221111 367899999999999994
No 166
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=71.81 E-value=2.4 Score=42.01 Aligned_cols=47 Identities=6% Similarity=-0.057 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhc---CCCccchhhhHHH--HHHhhhhcCCCcccccCC
Q 042954 225 EAESAYMQNMQGLSQLKCRSAS---NTCSTDMERQNEC--AKLETESLMPESKTGGAS 277 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~---gl~~~~~~~~~~~--~~l~~Aa~LHDIGKI~iP 277 (720)
.++-.|.+||..++..+-..+. ++++. +. ..+..||+|||||.-.=+
T Consensus 18 ~vd~~ha~~V~~~A~~Lf~~l~~~~~l~~~------~~~~~lL~~Aa~LHdIG~~I~~ 69 (209)
T 3rf0_A 18 NIDREQARRVLETTEQLYTQWLAQNTKLVQ------PQLEALLKWAAMLHEVGLSINH 69 (209)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHCGGGCC------HHHHHHHHHHHHHTTGGGGTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcccccCc
Confidence 3457899999999998865542 34433 55 789999999999997533
No 167
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=71.09 E-value=22 Score=34.06 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=51.6
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
.+.+..++...... .+|.|+++-..|. ..+++.++++++.. ++||++.-+-. .+.+.++++.|++.
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~~~~Ga~g 186 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREVLKTGVDG 186 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHHHTTTCSE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHHHHcCCCE
Confidence 36788887665442 3899999865553 34788999988753 68988877666 77888889999998
Q ss_pred EEeC
Q 042954 143 FLIK 146 (720)
Q Consensus 143 YL~K 146 (720)
+..-
T Consensus 187 v~vg 190 (215)
T 1xi3_A 187 IAVI 190 (215)
T ss_dssp EEES
T ss_pred EEEh
Confidence 8543
No 168
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=68.73 E-value=45 Score=35.83 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred ccEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCCC------------CC
Q 042954 41 VLRVLLVE----ADDSTRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELPS------------IS 101 (720)
Q Consensus 41 ~~rVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP~------------~d 101 (720)
...+++|| +.+.+.+.++.+-+.. +..|. .+.+.++|.++.+. ..|.|.+-+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 35677775 3455666666666665 56654 38899999888764 3798888321 21 23
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.++++..+.+.....++|||.--+-.+...+.+++.+||+....=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 456666665422114689998888888999999999999888654
No 169
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=68.40 E-value=35 Score=29.81 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=35.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC 83 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~ 83 (720)
|.+-|++..-|+..+..++.++++.||.|.++.++.+..+.+++
T Consensus 1 mnivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 1 MNIVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp CCEEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred CcEEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 34556666778888889999999999999999999987766543
No 170
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=66.31 E-value=47 Score=34.54 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=60.0
Q ss_pred HHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCC-------CCHHHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 58 SALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPS-------ISGFALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 58 ~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~-------~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
.+.++..|..|.. +.+..+|...... .+|.|+++-.-++ ...++++.++++. .++|||+-.+-.+.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~ 184 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADG 184 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSH
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCH
Confidence 3445555766655 7888888776653 3798888532221 2467888888865 36899998888888
Q ss_pred HHHHHHHHcCCcEEEeC
Q 042954 130 SMVLKCMLKGAADFLIK 146 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~K 146 (720)
+.+.+++..||+....-
T Consensus 185 ~~v~~al~~GAdgV~vG 201 (328)
T 2gjl_A 185 RGLVAALALGADAINMG 201 (328)
T ss_dssp HHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999887653
No 171
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=66.15 E-value=43 Score=34.56 Aligned_cols=89 Identities=16% Similarity=0.040 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccC-C--CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 53 TRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVEL-P--SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~M-P--~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
....+....+..|.++.. +.+.+|+...+. ..+|+|=+.-+- - ..| ++...+|...-. .++++|.-++-.+
T Consensus 157 ~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~---~ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip-~~~~vIaesGI~t 231 (272)
T 3tsm_A 157 LAKELEDTAFALGMDALIEVHDEAEMERALK---LSSRLLGVNNRNLRSFEVN-LAVSERLAKMAP-SDRLLVGESGIFT 231 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHTT---SCCSEEEEECBCTTTCCBC-THHHHHHHHHSC-TTSEEEEESSCCS
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh---cCCCEEEECCCCCccCCCC-hHHHHHHHHhCC-CCCcEEEECCCCC
Confidence 344444445567887665 888888876654 347888765322 1 222 455555554321 4789999999999
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 042954 129 ISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~K 146 (720)
.+.+.++.+.||+.+|+-
T Consensus 232 ~edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 232 HEDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999874
No 172
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=66.08 E-value=22 Score=36.23 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCEEE--EECCHHHHHHHHHcCCCCceEEEE-eccCC---CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc
Q 042954 65 GYRVA--AVPDGLAAWETLKCRPHSIDLVLT-EVELP---SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK 138 (720)
Q Consensus 65 gyeV~--~A~sg~eAle~L~~~~~~pDLVLl-Dv~MP---~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~ 138 (720)
|+.+. .+.+.+++....+. ..|.|+. -.... +..+.++++++++. .++|||+..+-.+.+.+.+++..
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 66555 35677777665543 2566633 00001 23457899999874 47999999999999999999999
Q ss_pred CCcEEEeC
Q 042954 139 GAADFLIK 146 (720)
Q Consensus 139 GA~dYL~K 146 (720)
||+.+++=
T Consensus 200 GAdgViVG 207 (264)
T 1xm3_A 200 GADGVLLN 207 (264)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99999865
No 173
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=65.28 E-value=43 Score=32.47 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEecc-----CC----CCCHHHHHHHHHhccCCCCCeEE
Q 042954 53 TRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVE-----LP----SISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 53 ~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~-----MP----~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
+.+.++.+-+.. +..+. .+.+..++.++.+. ..|+|.+-.. .. ...++++++++++.. ++|||
T Consensus 106 ~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~---~ipvi 179 (223)
T 1y0e_A 106 LDELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV---DAKVI 179 (223)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC---CSEEE
T ss_pred HHHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC---CCCEE
Confidence 344444444443 55554 47788888776543 3788765321 01 123467888888753 68999
Q ss_pred EEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 122 MMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 122 vLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
...+-.+.+.+.+++..||+.++.=
T Consensus 180 a~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 180 AEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred EecCCCCHHHHHHHHHcCCCEEEEC
Confidence 9888889999999999999988765
No 174
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=64.80 E-value=70 Score=29.45 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred ccEEEEEecCH-HHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADD-STRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~-~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.++++|+-+.+ .....+..+++..+ .|.. .-+..+..+++.. .|++|+-... +.-|+.+++.+..
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a~----- 138 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMCL----- 138 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHHT-----
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHHC-----
Confidence 46888887644 35667777787776 3333 4455677777743 7898885544 3346778887753
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||+. .. ....+.+ .|-.+|+..+.+.++|...|..++.
T Consensus 139 G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 4676644 32 2344555 7888999999999999999999876
No 175
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=64.22 E-value=48 Score=35.46 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=66.1
Q ss_pred cEEEEEe----cCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeccC-----------CCCCHHH
Q 042954 42 LRVLLVE----ADDSTRQIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVEL-----------PSISGFA 104 (720)
Q Consensus 42 ~rVLIVD----Dd~~~r~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~M-----------P~~dGie 104 (720)
..+++|| +...+.+.++.+-+..+..|. .+.+.++|..+++. ..|.|++-+.- .+...++
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~ 194 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQIT 194 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcHH
Confidence 4566664 334455666666555566665 47888888877753 37888873210 0123455
Q ss_pred HHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++.++.+......+|||.--+-.+.+.+.+++.+||+....=
T Consensus 195 ~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 195 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 566654321113589998888888999999999999988654
No 176
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=64.21 E-value=39 Score=35.36 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=60.1
Q ss_pred HHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCC-C----CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHH
Q 042954 59 ALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELP-S----ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMV 132 (720)
Q Consensus 59 ~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP-~----~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~ 132 (720)
+.++..|..|.. +.+.++|..+.+. .+|.|+++-.-. + ...++++..+++.. ++|||+-.+-.+.+.+
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~---~iPviaaGGI~~~~dv 191 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSV---NIPVIAAGGIADGRGM 191 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESSCCSHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHc---CCCEEEECCCCCHHHH
Confidence 445556766655 7888888776653 378888864222 2 24678899988653 6899999998889999
Q ss_pred HHHHHcCCcEEEeC
Q 042954 133 LKCMLKGAADFLIK 146 (720)
Q Consensus 133 ~~Al~~GA~dYL~K 146 (720)
.+++..||+....=
T Consensus 192 ~~al~~GA~gV~vG 205 (326)
T 3bo9_A 192 AAAFALGAEAVQMG 205 (326)
T ss_dssp HHHHHHTCSEEEES
T ss_pred HHHHHhCCCEEEec
Confidence 99999999988653
No 177
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=63.94 E-value=9.7 Score=39.72 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=50.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~ 112 (720)
-++.+||-++.....|++.++...--.+...|+.+++..+......+||||+|-=-. ..+.-.+++.|.+.
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~ 185 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNA 185 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHh
Confidence 699999999999999999887643333447788888887754334699999996332 23445666665543
No 178
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=63.69 E-value=8.5 Score=39.80 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCCCCCeEEEEecc------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLH------DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~------~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
.+++++++|+.. .++|||+|+-+ .-...+.+|.++|+++.|.-.+..+|....+..+
T Consensus 84 ~~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 84 CFELIAQIRARN--PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHHHHC--TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 356888888764 57999999833 2345678889999999999888888765555444
No 179
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=63.31 E-value=2.2 Score=47.66 Aligned_cols=110 Identities=5% Similarity=-0.056 Sum_probs=57.4
Q ss_pred CCCE-EEEEecCC-----cEEEeccCcCCCcccccc--ccc--ccccCCccEEEEEecCHHHHHHHHHHHHh-----CCC
Q 042954 2 KMGE-VVVSSEGG-----MDIDLETEKDGSSEVVRT--RWE--SFLPRMVLRVLLVEADDSTRQIISALLRK-----CGY 66 (720)
Q Consensus 2 mgG~-I~v~S~~g-----f~i~lp~~~~~~~~~~~~--~~~--~~l~~m~~rVLIVDDd~~~r~~L~~lL~~-----~gy 66 (720)
|||+ |.|.|..+ |.|.||+......+.+.. ... ....-..+.|.+.++.......+..+|+. .++
T Consensus 123 ~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l~~~al~~p~v 202 (471)
T 1mu5_A 123 HQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYIITPYA 202 (471)
T ss_dssp HCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHHHHHHhHCCCe
Confidence 7899 99999865 677777654321111100 110 00111234444444433332334443332 367
Q ss_pred EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 67 RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 67 eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
.+....++.+++...+.....|+. .+..||.++|+++...++-..
T Consensus 203 ~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~~~~ 247 (471)
T 1mu5_A 203 EFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKILIN 247 (471)
T ss_dssp EEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHHHST
T ss_pred EEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHHHHH
Confidence 888777665554433221112333 577899999998887776543
No 180
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=62.84 E-value=84 Score=32.45 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=63.8
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
|++.|+.-. +.+..-.+..+.++.+.. ..+|.|++|+.=...+--.+...++... ....+++|-+...+...+..
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~~~~~~~~~~l~a~~-~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAPNNVQTVLTQLQAIA-PYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSSCCHHHHHHHHHHHT-TSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCccchHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHH
Confidence 566666532 233332333444555554 4599999999654444445555555433 23678999999888888999
Q ss_pred HHHcCCcEEEe-CCCCHHHHHHHHHH
Q 042954 135 CMLKGAADFLI-KPVRRNELRNLWQH 159 (720)
Q Consensus 135 Al~~GA~dYL~-KP~~~~eL~~~l~~ 159 (720)
++..|++..+. |--+.++++.+++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999987554 33567787766554
No 181
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=61.45 E-value=16 Score=35.32 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=34.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT 93 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl 93 (720)
|..+|+|||=-..+...+.+.|+..|++++.+.+.++. .. +|.||+
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 45589999977777788889999999999888886543 22 677776
No 182
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=61.34 E-value=32 Score=35.78 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=62.3
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCEEEE-ECCHHH-HHHHHHcCCCCc-eEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYRVAA-VPDGLA-AWETLKCRPHSI-DLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~-A~sg~e-Ale~L~~~~~~p-DLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
|++||.||---..-...+..+... .+++++. ++.-.+ +.+..+. ..+ .-+..|+ +.+-+.
T Consensus 1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~--~g~~~~~~~~~-----------~~ll~~--- 64 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ--YQLNATVYPND-----------DSLLAD--- 64 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH--TTCCCEEESSH-----------HHHHHC---
T ss_pred CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH--hCCCCeeeCCH-----------HHHhcC---
Confidence 568999998866555555555524 4788776 333333 3333333 122 1222221 222222
Q ss_pred CCCeEEEEec--cCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSL--HDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+++-+|+++. ....+.+..|+++|.+=|+.|| .+.++....++.+-+..
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g 117 (344)
T 3mz0_A 65 ENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVG 117 (344)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHC
Confidence 2233344433 3346778899999999999999 46778777777665543
No 183
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=60.80 E-value=55 Score=34.72 Aligned_cols=78 Identities=21% Similarity=0.157 Sum_probs=56.2
Q ss_pred HhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc---------CCC-------CCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 62 RKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE---------LPS-------ISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 62 ~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~---------MP~-------~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
+..|..|.. +.+.++|....+. .+|.|+++-. .+. ...+++++++++. .++|||+.-
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaaG 215 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAAG 215 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEES
T ss_pred HHCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEEC
Confidence 335665554 7888888766542 3899988531 111 2348899999875 368999888
Q ss_pred ccCCHHHHHHHHHcCCcEEEe
Q 042954 125 LHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 125 s~~d~e~~~~Al~~GA~dYL~ 145 (720)
+-.+.+.+.+++..||+.+..
T Consensus 216 GI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 216 GIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 887999999999999987764
No 184
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=60.64 E-value=1.1e+02 Score=31.17 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=63.4
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
|++.|+.-. +.+.......+.++.+.. ..+|.|++|+.=...+--++...++.... ...+++|-+...+...+..
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHH
Confidence 556665432 233333334444555554 45999999996544444455555554432 3578888988888888889
Q ss_pred HHHcCCcEEEe-CCCCHHHHHHHHHHH
Q 042954 135 CMLKGAADFLI-KPVRRNELRNLWQHV 160 (720)
Q Consensus 135 Al~~GA~dYL~-KP~~~~eL~~~l~~v 160 (720)
++..|++..+. |=-+.++++..++.+
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 99999987544 335677876665543
No 185
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=59.68 E-value=27 Score=39.97 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=68.9
Q ss_pred ccEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHh
Q 042954 41 VLRVLLV----EADDSTRQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVME 111 (720)
Q Consensus 41 ~~rVLIV----DDd~~~r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~ 111 (720)
..+|||+ |-+..=..++..+|+..||+|+.. -..++.++.+.. ..+|+|.+-..|.. +. --++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578888 667778888999999999999863 356777777776 45999999887753 22 2367778887
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHH---HcCCcEEEe
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCM---LKGAADFLI 145 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al---~~GA~dYL~ 145 (720)
.. .++||++--.....+....-+ -.||+.|..
T Consensus 176 ~g--~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 176 QG--FTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp TT--CCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred cC--CCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 55 578887655555554432111 128776654
No 186
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=59.21 E-value=58 Score=34.06 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCC-----CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHH
Q 042954 60 LLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELP-----SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVL 133 (720)
Q Consensus 60 lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP-----~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~ 133 (720)
.++..|+.|.. +.+.++|..+.+. .+|.|+++-.-. ....+++++++++.. ++|||+..+-.+.+.+.
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~---~iPViaaGGI~~~~~~~ 178 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAA 178 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESSCCSHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhc---CCCEEEECCCCCHHHHH
Confidence 34455776665 7788877665542 378888863211 134578999998753 68999998888899999
Q ss_pred HHHHcCCcEEEe
Q 042954 134 KCMLKGAADFLI 145 (720)
Q Consensus 134 ~Al~~GA~dYL~ 145 (720)
+++..||+....
T Consensus 179 ~al~~GAdgV~v 190 (332)
T 2z6i_A 179 AGFMLGAEAVQV 190 (332)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEe
Confidence 999999987754
No 187
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=58.60 E-value=26 Score=34.62 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=54.3
Q ss_pred HHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeccCCCC-------CHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 58 SALLRKCGYRVAA-V--PDGLAAWETLKCRPHSIDLVLTEVELPSI-------SGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 58 ~~lL~~~gyeV~~-A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~-------dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
.+.++..|..+.. + .+..+.++.+.......|.|+++-..|+. .+++.++++++.. +++||++.-+-.
T Consensus 106 ~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~GGI~ 183 (228)
T 1h1y_A 106 IQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGGLG 183 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESSCS
T ss_pred HHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEECCcC
Confidence 3344455665544 3 33345554443310037999998887753 3467778888764 477877666554
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
. +.+.+++..||+.++.=
T Consensus 184 ~-~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 184 P-STIDVAASAGANCIVAG 201 (228)
T ss_dssp T-TTHHHHHHHTCCEEEES
T ss_pred H-HHHHHHHHcCCCEEEEC
Confidence 4 77888888999988764
No 188
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=58.35 E-value=33 Score=35.65 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=60.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAV-P-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A-~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
||+||.||---..-...+..+.+..+++++.+ + +.+.+.++.+.. ...-+..|+ +.+-+. ++
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~~~~-----------~~ll~~---~~ 64 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL--GVEKAYKDP-----------HELIED---PN 64 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH--TCSEEESSH-----------HHHHHC---TT
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh--CCCceeCCH-----------HHHhcC---CC
Confidence 57899999976555444444444347887753 3 333333333321 122222221 222222 22
Q ss_pred CeEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+-+|+++.. ...+.+..|+++|..=|+.|| .+.++....+..+-+..
T Consensus 65 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g 115 (344)
T 3ezy_A 65 VDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKAD 115 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444333 335678889999999999999 66777777776665443
No 189
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=58.28 E-value=48 Score=34.14 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=61.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHH-HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLA-AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~e-Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
||+||.||---..-...+..+.+..+++++. ++...+ +.++.+. +.+-..| ++.+-+. ++
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----~~~~~~~-----------~~~~l~~---~~ 63 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----YGCEVRT-----------IDAIEAA---AD 63 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----TTCEECC-----------HHHHHHC---TT
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----hCCCcCC-----------HHHHhcC---CC
Confidence 6789999998655554444444445788875 443333 3333332 2221211 1222222 22
Q ss_pred CeEEEEec--cCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSL--HDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+-+|+++. ....+.+..|++.|.+=|+.|| .+.++....+..+-+..
T Consensus 64 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g 114 (331)
T 4hkt_A 64 IDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTK 114 (331)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 33444433 3346778899999999999999 56777777776655443
No 190
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=57.94 E-value=96 Score=34.63 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=68.1
Q ss_pred ccEEEEEe----cCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHcCCCCceEEEEeccCC-----------CCCH
Q 042954 41 VLRVLLVE----ADDSTRQIISALLRKCG-YRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELP-----------SISG 102 (720)
Q Consensus 41 ~~rVLIVD----Dd~~~r~~L~~lL~~~g-yeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP-----------~~dG 102 (720)
...+++|| +...+.+.++.+-+..+ ..|+ .+.+.+.|..+++. .+|.|++.+.-- +...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 45778887 33455566666666653 4444 37888888887764 378888743211 1223
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+.++..+.+......+|||.--+-.+...+.+|+.+||+..+.-
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 55555554332113589999999999999999999999988765
No 191
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=57.84 E-value=16 Score=37.54 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccC------CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHD------SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~------d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+++++.||+. .++|||+|+-+. ....+..|...|++++|.-.+..+++...+..+-+
T Consensus 80 ~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~ 142 (271)
T 1ujp_A 80 LELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQE 142 (271)
T ss_dssp HHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHH
Confidence 5778888876 479999985322 23456678899999999988877777666655433
No 192
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=57.19 E-value=49 Score=34.02 Aligned_cols=107 Identities=12% Similarity=0.108 Sum_probs=65.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+++|+-+.+. ..+.++++.. .+.+...-+..+..+++.. .|++|+--.-.+.-|+.+++.+.. .+|
T Consensus 241 ~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a~-----G~P 309 (406)
T 2gek_A 241 VEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMAA-----GTA 309 (406)
T ss_dssp CEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHHH-----TCE
T ss_pred eEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHHc-----CCC
Confidence 46666665554 4444444332 1233333344555566643 577776532123346677777754 457
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
||+ |.. ....+.+..|-.+|+..|.+.++|..+|..++..
T Consensus 310 vI~-~~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 310 VVA-SDL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EEE-CCC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred EEE-ecC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 764 322 4456777788899999999999999999988763
No 193
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=56.86 E-value=78 Score=34.00 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeccC-----------CCCCHHHHHHHHHhccCCC
Q 042954 51 DSTRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVEL-----------PSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 51 ~~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~M-----------P~~dGieLL~~Ir~~~~~p 116 (720)
..+.+.++.+-+.. +..|. .+.+.++|..+.+ ..+|.|++-..- .+...++.+..+++.....
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 44555555554555 56666 3778888876654 348988882110 0222456666666532223
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++|||...+-.+.+.+.+++..||+....
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999998989999999999999988775
No 194
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=56.67 E-value=9.1 Score=39.70 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=48.7
Q ss_pred ccEEEEEec-----CHHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHcCCCCceEEEEeccCCCCCHH---HHH
Q 042954 41 VLRVLLVEA-----DDSTRQIISALLRKCG-YRVAAVPDGL-----AAWETLKCRPHSIDLVLTEVELPSISGF---ALL 106 (720)
Q Consensus 41 ~~rVLIVDD-----d~~~r~~L~~lL~~~g-yeV~~A~sg~-----eAle~L~~~~~~pDLVLlDv~MP~~dGi---eLL 106 (720)
.+|||||.- -+.....|..+|+..| |+|..+.+.. +.+. ..-..+||||++..+...+.- .|.
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHHHHHHHH
Confidence 479999986 2567789999999888 9999987641 2221 111359999998865544322 223
Q ss_pred HHHHhccCCCCCeEEEEe
Q 042954 107 TLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLT 124 (720)
+.++ ....+|++=
T Consensus 81 ~yV~-----~Ggglv~~H 93 (281)
T 4e5v_A 81 EYVQ-----NGGGVVIYH 93 (281)
T ss_dssp HHHH-----TTCEEEEEG
T ss_pred HHHH-----cCCCEEEEe
Confidence 3333 245777774
No 195
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=56.17 E-value=1.2e+02 Score=32.08 Aligned_cols=103 Identities=10% Similarity=0.070 Sum_probs=65.9
Q ss_pred cEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCCC------------CCH
Q 042954 42 LRVLLVE----ADDSTRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELPS------------ISG 102 (720)
Q Consensus 42 ~rVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP~------------~dG 102 (720)
..++.++ +...+.+.++.+-+.. +..|. .+.+.++|..+++. .+|.|++-.. ++ ..-
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCCH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCccH
Confidence 4566665 3344556666655555 55554 48889999887764 3898877431 21 122
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEE-eCCC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFL-IKPV 148 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL-~KP~ 148 (720)
+.++..+.+.....++|||.-.+-.+...+.+|+.+||+... -++|
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 444555543221135899998899999999999999998764 4454
No 196
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.33 E-value=27 Score=30.52 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=24.3
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLK 82 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~ 82 (720)
+|+-|.+..-++.+++-++..||+|.-+++.++|+..++
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivr 118 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVR 118 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHH
Confidence 344455555566666666666677766777777766654
No 197
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=55.26 E-value=61 Score=31.90 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=49.3
Q ss_pred ce-EEEEeccCCC-CC--HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC------CCCHHHHHHHH
Q 042954 88 ID-LVLTEVELPS-IS--GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK------PVRRNELRNLW 157 (720)
Q Consensus 88 pD-LVLlDv~MP~-~d--GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K------P~~~~eL~~~l 157 (720)
++ ++++++.-.+ .. .+++++++++.. .+|||...+-.+.+.+.++++.||++.+.= |+++.+++..+
T Consensus 166 ~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 166 AGEILLTSMDRDGTKEGYDLRLTRMVAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL 242 (252)
T ss_dssp CCEEEEEETTTTTTCSCCCHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred CCEEEEecccCCCCcCCCCHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56 5556553221 12 389999998763 689999999999999999999999998753 56777666554
Q ss_pred H
Q 042954 158 Q 158 (720)
Q Consensus 158 ~ 158 (720)
.
T Consensus 243 ~ 243 (252)
T 1ka9_F 243 A 243 (252)
T ss_dssp H
T ss_pred H
Confidence 3
No 198
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=55.23 E-value=1.3e+02 Score=30.32 Aligned_cols=100 Identities=12% Similarity=0.031 Sum_probs=63.0
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
|++.|+... +.+...-+..+.++.+.. ..+|.|++|+.=...+--++...++... ....+++|-+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHH
Confidence 556665432 333333344555566654 4599999999654333334444444432 24578999999888888889
Q ss_pred HHHcCCcEEEe-CCCCHHHHHHHHHH
Q 042954 135 CMLKGAADFLI-KPVRRNELRNLWQH 159 (720)
Q Consensus 135 Al~~GA~dYL~-KP~~~~eL~~~l~~ 159 (720)
++..|+++.+. |--+.+++...++.
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HHhcCCceeeecCcCCHHHHHHHHHH
Confidence 99999987544 33567888655544
No 199
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=55.18 E-value=65 Score=33.66 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=63.4
Q ss_pred CCccEEEEEecCHHHHH-HHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 39 RMVLRVLLVEADDSTRQ-IISALLRKCGYRVAAV--PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~-~L~~lL~~~gyeV~~A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
..++||.||---..-.. .+..+.+..+++++.+ .+.+.+.+..+. ..+..+ .|+ +.+-+.
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~g~~~~-~~~-----------~~ll~~--- 87 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER--FGGEPV-EGY-----------PALLER--- 87 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH--HCSEEE-ESH-----------HHHHTC---
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH--cCCCCc-CCH-----------HHHhcC---
Confidence 33689999998766653 4444444447888753 344444444433 112222 332 223222
Q ss_pred CCCeEEEEec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSL--HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+++-+|+++. ....+.+..|+++|..=|+-||+ +.++....++.+-+..
T Consensus 88 ~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g 140 (350)
T 3rc1_A 88 DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERG 140 (350)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2333444433 33467788999999999999994 6778877777665543
No 200
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=54.58 E-value=25 Score=35.52 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=58.1
Q ss_pred HHHHHHhCC-CEEEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 57 ISALLRKCG-YRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 57 L~~lL~~~g-yeV~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
+...|...+ .-|+...+.++++++++.- ...+.+|=+.++ ..++++++++|++.. +++ +|-.-.--+.+.+..
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~e~I~~l~~~~--~~~-~iGaGTVlt~~~a~~ 101 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFR--SDAAVEAIRLLRQAQ--PEM-LIGAGTILNGEQALA 101 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHC--TTC-EEEEECCCSHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhC--CCC-EEeECCcCCHHHHHH
Confidence 334455555 4555677777777655421 123565555444 456899999999875 553 443434556899999
Q ss_pred HHHcCCcEEEeCCCCHHHHHHH
Q 042954 135 CMLKGAADFLIKPVRRNELRNL 156 (720)
Q Consensus 135 Al~~GA~dYL~KP~~~~eL~~~ 156 (720)
|+.+||+ |+.-|....++...
T Consensus 102 Ai~AGA~-fIvsP~~~~~vi~~ 122 (232)
T 4e38_A 102 AKEAGAT-FVVSPGFNPNTVRA 122 (232)
T ss_dssp HHHHTCS-EEECSSCCHHHHHH
T ss_pred HHHcCCC-EEEeCCCCHHHHHH
Confidence 9999997 55566444444443
No 201
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.10 E-value=22 Score=33.42 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=38.5
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRK--CGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~--~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
.....+||+||-|+.. .+..++.. .++.+..+.. ....+.+..-...||+||+|. |...+......+..
T Consensus 27 a~~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~--~~~~~~~~~~~l~~ 97 (206)
T 4dzz_A 27 SRSGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG--AGSLSVITSAAVMV 97 (206)
T ss_dssp HHTTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC--CSSSSHHHHHHHHH
T ss_pred HHCCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC--CCCCCHHHHHHHHH
Confidence 3445799999988642 23334432 3577777654 333333332224599999997 43334444444544
No 202
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=53.20 E-value=50 Score=27.67 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=53.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|+++|+|+-- -.+-..+...|...| ++|..+....+.++.+.. ..+.++..|+.- --++.+.+. ..
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~~----~~~~~~~~~------~~ 70 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAKD----EAGLAKALG------GF 70 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTTC----HHHHHHHTT------TC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCCC----HHHHHHHHc------CC
Confidence 5679999998 778888888887788 888876655555555543 336677666542 122222222 22
Q ss_pred eEEEE-eccCC-HHHHHHHHHcCCcEE
Q 042954 119 PVIMM-SLHDS-ISMVLKCMLKGAADF 143 (720)
Q Consensus 119 pVIvL-Ts~~d-~e~~~~Al~~GA~dY 143 (720)
-+|+. ++... ...+..|++.|+.-|
T Consensus 71 d~vi~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 71 DAVISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred CEEEECCCchhhHHHHHHHHHhCCCEE
Confidence 23433 33332 344555667776544
No 203
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=53.15 E-value=1.6e+02 Score=32.55 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=69.4
Q ss_pred cEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCC------------CCCH
Q 042954 42 LRVLLVE----ADDSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELP------------SISG 102 (720)
Q Consensus 42 ~rVLIVD----Dd~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP------------~~dG 102 (720)
..++++| ....+.+.++.+-+.. +..|.. +.+.++|..+++. ..|.|++-+. | +...
T Consensus 242 ~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 242 VDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp CSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCCH
T ss_pred cceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCccH
Confidence 5677776 4455666666666665 445544 7888888877763 3798887321 1 1234
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++++..+.+......+|||.--+-.+.+.+.+|+.+||+..+.=
T Consensus 318 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 56666666532224699999989989999999999999887764
No 204
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=53.12 E-value=35 Score=34.01 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=52.3
Q ss_pred HHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCCCCH-------HHHHHHHHhccCCCCCeEEEEeccC
Q 042954 58 SALLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPSISG-------FALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 58 ~~lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
.+.+++.|..+..+- +..+.++.+. ..+|+|++.-..|+..| ++-++++|+.. ++++|. +.+--
T Consensus 105 i~~i~~~G~k~gval~p~t~~e~l~~~l---~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~-VdGGI 178 (228)
T 3ovp_A 105 IKDIRENGMKVGLAIKPGTSVEYLAPWA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIE-VDGGV 178 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGTGGGG---GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEE-EESSC
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHh---ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEE-EeCCc
Confidence 334456666554432 2333333322 23789988777787765 45577777754 455554 55555
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
+.+.+.+++++||+-++.-
T Consensus 179 ~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 179 GPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp STTTHHHHHHHTCCEEEES
T ss_pred CHHHHHHHHHcCCCEEEEe
Confidence 6788999999999988764
No 205
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=53.06 E-value=49 Score=32.44 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=44.6
Q ss_pred ccEEEEEe------cCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 41 VLRVLLVE------ADDSTRQIISALLRKCGYRVAAV----PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 41 ~~rVLIVD------Dd~~~r~~L~~lL~~~gyeV~~A----~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
..+|++|+ |.......+...|+..|+++... .+.++..+.|.. .|.|++ |+.+-..+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 46899997 44567778889999999988877 367766666654 566664 5665556666655
Q ss_pred hc
Q 042954 111 EH 112 (720)
Q Consensus 111 ~~ 112 (720)
+.
T Consensus 99 ~~ 100 (206)
T 3l4e_A 99 RT 100 (206)
T ss_dssp HH
T ss_pred HC
Confidence 43
No 206
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=52.02 E-value=86 Score=31.84 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=64.6
Q ss_pred HHHHHHhCCCEE--EEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHH
Q 042954 57 ISALLRKCGYRV--AAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVL 133 (720)
Q Consensus 57 L~~lL~~~gyeV--~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~ 133 (720)
|++.|+...-.+ .... +..+.++.+.. ..+|.||+|+.=-..+.-.+...++... ...++++|-....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEhav~~~~k~~~~l~a~~-~~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEHAAYTFREINHLVSVAK-NAGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSSSCCCHHHHHHHHHHHH-HHTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccCCCCCHHHHHHHHHHHh-hcCCeEEEEeCCCCHHHHH
Confidence 556665543322 2222 33555566555 3499999999766555555555555432 1346777787777888899
Q ss_pred HHHHcCCcEEEe-CCCCHHHHHHHHHHH
Q 042954 134 KCMLKGAADFLI-KPVRRNELRNLWQHV 160 (720)
Q Consensus 134 ~Al~~GA~dYL~-KP~~~~eL~~~l~~v 160 (720)
.++..|++..++ |--+.+++..++..+
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 999999987654 335677777766654
No 207
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=52.00 E-value=89 Score=28.60 Aligned_cols=108 Identities=10% Similarity=0.089 Sum_probs=69.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHH--h--C--CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 41 VLRVLLVEADDSTRQIISALLR--K--C--GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~--~--~--gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
..+++||-+.+.. ..++.++. . . .+.+...-+.++..+++.. .|++|+-.. .+.-|+.+++.+..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama~--- 120 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMAS--- 120 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHHT---
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHHc---
Confidence 3577888754432 23333333 2 1 3455556677777787765 688887333 23346777777753
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.+|||+.. . ....+.+..|..+|+. +.+.++|..+|..++...
T Consensus 121 --G~PvI~~~-~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 121 --GKPVIAVN-E---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp --TCCEEEES-S---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred --CCcEEEeC-C---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 46887542 2 3455667778889999 999999999999988643
No 208
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=51.69 E-value=38 Score=32.82 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=48.5
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCC--------CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcE
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELP--------SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAAD 142 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP--------~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~d 142 (720)
+.+..++...... .+|.|++....| ...|+++++++++.. +++|||+.-+-. .+.+.+++..||+.
T Consensus 123 ~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~g 196 (227)
T 2tps_A 123 AHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGADG 196 (227)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCSE
T ss_pred cCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCCE
Confidence 5778886655442 389998733222 123788999998754 348998877666 77788888999988
Q ss_pred EEeC
Q 042954 143 FLIK 146 (720)
Q Consensus 143 YL~K 146 (720)
+..=
T Consensus 197 v~vg 200 (227)
T 2tps_A 197 VSMI 200 (227)
T ss_dssp EEES
T ss_pred EEEh
Confidence 8653
No 209
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=51.51 E-value=48 Score=32.70 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHcCCCCce-EEEEeccCCCCC---HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 72 PDGLAAWETLKCRPHSID-LVLTEVELPSIS---GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pD-LVLlDv~MP~~d---GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+..+..+.+.... +| |.+.|....+.. -+++++.|++. .++|||+..+..+.+.+.+++..||+..+.-
T Consensus 31 ~d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 31 GDPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp TCHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 34555555554322 44 455676543222 24667777764 4799999999999999999999999887764
No 210
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=51.27 E-value=44 Score=35.22 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=62.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAAVP--DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
++||.||---..-...+...|...+++++.+. +.+.|.+..+.. ...-+..| ++.+-+. +++
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--~~~~~~~~-----------~~~ll~~---~~v 89 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY--ADARRIAT-----------AEEILED---ENI 89 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS--SSCCEESC-----------HHHHHTC---TTC
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc--CCCcccCC-----------HHHHhcC---CCC
Confidence 48999999654333344555556789887643 333344443331 11112222 2233222 334
Q ss_pred eEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLHD--SISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~~--d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
=+|+++... -.+.+..|+++|..=|+-||+ +.++....+..+-+..
T Consensus 90 D~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 139 (361)
T 3u3x_A 90 GLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETG 139 (361)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTC
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 444444433 367788999999999999994 6778877777665433
No 211
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=51.05 E-value=7.3 Score=43.53 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHhc-----------CCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLKCRSAS-----------NTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~-----------gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
-.|+.-|+.+++.+++.+. ++++. +...+..||+|||||..-+
T Consensus 88 f~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~------~~~~v~~AaLlHDIGH~PF 141 (480)
T 3irh_A 88 FSHSLGVYEITRRICEIFQRNYSVERLGENGWNDD------ERLITLCAALLHDVGHGPY 141 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGG------GHHHHHHHHHHTTTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCccccccccCCCHH------HHHHHHHHHHHhccCCCCc
Confidence 4577788888888877661 12222 4567889999999999754
No 212
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=50.79 E-value=8.8 Score=36.95 Aligned_cols=42 Identities=5% Similarity=-0.046 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHh----cCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 225 EAESAYMQNMQGLSQLKCRSA----SNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l----~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
+-...|+.||+.++..+|..+ .++ ....+..+|++||++-+-
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~---------d~~~v~~~aLlHD~~E~~ 76 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRI---------DVEKALKMAIVHDLAEAI 76 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCC---------CHHHHHHHHHHTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHhchHHHH
Confidence 556999999999999999752 133 344667899999998653
No 213
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=50.58 E-value=77 Score=35.42 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..+.++.|.+ ..+|+|++|...+...+ ++++++|++.. +++|||+- .-...+.+..+.++||+..++
T Consensus 257 ~~era~aLve--aGvd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 257 AMTRIDALVK--ASVDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHh--hccceEEecccccchhhhhhHHHHHHHhC--CCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 3444444544 34999999998776655 47999999876 67888753 345678889999999987764
No 214
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=50.51 E-value=2e+02 Score=30.75 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=62.3
Q ss_pred ccEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCC------------C
Q 042954 41 VLRVLLVEA----DDSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSI------------S 101 (720)
Q Consensus 41 ~~rVLIVDD----d~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~------------d 101 (720)
...++.||- ...+.+.++.+-+.. +..|.. +.+.++|..+++. ..|.|++.+. |+. .
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 356888872 233344444433333 555554 7899999887763 3899988532 221 2
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
-++.+..+.+.. . |||.--+-.+...+.+|+.+||+....=
T Consensus 188 ~l~aI~~~~~~~---~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 188 MLTCIQDCSRAD---R-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHTTSS---S-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhC---C-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 234444443322 2 8998888888999999999999877653
No 215
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=50.46 E-value=50 Score=34.11 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=61.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC---CCEEEEEC--CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC---GYRVAAVP--DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~---gyeV~~A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
|++||.||---..-...+. .|... +++++.+. +.+.|.+..+... ..-+..| ++.+-+.
T Consensus 1 M~~rigiiG~G~ig~~~~~-~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~-- 64 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTA-VLQTLPRSEHQVVAVAARDLSRAKEFAQKHD--IPKAYGS-----------YEELAKD-- 64 (334)
T ss_dssp -CEEEEEECCSHHHHHHHH-HHTTSCTTTEEEEEEECSSHHHHHHHHHHHT--CSCEESS-----------HHHHHHC--
T ss_pred CccEEEEECchHHHHHHHH-HHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcC--
Confidence 5789999997666555444 44433 35766633 3334444433311 1112222 1223222
Q ss_pred CCCCeEEEEec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 115 CKNIPVIMMSL--HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 115 ~p~ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+++=+|+++. ....+.+.+|+++|.+=|+-||+ +.++....++.+-+..
T Consensus 65 -~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~ 117 (334)
T 3ohs_X 65 -PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRG 117 (334)
T ss_dssp -TTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred -CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 2333444433 33467788999999999999995 7788888777765543
No 216
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=50.38 E-value=50 Score=32.89 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCceEEE-Eecc----CCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 74 GLAAWETLKCRPHSIDLVL-TEVE----LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVL-lDv~----MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+..+.+... .++.|+ .++. +.+. .++++++|++. .++|||...+-.+.+.+.++++.||++.++=
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGY-DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCC-CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCC-CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34544444442 356555 4543 2222 38899999875 3789999999999999999999999998765
No 217
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=50.00 E-value=1.3e+02 Score=30.95 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=72.5
Q ss_pred ccEEEEEecCH-HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADD-STRQIISALLRKCGYRVAAVP--DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~-~~r~~L~~lL~~~gyeV~~A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..+++||-+.+ .....++.+.+..+-.+.... +.++..+++.. .|++|+-... +.-|+.+++.+.. .
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma~-----G 354 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMCL-----G 354 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHHT-----T
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHHC-----C
Confidence 46788887654 344677777777763333333 56667777743 6888876554 4456777777753 4
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+|||. |... ...+.+..| .+++..|.+.++|...|..++.
T Consensus 355 ~Pvi~-s~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 355 AIPIA-SAVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp CEEEE-ESST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CCeEE-cCCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 68775 4333 334555567 9999999999999999999887
No 218
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=49.98 E-value=14 Score=35.52 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCCCCeEEE--EeccCCHHH-HHHHHHcCCcEEEeC
Q 042954 72 PDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCKNIPVIM--MSLHDSISM-VLKCMLKGAADFLIK 146 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p~ipVIv--LTs~~d~e~-~~~Al~~GA~dYL~K 146 (720)
.+.+++++.++.-...+|+ +++.++- ..|.++++.|++.. ++.||++ ++. +-.+. +..+.+.||+.....
T Consensus 10 ~~~~~~~~~~~~~~~~v~~--iev~~~~~~~~g~~~i~~l~~~~--~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh 84 (207)
T 3ajx_A 10 LSTEAALELAGKVAEYVDI--IELGTPLIKAEGLSVITAVKKAH--PDKIVFADMKTM-DAGELEADIAFKAGADLVTVL 84 (207)
T ss_dssp SCHHHHHHHHHHHGGGCSE--EEECHHHHHHHCTHHHHHHHHHS--TTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCHHHHHHHHHHhhccCCE--EEECcHHHHhhCHHHHHHHHHhC--CCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEe
Confidence 3566666666532211233 5665542 35788999998864 5778885 443 21444 777889999988877
Q ss_pred CCCH-HHHHHHHHHH
Q 042954 147 PVRR-NELRNLWQHV 160 (720)
Q Consensus 147 P~~~-~eL~~~l~~v 160 (720)
+... ..+..+++.+
T Consensus 85 ~~~~~~~~~~~~~~~ 99 (207)
T 3ajx_A 85 GSADDSTIAGAVKAA 99 (207)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHH
Confidence 7544 4454444443
No 219
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=49.93 E-value=58 Score=32.21 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=66.0
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccC----C-CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 56 IISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVEL----P-SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~M----P-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
.+-..|+..||.+.. +..|...+..|.. .+||.|=+|..+ . +.....+++.|......-++. |+..+-.+
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~-viaeGVEt 219 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE-VVAEGVEN 219 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCE-EEECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCe-EEEEeCCC
Confidence 344556777988776 6777788888877 459999999632 2 222345555554432213444 45778888
Q ss_pred HHHHHHHHHcCCc---EE-EeCCCCHHHHHHHHHH
Q 042954 129 ISMVLKCMLKGAA---DF-LIKPVRRNELRNLWQH 159 (720)
Q Consensus 129 ~e~~~~Al~~GA~---dY-L~KP~~~~eL~~~l~~ 159 (720)
.+....+.+.|++ +| +.||...+++...+..
T Consensus 220 ~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 220 AEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 8888888899864 33 5689999999877665
No 220
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=49.78 E-value=1.1e+02 Score=31.76 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCCCCCeEE--EEeccCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHHHHHHHhhc
Q 042954 102 GFALLTLVMEHDVCKNIPVI--MMSLHDSISMVLKCMLKGAADFLI-----KPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVI--vLTs~~d~e~~~~Al~~GA~dYL~-----KP~~~~eL~~~l~~vlr~~ 164 (720)
.++++++|++.. .+||| ...+-.+.+.+.+++..||+.+++ |.-++......+..++..+
T Consensus 195 ~~~ll~~i~~~~---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~ 261 (297)
T 4adt_A 195 PIDLILLTRKLK---RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNF 261 (297)
T ss_dssp CHHHHHHHHHHT---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhh
Confidence 367888887763 46776 455666899999999999999986 4445655555555555543
No 221
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=49.63 E-value=1.1e+02 Score=30.15 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCCce-EEEEeccCCC-CC--HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC---
Q 042954 74 GLAAWETLKCRPHSID-LVLTEVELPS-IS--GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK--- 146 (720)
Q Consensus 74 g~eAle~L~~~~~~pD-LVLlDv~MP~-~d--GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K--- 146 (720)
..+.++.+.. ..++ |+++++.-.+ .. .++++++|++. .++|||...+-.+.+.+.++++.||+.++.=
T Consensus 153 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal 227 (253)
T 1thf_D 153 LRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHH
Confidence 4454444444 2367 4556653211 12 38899999875 3789999999998999999999999988754
Q ss_pred ---CCCHHHHHHHH
Q 042954 147 ---PVRRNELRNLW 157 (720)
Q Consensus 147 ---P~~~~eL~~~l 157 (720)
|+++.+++..+
T Consensus 228 ~~~~~~~~~~~~~l 241 (253)
T 1thf_D 228 HFREIDVRELKEYL 241 (253)
T ss_dssp HTTCSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 45665555544
No 222
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=49.08 E-value=8 Score=43.43 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccCCc
Q 042954 226 AESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGASD 278 (720)
Q Consensus 226 ~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~iPD 278 (720)
++-.|.++|..++..+-.++ .+... ..+...|..||+|||||.-.=++
T Consensus 331 ~d~~ha~~V~~~a~~Lf~ql-~~~~~----~~~~~lL~~Aa~LhdiG~~i~~~ 378 (508)
T 3hi0_A 331 RSPEHARELADWSGRTFPVF-GIDET----EEESRYRQAACLLADISWRAHPD 378 (508)
T ss_dssp SCHHHHHHHHHHHHHHGGGG-TCCCC----HHHHHHHHHHHHHTTTTTTSCGG
T ss_pred cCHHHHHHHHHHHHHHHHhh-ccCCC----hHHHHHHHHHHHHHHHhHHhCCC
Confidence 45789999999999887666 23211 23668899999999999975443
No 223
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.89 E-value=98 Score=27.53 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=55.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
....|+++|.++...+.++ ..|+.+.... +-.+.|+.+.- ...|+||+-+.-. ..-..++..++... +.+
T Consensus 29 ~g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~~~~-~~n~~~~~~a~~~~--~~~ 99 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTIPNG-YEAGEIVASARAKN--PDI 99 (140)
T ss_dssp TTCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECCSCH-HHHHHHHHHHHHHC--SSS
T ss_pred CCCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEECCCh-HHHHHHHHHHHHHC--CCC
Confidence 3467888888887655443 3577665422 22334443322 3478888765321 12334556677665 677
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+||+.... .+......+.||+..+.
T Consensus 100 ~iiar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 100 EIIARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEEEESS--HHHHHHHHHTTCSEEEE
T ss_pred eEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 87776653 35555566789886553
No 224
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=48.61 E-value=1.4e+02 Score=30.21 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHH
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNEL 153 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL 153 (720)
..+...++.. .|++|+.- |.-+++.+.. .+|||+.-..... .+.+..| .+|+..+ +.++|
T Consensus 273 ~~~~~~~~~~----ad~~v~~s------g~~~lEA~a~-----G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~l 332 (375)
T 3beo_A 273 VIDFHNVAAR----SYLMLTDS------GGVQEEAPSL-----GVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETI 332 (375)
T ss_dssp HHHHHHHHHT----CSEEEECC------HHHHHHHHHH-----TCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHH
T ss_pred HHHHHHHHHh----CcEEEECC------CChHHHHHhc-----CCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHH
Confidence 3455555543 67777643 4446666643 4688865221222 3346778 8999877 99999
Q ss_pred HHHHHHHHhh
Q 042954 154 RNLWQHVWRR 163 (720)
Q Consensus 154 ~~~l~~vlr~ 163 (720)
...|..++..
T Consensus 333 a~~i~~ll~~ 342 (375)
T 3beo_A 333 FSLADELLSD 342 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988763
No 225
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=48.37 E-value=91 Score=32.46 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=53.8
Q ss_pred hCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeccCC--CCCH----------HHHHH----HHHhccCCCCCeEEEEe-
Q 042954 63 KCG-YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP--SISG----------FALLT----LVMEHDVCKNIPVIMMS- 124 (720)
Q Consensus 63 ~~g-yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP--~~dG----------ieLL~----~Ir~~~~~p~ipVIvLT- 124 (720)
+.| +.+..+.+.++|.+..+. .+|+|++.+-+- +.-| .+.++ .+++.. |++.|+.-.
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vn--pdvivLc~gG 235 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIR--DDIIILSHGG 235 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHC--SCCEEEEEST
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhC--CCcEEEecCC
Confidence 345 466679999999988764 389999997643 2222 33333 345544 676555444
Q ss_pred ccCCHHHHHHHHHc--CCcEEEeCC
Q 042954 125 LHDSISMVLKCMLK--GAADFLIKP 147 (720)
Q Consensus 125 s~~d~e~~~~Al~~--GA~dYL~KP 147 (720)
+-...+++..+++. |+++|+.-.
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCCCHHHHHHHHhcCCCccEEEeeh
Confidence 44678999999999 999999764
No 226
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=48.19 E-value=15 Score=37.86 Aligned_cols=42 Identities=7% Similarity=-0.135 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHH------------HHHHhcCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 227 ESAYMQNMQGLSQL------------KCRSASNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~------------lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
.-.|..-|+..+.. +++.+ |++++ ...+.+...+.||||||.
T Consensus 26 L~~HllDvAava~~L~~~~~~~~r~~la~~~-g~~~~-----~~~~~~~~~~~lHDiGK~ 79 (265)
T 3sk9_A 26 LLAHMLDTAAVALAVLRMEPPRTRALYAEDW-GLPEE-----GALAWAAALVGLHDLGKA 79 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH-TSCHH-----HHHHHHHHHHTTTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHh-CCCHH-----HHHHHHHHHHHHhhcccc
Confidence 45677777777776 45556 66543 123456667779999997
No 227
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=48.12 E-value=43 Score=34.63 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=61.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPD--GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~s--g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
+++||.||---..-...+..+.+..+++++.+.+ .+.+.+..+... ..-+.. + ++.+-... ..+
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~-------~----~~~ll~~~-~~D 69 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA--IPVAYG-------S----YEELCKDE-TID 69 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT--CCCCBS-------S----HHHHHHCT-TCS
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC--CCceeC-------C----HHHHhcCC-CCC
Confidence 4579999987655555554444445788876433 333433333311 110111 1 12222221 133
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+-+|........+.+..|+++|..=|+.|| .+.++....++.+-+..
T Consensus 70 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g 118 (330)
T 3e9m_A 70 IIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQG 118 (330)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 333333333346778899999999999999 46677777776665443
No 228
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=47.63 E-value=34 Score=34.43 Aligned_cols=43 Identities=21% Similarity=0.061 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.+++++++++.. ++||++-.+-.+.+.+.+++..||+.+++-.
T Consensus 189 ~~~~i~~v~~~~---~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGS 231 (262)
T 1rd5_A 189 VESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIGS 231 (262)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHhhc---CCeEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence 457888888763 6899998888889999999999999998653
No 229
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=47.47 E-value=26 Score=33.60 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=45.7
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++.++...++. .+|+|-.... ..-|++++++++... +++||+...+-. .+.+.+++..||+.+..
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~--~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPF--PNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTC--TTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhC--CCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 56777666542 3777765421 123789999998754 578988777665 56888999999988765
No 230
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=47.31 E-value=87 Score=30.32 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCCceEEEE-eccCCCC---CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe----
Q 042954 74 GLAAWETLKCRPHSIDLVLT-EVELPSI---SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI---- 145 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLl-Dv~MP~~---dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~---- 145 (720)
..+.++.+.. ..+|.|++ .+.-.+. -.+++++++++. .++|||+..+-...+.+.++++.||+.++.
T Consensus 156 ~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal 230 (253)
T 1h5y_A 156 AVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLF 230 (253)
T ss_dssp HHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHH
Confidence 4444444443 23676654 4432111 246888888875 378999998888888999999999998875
Q ss_pred --CCCCHHHHHHHHH
Q 042954 146 --KPVRRNELRNLWQ 158 (720)
Q Consensus 146 --KP~~~~eL~~~l~ 158 (720)
.+.+..++...++
T Consensus 231 ~~~~~~~~~~~~~l~ 245 (253)
T 1h5y_A 231 HFRVLSIAQVKRYLK 245 (253)
T ss_dssp HTTSSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 3455555555443
No 231
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=47.21 E-value=67 Score=33.67 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHh-CCCEEEEECC--HHHHHHHHHcCCCCce-EEEEeccCCCCCHHHHHHHHHhccC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRK-CGYRVAAVPD--GLAAWETLKCRPHSID-LVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~A~s--g~eAle~L~~~~~~pD-LVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
.|++||.||---..-...+..+... .+++++.+.+ .+.+.+..+. ..+. -+..| ++.+-...
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~--~g~~~~~~~~-----------~~~ll~~~- 86 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK--YAIEAKDYND-----------YHDLINDK- 86 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH--HTCCCEEESS-----------HHHHHHCT-
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH--hCCCCeeeCC-----------HHHHhcCC-
Confidence 3468999999877666556655534 4788876333 2233333222 1111 12222 12222221
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
..++-+|........+.+..|+++|..=|+.||+ +.++....++.+-+..
T Consensus 87 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g 138 (357)
T 3ec7_A 87 DVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNG 138 (357)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhC
Confidence 1343333223333467788999999999999994 6778877777665543
No 232
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=46.95 E-value=38 Score=33.77 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=47.3
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeccCCCC---CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 73 DGLAAWETLKCRPHSID-LVLTEVELPSI---SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 73 sg~eAle~L~~~~~~pD-LVLlDv~MP~~---dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
+..+..+.+... ..| |.|+|+...+. .-+++++.|++. ..+|||+..+..+.+.+.+++..||+..+.=.
T Consensus 31 ~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 444544444432 244 45567643321 127888888865 37999998888888889999999999888754
No 233
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=46.94 E-value=44 Score=37.27 Aligned_cols=66 Identities=6% Similarity=0.003 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.+..+++. .+|+|.+|...+... -++++++|++.. +++|||+ ..-...+.+..++++||+..++
T Consensus 233 ~~~a~~l~~a---G~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVEA---GVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHHT---TCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhc---cCceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 3444444442 499999999877554 358999999876 6788887 3345678888999999987775
No 234
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=46.92 E-value=12 Score=38.20 Aligned_cols=43 Identities=5% Similarity=-0.161 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHH--------HHHh----cCCCccchhhhHHHHHHhhhhcCCCcccc
Q 042954 227 ESAYMQNMQGLSQLK--------CRSA----SNTCSTDMERQNECAKLETESLMPESKTG 274 (720)
Q Consensus 227 ~g~Hv~Rva~~s~~l--------A~~l----~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI 274 (720)
...|+..+..+...+ .+.+ .+++.+ +..+.++.|+.+||+||.
T Consensus 17 L~EHt~dvL~~~e~Lk~~y~~sI~r~L~~~~i~Ld~e-----~~~~ll~~a~llHDiGKa 71 (244)
T 3m5f_A 17 LIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIE-----KVDEFMKILIKLHDIGKA 71 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCHH-----HHHHHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCHH-----HHHHHHHHHHHHcccccC
Confidence 356777777766632 3333 122222 234667899999999997
No 235
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=46.84 E-value=73 Score=33.32 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=67.1
Q ss_pred cEEEEEecC---HHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 42 LRVLLVEAD---DSTRQIISALLRKCGY--RVAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 42 ~rVLIVDDd---~~~r~~L~~lL~~~gy--eV~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
++++||-+. ......++.+++..+. .|.. .-+..+..+++.. .|++|+-... +.-|+-+++.+..
T Consensus 277 ~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~Eama~--- 348 (438)
T 3c48_A 277 LRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSFN-ESFGLVAMEAQAS--- 348 (438)
T ss_dssp EEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCSC-CSSCHHHHHHHHT---
T ss_pred eEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECccc-cCCchHHHHHHHc---
Confidence 577777661 2334556666665542 2333 4445677777754 6777764432 3346777777743
Q ss_pred CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 115 CKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||+. .... ..+.+..|..+|+..|.+.++|..+|..++.
T Consensus 349 --G~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 --GTPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp --TCCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred --CCCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 4687754 3333 3345667888999999999999999998876
No 236
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=46.83 E-value=58 Score=32.87 Aligned_cols=85 Identities=12% Similarity=0.012 Sum_probs=49.4
Q ss_pred cEEEEEe-cCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVE-ADDS---TRQIISALLRKCGYRVAA---V----PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVD-Dd~~---~r~~L~~lL~~~gyeV~~---A----~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.||.||. |+.. ..+.+++.|+..|.+++. + .+....+..+.. ..+|+||+-. .+...+.+++.++
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~dav~~~~--~~~~a~~~~~~~~ 211 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA--ANPDAILVGA--SGTAAALPQTTLR 211 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH--HCCSEEEEEC--CHHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh--cCCCEEEEec--CcchHHHHHHHHH
Confidence 3555554 3332 345566777777776542 1 244455555554 2478887743 2345677788887
Q ss_pred hccCCCCCeEEEEeccCCHHHH
Q 042954 111 EHDVCKNIPVIMMSLHDSISMV 132 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~~ 132 (720)
+.. -.+|+|...+..+.+..
T Consensus 212 ~~g--~~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 212 ERG--YNGLIYQTHGAASMDFI 231 (362)
T ss_dssp HTT--CCSEEEECGGGCSHHHH
T ss_pred HcC--CCccEEeccCcCcHHHH
Confidence 765 45777666666655443
No 237
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=46.07 E-value=96 Score=30.24 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHcCCCCceEE---EEeccCCC-----CCHHHHHHHHHhccCCCCCeEEE
Q 042954 53 TRQIISALLRKC-GYRVAA-VPDGLAAWETLKCRPHSIDLV---LTEVELPS-----ISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 53 ~r~~L~~lL~~~-gyeV~~-A~sg~eAle~L~~~~~~pDLV---LlDv~MP~-----~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
..+.++.+-+.. +..|.. +.+.+++...+.. ..|+| +..+ .++ ...++++++++.. ++|||+
T Consensus 120 ~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~-~~~~~~~~~~~~~~i~~~~~~----~ipvia 191 (234)
T 1yxy_A 120 IASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGY-TPYSRQEAGPDVALIEALCKA----GIAVIA 191 (234)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTS-STTSCCSSSCCHHHHHHHHHT----TCCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeecccc-CCCCcCCCCCCHHHHHHHHhC----CCCEEE
Confidence 344444444443 555553 6788888776653 37888 3332 121 1246888888763 589999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeC
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+-.+.+.+.++++.||+.++.=
T Consensus 192 ~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 192 EGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp ESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEc
Confidence 888888999999999999988764
No 238
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=46.02 E-value=1.1e+02 Score=31.08 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHcCCCCceEEEE---------eccC--C-------CCCH------
Q 042954 52 STRQIISALLRKCGYRVAA-----VPDGLAAWETLKCRPHSIDLVLT---------EVEL--P-------SISG------ 102 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~-----A~sg~eAle~L~~~~~~pDLVLl---------Dv~M--P-------~~dG------ 102 (720)
.+.+.++++-+..++.|.. +.+..+..+.+.+ ..+|.|++ +..- | +..|
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~--~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH--TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH--cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 3455555554444554442 2355665555555 34888777 3321 1 1222
Q ss_pred -HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe------CCCCHHHHHHHHHHHHh
Q 042954 103 -FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI------KPVRRNELRNLWQHVWR 162 (720)
Q Consensus 103 -ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~------KP~~~~eL~~~l~~vlr 162 (720)
+++++++++. -++|||..-+-.+.+.+.+++..||+.... .|.-..++..-+...+.
T Consensus 229 ~~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~ 292 (311)
T 1ep3_A 229 ALKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD 292 (311)
T ss_dssp HHHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence 4788888765 378999888888999999999999877643 35444555555554443
No 239
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=46.00 E-value=34 Score=36.40 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=59.4
Q ss_pred CccEEEEEecCHHHHHHHHHHH-HhCCCEEEEECC--HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALL-RKCGYRVAAVPD--GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL-~~~gyeV~~A~s--g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
|++||.||----.+.......| ...+++++.+.+ .+.+.+..+. +.+-.. .+--+++. ... .
T Consensus 1 ~~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----~g~~~~------~~~~ell~---~~~--v 65 (387)
T 3moi_A 1 MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----YGIPVF------ATLAEMMQ---HVQ--M 65 (387)
T ss_dssp CCEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----HTCCEE------SSHHHHHH---HSC--C
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----cCCCeE------CCHHHHHc---CCC--C
Confidence 4578889888744444333444 444788776433 3333333322 222111 11122322 211 3
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
++.+|........+.+..|+++|.+=|+.||+ +.++...++..+-+..
T Consensus 66 D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g 115 (387)
T 3moi_A 66 DAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAG 115 (387)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhC
Confidence 33333222233467888999999999999994 5777777776654443
No 240
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=45.57 E-value=9.6 Score=43.07 Aligned_cols=51 Identities=8% Similarity=-0.029 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccc-hhhhHHHHHHhhhhcCCCcccccCCcc
Q 042954 228 SAYMQNMQGLSQLKCRSASNTCSTD-MERQNECAKLETESLMPESKTGGASDE 279 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~~~~-~~~~~~~~~l~~Aa~LHDIGKI~iPD~ 279 (720)
-.|+.-|+.+++.+++.+ +..... .....+...+..||+|||||..-+...
T Consensus 67 f~HSLgV~~la~~i~~~l-~~~~~~~~~~~~d~~~v~~AaLlHDiGH~PFsH~ 118 (528)
T 3u1n_A 67 FEHSLGVGYLAGCLVHAL-GEKQPELQISERDVLCVQIAGLCHDLGHGPFSHM 118 (528)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCGGGCCCHHHHHHHHHHHHHTTTTCBTTBHH
T ss_pred HHHHHHHHHHHHHHHHHH-HhhCcccCCCHHHHHHHHHHHHHhccCCCCccch
Confidence 458888888888888776 210000 001224567889999999999876543
No 241
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=45.52 E-value=1.1e+02 Score=27.82 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=46.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|.-||-++...+..+..+...++ .+ ....+..+.+..+......||+|++|...-..+..++++.+.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~ 139 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML 139 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHH
Confidence 5899999999999999988877654 23 336677665543321124599999985432334556666663
No 242
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=45.32 E-value=58 Score=32.11 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=51.7
Q ss_pred HHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCce-EEEEeccCCCCC---------HHHHHHHHHhccCCCCCeEEEE
Q 042954 57 ISALLRKCGYRVAA-VP--DGLAAWETLKCRPHSID-LVLTEVELPSIS---------GFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 57 L~~lL~~~gyeV~~-A~--sg~eAle~L~~~~~~pD-LVLlDv~MP~~d---------GieLL~~Ir~~~~~p~ipVIvL 123 (720)
+.+.+++.|..+.. +. +..+.++.+... .| +|.+ +..++.. ++++++++++.. ++||++-
T Consensus 125 ~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~---~~pi~~~ 197 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRIC---RNKVAVG 197 (248)
T ss_dssp HHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHC---SSCEEEE
T ss_pred HHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhc---CCCEEEE
Confidence 34444555655443 22 446666555432 34 5544 2225432 356788887753 6899988
Q ss_pred eccCCHHHHHHHHHcCCcEEEeC
Q 042954 124 SLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 124 Ts~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+-...+.+.+++..||+.+++-
T Consensus 198 GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 198 FGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred eecCCHHHHHHHHHcCCCEEEEc
Confidence 88888799999999999999875
No 243
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=44.92 E-value=30 Score=34.82 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCCHH---HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDSIS---MVLKCMLKGAADFLIKPVRRNELRNLWQHVW 161 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d~e---~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vl 161 (720)
++++++.||+. .++||++|+- .+.. .+..|.+.||++++.-....+++...+..+.
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~ 140 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAK 140 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHH
Confidence 56778888875 4689998862 2221 1234889999999987666666665555543
No 244
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=44.60 E-value=1.2e+02 Score=29.43 Aligned_cols=91 Identities=9% Similarity=-0.079 Sum_probs=62.6
Q ss_pred CCCEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCC-CC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCC
Q 042954 64 CGYRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPS-IS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGA 140 (720)
Q Consensus 64 ~gyeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA 140 (720)
.|..+ ..+.+..|+.+.++. ..|.|-+ .|. .- |++.++.++... +++|++.+-+-. .+.+.+.+.+|+
T Consensus 103 ~g~~~i~G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~--~~ipvvaiGGI~-~~n~~~~l~aGa 173 (207)
T 2yw3_A 103 RGVPYLPGVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVF--PEVRFLPTGGIK-EEHLPHYAALPN 173 (207)
T ss_dssp HTCCEEEEECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHC--TTCEEEEBSSCC-GGGHHHHHTCSS
T ss_pred hCCCEEecCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhC--CCCcEEEeCCCC-HHHHHHHHhCCC
Confidence 34433 348889999887763 3788877 453 33 889999998865 689998665554 688889999998
Q ss_pred cEEEeCC----CCHHHHHHHHHHHHhh
Q 042954 141 ADFLIKP----VRRNELRNLWQHVWRR 163 (720)
Q Consensus 141 ~dYL~KP----~~~~eL~~~l~~vlr~ 163 (720)
+.+..=- -+..++....+.+++.
T Consensus 174 ~~vavgSai~~~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 174 LLAVGGSWLLQGNLEAVRAKVRAAKAL 200 (207)
T ss_dssp BSCEEESGGGSSCHHHHHHHHHHHHHH
T ss_pred cEEEEehhhhCCCHHHHHHHHHHHHHH
Confidence 6654321 4556677776666554
No 245
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=44.49 E-value=58 Score=34.20 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=60.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEEEE-CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVAAV-PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A-~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
++||.||---..-...+. .|... +++++.+ +.-.+..+..+. +.+ +..+. ++.+-.. +++
T Consensus 5 ~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~-------~~~~~---~~~ll~~---~~~ 66 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGL-------KIYES---YEAVLAD---EKV 66 (359)
T ss_dssp CEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTC-------CBCSC---HHHHHHC---TTC
T ss_pred cCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCC-------ceeCC---HHHHhcC---CCC
Confidence 579999988665554444 45544 7888764 333333343332 222 11111 1222222 233
Q ss_pred eEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
-+|+++.. ...+.+..|+++|..=|+.|| .+.++....+..+-+..
T Consensus 67 D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (359)
T 3e18_A 67 DAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVN 116 (359)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhC
Confidence 34444333 346778899999999999999 46677777777665443
No 246
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=44.43 E-value=62 Score=33.49 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=65.4
Q ss_pred cCCccEEEEEecCHHHHHHHHHHHHhC-CCEEEEEC--CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 38 PRMVLRVLLVEADDSTRQIISALLRKC-GYRVAAVP--DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 38 ~~m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
...|+||-||--=..-+..+...|+.. +++|+.+. +.+.|-+..+. ..+.-+..|+ +.+-+.
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~g~~~~y~d~-----------~ell~~-- 84 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR--FSVPHAFGSY-----------EEMLAS-- 84 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH--HTCSEEESSH-----------HHHHHC--
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH--cCCCeeeCCH-----------HHHhcC--
Confidence 345789999998766555555555554 78887643 33444444433 1122233332 233222
Q ss_pred CCCCeEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 115 CKNIPVIMMSLHD--SISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 115 ~p~ipVIvLTs~~--d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+++=+|+++... -.+.+.+|+++|.+=|+-||+ +.++....++.+-+..
T Consensus 85 -~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 137 (350)
T 4had_A 85 -DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK 137 (350)
T ss_dssp -SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHT
T ss_pred -CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcC
Confidence 234444444433 367889999999999999995 5667777666654443
No 247
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=44.37 E-value=30 Score=35.82 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=62.8
Q ss_pred ccEEEEEec-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceE-EEEeccCCCCCHHHHH---HHHHhccCC
Q 042954 41 VLRVLLVEA-DDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDL-VLTEVELPSISGFALL---TLVMEHDVC 115 (720)
Q Consensus 41 ~~rVLIVDD-d~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDL-VLlDv~MP~~dGieLL---~~Ir~~~~~ 115 (720)
|+||.||-- -..-...+. .|...+.+++.+.+.......+... . +.+ +..|+ -+++ +.+++..
T Consensus 3 mirvgiIG~gG~i~~~h~~-~l~~~~~~lvav~d~~~~~~~~~~~-~-~~~~~~~~~-------~~ll~~~~~l~~~~-- 70 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLK-AIKEVGGVLVASLDPATNVGLVDSF-F-PEAEFFTEP-------EAFEAYLEDLRDRG-- 70 (312)
T ss_dssp CCEEEEECTTSSSHHHHHH-HHHHTTCEEEEEECSSCCCGGGGGT-C-TTCEEESCH-------HHHHHHHHHHHHTT--
T ss_pred ceEEEEECCChHHHHHHHH-HHHhCCCEEEEEEcCCHHHHHHHhh-C-CCCceeCCH-------HHHHHHhhhhcccC--
Confidence 578999987 333333333 3444578877755443322222221 1 111 22222 2333 3333222
Q ss_pred CCCeEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhcc
Q 042954 116 KNIPVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 116 p~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~~ 165 (720)
+++=+|+++.. .-.+.+.+|+++|.+=|+-|| .+.++....+..+-+...
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~ 124 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGR 124 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCC
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 34444545433 346788999999999999999 567888887777655443
No 248
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=44.31 E-value=21 Score=32.08 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=45.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc--CCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC--RPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~--~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
|++||.+|-| +.+..++ +-.|+++..+.+.+++.+.+++ .. ++.|||+.-.+-..-. +.++++++ ..
T Consensus 1 m~mKiaVIGD-~Dtv~GF----rLaGie~~~v~~~ee~~~~~~~l~~~-digIIlIte~ia~~i~-~~i~~~~~----~~ 69 (115)
T 3aon_B 1 MTYKIGVVGD-KDSVSPF----RLFGFDVQHGTTKTEIRKTIDEMAKN-EYGVIYITEQCANLVP-ETIERYKG----QL 69 (115)
T ss_dssp CEEEEEEESC-HHHHGGG----GGGTCEEECCCSHHHHHHHHHHHHHT-TEEEEEEEHHHHTTCH-HHHHHHHT----SS
T ss_pred CceEEEEEEC-HHHHHHH----HHcCCeEEEeCCHHHHHHHHHHHHhc-CceEEEEeHHHHHHhH-HHHHHHhC----CC
Confidence 5679999999 5444333 3458888888888877655542 12 6999999865544333 35555653 23
Q ss_pred CeEEEE
Q 042954 118 IPVIMM 123 (720)
Q Consensus 118 ipVIvL 123 (720)
.|+|+.
T Consensus 70 ~P~Ive 75 (115)
T 3aon_B 70 TPAIIL 75 (115)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 566655
No 249
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=43.86 E-value=74 Score=32.65 Aligned_cols=107 Identities=15% Similarity=0.220 Sum_probs=55.8
Q ss_pred CccEEEEEecCHHHHH-HHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQ-IISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~-~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
|++||.||---..-.. .+..+++..+++++.++.-.+..+.+... .....+..| -.++ | . +++
T Consensus 1 m~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~-~g~~~~~~~-------~~~~---l-~----~~~ 64 (323)
T 1xea_A 1 MSLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR-YRVSATCTD-------YRDV---L-Q----YGV 64 (323)
T ss_dssp -CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH-TTCCCCCSS-------TTGG---G-G----GCC
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH-cCCCccccC-------HHHH---h-h----cCC
Confidence 5679999987554443 34444333467777544333333333221 112111111 1122 2 1 123
Q ss_pred eEEEEec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHh
Q 042954 119 PVIMMSL--HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWR 162 (720)
Q Consensus 119 pVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr 162 (720)
-+|+++. ..-.+.+..|+++|..=|+.||+ +.++....++.+-+
T Consensus 65 D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 65 DAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred CEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 3444433 33356777899999988999995 56777666665544
No 250
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=43.85 E-value=1e+02 Score=31.56 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
|+||.||---..-...+..+....+++++. +..-.+..+.+... ....-+..|+ -++ + . +++-
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~~~~-------~~~---l-~----~~~D 64 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASR-YQNIQLFDQL-------EVF---F-K----SSFD 64 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGG-SSSCEEESCH-------HHH---H-T----SSCS
T ss_pred CeEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH-cCCCeEeCCH-------HHH---h-C----CCCC
Confidence 468888887655444444444444687764 44333333333321 1111122221 122 2 1 2233
Q ss_pred EEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhh
Q 042954 120 VIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~ 163 (720)
+|+++.. ...+.+..|+++|.+=|+.||+ +.++....+..+-+.
T Consensus 65 ~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 112 (325)
T 2ho3_A 65 LVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKN 112 (325)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHT
T ss_pred EEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHc
Confidence 4444433 3457788999999999999995 677777766665443
No 251
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=43.83 E-value=24 Score=34.23 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=49.0
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeccCCCCCH-------HHHHHHHHhccC--CCCCeEEEEe
Q 042954 57 ISALLRKCGYRVAA-V--PDGLAAWETLKCRPHSIDLVLTEVELPSISG-------FALLTLVMEHDV--CKNIPVIMMS 124 (720)
Q Consensus 57 L~~lL~~~gyeV~~-A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~--~p~ipVIvLT 124 (720)
+.+.++..|..+.. + .+..++++.+. ...|.|+++-..|+.+| ++.++++++... ..++||++.-
T Consensus 101 ~~~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T 2fli_A 101 ALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDG 177 (220)
T ss_dssp HHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 33444445655444 3 33344444332 23789988877675544 344566655321 1256766544
Q ss_pred ccCCHHHHHHHHHcCCcEEEeC
Q 042954 125 LHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 125 s~~d~e~~~~Al~~GA~dYL~K 146 (720)
+- ..+.+.++++.||+.+++=
T Consensus 178 GI-~~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 178 GV-DNKTIRACYEAGANVFVAG 198 (220)
T ss_dssp SC-CTTTHHHHHHHTCCEEEES
T ss_pred cC-CHHHHHHHHHcCCCEEEEC
Confidence 44 4677778888899888653
No 252
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=43.76 E-value=28 Score=33.55 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCCCCeEEEE--eccCCHHHHHHHHHcCCcEEEeCC
Q 042954 72 PDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCKNIPVIMM--SLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p~ipVIvL--Ts~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.+.+++++.++.-...+|+|=. .+|- ..|+++++.||+.. +++||.+= +.+.....+..+.++||+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~diie~--G~p~~~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~ 85 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVDDVDIIEV--GTPFLIREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLLFDAGADYVTVLG 85 (211)
T ss_dssp CCHHHHHHHHHHHGGGCSEEEE--CHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred CCHHHHHHHHHHhhcCccEEEe--CcHHHHhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeC
Confidence 3455666655432123554322 2242 35789999999874 56787542 332223337889999999988866
Q ss_pred CCH-HHHHHHHHHH
Q 042954 148 VRR-NELRNLWQHV 160 (720)
Q Consensus 148 ~~~-~eL~~~l~~v 160 (720)
... +.+...++.+
T Consensus 86 ~~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 86 VTDVLTIQSCIRAA 99 (211)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH
Confidence 543 3444444443
No 253
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=43.50 E-value=1.2e+02 Score=33.49 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEec--------------cCCCCCHHHHHHHHHhcc
Q 042954 51 DSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEV--------------ELPSISGFALLTLVMEHD 113 (720)
Q Consensus 51 ~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv--------------~MP~~dGieLL~~Ir~~~ 113 (720)
....+.++.+-+.. ++.|.. +.+.++|..+.+. ..|.|++-. .+|....+.++..++...
T Consensus 281 ~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~ 357 (514)
T 1jcn_A 281 VYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF 357 (514)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC
Confidence 34455666665655 566653 7888888777664 378877732 122233467777777653
Q ss_pred CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
++|||.--+-.+...+.+|+..||+....
T Consensus 358 ---~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 358 ---GVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ---CCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 68999998988999999999999887654
No 254
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=42.68 E-value=1.7e+02 Score=26.12 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=51.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY-RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy-eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
..+|..||-++...+..+..+...+. .+. ...+..+ .+.. ..||+|+++.. .+-.++++.++.. +.-
T Consensus 57 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~--~~~D~i~~~~~---~~~~~~l~~~~~~---~gG 125 (183)
T 2yxd_A 57 CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDK--LEFNKAFIGGT---KNIEKIIEILDKK---KIN 125 (183)
T ss_dssp SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGG--CCCSEEEECSC---SCHHHHHHHHHHT---TCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccC--CCCcEEEECCc---ccHHHHHHHHhhC---CCC
Confidence 46899999999999999999887764 233 3556655 2333 35999999876 4556788888765 444
Q ss_pred eEEEEe
Q 042954 119 PVIMMS 124 (720)
Q Consensus 119 pVIvLT 124 (720)
.+++.+
T Consensus 126 ~l~~~~ 131 (183)
T 2yxd_A 126 HIVANT 131 (183)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 455444
No 255
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=42.48 E-value=72 Score=35.46 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.++.+.+ ..+|+|.+|...+... -+++++++++.. +++|||+- .-...+.+..++++||+...+
T Consensus 231 ~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~v~~i~~~~--p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 231 GERVAALVA--AGVDVVVVDTAHGHSKGVIERVRWVKQTF--PDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCCSBHHHHHHHHHHHHHC--TTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHhh--cccceEEecccCCcchhHHHHHHHHHHHC--CCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 444444444 2499999998876543 358999999875 67888873 345678889999999987775
No 256
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=42.13 E-value=1e+02 Score=32.10 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=60.4
Q ss_pred CEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCH-------------H
Q 042954 66 YRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSI-------------S 130 (720)
Q Consensus 66 yeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~-------------e 130 (720)
+.+.. +.+.+.|+...+.....+.|. .++..++.. ++.+++.+++.. ++||.+|.-.... +
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~---~ipV~vMIRPRgGdF~Ys~~E~~~M~~ 115 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSV---QIPVFVMIRPRGGDFLYSDREIEVMKA 115 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTC---CSCEEEECCSSSSCSCCCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhc---CCCeEEEEecCCCCcccCHHHHHHHHH
Confidence 55555 778888888877544223332 233344543 788999998753 6999988765543 5
Q ss_pred HHHHHHHcCCcEEEeCC------CCHHHHHHHHHHH
Q 042954 131 MVLKCMLKGAADFLIKP------VRRNELRNLWQHV 160 (720)
Q Consensus 131 ~~~~Al~~GA~dYL~KP------~~~~eL~~~l~~v 160 (720)
.+..+.++||++++.-- ++.+.++.+|..+
T Consensus 116 dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 116 DIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp HHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
Confidence 67778899999998773 5555666666543
No 257
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=41.80 E-value=1e+02 Score=31.78 Aligned_cols=106 Identities=11% Similarity=0.139 Sum_probs=59.5
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++||.||---..-...+..+.+..+++++. +....+..+.+... ..+ -+..| ++.+-+. +++-
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~g~-~~~~~-----------~~~~l~~---~~~D 67 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA-NGA-EAVAS-----------PDEVFAR---DDID 67 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT-TTC-EEESS-----------HHHHTTC---SCCC
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH-cCC-ceeCC-----------HHHHhcC---CCCC
Confidence 579999998655554454444444788775 44333333333322 111 11212 1223222 2333
Q ss_pred EEEEec--cCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHh
Q 042954 120 VIMMSL--HDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWR 162 (720)
Q Consensus 120 VIvLTs--~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr 162 (720)
+|+++. ....+.+..|+++|..=|+.|| .+.++....+..+-+
T Consensus 68 ~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 68 GIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred EEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 444433 3346778899999999999999 556777766665543
No 258
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=41.69 E-value=16 Score=35.08 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=44.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe-c-cCCCC---CHHHHHHHHHhccCCCCC
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE-V-ELPSI---SGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD-v-~MP~~---dGieLL~~Ir~~~~~p~i 118 (720)
|||||........+.++|+..|+++..+......++.+.. ..+|.||+- = ..+.. .++ +.+.|+... ..+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~~~~~~~~-~~~~i~~~~--~~~ 78 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEKREDIGV-SLDVIKYLG--KRT 78 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTSHHHHTT-HHHHHHHHT--TTS
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChhhhhhhhH-HHHHHHHhc--CCC
Confidence 9999987776678888999999887776543212333332 137877772 1 11222 111 123444322 468
Q ss_pred eEEEEec
Q 042954 119 PVIMMSL 125 (720)
Q Consensus 119 pVIvLTs 125 (720)
||+-+.-
T Consensus 79 PvLGIC~ 85 (195)
T 1qdl_B 79 PILGVCL 85 (195)
T ss_dssp CEEEETH
T ss_pred cEEEEeh
Confidence 8887653
No 259
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=41.06 E-value=66 Score=32.12 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=48.7
Q ss_pred EEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 68 VAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 68 V~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
|+...+.++|+.+.+.- ...+++|=+.++- -++++.++.|++.. ++ .+|-.-.-.+.+.+..++++||. |++-
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~~~I~~l~~~~--p~-~~IGAGTVlt~~~a~~ai~AGA~-fivs 91 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRT--EAGLAAISAIKKAV--PE-AIVGAGTVCTADDFQKAIDAGAQ-FIVS 91 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHC--TT-SEEEEECCCSHHHHHHHHHHTCS-EEEE
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHC--CC-CeEeeccccCHHHHHHHHHcCCC-EEEe
Confidence 33344555544433210 0225555444443 35888999998875 55 45555556678999999999997 5566
Q ss_pred CCCHHHHHH
Q 042954 147 PVRRNELRN 155 (720)
Q Consensus 147 P~~~~eL~~ 155 (720)
|....++..
T Consensus 92 P~~~~evi~ 100 (217)
T 3lab_A 92 PGLTPELIE 100 (217)
T ss_dssp SSCCHHHHH
T ss_pred CCCcHHHHH
Confidence 744344443
No 260
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=40.94 E-value=53 Score=34.47 Aligned_cols=109 Identities=23% Similarity=0.203 Sum_probs=61.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEEEE-CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVAAV-PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A-~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
++||.||---..-...+...|... +++++.+ +.-.+..+.+... ....-+.. +--+++ +. +++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~~~~~~~~-------~~~~ll----~~---~~v 69 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF-ISDIPVLD-------NVPAML----NQ---VPL 69 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT-SCSCCEES-------SHHHHH----HH---SCC
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh-cCCCcccC-------CHHHHh----cC---CCC
Confidence 479999998876665344444444 7888754 3333333333321 10111111 112222 22 223
Q ss_pred eEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
-+|+++.. .-.+.+..|+++|..=|+-|| .+.++....+..+-+..
T Consensus 70 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g 119 (359)
T 3m2t_A 70 DAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSD 119 (359)
T ss_dssp SEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcC
Confidence 34444333 345778899999999999999 56678777777665443
No 261
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=40.32 E-value=2.6e+02 Score=29.51 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=55.6
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc--CCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe-CC
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD--VCKNIPVIMMSLHDSISMVLKCMLKGAADFLI-KP 147 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~--~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~-KP 147 (720)
..+.. .++.+.. ..+|.|++|+.=...+--.+...|+... .....+++|-+...+...+..++..|++..++ |=
T Consensus 50 i~~p~-~~e~a~~--~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V 126 (339)
T 1izc_A 50 IPSTF-VTKVLAA--TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHV 126 (339)
T ss_dssp SCCHH-HHHHHHH--TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTC
T ss_pred CCCHH-HHHHHHh--CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCC
Confidence 44444 4455544 3499999999644334334444454332 11236888899888888899999999987544 33
Q ss_pred CCHHHHHHHHHHH
Q 042954 148 VRRNELRNLWQHV 160 (720)
Q Consensus 148 ~~~~eL~~~l~~v 160 (720)
-+.+++..++..+
T Consensus 127 ~saee~~~~~~~~ 139 (339)
T 1izc_A 127 ETVEEVREFVKEM 139 (339)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 5678887766553
No 262
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=40.28 E-value=92 Score=29.34 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=63.5
Q ss_pred ccEEEEEe------cCHHHHHHHHHHHHhCCCEEEE--EC------CHH-----------HHHHHHHcCCCCceEEEEec
Q 042954 41 VLRVLLVE------ADDSTRQIISALLRKCGYRVAA--VP------DGL-----------AAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 41 ~~rVLIVD------Dd~~~r~~L~~lL~~~gyeV~~--A~------sg~-----------eAle~L~~~~~~pDLVLlDv 95 (720)
+++|-|.- .+......+...|+..| .|.. +. .++ ..++.|+. .|+||.++
T Consensus 2 ~mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~l 76 (152)
T 4fyk_A 2 RRSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAEV 76 (152)
T ss_dssp -CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEEC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEeC
Confidence 34555553 33355677888888887 5532 11 111 12344433 79999988
Q ss_pred cCCC-CCHHHHHHHHHhccCCCCCeEEEEeccC---CHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 96 ELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHD---SISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 96 ~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~---d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
.-|+ ..++|+--... ...|||++.... .....++....| ..|..+.+...+|...|...+..
T Consensus 77 ~~~d~Gt~~EiG~A~a-----lgkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 77 TQPSLGVGYELGRAVA-----LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp SSCCHHHHHHHHHHHH-----TTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHH-----cCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHh
Confidence 8664 24566555553 246899887643 222233333322 45888887778888888876553
No 263
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=40.25 E-value=24 Score=34.58 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=38.7
Q ss_pred CceEEEEeccCCCCCH-------HHHHHHHHhccC--CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 87 SIDLVLTEVELPSISG-------FALLTLVMEHDV--CKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 87 ~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~--~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..|.|+++-..|+..| ++.++++++... ..++||++.-+- ..+.+.+++++||+.+.+=
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI-~~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGV-GPKNAYKVIEAGANALVAG 207 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSC-CTTTHHHHHHHTCCEEEES
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 3789988887775543 455666665420 015777655444 4677778889999888764
No 264
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=40.16 E-value=2.2e+02 Score=29.70 Aligned_cols=89 Identities=16% Similarity=-0.025 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEec------------c--------C-CCCCHHHHH
Q 042954 53 TRQIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTEV------------E--------L-PSISGFALL 106 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlDv------------~--------M-P~~dGieLL 106 (720)
+.+.++.+-+..+..|.. + .+.++|..+.+. .+|.|++.- + + -+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 345555554444544333 3 566777665543 367777641 1 1 245677888
Q ss_pred HHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 107 TLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..+++.. .++|||.-.+-.+.+.+.+++..||+..++=
T Consensus 243 ~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 8887753 5799999999999999999999999988764
No 265
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=39.96 E-value=1.4e+02 Score=30.92 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=62.0
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh-CCCEEEE-ECC-HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK-CGYRVAA-VPD-GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~-A~s-g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.++||.||---..-...+..+.+. .+++++. ++. .+.+.+..+. +.+-..+ +--+++ .. +
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----~~~~~~~------~~~~ll---~~----~ 74 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----TGARGHA------SLTDML---AQ----T 74 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----HCCEEES------CHHHHH---HH----C
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----cCCceeC------CHHHHh---cC----C
Confidence 468999999866555556555555 4788775 433 3333333332 2222111 112222 22 2
Q ss_pred CCeEEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
++-+|+++.. ...+.+..|+++|..=|+.||+ +.++....++.+-+..
T Consensus 75 ~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g 126 (354)
T 3q2i_A 75 DADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAK 126 (354)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence 2334444333 3366788999999999999994 6677777776665443
No 266
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=39.94 E-value=1.9e+02 Score=28.20 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||++..+.. .. +.++.+.. ..+|-||+-...+. .-.++++++++ ..+|+|++-..
T Consensus 20 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 92 (290)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA--AGYDAIIFNPTDAD-GSIANVKRAKE----AGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH-HHHHHHHHHHH----CCCeEEEEecC
Confidence 455677778888998877532 32 23455544 34898887432221 11356676655 35899988643
No 267
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=39.92 E-value=61 Score=32.87 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=56.2
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccC----CCC-CHHHHHHHHHhccCCCCCeEEE-EeccCCHHHHHHHHHcCCcEEEeC
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVEL----PSI-SGFALLTLVMEHDVCKNIPVIM-MSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~M----P~~-dGieLL~~Ir~~~~~p~ipVIv-LTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..++++.+... ..|.+=+|++- |.+ -|.++++.||+.. ++.|+.+ |--..-...+..+.++||+-+...
T Consensus 41 ~L~~~i~~l~~~--G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLAA--GADNIHFDVMDNHYVPNLTFGPMVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHc--CCCEEEEEecCCCcCcchhcCHHHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 456777777653 36777777643 333 3899999999874 5666665 332333456777889999988877
Q ss_pred CCCHHHHHHHHHHHH
Q 042954 147 PVRRNELRNLWQHVW 161 (720)
Q Consensus 147 P~~~~eL~~~l~~vl 161 (720)
......+...++.+-
T Consensus 117 ~Ea~~~~~~~i~~ir 131 (246)
T 3inp_A 117 PEASEHIDRSLQLIK 131 (246)
T ss_dssp GGGCSCHHHHHHHHH
T ss_pred cccchhHHHHHHHHH
Confidence 654456666666653
No 268
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=39.82 E-value=51 Score=36.11 Aligned_cols=53 Identities=23% Similarity=0.222 Sum_probs=31.8
Q ss_pred ccEEEEEecCH---HHHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHcCCCCceEEEEec
Q 042954 41 VLRVLLVEADD---STRQIISALLRKCGYRVAAVPD---G----LAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 41 ~~rVLIVDDd~---~~r~~L~~lL~~~gyeV~~A~s---g----~eAle~L~~~~~~pDLVLlDv 95 (720)
..+|+|||-|+ .....+..+-...++.+..+.. . .++++.++. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 57999999886 2333333333444667666432 2 234555443 3499999999
No 269
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=39.55 E-value=1.4e+02 Score=30.11 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC-CeEEEE
Q 042954 54 RQIISALLRKCGYRVAA---V----PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN-IPVIMM 123 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~~---A----~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~-ipVIvL 123 (720)
.+.+++.|+..|.+++. + .+....+..++. ..+|+|++.. .+.+...+++.+++...... +|+|..
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~--~~~~a~~~~~~~~~~g~~~~~v~~~~~ 229 (368)
T 4eyg_A 156 LAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD--AKPDAMFVFV--PAGQGGNFMKQFAERGLDKSGIKVIGP 229 (368)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH--HCCSEEEEEC--CTTCHHHHHHHHHHTTGGGTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh--cCCCEEEEec--cchHHHHHHHHHHHcCCCcCCceEEec
Confidence 45566677777766542 1 245556666654 2378888754 33467778888877642222 555543
No 270
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=38.98 E-value=66 Score=31.77 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=53.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHcCCCCceEEEEeccCCCCC-----------
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVP-------DGLAAWETLKCRPHSIDLVLTEVELPSIS----------- 101 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-------sg~eAle~L~~~~~~pDLVLlDv~MP~~d----------- 101 (720)
|+++|||.--.-.+-..|.+.|...||+|+... +.....++++. ..+|+||--......+
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~--~~~d~vi~~a~~~~~~~~~~~~~~~~~ 81 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE--IRPHIIIHCAAYTKVDQAEKERDLAYV 81 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH--HCCSEEEECCCCCCHHHHTTCHHHHHH
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh--cCCCEEEECCcccChHHHhcCHHHHHH
Confidence 456999999999999988888888899988753 34444445543 2489998654333211
Q ss_pred -----HHHHHHHHHhccCCCCCeEEEEecc
Q 042954 102 -----GFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 102 -----GieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
-..+++.+++.. +++|++++.
T Consensus 82 ~n~~~~~~l~~~~~~~~----~~~v~~SS~ 107 (287)
T 3sc6_A 82 INAIGARNVAVASQLVG----AKLVYISTD 107 (287)
T ss_dssp HHTHHHHHHHHHHHHHT----CEEEEEEEG
T ss_pred HHHHHHHHHHHHHHHcC----CeEEEEchh
Confidence 134666666543 468888763
No 271
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=38.80 E-value=1.4e+02 Score=27.60 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=52.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhc-cCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEH-DVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~-~~~p 116 (720)
.+|.-||-++...+..++.++..+. .+. ...+..+.+..+.. ..||+|++|.-... .+-.++++.+... ...|
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~p 145 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGTNGWTRE 145 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHhcCccCC
Confidence 4899999999999999998877664 333 36676665543322 45999999864433 2344677777651 1225
Q ss_pred CCeEEEEec
Q 042954 117 NIPVIMMSL 125 (720)
Q Consensus 117 ~ipVIvLTs 125 (720)
.-.+|+-+.
T Consensus 146 gG~l~~~~~ 154 (189)
T 3p9n_A 146 GTVAVVERA 154 (189)
T ss_dssp TCEEEEEEE
T ss_pred CeEEEEEec
Confidence 555555443
No 272
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=38.71 E-value=1.8e+02 Score=25.32 Aligned_cols=81 Identities=15% Similarity=0.061 Sum_probs=51.1
Q ss_pred ccEEEEEecCHH-----HHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhcc
Q 042954 41 VLRVLLVEADDS-----TRQIISALLRKCGYR-V-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHD 113 (720)
Q Consensus 41 ~~rVLIVDDd~~-----~r~~L~~lL~~~gye-V-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~ 113 (720)
+.+||+|-+.-. +...|++.+...|++ + +.+.+..++-..+ ..+|+||+-..+...-. .
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~----~~~DlIi~t~~l~~~~~---------~- 83 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLA----SNYDIVVASNHLIHELD---------G- 83 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHG----GGCSEEEEETTTGGGTT---------T-
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhcc----CCCcEEEECCchHHHhC---------c-
Confidence 568988887763 223556677777876 4 4466666665543 24899999876653211 1
Q ss_pred CCCCCeEEEEeccCCHHHHHHHH
Q 042954 114 VCKNIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 114 ~~p~ipVIvLTs~~d~e~~~~Al 136 (720)
.+..+|+.+...-+.+.+.+.+
T Consensus 84 -~~~~~vi~i~~~l~~~ei~~~i 105 (110)
T 3czc_A 84 -RTNGKLIGLDNLMDDNEIKTKL 105 (110)
T ss_dssp -SCSSEEEEESSTTCHHHHHHHH
T ss_pred -CCCceEEEeeccCCHHHHHHHH
Confidence 1567888888777766555433
No 273
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=38.70 E-value=14 Score=41.41 Aligned_cols=47 Identities=9% Similarity=-0.050 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhc---CCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 225 EAESAYMQNMQGLSQLKCRSAS---NTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~---gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
.++-.|.++|..++..+-..+. ++... ..+...|..||+|||||+-.
T Consensus 327 ~~d~~ha~~V~~~a~~Lf~~l~~~~~l~~~----~~~~~lL~~Aa~LhdiG~~I 376 (513)
T 1u6z_A 327 HIDSEQARRVLDTTMQMYEQWREQQPKLAH----PQLEALLRWAAMLHEVGLNI 376 (513)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHCGGGCC----HHHHHHHHHHHHHTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCcCCC----hhHHHHHHHHHHHHHccCcC
Confidence 3457899999999988765431 21111 22457899999999999954
No 274
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=38.67 E-value=43 Score=34.97 Aligned_cols=110 Identities=11% Similarity=0.129 Sum_probs=62.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHcCCCCceE-EEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLAAWETLKCRPHSIDL-VLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A~sg~eAle~L~~~~~~pDL-VLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
||+||.||---..-.......|... +++|+.+.+...+.++.+.. ..+.+ +..|+ +.+-.. ++
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~-~~~~~~~~~~~-----------~~ll~~---~~ 65 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPF-KEKGVNFTADL-----------NELLTD---PE 65 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHH-HTTTCEEESCT-----------HHHHSC---TT
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhh-CCCCCeEECCH-----------HHHhcC---CC
Confidence 6789999988766554455555444 68887655433222221110 00122 22221 223222 23
Q ss_pred CeEEEEec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSL--HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+=+|+++. ....+.+.+|+++|.+=|+-||+ +.++....+..+-+..
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g 116 (349)
T 3i23_A 66 IELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKG 116 (349)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcC
Confidence 33444433 33467788999999999999995 4788877777665443
No 275
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=38.41 E-value=1e+02 Score=33.36 Aligned_cols=91 Identities=9% Similarity=-0.002 Sum_probs=57.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE---EEE-ECCHHHHHH-HHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR---VAA-VPDGLAAWE-TLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye---V~~-A~sg~eAle-~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
-+|+.||-++...+.+++-++..|.+ +.. ..|..+.+. .+ ...||+|++|. ++. ..+++..+...- .
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~-~~~~l~~a~~~L--k 149 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGT-PVPFIESVALSM--K 149 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSC-CHHHHHHHHHHE--E
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcC-HHHHHHHHHHHh--C
Confidence 47999999999999999999988763 443 556655543 22 23599999997 332 235666554432 1
Q ss_pred CCeEEEEeccCCHH-----HHHHHH-HcCCc
Q 042954 117 NIPVIMMSLHDSIS-----MVLKCM-LKGAA 141 (720)
Q Consensus 117 ~ipVIvLTs~~d~e-----~~~~Al-~~GA~ 141 (720)
.--+|++|. .+.. ....++ ++|+.
T Consensus 150 ~gGll~~t~-t~~~~l~g~~~~~~~rkYg~~ 179 (392)
T 3axs_A 150 RGGILSLTA-TDTAPLSGTYPKTCMRRYMAR 179 (392)
T ss_dssp EEEEEEEEE-CCHHHHTTSSHHHHHHHHSSB
T ss_pred CCCEEEEEe-cchhhhccccHHHHHHHhCCc
Confidence 224777776 4443 334444 56654
No 276
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=38.39 E-value=93 Score=29.49 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=46.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
.+|.-||-++...+..++.++..++ .+.. ..+..+.+. .....||+|++|.-.....-.++++.+.+
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 4899999999999999999988765 3433 455554332 22245999999865333344567777765
No 277
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=38.38 E-value=1.2e+02 Score=29.64 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCEEEEECCH---H---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPDG---L---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg---~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.+++.||.+..+... . +.++.+.. ..+|-||+-...+ .++++.+++ ..+|||++-..
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~~ 94 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSFSN----PQTVQEILH----QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESSCC----HHHHHHHHT----TSSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecCCc----HHHHHHHHH----CCCCEEEEecc
Confidence 4556667777889988775432 2 34555555 4589888765433 567777765 36899988654
Q ss_pred C
Q 042954 127 D 127 (720)
Q Consensus 127 ~ 127 (720)
.
T Consensus 95 ~ 95 (276)
T 3jy6_A 95 M 95 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 278
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=38.31 E-value=85 Score=33.66 Aligned_cols=65 Identities=11% Similarity=-0.117 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+.++.+.+ ..+|+|.+|........ ++++++||+.. +.+|||+= .-.+.+.+..++++||+...+
T Consensus 103 e~~~~a~~--aGvdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 103 QRAEALRD--AGADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHH--TTCCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHH--cCCCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 34444444 34899999986543222 57899999875 67888861 134578889999999987775
No 279
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=38.29 E-value=3.4e+02 Score=27.71 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEecc-CC--CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 53 TRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVE-LP--SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~-MP--~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
....|..+-...|.++.. +.+.+|.-..+.. ..+||=+.-+ +- ..| ++...+|...- ..++.+|.-++-.+
T Consensus 141 ~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vd-l~~t~~L~~~i-p~~~~~VsESGI~t 215 (258)
T 4a29_A 141 ELESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEIN-KENQRKLISMI-PSNVVKVAKLGISE 215 (258)
T ss_dssp HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBC-HHHHHHHHTTS-CTTSEEEEEESSCC
T ss_pred HHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccC-HHHHHHHHhhC-CCCCEEEEcCCCCC
Confidence 344555556677887655 8999998777764 3677755322 22 333 44555555443 14677788899999
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 042954 129 ISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~K 146 (720)
.+.+.+....|++.||+-
T Consensus 216 ~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 216 RNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEC
Confidence 999999999999999986
No 280
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=38.00 E-value=2.2e+02 Score=30.26 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=72.0
Q ss_pred ccEEEEEecCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADD-STRQIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~-~~r~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..+++||-+.+ .....++++....+-.|. .-.+.++..+++.. .|++|+--.. +.-|+-+++.+.. .
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma~-----G 389 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALRY-----G 389 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHHH-----T
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHHC-----C
Confidence 46888887765 366777777776542332 22244444566654 6888875443 3446777777754 4
Q ss_pred CeEEEEeccCCHHHHHHHHHcC---------CcEEEeCCCCHHHHHHHHHHHHh
Q 042954 118 IPVIMMSLHDSISMVLKCMLKG---------AADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~G---------A~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+|||+ |.. .-..+.+..| ..+|+..|-+.++|..+|..++.
T Consensus 390 ~PvI~-s~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 390 CIPVV-ART---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp CEEEE-ESS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred CCEEE-eCC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 68886 332 3455666777 88999999999999999999874
No 281
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=37.96 E-value=70 Score=34.41 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=67.9
Q ss_pred cccccccCCccEEEEEe--cCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------cCCCC
Q 042954 32 RWESFLPRMVLRVLLVE--ADDS---TRQIISALLRKCGYRVAAVPDGLAAWETLK-------------------CRPHS 87 (720)
Q Consensus 32 ~~~~~l~~m~~rVLIVD--Dd~~---~r~~L~~lL~~~gyeV~~A~sg~eAle~L~-------------------~~~~~ 87 (720)
.|... ..+|+||- .++. ....|...|...|++|..-....+.+.+.. .....
T Consensus 33 ~w~~~----~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (365)
T 3pfn_A 33 TWNKS----PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQ 108 (365)
T ss_dssp EESSC----CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTT
T ss_pred ccCCC----CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccC
Confidence 56543 34899995 3333 344556666677899887444443322211 11134
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhcc
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~~ 165 (720)
+|+||+= |.|| .+|...+... ...+|||-+- .|-.+||. +++.+++...|..++++..
T Consensus 109 ~DlvI~l----GGDG-T~L~aa~~~~-~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~~ 166 (365)
T 3pfn_A 109 IDFIICL----GGDG-TLLYASSLFQ-GSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGNA 166 (365)
T ss_dssp CSEEEEE----SSTT-HHHHHHHHCS-SSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSCC
T ss_pred CCEEEEE----cChH-HHHHHHHHhc-cCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCCC
Confidence 6777652 6787 3555555432 2467888664 46778888 7888899999999988754
No 282
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=37.83 E-value=1e+02 Score=32.12 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccCCCCCeEEEE--eccCCHHHHHHHHHcCCcEEEeC-----CCCHHHHHHHHHHHHhhcc
Q 042954 102 GFALLTLVMEHDVCKNIPVIMM--SLHDSISMVLKCMLKGAADFLIK-----PVRRNELRNLWQHVWRRHS 165 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvL--Ts~~d~e~~~~Al~~GA~dYL~K-----P~~~~eL~~~l~~vlr~~~ 165 (720)
.++++++|++. ..+|||++ .+-.+.+.+.++++.|+++.++= --++......+..++..+.
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~~ 253 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHFD 253 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhcc
Confidence 48899999886 47899987 44457899999999999999765 3457777777777776553
No 283
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=37.72 E-value=83 Score=33.82 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCC---C------EE-EEECCHHHHHHHHHcCCCCceEEEEeccC-CC------CCHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCG---Y------RV-AAVPDGLAAWETLKCRPHSIDLVLTEVEL-PS------ISGFA 104 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~g---y------eV-~~A~sg~eAle~L~~~~~~pDLVLlDv~M-P~------~dGie 104 (720)
.+|.+||=|+.+.+..++.|.... + .+ +...|+.+.++.+......||+||+|.-- |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 589999999999999998875321 1 13 23678888776542112459999999854 41 23457
Q ss_pred HHHHH
Q 042954 105 LLTLV 109 (720)
Q Consensus 105 LL~~I 109 (720)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 284
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=37.68 E-value=95 Score=33.22 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=51.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC---------------CCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC---------------GYR-VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFA 104 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~---------------gye-V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGie 104 (720)
.+|+.||-++...+.+++-++.. |.. +.. ..|..+.+..+ ...||+|++|- | ....+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~-~~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--F-GSPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--S-SCCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--C-CCHHH
Confidence 47999999999999999988776 653 433 66776665543 13599999985 3 34456
Q ss_pred HHHHHHhccCCCCCeEEEEecc
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
++......- +.--+|++|..
T Consensus 146 ~l~~a~~~l--k~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSA--KRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHE--EEEEEEEEEEC
T ss_pred HHHHHHHhc--CCCCEEEEEee
Confidence 666554332 22236777763
No 285
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=37.66 E-value=88 Score=30.29 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHcCCCCce-EEEEeccCCCC---CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 72 PDGLAAWETLKCRPHSID-LVLTEVELPSI---SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 72 ~sg~eAle~L~~~~~~pD-LVLlDv~MP~~---dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.+..+..+.+... .+| |.|.|+..... ..+++++.|++.. ++||++.....+.+.+.++++.||+....-
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~---~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVSVN 106 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3556666666553 367 55666543211 2467888888753 689999888888889999999998877743
No 286
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=37.64 E-value=1.6e+02 Score=30.49 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=61.8
Q ss_pred CccEEEEEecCHHHHHHHHHHHHh--CCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRK--CGYRVAA-VP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~--~gyeV~~-A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
.++||.||---..+.......|.. .+++++. ++ +.+.+.+..+.. ...-+..| ++.+-+.
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--~~~~~~~~-----------~~~ll~~--- 80 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV--GNPAVFDS-----------YEELLES--- 80 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH--SSCEEESC-----------HHHHHHS---
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh--CCCcccCC-----------HHHHhcC---
Confidence 468999999874444444444544 3688765 43 333333333321 11112222 2223222
Q ss_pred CCCeEEEEec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSL--HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+++=+|+++. ..-.+.+..|+++|..=|+-||+ +.++....+..+-+..
T Consensus 81 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 133 (340)
T 1zh8_A 81 GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSE 133 (340)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 2333444433 33467888999999999999995 7788887777765443
No 287
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=37.60 E-value=1e+02 Score=31.19 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.++++++|+.. ++||++=.+-.+.+.+.+++..||+.+++-.
T Consensus 194 ~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 58899998863 6888877777779999999999999998764
No 288
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=37.57 E-value=90 Score=32.11 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=59.2
Q ss_pred CccEEEEEecCHHHHHHHHHHH-HhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALL-RKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL-~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.+++|.||---..-...+..+. ...+++++. ++.-.+..+.+... ...+-+..| ++.+-.. ++
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~~-----------~~~~l~~---~~ 71 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTN-----------YKDMIDT---EN 71 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEESC-----------HHHHHTT---SC
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccCC-----------HHHHhcC---CC
Confidence 3579999987554444444444 234788765 44333334333322 112223322 1222221 22
Q ss_pred CeEEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhh
Q 042954 118 IPVIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRR 163 (720)
Q Consensus 118 ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~ 163 (720)
+-+|+++.. ...+.+..|++.|..=|+.||+ +.++....++.+-+.
T Consensus 72 ~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~ 121 (346)
T 3cea_A 72 IDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC
T ss_pred CCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC
Confidence 334444333 3457788999999988999995 567776666555443
No 289
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=37.41 E-value=2.7e+02 Score=26.20 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=53.5
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHcCC-CCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVA-AVPDGLAAWETLKCRP-HSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~-~A~sg~eAle~L~~~~-~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.+|.-||-++......++.+...|+ .|. ...+..+.+..+.... ..||+|++|...+ .-..+++.+...- .+.
T Consensus 84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~L-~pg 160 (223)
T 3duw_A 84 GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKLS-RPG 160 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHTC-CTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHhc-CCC
Confidence 5899999999999999999987765 233 3677777776554321 3599999997532 2346677776553 244
Q ss_pred CeEEEEe
Q 042954 118 IPVIMMS 124 (720)
Q Consensus 118 ipVIvLT 124 (720)
- +|++.
T Consensus 161 G-~lv~~ 166 (223)
T 3duw_A 161 T-VIIGD 166 (223)
T ss_dssp C-EEEEE
T ss_pred c-EEEEe
Confidence 3 55443
No 290
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=37.35 E-value=57 Score=33.03 Aligned_cols=88 Identities=9% Similarity=-0.094 Sum_probs=55.6
Q ss_pred HHHHHHHH---hCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccC-CC-CCHHHHHHHHHhccC--CCCCeEEEEecc
Q 042954 55 QIISALLR---KCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVEL-PS-ISGFALLTLVMEHDV--CKNIPVIMMSLH 126 (720)
Q Consensus 55 ~~L~~lL~---~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~M-P~-~dGieLL~~Ir~~~~--~p~ipVIvLTs~ 126 (720)
..+++++. ..|..+.. +.+.+|+...+... .|+|=+.... -. .-+++.+.+|...-. ..++++|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 45555554 45877655 77888877666542 5777553322 11 112444444443320 016899999999
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 042954 127 DSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 127 ~d~e~~~~Al~~GA~dYL~K 146 (720)
.+.+.+.++.. |++.+++-
T Consensus 218 ~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEEC
T ss_pred CCHHHHHHHHc-CCCEEEEe
Confidence 99999999999 99999874
No 291
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=36.98 E-value=77 Score=32.98 Aligned_cols=107 Identities=8% Similarity=0.122 Sum_probs=59.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEEEE-CC-HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVAAV-PD-GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A-~s-g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
+++||.||---..-.. +...|... +++++.+ +. .+.+.+..+. +.+ +..+. ++.+-.. +
T Consensus 4 ~~~~vgiiG~G~~g~~-~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----~g~-------~~~~~---~~~~l~~---~ 65 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYV-MADAYTKSEKLKLVTCYSRTEDKREKFGKR----YNC-------AGDAT---MEALLAR---E 65 (354)
T ss_dssp CCEEEEEECCSHHHHH-HHHHHTTCSSEEEEEEECSSHHHHHHHHHH----HTC-------CCCSS---HHHHHHC---S
T ss_pred CcceEEEEccCHHHHH-HHHHHHhCCCcEEEEEECCCHHHHHHHHHH----cCC-------CCcCC---HHHHhcC---C
Confidence 3579999988664444 44445444 7887764 32 3333333322 111 11111 1222222 2
Q ss_pred CCeEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
++-+|+++.. ...+.+..|+++|..=|+.|| .+.++....+..+-+..
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~ 117 (354)
T 3db2_A 66 DVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETG 117 (354)
T ss_dssp SCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcC
Confidence 3334444333 346778899999999999999 55677777777665543
No 292
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=36.85 E-value=1.7e+02 Score=29.60 Aligned_cols=81 Identities=12% Similarity=-0.014 Sum_probs=49.2
Q ss_pred cEEEEE-e-cCHH---HHHHHHHHHHhCCCEEEEE------CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLV-E-ADDS---TRQIISALLRKCGYRVAAV------PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIV-D-Dd~~---~r~~L~~lL~~~gyeV~~A------~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|.|| + ++.. ..+.++..|+..|++|... .+....+..+.. ..+|+|++.. .+.+...+++.++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~--~~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS--FNPDAIYITG--YYPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH--TCCSEEEECS--CHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh--cCCCEEEEcc--chhHHHHHHHHHH
Confidence 477777 3 3433 3355677777778776532 355566666665 3489888843 2345667888888
Q ss_pred hccCCCCCeEEEEeccCC
Q 042954 111 EHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d 128 (720)
+.. -.+|+|...+...
T Consensus 226 ~~g--~~~~~~~~~~~~~ 241 (366)
T 3td9_A 226 QLG--FTGYILAGDGADA 241 (366)
T ss_dssp HTT--CCSEEEECGGGCS
T ss_pred HcC--CCceEEeeCCcCC
Confidence 765 4567665444444
No 293
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=36.84 E-value=1.3e+02 Score=31.82 Aligned_cols=113 Identities=13% Similarity=0.102 Sum_probs=62.0
Q ss_pred ccEEEEEecCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHcCCCCce--EEEEeccCCCCCHHHHHHHHHhc
Q 042954 41 VLRVLLVEADD---STRQIISALLRKCGYRVAA-V-P-DGLAAWETLKCRPHSID--LVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDDd~---~~r~~L~~lL~~~gyeV~~-A-~-sg~eAle~L~~~~~~pD--LVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
++||.||---. .-..-+..+....+++++. + + +.+.+.+..+... +. -+. .|--++|..-+..
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g--~~~~~~~-------~~~~~ll~~~~~~ 82 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLG--VDSERCY-------ADYLSMFEQEARR 82 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTT--CCGGGBC-------SSHHHHHHHHTTC
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhC--CCcceee-------CCHHHHHhccccc
Confidence 58999998765 3233333333333588775 4 3 4444544444321 11 111 1223444432211
Q ss_pred cCCCCCeEEEEec--cCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 113 DVCKNIPVIMMSL--HDSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 113 ~~~p~ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
. +++=+|+++. ....+.+..|+++|..=|+-|| .+.++....+..+-+..
T Consensus 83 ~--~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 136 (398)
T 3dty_A 83 A--DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHN 136 (398)
T ss_dssp T--TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTT
T ss_pred C--CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence 1 2333333433 3346788999999999999999 46678877777665543
No 294
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=36.74 E-value=70 Score=30.15 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=40.8
Q ss_pred ccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE--eccCCCCCH---HHHHHHHHh
Q 042954 37 LPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLT--EVELPSISG---FALLTLVME 111 (720)
Q Consensus 37 l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLl--Dv~MP~~dG---ieLL~~Ir~ 111 (720)
|.+|++||+++-|--.....+.++ ++.+.. ..+|+||+ |+.-.+..- .++++.+++
T Consensus 1 ~~~~~mri~~iSD~H~~~~~~~~~-----------------~~~~~~--~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~ 61 (228)
T 1uf3_A 1 MRRTVRYILATSNPMGDLEALEKF-----------------VKLAPD--TGADAIALIGNLMPKAAKSRDYAAFFRILSE 61 (228)
T ss_dssp CCCCCCEEEEEECCTTCHHHHHHH-----------------HTHHHH--HTCSEEEEESCSSCTTCCHHHHHHHHHHHGG
T ss_pred CccceEEEEEEeeccCCHHHHHHH-----------------HHHHhh--cCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Confidence 456778999999876544333322 233332 13788776 664332121 246666654
Q ss_pred ccCCCCCeEEEEeccCCH
Q 042954 112 HDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~ 129 (720)
. .+|++++.++-|.
T Consensus 62 ~----~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 62 A----HLPTAYVPGPQDA 75 (228)
T ss_dssp G----CSCEEEECCTTSC
T ss_pred c----CCcEEEECCCCCc
Confidence 3 3689999887664
No 295
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=36.57 E-value=1.8e+02 Score=30.89 Aligned_cols=108 Identities=11% Similarity=0.050 Sum_probs=69.8
Q ss_pred ccEEEEEecCH-HHHHHHHHHHHhCCCEEE-EE-CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADD-STRQIISALLRKCGYRVA-AV-PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~-~~r~~L~~lL~~~gyeV~-~A-~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..+++||-+.+ .....++++....+-.|. .. ....+..+++.. .|++|+--.. +.-|+-+++.+.. .
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~g~~~lEAma~-----G 390 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSRF-EPCGLTQLYGLKY-----G 390 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHHH-----T
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCcc-CCCcHHHHHHHHC-----C
Confidence 46777776654 456677777766542232 22 244444466654 6787765442 3456677777754 4
Q ss_pred CeEEEEeccCCHHHHHHHHHcC---------CcEEEeCCCCHHHHHHHHHHHHh
Q 042954 118 IPVIMMSLHDSISMVLKCMLKG---------AADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~G---------A~dYL~KP~~~~eL~~~l~~vlr 162 (720)
+|||+. .. .-..+.+..| ..+|+..|.+.++|..+|..++.
T Consensus 391 ~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 391 TLPLVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp CEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred CCEEEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 688754 22 3455666777 89999999999999999999874
No 296
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=36.42 E-value=32 Score=35.56 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=59.5
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH--HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDG--LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg--~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.++||.||---..-...+..+....+++++.+.+. +.+.+..+. ....-+..| ++.+-.. ++
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~--~~~~~~~~~-----------~~~ll~~---~~ 67 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANK--YHLPKAYDK-----------LEDMLAD---ES 67 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---C--CCCSCEESC-----------HHHHHTC---TT
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHH--cCCCcccCC-----------HHHHhcC---CC
Confidence 35799999886555555555555556777764332 222222221 111111111 1223222 23
Q ss_pred CeEEEEec--cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSL--HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs--~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+-+|+++. ....+.+..|+++|..=|+.||+ +.+++...+..+-+..
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~ 118 (329)
T 3evn_A 68 IDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118 (329)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcC
Confidence 33444433 33467788999999999999994 6777877777665543
No 297
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=36.42 E-value=1.2e+02 Score=30.55 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=65.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++++||-+.+ ...+..+++..+. .|.......+..+++.. .|++|+-... +.-|..+++.+.. .+|
T Consensus 229 ~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a~-----G~P 296 (374)
T 2iw1_A 229 TLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAITA-----GLP 296 (374)
T ss_dssp EEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHHH-----TCC
T ss_pred eEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHHC-----CCC
Confidence 4677776644 2345555554432 34444434455555543 5777775433 3446777887754 468
Q ss_pred EEEEeccCCHHHHHHHHHcCCcEEEeC-CCCHHHHHHHHHHHHhh
Q 042954 120 VIMMSLHDSISMVLKCMLKGAADFLIK-PVRRNELRNLWQHVWRR 163 (720)
Q Consensus 120 VIvLTs~~d~e~~~~Al~~GA~dYL~K-P~~~~eL~~~l~~vlr~ 163 (720)
||+...... .+.+..|..+|+.. |.+.++|...|..++..
T Consensus 297 vi~~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 297 VLTTAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp EEEETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred EEEecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 886433222 23455567889997 89999999999998763
No 298
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=36.17 E-value=2e+02 Score=29.27 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=34.9
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.|++|+. . .|+ +++.+. -.+|||+.........+ ++.| .+++.. .+.++|...|..++.
T Consensus 275 ad~~v~~----S-~g~-~lEA~a-----~G~PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 275 SLLLVTD----S-GGL-QEEGAA-----LGVPVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp EEEEEES----C-HHH-HHHHHH-----TTCCEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred CcEEEEC----C-cCH-HHHHHH-----cCCCEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 5666654 2 344 444443 35788875433333222 4455 467774 488999988888775
No 299
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=36.13 E-value=2.1e+02 Score=28.67 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=54.3
Q ss_pred CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCC-CCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCC
Q 042954 64 CGYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELP-SIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGA 140 (720)
Q Consensus 64 ~gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA 140 (720)
.|..+. .+.+..|+...++. .+|+|=+ .| ..- |.++++.|+.-. +++|++. |+--+.+.+.+.+.+|+
T Consensus 126 ~gi~~ipGv~TptEi~~A~~~---Gad~vK~---FPa~~~gG~~~lkal~~p~--p~ip~~p-tGGI~~~n~~~~l~aGa 196 (232)
T 4e38_A 126 IGIDIVPGVNNPSTVEAALEM---GLTTLKF---FPAEASGGISMVKSLVGPY--GDIRLMP-TGGITPSNIDNYLAIPQ 196 (232)
T ss_dssp HTCEEECEECSHHHHHHHHHT---TCCEEEE---CSTTTTTHHHHHHHHHTTC--TTCEEEE-BSSCCTTTHHHHHTSTT
T ss_pred cCCCEEcCCCCHHHHHHHHHc---CCCEEEE---CcCccccCHHHHHHHHHHh--cCCCeee-EcCCCHHHHHHHHHCCC
Confidence 355554 38899999998864 3788866 66 343 899999998754 7888885 55556788999999997
Q ss_pred cEEEe
Q 042954 141 ADFLI 145 (720)
Q Consensus 141 ~dYL~ 145 (720)
...+.
T Consensus 197 ~~~vg 201 (232)
T 4e38_A 197 VLACG 201 (232)
T ss_dssp BCCEE
T ss_pred eEEEE
Confidence 65543
No 300
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=36.11 E-value=6 Score=42.39 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.1
Q ss_pred CCCCEEEEEecCC----cEEEeccCc
Q 042954 1 MKMGEVVVSSEGG----MDIDLETEK 22 (720)
Q Consensus 1 LmgG~I~v~S~~g----f~i~lp~~~ 22 (720)
.|||+|+|.|.+| |+|.||...
T Consensus 224 ~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 224 SLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp HTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred HCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 3899999999987 999999765
No 301
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=36.02 E-value=1.6e+02 Score=31.20 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEecc----CC-CCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 55 QIISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVE----LP-SISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~----MP-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
+.++.+-+..+..|.. +.+.++|..+++. .+|.|.+.-. +. ...-++++..+++.- ..++|||.-.+-.
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~~~ipvia~GGI~ 290 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAA-QGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-TTSSCEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHh-CCCCEEEEECCCC
Confidence 4455555555655443 6788888776653 3788887431 11 124567888887753 1379999999999
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
+.+.+.+++..||+...+-
T Consensus 291 ~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEeec
Confidence 9999999999999888764
No 302
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=35.75 E-value=60 Score=30.83 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=45.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC---EEEE-ECCHHHHHHHHHcCCCC-ceEEEEeccCCCCCHHHHHHHHHh
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY---RVAA-VPDGLAAWETLKCRPHS-IDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy---eV~~-A~sg~eAle~L~~~~~~-pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
.+|.-||-++...+..++.++..++ .+.. ..|..+.+..+ .... ||+|++|.-....+-.++++.+.+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP--QNQPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC--CSSCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh--ccCCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 4899999999999999999887775 3444 44554432211 1246 999999875433344567777754
No 303
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=35.75 E-value=50 Score=32.80 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=53.5
Q ss_pred CHHHHHHHHHcCCCCceEEEEecc----CCCC-CHHHHHHHHHhccCCCCCeEE--EEeccCCHHHHHHHHHcCCcEEEe
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVE----LPSI-SGFALLTLVMEHDVCKNIPVI--MMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~----MP~~-dGieLL~~Ir~~~~~p~ipVI--vLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+..+.++.+.+. ..|+|=+|+. .|.+ -|.++++.||+.. +.|+. +|+... ...+..++++||+.+..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~---~~~~~vhlmv~dp-~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLT---KKTLDVHLMIVEP-EKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC---CSEEEEEEESSSG-GGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhc---CCcEEEEEEccCH-HHHHHHHHHcCCCEEEE
Confidence 445556666542 3676666652 1222 3779999999763 45666 777432 34567888999999977
Q ss_pred CCC--CHHHHHHHHHHHHhh
Q 042954 146 KPV--RRNELRNLWQHVWRR 163 (720)
Q Consensus 146 KP~--~~~eL~~~l~~vlr~ 163 (720)
... ..+++...++.+...
T Consensus 92 h~e~~~~~~~~~~~~~i~~~ 111 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQIREL 111 (230)
T ss_dssp ECSTTTCTTHHHHHHHHHHT
T ss_pred CcccccchhHHHHHHHHHHc
Confidence 766 445566666665443
No 304
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=35.74 E-value=1.5e+02 Score=29.12 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=46.0
Q ss_pred CHHHHHHHHHcCCCCceE-EEEeccCCCC---CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 73 DGLAAWETLKCRPHSIDL-VLTEVELPSI---SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDL-VLlDv~MP~~---dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
+..+..+.+... ..|. .|.|+..... ..+++++.|++. ..+||++..+-.+.+.+.+++..||+..+.-.
T Consensus 31 d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 31 DPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred CHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 445544555442 2554 4445432211 235677777764 47999999888889999999999999887653
No 305
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=35.65 E-value=25 Score=36.45 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=61.6
Q ss_pred cccccccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 32 RWESFLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 32 ~~~~~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
.|+.--.+ .++|.||-....-.+.+...|+..|++|.......+.+ ..+|+||+= |.|| .+|+..+.
T Consensus 21 ~~~~~~~~-~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIvl----GGDG-T~L~aa~~ 87 (278)
T 1z0s_A 21 YFQGGGGG-GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVSV----GGDG-TILRILQK 87 (278)
T ss_dssp ----------CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEEE----ECHH-HHHHHHTT
T ss_pred EEcCCCcc-ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEEE----CCCH-HHHHHHHH
Confidence 56542222 24788885422226778888999999988755433221 137887752 5677 46666665
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
... . +|||-+.. |-.+||. ++.++++..+|..+++
T Consensus 88 ~~~-~-~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 88 LKR-C-PPIFGINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp CSS-C-CCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred hCC-C-CcEEEECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 542 2 89987763 5567776 4677788888888876
No 306
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=35.62 E-value=52 Score=35.75 Aligned_cols=96 Identities=11% Similarity=0.196 Sum_probs=61.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
....|++||.++...+.++ ..|+.++..+ +-.+.|+.+. -...|+||+-+.- +..-+.++..+|+.. +++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~ag--i~~A~~viv~~~~-~~~n~~i~~~ar~~~--p~~ 96 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAG--AAKAEVLINAIDD-PQTNLQLTEMVKEHF--PHL 96 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTT--TTTCSEEEECCSS-HHHHHHHHHHHHHHC--TTC
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcC--CCccCEEEECCCC-hHHHHHHHHHHHHhC--CCC
Confidence 4568999999988765543 4577665522 2233444432 2458888886632 223456777778776 788
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+||+.+.. .+......++||+..+.-
T Consensus 97 ~Iiara~~--~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 97 QIIARARD--VDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp EEEEEESS--HHHHHHHHHTTCSSCEET
T ss_pred eEEEEECC--HHHHHHHHHCCCCEEECc
Confidence 88887754 456666778999876643
No 307
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=35.58 E-value=1.2e+02 Score=30.83 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.+|||+.-...... +.++.| .+|+..+ +.++|...|..++.
T Consensus 301 G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 301 GKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp TCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 57888664323322 235668 8999988 99999999998875
No 308
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=35.47 E-value=55 Score=33.78 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=34.1
Q ss_pred CccEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHcCCCCceEEEEec
Q 042954 40 MVLRVLLVEADD---STRQIISALLRKCGYRVAAVP---DGL----AAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 40 m~~rVLIVDDd~---~~r~~L~~lL~~~gyeV~~A~---sg~----eAle~L~~~~~~pDLVLlDv 95 (720)
...+|+++|-|. .....+..+.+..|+.+.... +.. ++++.++. ..+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 356899999883 444445555555577666542 333 45555543 3499999998
No 309
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=35.25 E-value=29 Score=32.89 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=43.7
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe-ccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 44 VLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTE-VELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 44 VLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlD-v~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
|+|||-.......+.++|+..|+++..+.... .++.+.. ..+|.||+- -.-|...+ .+.+.|+... ...+||+-
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~~~~-~~~~~i~~~~-~~~~PilG 77 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLENTG-NCEKVLEHYD-EFNVPILG 77 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTTCCT-THHHHHHTGG-GTCSCEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChhhhh-hHHHHHHHHh-hCCCeEEE
Confidence 99999888888889999999998877755432 2222332 237766652 11222222 1234444321 13567776
Q ss_pred Ee
Q 042954 123 MS 124 (720)
Q Consensus 123 LT 124 (720)
+.
T Consensus 78 IC 79 (189)
T 1wl8_A 78 IC 79 (189)
T ss_dssp ET
T ss_pred Ec
Confidence 65
No 310
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=35.25 E-value=59 Score=32.45 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=56.4
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeccCCCCCH-------HHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 60 LLRKCGYRVAAVP---DGLAAWETLKCRPHSIDLVLTEVELPSISG-------FALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 60 lL~~~gyeV~~A~---sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
.+++.|..+..+- +..+.++.+... ..+|+|++=-.-|+..| ++-++++|+.. ++++ |.+.+--+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~-I~VdGGI~~ 184 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLN-IQVDGGLNI 184 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCE-EEEESSCCH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCe-EEEECCCCH
Confidence 6677787766543 334445444320 13899988777776655 66677777764 3555 456666778
Q ss_pred HHHHHHHHcCCcEEEeCC
Q 042954 130 SMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~KP 147 (720)
+.+..++++||+-++.-.
T Consensus 185 ~ti~~~~~aGAd~~V~Gs 202 (227)
T 1tqx_A 185 ETTEISASHGANIIVAGT 202 (227)
T ss_dssp HHHHHHHHHTCCEEEESH
T ss_pred HHHHHHHHcCCCEEEEeH
Confidence 899999999999887653
No 311
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=35.02 E-value=1.5e+02 Score=31.54 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEecc----CC-CCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 54 RQIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVE----LP-SISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~----MP-~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
.+.++.+-+..+..|+ .+.+.++|..+.+. .+|.|++.-. +. +..-++++.++++.-. ..+|||+-.+-
T Consensus 218 ~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~-~~ipVia~GGI 293 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVN-KRVPIVFDSGV 293 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHT-TSSCEEECSSC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhC-CCCeEEEECCC
Confidence 3445555554554443 36788888776653 3788887431 11 2345788888876531 36999999999
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 042954 127 DSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 127 ~d~e~~~~Al~~GA~dYL~K 146 (720)
.+...+.+++..||+....=
T Consensus 294 ~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 294 RRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999988764
No 312
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=34.86 E-value=1.7e+02 Score=31.42 Aligned_cols=95 Identities=8% Similarity=0.080 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCC----EEEEECCHHHHHHHHHcCCCCc----eEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 54 RQIISALLRKCGY----RVAAVPDGLAAWETLKCRPHSI----DLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 54 r~~L~~lL~~~gy----eV~~A~sg~eAle~L~~~~~~p----DLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
...+.++++..|. .+...-+..+..+++.. . |++|+--.. +.-|+-+++.+.. .+|||.- .
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~-Eg~~~~~lEAma~-----G~PvI~s-~ 389 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFY-EPFGLAPVEAMAS-----GLPAVVT-R 389 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSC-BCCCSHHHHHHHT-----TCCEEEE-S
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECccc-CCCCcHHHHHHHc-----CCCEEEe-c
Confidence 6777777777653 33334456777777765 6 888875432 3346677777753 4688754 3
Q ss_pred cCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 126 HDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 126 ~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
. ....+.+..|..+|+..|.+.++|..+|..++.
T Consensus 390 ~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 390 N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 2 234556677888999999999999999998875
No 313
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=34.45 E-value=78 Score=30.80 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=47.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE---EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR---VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye---V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+|..||-++...+..++.++..|+. |.. ..+..+.+..+. ...||+|++|...+. -.++++.+...
T Consensus 82 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~~~~ 152 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAAWPL 152 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHHHHH
Confidence 58999999999999999999987764 554 556666544332 245999999975443 33466666544
No 314
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=34.29 E-value=39 Score=32.33 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=21.4
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPD 73 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~s 73 (720)
|+++|+|+|........+.+.|+..|+++..+.+
T Consensus 1 M~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 1 MRMKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp --CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred CccEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 5679999974422334467777778887776653
No 315
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=34.17 E-value=1e+02 Score=30.44 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=46.0
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeccCC---CCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 73 DGLAAWETLKCRPHSID-LVLTEVELP---SISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 73 sg~eAle~L~~~~~~pD-LVLlDv~MP---~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..+..+.+... .+| |.|.|+.-. ...-++++++|++.. .+|||+--+-.+.+.+.+++..||+..++-
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~---~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 344444444432 255 344565321 122378999998763 799999988899999999999998877643
No 316
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=34.10 E-value=1.2e+02 Score=29.80 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=54.3
Q ss_pred CHHHHHHHHHcCCCCce-EEEEecc----CCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc-----C-Cc
Q 042954 73 DGLAAWETLKCRPHSID-LVLTEVE----LPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK-----G-AA 141 (720)
Q Consensus 73 sg~eAle~L~~~~~~pD-LVLlDv~----MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~-----G-A~ 141 (720)
+..+..+.+.. ..++ |++.++. +.+. .+++++++++.. ++|||...+-.+.+.+.++++. | |+
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCCC-CHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCcC-CHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 45565444544 3367 5566652 3333 489999998764 6899999999999999999988 9 98
Q ss_pred EEEe------CCCCHHHHHHH
Q 042954 142 DFLI------KPVRRNELRNL 156 (720)
Q Consensus 142 dYL~------KP~~~~eL~~~ 156 (720)
+.++ .+++..+++..
T Consensus 219 gv~vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHHH
Confidence 8765 35666655543
No 317
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=34.07 E-value=3.7e+02 Score=29.73 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=67.7
Q ss_pred cEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeccCC-----------CCCHH
Q 042954 42 LRVLLVE----ADDSTRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVELP-----------SISGF 103 (720)
Q Consensus 42 ~rVLIVD----Dd~~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~MP-----------~~dGi 103 (720)
..++++| +...+.+.++.+-+.. +..|. .+.+.++|..+++. ..|.|++.+.-- +..-+
T Consensus 244 ~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~ 320 (496)
T 4fxs_A 244 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQI 320 (496)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCHH
T ss_pred CceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccHH
Confidence 5677776 4455667777776665 44443 37788888877764 379888753210 12234
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
.++..+.+......+|||.-.+-.+.+.+.+|+.+||+..+.-
T Consensus 321 ~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 321 TAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 5555555422113589999888889999999999999887765
No 318
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=34.06 E-value=2.2e+02 Score=29.21 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=50.5
Q ss_pred cEEEEEecCHHH----HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVEADDST----RQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~----r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|.||-++... .+.+++.|+..|.+|+. ..+....+..++. ..+|+||+.. .+.+...+++.++
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~--~~~dav~~~~--~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQ--AGVEYVVHQN--VAGPVANILKDAK 219 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHH--TTCCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHh--cCCCEEEEec--CcchHHHHHHHHH
Confidence 466666544332 34567777777877653 1245566666665 3489988744 3445678888888
Q ss_pred hccCCCCCeEEEEeccCCHHH
Q 042954 111 EHDVCKNIPVIMMSLHDSISM 131 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~ 131 (720)
+.. -.+|++......+...
T Consensus 220 ~~g--~~~~~~~~~~~~~~~~ 238 (392)
T 3lkb_A 220 RLG--LKMRHLGAHYTGGPDL 238 (392)
T ss_dssp HTT--CCCEEEECGGGCSHHH
T ss_pred HcC--CCceEEEecCcccHHH
Confidence 765 4567665544444443
No 319
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=34.01 E-value=1.5e+02 Score=32.56 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=62.0
Q ss_pred ccccCC-ccEEEEEec----CHHHHHHHHHHHHh-CCCEEEE-EC-CHHHHHHHHHcCCCCce--EEEEeccCCCCCHHH
Q 042954 35 SFLPRM-VLRVLLVEA----DDSTRQIISALLRK-CGYRVAA-VP-DGLAAWETLKCRPHSID--LVLTEVELPSISGFA 104 (720)
Q Consensus 35 ~~l~~m-~~rVLIVDD----d~~~r~~L~~lL~~-~gyeV~~-A~-sg~eAle~L~~~~~~pD--LVLlDv~MP~~dGie 104 (720)
..++.| ++||.||-- --.-...+..+.+. .+++|+. ++ +.+.+.++.+.. .+. .+..|
T Consensus 32 ~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~~~~~d---------- 99 (479)
T 2nvw_A 32 STVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL--QLKHATGFDS---------- 99 (479)
T ss_dssp GSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT--TCTTCEEESC----------
T ss_pred CCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc--CCCcceeeCC----------
Confidence 334434 589999997 33333444444444 4788775 44 333333333331 121 22222
Q ss_pred HHHHHHhccCCCCCeEEEEecc--CCHHHHHHHHHcC------CcEEEeCCC--CHHHHHHHHHHHHhh
Q 042954 105 LLTLVMEHDVCKNIPVIMMSLH--DSISMVLKCMLKG------AADFLIKPV--RRNELRNLWQHVWRR 163 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs~--~d~e~~~~Al~~G------A~dYL~KP~--~~~eL~~~l~~vlr~ 163 (720)
++.+-+. +++=+|+++.. .-.+.+..|+++| .+=|+-||+ +.++...++..+-+.
T Consensus 100 -~~ell~~---~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~ 164 (479)
T 2nvw_A 100 -LESFAQY---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 164 (479)
T ss_dssp -HHHHHHC---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred -HHHHhcC---CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 2223222 23444444433 3357788999999 888999995 577777766665443
No 320
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=34.00 E-value=75 Score=30.13 Aligned_cols=77 Identities=25% Similarity=0.286 Sum_probs=44.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHcCCCCceEEEEecc-CCCCCH--HHHHHHHHhccCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDG---LAAWETLKCRPHSIDLVLTEVE-LPSISG--FALLTLVMEHDVC 115 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg---~eAle~L~~~~~~pDLVLlDv~-MP~~dG--ieLL~~Ir~~~~~ 115 (720)
++|+|||.-..+-..+.+.|+..|+++...... ++..+.+... ..+++||+-=. -|...| .++++.+ .
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~gGpg~~~~~~~~~~l~~~~---~-- 74 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLSPGPGVPSEAGCMPELLTRL---R-- 74 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEECCCSSCGGGSTTHHHHHHHH---B--
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEECCCCcCchhCchHHHHHHHH---h--
Confidence 379999977777788888999999887776544 4443444321 12456665321 121123 2333332 2
Q ss_pred CCCeEEEEe
Q 042954 116 KNIPVIMMS 124 (720)
Q Consensus 116 p~ipVIvLT 124 (720)
..+||+=+.
T Consensus 75 ~~~PilGIC 83 (192)
T 1i1q_B 75 GKLPIIGIC 83 (192)
T ss_dssp TTBCEEEET
T ss_pred cCCCEEEEC
Confidence 457888665
No 321
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=33.93 E-value=1.5e+02 Score=28.90 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=52.1
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeccCCC---CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc---CCcEEEe
Q 042954 73 DGLAAWETLKCRPHSID-LVLTEVELPS---ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK---GAADFLI 145 (720)
Q Consensus 73 sg~eAle~L~~~~~~pD-LVLlDv~MP~---~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~---GA~dYL~ 145 (720)
+..+.++.+.. ..+| |+++++.-.+ .-.++++++|++.. ++|||...+-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 45565454544 3377 5556653211 12478999998753 6899999999999999999999 9998875
Q ss_pred ------CCCCHHHHHHH
Q 042954 146 ------KPVRRNELRNL 156 (720)
Q Consensus 146 ------KP~~~~eL~~~ 156 (720)
.|++..+++..
T Consensus 222 G~al~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 222 GKALYAKAFTLEEALEA 238 (244)
T ss_dssp CHHHHTTSSCHHHHHHH
T ss_pred eHHHHcCCCCHHHHHHH
Confidence 34555554443
No 322
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.84 E-value=45 Score=32.44 Aligned_cols=70 Identities=13% Similarity=0.006 Sum_probs=48.9
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccCCCC--------CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCc
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVELPSI--------SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA 141 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~--------dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~ 141 (720)
.+.+.+|+.... ...|.|+++-..|.. -|++.++++++... ..+|||.+-+-. .+.+.++++.||+
T Consensus 94 s~~t~~e~~~A~----~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~-~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK----HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKI-IDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG----GGSSEEEECCCC---------CCCCHHHHHHHHHTTC-SSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh----hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcC-CCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 477888876543 238999987765422 37888888876410 368999877665 6788899999998
Q ss_pred EEEe
Q 042954 142 DFLI 145 (720)
Q Consensus 142 dYL~ 145 (720)
++-+
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 323
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=33.71 E-value=1.2e+02 Score=31.83 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=61.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHH-HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLA-AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A~sg~e-Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
.++||.||---..-+......|... +++|+.+.+... ..+ .... .+ -+..| ++.+-.. ++
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~-~~-~~~~~-----------~~~ll~~---~~ 67 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--RDLP-DV-TVIAS-----------PEAAVQH---PD 67 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--HHCT-TS-EEESC-----------HHHHHTC---TT
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hhCC-CC-cEECC-----------HHHHhcC---CC
Confidence 3579999998665555455556554 788876443322 222 1111 11 11212 2223222 23
Q ss_pred CeEEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+=+|+++.. ...+.+..|+++|..=|+.||+ +.++....+..+-+..
T Consensus 68 ~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g 118 (364)
T 3e82_A 68 VDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQ 118 (364)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence 334444333 3467888999999999999994 6777777777665443
No 324
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=33.44 E-value=2.3e+02 Score=29.49 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=66.9
Q ss_pred cEEEEEe----cCHHHHHHHHHHHHhC-CCEEE-E-ECCHHHHHHHHHcCCCCceEEEEeccCCC------------CC-
Q 042954 42 LRVLLVE----ADDSTRQIISALLRKC-GYRVA-A-VPDGLAAWETLKCRPHSIDLVLTEVELPS------------IS- 101 (720)
Q Consensus 42 ~rVLIVD----Dd~~~r~~L~~lL~~~-gyeV~-~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~------------~d- 101 (720)
..++.++ +.....+.++.+-+.. +.-|. . +.+.++|..+++. ..|.|++--. ++ ..
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCch
Confidence 3455555 4556667777766665 34333 3 6788888887764 3788887321 11 11
Q ss_pred -HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 102 -GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 102 -GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
-++++.++++.. ++|||.-.+-.+...+.+|+..||+....
T Consensus 197 ~~~~~l~~v~~~~---~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 197 WQLAALRWCAKAA---SKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp CHHHHHHHHHHTC---SSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 367788887653 79999999999999999999999987754
No 325
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=33.37 E-value=1.9e+02 Score=28.41 Aligned_cols=69 Identities=9% Similarity=0.198 Sum_probs=48.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcC---CCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAA-VPDGLAAWETLKCR---PHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~-A~sg~eAle~L~~~---~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+|..||-++......++.++..|+ .|.. ..+..+.+..+... ...||+|++|.... +-..+++.+...
T Consensus 105 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~ 179 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLIDL 179 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHHh
Confidence 5899999999999999999988775 3433 67777776655311 24599999997533 334666666554
No 326
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=33.23 E-value=2.2e+02 Score=30.38 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCEE--EEECCHHHHHHHHHcCCCCceEEEEecc----CC-CCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 55 QIISALLRKCGYRV--AAVPDGLAAWETLKCRPHSIDLVLTEVE----LP-SISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 55 ~~L~~lL~~~gyeV--~~A~sg~eAle~L~~~~~~pDLVLlDv~----MP-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
+.++.+-+..+..| -.+.+.++|..+.+. .+|.|++.-. +. +...+++|.+|++.- ...+|||+-.+-.
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-~~~ipVia~GGI~ 282 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAV-KGKIEVYMDGGVR 282 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH-TTSSEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHh-CCCCeEEEECCCC
Confidence 34555444445433 347888888877653 4888887432 11 234578888887643 1469999999999
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
+...+.+++..||+....-
T Consensus 283 ~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 283 TGTDVLKALALGARCIFLG 301 (352)
T ss_dssp SHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 9999999999999988764
No 327
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=33.13 E-value=93 Score=31.68 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=51.0
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeccC------CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEE
Q 042954 70 AVPDGLAAWETLKCRPHSIDLVLTEVEL------PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADF 143 (720)
Q Consensus 70 ~A~sg~eAle~L~~~~~~pDLVLlDv~M------P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY 143 (720)
..-+.++..+++.. .|++|+-... ++.-|..+++.+.. .+|||+ |.... ..+.+..| .++
T Consensus 259 g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~-----G~PvI~-~~~~~---~~e~i~~~-~g~ 324 (394)
T 3okp_A 259 GRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQAC-----GVPVIA-GTSGG---APETVTPA-TGL 324 (394)
T ss_dssp ESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHHT-----TCCEEE-CSSTT---GGGGCCTT-TEE
T ss_pred CCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHHc-----CCCEEE-eCCCC---hHHHHhcC-Cce
Confidence 33344666666643 5777764443 13446677777743 467775 43332 23445667 899
Q ss_pred EeCCCCHHHHHHHHHHHHh
Q 042954 144 LIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 144 L~KP~~~~eL~~~l~~vlr 162 (720)
+..|-+.++|..+|..++.
T Consensus 325 ~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 325 VVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp ECCTTCHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 9999999999999998876
No 328
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=33.07 E-value=1.7e+02 Score=31.24 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=61.2
Q ss_pred ccEEEEEecCH---HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 41 VLRVLLVEADD---STRQIISALLRKCGYRVAA-VP--DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 41 ~~rVLIVDDd~---~~r~~L~~lL~~~gyeV~~-A~--sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
++||.||---. .-..-+..+....+++++. +. +.+.|.+..+......+-+.. +--+++..-+...
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~-------~~~~ll~~~~~~~- 108 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYS-------DFKEMAIREAKLK- 108 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCS-------CHHHHHHHHHHCT-
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccC-------CHHHHHhcccccC-
Confidence 57999999776 3233333333334588764 43 344444443321100001111 2234444432211
Q ss_pred CCCCeEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 115 CKNIPVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 115 ~p~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+++=+|+++.. .-.+.+..|+++|..=|+-|| .+.++...++..+-+..
T Consensus 109 -~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 161 (417)
T 3v5n_A 109 -NGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESD 161 (417)
T ss_dssp -TCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCS
T ss_pred -CCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcC
Confidence 23334444333 346788899999999999999 56778877777665443
No 329
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=32.73 E-value=2e+02 Score=30.82 Aligned_cols=66 Identities=8% Similarity=0.003 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.++.+.+ ..+|+|.+|..-... .-++.+++|++.. ++++||+-+ -...+.+.+++++||+...+
T Consensus 110 ~~~~~~lie--aGvd~I~idta~G~~~~~~~~I~~ik~~~--p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVE--AGVDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTTSHHHHHHHHHHHHHC--TTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHhc--CCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 444555544 348999998743222 2357788888875 678877632 34578888999999987776
No 330
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=32.69 E-value=1.7e+02 Score=27.62 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=47.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHcCC--CCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVA-AVPDGLAAWETLKCRP--HSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~-~A~sg~eAle~L~~~~--~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+|..||-++......++.++..|+ .+. ...+..+.+..+.... ..||+|++|... .+-..+++.+...
T Consensus 95 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~--~~~~~~l~~~~~~ 168 (229)
T 2avd_A 95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADK--ENCSAYYERCLQL 168 (229)
T ss_dssp CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCS--TTHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCH--HHHHHHHHHHHHH
Confidence 5899999999999999999987764 233 3567777665553211 349999998642 2234556666544
No 331
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=32.68 E-value=1.7e+02 Score=25.82 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=46.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc--CCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKC--RPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~--~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++|.+|-| +.+..++ +-.|+++..+.+.+++.+.++. ...++.|||+.-.+-.. --+.+..++.. ...|
T Consensus 4 mkiaVIgD-~dtv~GF----rLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~---~~~P 74 (109)
T 2d00_A 4 VRMAVIAD-PETAQGF----RLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRG---RDLP 74 (109)
T ss_dssp CCEEEEEC-HHHHHHH----HHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTC---CCCC
T ss_pred cEEEEEeC-HHHHHHH----HHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhC---CCCe
Confidence 58889998 5555444 4458888888888877655542 11359999998776542 23455666533 2356
Q ss_pred EEEEe
Q 042954 120 VIMMS 124 (720)
Q Consensus 120 VIvLT 124 (720)
+|+.-
T Consensus 75 ~Il~I 79 (109)
T 2d00_A 75 VLLPI 79 (109)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66553
No 332
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=32.62 E-value=70 Score=33.07 Aligned_cols=112 Identities=12% Similarity=0.031 Sum_probs=62.4
Q ss_pred ccEEEEEec-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceE-EEEeccCCCCCHHHHHH---HHHh-ccC
Q 042954 41 VLRVLLVEA-DDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDL-VLTEVELPSISGFALLT---LVME-HDV 114 (720)
Q Consensus 41 ~~rVLIVDD-d~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDL-VLlDv~MP~~dGieLL~---~Ir~-~~~ 114 (720)
|+||.||-- -..-...+ ..|...+.+++.+.+.......+... .+.. +..|+ -++++ .|++ ..
T Consensus 3 mirvgiIG~gG~i~~~h~-~~l~~~~~~lvav~d~~~~~~~~~~~--~~~~~~~~~~-------~~ll~~~~~l~~~~~- 71 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHM-RAIKDTGNCLVSAYDINDSVGIIDSI--SPQSEFFTEF-------EFFLDHASNLKRDSA- 71 (318)
T ss_dssp CCEEEEETTTSSSHHHHH-HHHHHTTCEEEEEECSSCCCGGGGGT--CTTCEEESSH-------HHHHHHHHHHTTSTT-
T ss_pred ceEEEEECCCcHHHHHHH-HHHHhCCCEEEEEEcCCHHHHHHHhh--CCCCcEECCH-------HHHHHhhhhhhhccC-
Confidence 578999887 33333333 34444578877755443322222221 1121 12221 23442 3322 12
Q ss_pred CCCCeEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 115 CKNIPVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 115 ~p~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+++=+|+++.. ...+.+.+|+++|.+=|+-|| .+.++....+..+-+..
T Consensus 72 -~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 124 (318)
T 3oa2_A 72 -TALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETD 124 (318)
T ss_dssp -TSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHT
T ss_pred -CCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 34545555443 346788999999999999999 66788887777665544
No 333
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=32.45 E-value=3.1e+02 Score=29.99 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeccC---------C--CCCHHHHHHHHHhccCCCC
Q 042954 52 STRQIISALLRKC-GYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVEL---------P--SISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 52 ~~r~~L~~lL~~~-gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~M---------P--~~dGieLL~~Ir~~~~~p~ 117 (720)
...+.++.+-+.. ++.|. ...+.++|..+.+. .+|.|.+...- . +...++++..+.+.....+
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 340 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYD 340 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcC
Confidence 4555566555555 45443 37778888666543 37888874321 0 1233555555554321236
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+|||.-.+-.+...+.+++..||+....
T Consensus 341 ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 341 VPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 8999999999999999999999987764
No 334
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=32.30 E-value=1.7e+02 Score=28.52 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=48.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHcC---CCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVA-AVPDGLAAWETLKCR---PHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~-~A~sg~eAle~L~~~---~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+|..||-++...+..++.++..|+ .|. ...+..+.+..+... ...||+|++|...+ +-.++++.+...
T Consensus 96 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~~ 170 (237)
T 3c3y_A 96 GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMKL 170 (237)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHHh
Confidence 5899999999999999999988876 243 367787776655311 24599999996432 234566666544
No 335
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=32.25 E-value=2.2e+02 Score=28.31 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=26.3
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAV 71 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A 71 (720)
|+++|||.--.-.+-..|.+.|...|++|..+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 32 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIIL 32 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 56799999999998888888888888988764
No 336
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=32.22 E-value=1.2e+02 Score=26.90 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=44.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|.-||-++...+..+..+...+..+.. ..+..+.+..+......||+|+++.... .+--++++.+.
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 45999999999999998888766543333 4566665544433223599999996443 33346666665
No 337
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=32.14 E-value=1.9e+02 Score=28.27 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=51.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR--VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye--V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.+|..||-++......++.++..|+. |.. ..+..+.+..+. ....||+|++|...+ +-..+++.+...- .|.-
T Consensus 89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~~~~L-kpGG 164 (248)
T 3tfw_A 89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWALRYS-RPGT 164 (248)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHHHHTC-CTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHHHHhc-CCCe
Confidence 58999999999999999999887653 433 667766555432 113699999997432 2345677766543 2443
Q ss_pred eEEEEe
Q 042954 119 PVIMMS 124 (720)
Q Consensus 119 pVIvLT 124 (720)
+|++.
T Consensus 165 -~lv~~ 169 (248)
T 3tfw_A 165 -LIIGD 169 (248)
T ss_dssp -EEEEE
T ss_pred -EEEEe
Confidence 55543
No 338
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=32.03 E-value=52 Score=31.55 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=45.4
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHcC--CCCceEEEEeccCCCC-CHHHHHHHH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR--VA-AVPDGLAAWETLKCR--PHSIDLVLTEVELPSI-SGFALLTLV 109 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye--V~-~A~sg~eAle~L~~~--~~~pDLVLlDv~MP~~-dGieLL~~I 109 (720)
..+|.-||-++...+..++.++..++. |. ...+..+.+..+... ...||+|++|...... +-+++++.+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~ 157 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC 157 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc
Confidence 358999999999999999998877642 43 366776665544310 0359999999754432 222344444
No 339
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=32.02 E-value=2.2e+02 Score=30.20 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=27.7
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
-.+|+|++-...+.. +.++.| ..+++.+ +.++|...+..++.
T Consensus 319 ~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 319 MGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp TTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 467888763323222 235667 5677776 88999988888765
No 340
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=31.95 E-value=1.1e+02 Score=31.93 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCCeEEE
Q 042954 51 DSTRQIISALLRKC-GYRVAA------VPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 51 ~~~r~~L~~lL~~~-gyeV~~------A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
..-...++++++.. ++.|+. +.+..+|++.|.. ..+|-||+-=.-| -.+|+++|+++.+... ..++|++
T Consensus 138 ~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~--lGvdrILTSG~~~~a~~Gl~~Lk~Lv~~a~-~rI~Ima 214 (287)
T 3iwp_A 138 HIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT--LGFERVLTSGCDSSALEGLPLIKRLIEQAK-GRIVVMP 214 (287)
T ss_dssp CBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH--HTCSEEEECTTSSSTTTTHHHHHHHHHHHT-TSSEEEE
T ss_pred CcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH--cCCCEEECCCCCCChHHhHHHHHHHHHHhC-CCCEEEE
Confidence 34445556666543 355554 3468999999987 3599999966544 4689999999987642 2344443
Q ss_pred EeccCCHHHHHHHHH-cCCcEEEe
Q 042954 123 MSLHDSISMVLKCML-KGAADFLI 145 (720)
Q Consensus 123 LTs~~d~e~~~~Al~-~GA~dYL~ 145 (720)
-+--..+.+.+.++ .|+..|-.
T Consensus 215 -GGGV~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 215 -GGGITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp -CTTCCTTTHHHHHHHHCCSEEEE
T ss_pred -CCCcCHHHHHHHHHhhCCCEEeE
Confidence 33344555556554 88887764
No 341
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=31.88 E-value=1.4e+02 Score=31.02 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=60.9
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++||.||---..-.......|... +++|+.+.+..... ..+... ..-+..|+ +.+-+. +++=
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~--~~~~~~~~-----------~~ll~~---~~vD 67 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFP--DAEVVHEL-----------EEITND---PAIE 67 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCT--TSEEESST-----------HHHHTC---TTCC
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCC--CCceECCH-----------HHHhcC---CCCC
Confidence 579999988665554445555544 78887644333221 111111 11122222 222222 2343
Q ss_pred EEEEeccC--CHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 120 VIMMSLHD--SISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 120 VIvLTs~~--d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
+|+++... ..+.+..|+++|.+=|+-|| .+.++....+..+-+..
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g 116 (358)
T 3gdo_A 68 LVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKG 116 (358)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcC
Confidence 44443333 36788899999999999999 56778777777665543
No 342
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=31.63 E-value=72 Score=33.55 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=46.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCC-----CHHHHHHHHHhcc
Q 042954 42 LRVLLVEADDSTRQIISALLRKC-GYRVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSI-----SGFALLTLVMEHD 113 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~-gyeV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-----dGieLL~~Ir~~~ 113 (720)
.+|..||=++.+.+..++.+... .-.+. ...|+.+.+..+. ...||+||+|...+.. .-.++++.++...
T Consensus 114 ~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~L 190 (317)
T 3gjy_A 114 SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGL 190 (317)
T ss_dssp CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHE
T ss_pred cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCCCccccchhhhHHHHHHHHHHhc
Confidence 48999999999999988887532 11232 3667776554321 2459999999865532 1257777776654
No 343
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=31.50 E-value=1.2e+02 Score=29.70 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCCceEE-EEeccCCCC---CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc---CCcEEEeC
Q 042954 74 GLAAWETLKCRPHSIDLV-LTEVELPSI---SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK---GAADFLIK 146 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLV-LlDv~MP~~---dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~---GA~dYL~K 146 (720)
..+.++.+... .++.| +++..-.+. -.++++++|++. .++|||...+-.+.+.+.++++. ||+.++.=
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG 225 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVG 225 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEc
Confidence 35555555442 36744 566543221 257899999864 47899999999988999999998 99887653
Q ss_pred ------CCCHHHHHH
Q 042954 147 ------PVRRNELRN 155 (720)
Q Consensus 147 ------P~~~~eL~~ 155 (720)
|+...+++.
T Consensus 226 ~al~~~~~~~~~~~~ 240 (244)
T 2y88_A 226 KALYARRFTLPQALA 240 (244)
T ss_dssp HHHHTTSSCHHHHHH
T ss_pred HHHHCCCcCHHHHHH
Confidence 555554443
No 344
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=31.39 E-value=2.5e+02 Score=28.30 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=54.7
Q ss_pred EEEEEecCHHHHHHHHHH-HHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccC
Q 042954 43 RVLLVEADDSTRQIISAL-LRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDV 114 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~l-L~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~ 114 (720)
.+++.++.......+... .+..|.+|+. ..|....+..++. ..+|+|++-. ...++..+++++++..
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~--~~~~~~~~~~~~~~~g- 220 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKG--KDFDAIVVPG--YYNEAGKIVNQARGMG- 220 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHT--SCCSEEECCS--CHHHHHHHHHHHHHTT-
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEec--CcHHHHHHHHHHHHcC-
Confidence 455566655444444444 4556766654 2355667777776 4599998643 3346778888888875
Q ss_pred CCCCeEEEEeccCCHHHHHHHH
Q 042954 115 CKNIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 115 ~p~ipVIvLTs~~d~e~~~~Al 136 (720)
-..+++...+.........+.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T 4gnr_A 221 -IDKPIVGGDGFNGEEFVQQAT 241 (353)
T ss_dssp -CCSCEEECGGGCSHHHHHHHC
T ss_pred -CCCcEEEecccccchhhhhhh
Confidence 466777766666666555543
No 345
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=31.22 E-value=61 Score=33.56 Aligned_cols=107 Identities=11% Similarity=0.209 Sum_probs=57.6
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCce-EEEEeccCCCCCHHHHHHHHHhc
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDG------LAAWETLKCRPHSID-LVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg------~eAle~L~~~~~~pD-LVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
||+||.||---......+..+ ..+++++.+.+. +.+.+.+++ ..++ -+..| =-++|. ..
T Consensus 1 M~~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~ll~---~~ 66 (337)
T 3ip3_A 1 MSLKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAISE--MNIKPKKYNN-------WWEMLE---KE 66 (337)
T ss_dssp -CEEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHT--TTCCCEECSS-------HHHHHH---HH
T ss_pred CceEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHH--cCCCCcccCC-------HHHHhc---CC
Confidence 678999998643333333333 456887764432 233333332 1121 12212 123332 11
Q ss_pred cCCCCCeEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 113 DVCKNIPVIMMSLHD--SISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~--d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
++=+|+++... -.+.+.+|+++|.+=|+-||+ +.++....++.+-+..
T Consensus 67 ----~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 118 (337)
T 3ip3_A 67 ----KPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVR 118 (337)
T ss_dssp ----CCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred ----CCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 22234443332 356788999999999999995 5667777777665443
No 346
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=31.21 E-value=84 Score=31.89 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=62.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHh-CCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRK-CGYRVAA-VP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~-A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++||.||---..-...+...|.. .+++++. ++ +.+.+.+..+... ... . .+--+++. . .+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~--~~~-~-------~~~~~ll~-----~--~D 68 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR--IMP-F-------DSIESLAK-----K--CD 68 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT--CCB-C-------SCHHHHHT-----T--CS
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCC-c-------CCHHHHHh-----c--CC
Confidence 57999999876665545555554 4788875 44 3333333333211 111 1 12223332 2 34
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+-+|........+.+..|++.|..=|+.||+ +.++....+..+-+..
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g 117 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKN 117 (308)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 4333333334467788999999999999995 6778877777665543
No 347
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.18 E-value=1.3e+02 Score=29.48 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPDG------LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg------~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+.+.++..||.+..+... .+.++.+.. ..+|-||+--.. .+ -++++.+++. .+|||++..
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~--~~-~~~~~~l~~~----~iPvV~~~~ 100 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG--RQIGGIILLYSR--EN-DRIIQYLHEQ----NFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT--TCCCEEEESCCB--TT-CHHHHHHHHT----TCCEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCC--CC-hHHHHHHHHC----CCCEEEECC
Confidence 35566777788889998875432 223455544 348988873211 11 2567777653 589998865
Q ss_pred cC
Q 042954 126 HD 127 (720)
Q Consensus 126 ~~ 127 (720)
..
T Consensus 101 ~~ 102 (292)
T 3k4h_A 101 PY 102 (292)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 348
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=31.00 E-value=2.2e+02 Score=29.47 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=59.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA-VP-DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
++||.||---..-+..+..+....+++++. ++ +.+.+.++.+.....+...+.+ + ++.+-.. +++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~----~~~ll~~---~~~ 72 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S----YESLLED---PEI 72 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S----HHHHHHC---TTC
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C----HHHHhcC---CCC
Confidence 479999987555444455444444687765 33 3333433333311000111111 1 2222222 223
Q ss_pred eEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
-+|+++.. ...+.+..|+++|.+=|+.|| .+.++....+..+-+..
T Consensus 73 D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g 122 (362)
T 1ydw_A 73 DALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANG 122 (362)
T ss_dssp CEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTT
T ss_pred CEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcC
Confidence 34444333 345778899999999999999 46777777766655443
No 349
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=30.98 E-value=74 Score=33.44 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=58.0
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR----------VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye----------V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
.+++||-+.+.-...|.++++..|.. |.......+...++.. .||+++--..-+.-|.-+++.+.
T Consensus 226 ~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e~gg~~~lEAmA- 300 (374)
T 2xci_A 226 LKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVNIGGHNLLEPTC- 300 (374)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSSSCCCCCHHHHT-
T ss_pred cEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccCCCCcCHHHHHH-
Confidence 56777766655444566666655543 2222222333344432 67766522121222344555553
Q ss_pred ccCCCCCeEEEEeccCCHHHHHH-HHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLK-CMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~-Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
-.+|||.-+...+...+.+ ....| ++..+-+.++|...|..++..
T Consensus 301 ----~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 301 ----WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp ----TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred ----hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 3578885222233333333 23444 566667899999999998875
No 350
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=30.93 E-value=1.1e+02 Score=30.99 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=46.5
Q ss_pred EEEEEe-cCHH---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHh
Q 042954 43 RVLLVE-ADDS---TRQIISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVME 111 (720)
Q Consensus 43 rVLIVD-Dd~~---~r~~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~ 111 (720)
+|.||. |+.. ..+.+++.|+..|.+|+. ..+....+..++. ..+|+||+... +.+...+++.+++
T Consensus 161 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~--~~~dav~~~~~--~~~a~~~~~~~~~ 236 (386)
T 3sg0_A 161 KVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIA--TKPDAVFIASA--GTPAVLPQKALRE 236 (386)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHH--TCCSEEEEECC--SGGGHHHHHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHh--cCCCEEEEecC--cchHHHHHHHHHH
Confidence 555554 3332 344566666666766531 1344555666655 34788877542 3456777888877
Q ss_pred ccCCCCCeEEEEeccCCHHH
Q 042954 112 HDVCKNIPVIMMSLHDSISM 131 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~ 131 (720)
.. -..|+|...+..+.+.
T Consensus 237 ~g--~~~~~~~~~~~~~~~~ 254 (386)
T 3sg0_A 237 RG--FKGAIYQTHGVATEEF 254 (386)
T ss_dssp TT--CCSEEECCGGGCSHHH
T ss_pred cC--CCCcEEeccccCCHHH
Confidence 65 3456655555555443
No 351
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=30.89 E-value=1.9e+02 Score=27.29 Aligned_cols=70 Identities=9% Similarity=0.122 Sum_probs=48.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCC--CCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR--VAA-VPDGLAAWETLKCRP--HSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye--V~~-A~sg~eAle~L~~~~--~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
..+|..||-++......++.++..++. |.. ..+..+.+..+.... ..||+|++|...+ +-..+++.+...
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~--~~~~~l~~~~~~ 163 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA--NTDLYYEESLKL 163 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG--GHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH--HHHHHHHHHHHh
Confidence 368999999999999999999887642 433 677777766554210 3599999987422 234556666544
No 352
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.80 E-value=4e+02 Score=26.30 Aligned_cols=121 Identities=7% Similarity=0.098 Sum_probs=72.3
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCC--CEEEEE-CCHHHHHHHHHcC-C-CCceEEEEe----------ccCC----CCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCG--YRVAAV-PDGLAAWETLKCR-P-HSIDLVLTE----------VELP----SIS 101 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~g--yeV~~A-~sg~eAle~L~~~-~-~~pDLVLlD----------v~MP----~~d 101 (720)
|.+|+++-..+.+...++.++...+ .++... .+.++++...+.. . ..+|+||.- +..| ..+
T Consensus 12 m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 12 DKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp -CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSCEEEECCC
T ss_pred CCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCCEEEecCC
Confidence 4578888888888888888887654 355443 4567777665431 1 248888842 2344 468
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeccCC---HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 102 GFALLTLVMEHDVCKNIPVIMMSLHDS---ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 102 GieLL~~Ir~~~~~p~ipVIvLTs~~d---~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
|+++++.|....... -.|-+++-..- ...+.+.+...+.-|.. .+.+++...|+.+.+..
T Consensus 92 ~~Dil~aL~~a~~~~-~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~--~~~ee~~~~i~~l~~~G 154 (225)
T 2pju_A 92 GYDVLQFLAKAGKLT-SSIGVVTYQETIPALVAFQKTFNLRLDQRSY--ITEEDARGQINELKANG 154 (225)
T ss_dssp HHHHHHHHHHTTCTT-SCEEEEEESSCCHHHHHHHHHHTCCEEEEEE--SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhC-CcEEEEeCchhhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHHHHCC
Confidence 888888887765432 24444443332 23344455554444443 45678888888776544
No 353
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=30.72 E-value=97 Score=31.20 Aligned_cols=57 Identities=18% Similarity=0.018 Sum_probs=38.8
Q ss_pred ccEEEEEecC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHHHc
Q 042954 41 VLRVLLVEAD--------------------DSTRQIISALLRKCGYRVAAVPDGL-----------------AAWETLKC 83 (720)
Q Consensus 41 ~~rVLIVDDd--------------------~~~r~~L~~lL~~~gyeV~~A~sg~-----------------eAle~L~~ 83 (720)
|+|||+|-.. ......+...|.+.|++|..+.... ...++++.
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 4799999877 2344556777777899988765332 45566665
Q ss_pred CCCCceEEEEeccCCC
Q 042954 84 RPHSIDLVLTEVELPS 99 (720)
Q Consensus 84 ~~~~pDLVLlDv~MP~ 99 (720)
..||||++-...+.
T Consensus 83 --~~~Dvi~~~~~~~~ 96 (342)
T 2iuy_A 83 --ADVDVVHDHSGGVI 96 (342)
T ss_dssp --CCCSEEEECSSSSS
T ss_pred --cCCCEEEECCchhh
Confidence 35999998765543
No 354
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=30.72 E-value=2.3e+02 Score=29.73 Aligned_cols=91 Identities=9% Similarity=0.069 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEE-----EC------CHHHHHHHHHcCCCCceEEEEeccCC--CCC----------HHHHH
Q 042954 50 DDSTRQIISALLRKCGYRVAA-----VP------DGLAAWETLKCRPHSIDLVLTEVELP--SIS----------GFALL 106 (720)
Q Consensus 50 d~~~r~~L~~lL~~~gyeV~~-----A~------sg~eAle~L~~~~~~pDLVLlDv~MP--~~d----------GieLL 106 (720)
...+.++++.+-+..++.|.. .. +..+..+.+.+ ..+|.|++.-+.. +.+ .++++
T Consensus 111 ~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~--aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i 188 (350)
T 3b0p_A 111 LARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAE--AGVKVFVVHARSALLALSTKANREIPPLRHDWV 188 (350)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHH--TTCCEEEEECSCBC----------CCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHH--cCCCEEEEecCchhcccCcccccCCCcccHHHH
Confidence 344555555555545554443 11 12333445544 3378777654321 111 36889
Q ss_pred HHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 107 TLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
+.|++.. +++|||+--+-.+.+.+.+++. ||+....
T Consensus 189 ~~ik~~~--~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 189 HRLKGDF--PQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHHC--TTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHHhC--CCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 9998764 5899998888889999999998 9877654
No 355
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=30.56 E-value=1.5e+02 Score=29.80 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHHHhC-CCEEEE------E--CCHHHHHHHHHcCCCCceEEEEeccCC---CCCHHHHHHHHHhccCCC
Q 042954 49 ADDSTRQIISALLRKC-GYRVAA------V--PDGLAAWETLKCRPHSIDLVLTEVELP---SISGFALLTLVMEHDVCK 116 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~-gyeV~~------A--~sg~eAle~L~~~~~~pDLVLlDv~MP---~~dGieLL~~Ir~~~~~p 116 (720)
|...-...+++++... +..|+. + .+..+|++.|... .++=||+-=.-+ -.+|+++|+++.+.. .
T Consensus 101 dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~l--Gv~rILTSG~~~~~~a~~g~~~L~~Lv~~a--~ 176 (224)
T 2bdq_A 101 NNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVAL--GFTRILLHGSSNGEPIIENIKHIKALVEYA--N 176 (224)
T ss_dssp TSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHT--TCCEEEECSCSSCCCGGGGHHHHHHHHHHH--T
T ss_pred CCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHc--CCCEEECCCCCCCCcHHHHHHHHHHHHHhh--C
Confidence 3334455666666543 566665 4 7889999999874 599999865444 478999999997754 2
Q ss_pred CCeEEEEeccCCHHHHHHHH-HcCCcEEEeC
Q 042954 117 NIPVIMMSLHDSISMVLKCM-LKGAADFLIK 146 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al-~~GA~dYL~K 146 (720)
.-..||.-+--..+.+.+.+ ..|+..|-..
T Consensus 177 ~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 177 NRIEIMVGGGVTAENYQYICQETGVKQAHGT 207 (224)
T ss_dssp TSSEEEECSSCCTTTHHHHHHHHTCCEEEET
T ss_pred CCeEEEeCCCCCHHHHHHHHHhhCCCEEccc
Confidence 22344444444455555555 5788877543
No 356
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=30.52 E-value=98 Score=32.20 Aligned_cols=53 Identities=9% Similarity=0.037 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
+.++++|+.. +..+|.+-. .+.+.+.+|+++||+-.+...+++++|+..++.+
T Consensus 187 ~Av~~ar~~~--~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 187 KAVTKAKKLD--SNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp HHHHHHHHHC--TTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 6777887764 677877744 4568889999999999999999999999888764
No 357
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=30.42 E-value=2.6e+02 Score=27.73 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCCceEEEEeccCCCC-CH--HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe-----
Q 042954 74 GLAAWETLKCRPHSIDLVLTEVELPSI-SG--FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI----- 145 (720)
Q Consensus 74 g~eAle~L~~~~~~pDLVLlDv~MP~~-dG--ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~----- 145 (720)
..+.++.+... .--.+|++|+.--++ .| +++++.|.+.. +++|||.--+-.+.+.+.+. +.++.+.+.
T Consensus 153 ~~~~~~~~~~~-g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~--~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~ 228 (243)
T 4gj1_A 153 LMEVLDFYSNK-GLKHILCTDISKDGTMQGVNVRLYKLIHEIF--PNICIQASGGVASLKDLENL-KGICSGVIVGKALL 228 (243)
T ss_dssp HHHHHHHHHTT-TCCEEEEEETTC-----CCCHHHHHHHHHHC--TTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHH
T ss_pred HHHHHHHHhhc-CCcEEEeeeecccccccCCCHHHHHHHHHhc--CCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHH
Confidence 45555555442 224689999965432 23 68899998764 67999998888888887664 666777664
Q ss_pred -CCCCHHHHHHH
Q 042954 146 -KPVRRNELRNL 156 (720)
Q Consensus 146 -KP~~~~eL~~~ 156 (720)
.-++.+|++..
T Consensus 229 ~g~i~l~ea~~~ 240 (243)
T 4gj1_A 229 DGVFSVEEGIRC 240 (243)
T ss_dssp TTSSCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 33555555444
No 358
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=30.40 E-value=1.5e+02 Score=31.08 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 126 HDSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 126 ~~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
....+.+..|+++|.+=|+-||+ +.++....+..+-+..
T Consensus 94 ~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~ 134 (383)
T 3oqb_A 94 QARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKG 134 (383)
T ss_dssp SSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 45578899999999999999995 6778877777665543
No 359
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=30.11 E-value=37 Score=32.55 Aligned_cols=34 Identities=21% Similarity=0.052 Sum_probs=24.3
Q ss_pred CccEEEEEecCHHHH-HHHHHHHHhCCCEEEEECC
Q 042954 40 MVLRVLLVEADDSTR-QIISALLRKCGYRVAAVPD 73 (720)
Q Consensus 40 m~~rVLIVDDd~~~r-~~L~~lL~~~gyeV~~A~s 73 (720)
||++|+|++.+.... ..+...|+..|+++..+..
T Consensus 1 m~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~ 35 (213)
T 3d54_D 1 MKPRACVVVYPGSNCDRDAYHALEINGFEPSYVGL 35 (213)
T ss_dssp CCCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECT
T ss_pred CCcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEec
Confidence 578999998776542 3457777777887777653
No 360
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=30.02 E-value=1.7e+02 Score=28.12 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=47.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHcC------------C-CCceEEEEeccCCCCCHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR--VA-AVPDGLAAWETLKCR------------P-HSIDLVLTEVELPSISGFAL 105 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye--V~-~A~sg~eAle~L~~~------------~-~~pDLVLlDv~MP~~dGieL 105 (720)
.+|..||-++...+..++.+...|+. |. ...+..+.+..+... . ..||+|++|...+. -..+
T Consensus 86 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~~~~ 163 (239)
T 2hnk_A 86 GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPNY 163 (239)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--HHHH
Confidence 58999999999999999999887652 33 366777766544221 1 35999999965432 2355
Q ss_pred HHHHHhc
Q 042954 106 LTLVMEH 112 (720)
Q Consensus 106 L~~Ir~~ 112 (720)
++.+...
T Consensus 164 l~~~~~~ 170 (239)
T 2hnk_A 164 YPLILKL 170 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 361
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.02 E-value=1.4e+02 Score=29.40 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD-----GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s-----g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||.+..+.. ..+.++.+.. ..+|-||+--..... +.++.+++. .+|||++-..
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~~---~~~~~l~~~----~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET--RRVDALIVAHTQPED---FRLQYLQKQ----NFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH--TCCSEEEECSCCSSC---HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc--CCCCEEEEeCCCCCh---HHHHHHHhC----CCCEEEECCC
Confidence 455667777888998876432 2345666665 348888774432221 667777653 5899988654
No 362
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.94 E-value=2.5e+02 Score=28.40 Aligned_cols=89 Identities=10% Similarity=-0.059 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccC-C--CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 53 TRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVEL-P--SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~M-P--~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
....+....+..|.++.. +.+.+|+...+.. ..+|+|-+..+- - ..| ++...++...- .+++++|.-++-.+
T Consensus 138 ~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l--~g~~iIGinnr~l~t~~~d-~~~~~~l~~~i-p~~~~vIaEsGI~t 213 (251)
T 1i4n_A 138 QIKEIYEAAEELGMDSLVEVHSREDLEKVFSV--IRPKIIGINTRDLDTFEIK-KNVLWELLPLV-PDDTVVVAESGIKD 213 (251)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT--CCCSEEEEECBCTTTCCBC-TTHHHHHGGGS-CTTSEEEEESCCCC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCCEEEEeCcccccCCCC-HHHHHHHHHhC-CCCCEEEEeCCCCC
Confidence 344444445567887766 8899998777652 047988776532 1 222 44555554432 14578888888888
Q ss_pred HHHHHHHHHcCCcEEEeC
Q 042954 129 ISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 129 ~e~~~~Al~~GA~dYL~K 146 (720)
.+.+.++.+. ++.+|+-
T Consensus 214 ~edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 214 PRELKDLRGK-VNAVLVG 230 (251)
T ss_dssp GGGHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHHh-CCEEEEc
Confidence 9999999999 9999875
No 363
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.93 E-value=72 Score=32.83 Aligned_cols=91 Identities=5% Similarity=-0.046 Sum_probs=43.1
Q ss_pred ccEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH--HHHHHHHhccC-
Q 042954 41 VLRVLLVEADDS---TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF--ALLTLVMEHDV- 114 (720)
Q Consensus 41 ~~rVLIVDDd~~---~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi--eLL~~Ir~~~~- 114 (720)
..+|++|+-|.. ..+.+..+.+..|..+....++.+....+... ..+|+||+| .++.+.. .++..+.....
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 458999988763 22233333333454443344444433333221 359999999 4544432 34444433221
Q ss_pred -CCCCeEEEEeccCCHHHHHH
Q 042954 115 -CKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 115 -~p~ipVIvLTs~~d~e~~~~ 134 (720)
.++-.++++.+......+.+
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHH
T ss_pred cCCCeEEEEEECCCCHHHHHH
Confidence 12223555533344444443
No 364
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=29.55 E-value=1.8e+02 Score=25.68 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=67.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC-
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI- 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i- 118 (720)
.++++|+-+.+. ...+..+++..+..|.. .-+..+..+++.. .|++|+-... +.-|+-+++.+.. .+
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~Eama~-----G~v 100 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAANV-ESEAIACLEAISV-----GIV 100 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCCS-CCCCHHHHHHHHT-----TCC
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCcc-cCccHHHHHHHhc-----CCC
Confidence 468888887554 46677777776665544 2235666677643 7888875543 3446777777743 45
Q ss_pred eEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 119 PVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 119 pVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
|||..+...... +.+..+. ++..+-+.++|...|..++..
T Consensus 101 Pvi~~~~~~~~~---~~~~~~~--~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 101 PVIANSPLSATR---QFALDER--SLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp EEEECCTTCGGG---GGCSSGG--GEECTTCHHHHHHHHHHHHHC
T ss_pred cEEeeCCCCchh---hhccCCc--eEEcCCCHHHHHHHHHHHHhC
Confidence 888733222221 2222332 377889999999999998763
No 365
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=29.54 E-value=1.3e+02 Score=30.77 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.++++++|+. .++||++=.+-.+.+.+.++ .||+..++-.
T Consensus 191 ~~~v~~vr~~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 191 KDLVRRIKAR---TALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp HHHHHHHHTT---CCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHHHHhh---cCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 4788999875 37899988888889988885 9999998753
No 366
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=29.46 E-value=2.5e+02 Score=27.06 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=47.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHcCC--CCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVA-AVPDGLAAWETLKCRP--HSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~-~A~sg~eAle~L~~~~--~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+|..||-++......++.++..|+ .|. ...+..+.+..+.... ..||+|++|... .+-..+++.+...
T Consensus 98 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~ 171 (232)
T 3cbg_A 98 GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLNL 171 (232)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHHH
Confidence 5899999999999999998877664 233 3677777766554321 359999999652 2234566666544
No 367
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=29.22 E-value=3e+02 Score=28.41 Aligned_cols=90 Identities=17% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhCCCE---EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 44 VLLVEADDST----RQIISALLRKCGYR---VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 44 VLIVDDd~~~----r~~L~~lL~~~gye---V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
+||.||+-.+ ...++.+-+..+.. .+.+.+.+|+.+.+.... |+|.+|- ++--++-+.++... .
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aGa---D~I~ld~----~~~~~~k~av~~v~--~ 239 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAGA---DLILLDN----FPLEALREAVRRVG--G 239 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHTC---SEEEEES----CCHHHHHHHHHHHT--T
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCC---CEEEECC----CCHHHHHHHHHHhC--C
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADF 143 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dY 143 (720)
.+|+++ ++--+.+.+.+....|++.+
T Consensus 240 ~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 240 RVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp SSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred CCeEEE-EcCCCHHHHHHHHHcCCCEE
No 368
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=29.20 E-value=75 Score=32.20 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=36.6
Q ss_pred ceEEEEeccCCCCCH-------HHHHHHHHhccC--CCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 88 IDLVLTEVELPSISG-------FALLTLVMEHDV--CKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 88 pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~--~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+|+|++=-.-|+..| ++-++++|+... ..+++ |.+.+--+.+.+.++.++||+-++.-
T Consensus 157 vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 157 IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp CSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCE-EEEESSCCTTTHHHHHTTTCCEEEES
T ss_pred CCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCee-EEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 687776555676655 455556655321 13444 44566666788999999999998764
No 369
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.12 E-value=1.2e+02 Score=31.59 Aligned_cols=58 Identities=9% Similarity=-0.111 Sum_probs=47.5
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
..||.+|..- ..-..+++++|++.- ...+||++=-+-.+.+.+.+++++||+..++-.
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 6899999754 333469999998863 127899999899999999999999999998876
No 370
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=28.73 E-value=29 Score=38.45 Aligned_cols=48 Identities=2% Similarity=-0.118 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCC--Ccc---chhhhHHHHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLKCRSASNT--CST---DMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl--~~~---~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
-.|+.-|+.+++.+++.+ +. .+. .....+....+..||++||||..-+
T Consensus 64 ~~Hsl~v~~ia~~~~~~l-~~~~~~~~~~~~~~~~~~~~v~~a~L~HDiGH~PF 116 (451)
T 2pgs_A 64 LTHSLEVSCVGRSLGMRV-GETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPF 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHTGGGSCTTCCHHHHHHHHHHHHHHTTTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhccccccccchhHHHHHHHHHHHhhccCCCCc
Confidence 458888999999888777 32 111 0111223347899999999999754
No 371
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=28.56 E-value=1.7e+02 Score=30.88 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=58.4
Q ss_pred EEEEEecCHHHH----HHHHHHHHhCCC-E-EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTR----QIISALLRKCGY-R-VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r----~~L~~lL~~~gy-e-V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
-|||-|.+-... ..++++-+..++ . .+.+.+.+++.+.++. ..|+|.+|-. + .+.++++.+.-. +
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~-~~~l~~av~~l~-~ 274 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----S-LEMMREAVKINA-G 274 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----C-HHHHHHHHHHHT-T
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----C-HHHHHHHHHHhC-C
Confidence 578877764433 333333233333 2 3458999999988874 3899999973 3 233444433321 3
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+ ..|..++--+.+.+.+....|++.|-
T Consensus 275 ~-v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 275 R-AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp S-SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred C-CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3 46668888899999888899996554
No 372
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=28.45 E-value=1.6e+02 Score=26.13 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=30.5
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
.++|+++++. .++++++|+.........+-..|...|+...
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 4788888764 4799999998876555555578888888653
No 373
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=28.34 E-value=86 Score=30.72 Aligned_cols=46 Identities=7% Similarity=0.081 Sum_probs=30.3
Q ss_pred CCceEEEEeccC-----CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHH
Q 042954 86 HSIDLVLTEVEL-----PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLK 134 (720)
Q Consensus 86 ~~pDLVLlDv~M-----P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~ 134 (720)
..+||||+|=.. --.+--++++.|...+ ..+ -||||+......+++
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~-~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQ-TVIITGRGCHRDILD 169 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTC-EEEEECSSCCHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCC-EEEEECCCCcHHHHH
Confidence 569999999642 2345567888898765 444 455777766555544
No 374
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=28.22 E-value=31 Score=34.63 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=35.3
Q ss_pred CccEEEEEecCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEec
Q 042954 40 MVLRVLLVEADDS--------TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 40 m~~rVLIVDDd~~--------~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv 95 (720)
|+++|+|+-+... ....+...|++.||+|..+......+..+.. ..+|+|+.-+
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~--~~~d~v~~~~ 62 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--MGFQKVFIAL 62 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTT--TTEEEEEECC
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhc--cCCCEEEEcC
Confidence 5678999987542 3346777788889999887654322333332 3589888654
No 375
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=28.22 E-value=1.9e+02 Score=31.14 Aligned_cols=116 Identities=9% Similarity=-0.016 Sum_probs=61.7
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHcC--CCC-ceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPD-GLAAWETLKCR--PHS-IDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~s-g~eAle~L~~~--~~~-pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
+++||.||---..-...+..+....+++++.+.+ -.+..+.+.+. ... ++.-+.+- ...+ ++.+-+.
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~----~~~ll~~--- 89 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD----YKNMLKD--- 89 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT----HHHHTTC---
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC----HHHHhcC---
Confidence 3589999987655555454444334788776433 23322322110 011 11222210 0011 2333222
Q ss_pred CCCeEEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+++-+|+++.. ...+.+.+|+++|.+=|+.||+ +.++...+++.+-+..
T Consensus 90 ~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g 142 (444)
T 2ixa_A 90 KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTG 142 (444)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence 23444444433 3467888999999999999995 5777777777664443
No 376
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=28.21 E-value=1.7e+02 Score=31.60 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeccC----C-CCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 55 QIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVEL----P-SISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~M----P-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
+.++.+-+..+..|+ .+.+.++|..+.+. .+|.|++.-.- . +..-++++.++++.-. ..+|||+-.+-.
T Consensus 242 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~-~~ipVia~GGI~ 317 (392)
T 2nzl_A 242 EDIKWLRRLTSLPIVAKGILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAVE-GKVEVFLDGGVR 317 (392)
T ss_dssp HHHHHHC--CCSCEEEEEECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHT-TSSEEEECSSCC
T ss_pred HHHHHHHHhhCCCEEEEecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcC-CCCEEEEECCCC
Confidence 334444444444333 36788888777653 38888884321 1 2345788888876531 369999999999
Q ss_pred CHHHHHHHHHcCCcEEEeC
Q 042954 128 SISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 128 d~e~~~~Al~~GA~dYL~K 146 (720)
+...+.+++..||+....=
T Consensus 318 ~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 318 KGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp SHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHhCCCeeEEC
Confidence 9999999999999887653
No 377
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=28.17 E-value=1.3e+02 Score=31.15 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=25.9
Q ss_pred CCccEEEEEecCH----HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc
Q 042954 39 RMVLRVLLVEADD----STRQIISALLRKCGYRVAAVPDGLAAWETLKC 83 (720)
Q Consensus 39 ~m~~rVLIVDDd~----~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~ 83 (720)
.++|||||+-... .-...|...|+..|++|..+.. ...+.+..
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~--~~~~~~~~ 64 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA--EHADRAAA 64 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES--SCHHHHHT
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc--chHHHHHh
Confidence 3456999986431 1223566777888999888655 33344443
No 378
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=28.15 E-value=42 Score=32.84 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=48.2
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeccCCC--CCHHHHHHHHHhccCCCCCeEEEEecc-CCHH-HHHHHHHcCCcEEEeC
Q 042954 71 VPDGLAAWETLKCRPHSIDLVLTEVELPS--ISGFALLTLVMEHDVCKNIPVIMMSLH-DSIS-MVLKCMLKGAADFLIK 146 (720)
Q Consensus 71 A~sg~eAle~L~~~~~~pDLVLlDv~MP~--~dGieLL~~Ir~~~~~p~ipVIvLTs~-~d~e-~~~~Al~~GA~dYL~K 146 (720)
+.+.++++++++.-....| ++++.+|- ..|.++++.||+.. ++.+|++..-. +..+ .+..+.++||+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~vd--~ie~g~~~~~~~G~~~i~~lr~~~--~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh 90 (218)
T 3jr2_A 15 QTNLTDAVAVASNVASYVD--VIEVGTILAFAEGMKAVSTLRHNH--PNHILVCDMKTTDGGAILSRMAFEAGADWITVS 90 (218)
T ss_dssp CSSHHHHHHHHHHHGGGCS--EEEECHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHHhcCCce--EEEeCcHHHHhcCHHHHHHHHHhC--CCCcEEEEEeecccHHHHHHHHHhcCCCEEEEe
Confidence 3455566665543211233 34554442 24788999998874 45677653322 2223 4566779999877777
Q ss_pred CCCHHH-HHHHHHHH
Q 042954 147 PVRRNE-LRNLWQHV 160 (720)
Q Consensus 147 P~~~~e-L~~~l~~v 160 (720)
.....+ +..+++.+
T Consensus 91 ~~~~~~~~~~~~~~~ 105 (218)
T 3jr2_A 91 AAAHIATIAACKKVA 105 (218)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 655433 45554444
No 379
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.15 E-value=95 Score=32.54 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=55.8
Q ss_pred EEEEEecCHHHH----HHHHHHHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTR----QIISALLRKCG-YRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r----~~L~~lL~~~g-yeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
-|||=|.+-... ..++++-+... ..+ +.+.+.+|+.+.++. ..|+|.+|-.-| +.++++.+.. .
T Consensus 180 ~vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~-----~~l~~av~~~--~ 249 (300)
T 3l0g_A 180 GVLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSI-----SEIKKAVDIV--N 249 (300)
T ss_dssp CEEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCH-----HHHHHHHHHH--T
T ss_pred eEEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHhh--c
Confidence 467777664443 33333322222 233 348999999999875 389999996333 2233222221 1
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.-..|..|+.-..+.+.+....|++-+-
T Consensus 250 ~~v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 250 GKSVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp TSSEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred CceEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 2346778888888888888888886443
No 380
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=28.08 E-value=1.2e+02 Score=31.56 Aligned_cols=73 Identities=27% Similarity=0.248 Sum_probs=0.0
Q ss_pred ccEEEEEecC----HHHHHHHHHHHHhCCCEEEEECCHH-----------------------------------------
Q 042954 41 VLRVLLVEAD----DSTRQIISALLRKCGYRVAAVPDGL----------------------------------------- 75 (720)
Q Consensus 41 ~~rVLIVDDd----~~~r~~L~~lL~~~gyeV~~A~sg~----------------------------------------- 75 (720)
+|||||+-.. ..-...|...|+..|++|..+....
T Consensus 15 ~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 4fzr_A 15 HMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEK 94 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHH
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchh
Q ss_pred -------------------HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 76 -------------------AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 76 -------------------eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
+..++++. ..||||+.|. ....|.-+.+.+ .+|+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVv~d~--~~~~~~~~a~~~-------giP~v~~~ 151 (398)
T 4fzr_A 95 PLLEHIGRGYGRLVLRMRDEALALAER--WKPDLVLTET--YSLTGPLVAATL-------GIPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEET--TCTHHHHHHHHH-------TCCEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEECc--cccHHHHHHHhh-------CCCEEEec
No 381
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=28.05 E-value=79 Score=29.78 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=63.1
Q ss_pred ccEEEEEecCH-----H-HHHHHHHHHHhCCCEEEE---E-----C-------C----HHHHHHHHHcCCCCceEEEEec
Q 042954 41 VLRVLLVEADD-----S-TRQIISALLRKCGYRVAA---V-----P-------D----GLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 41 ~~rVLIVDDd~-----~-~r~~L~~lL~~~gyeV~~---A-----~-------s----g~eAle~L~~~~~~pDLVLlDv 95 (720)
+++|.|.-.-- . ..+.+...|+..| +|.. + . + ...-+++|+. .|+||.++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vva~~ 85 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVVAEV 85 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEEEEC
Confidence 45777773222 2 4577888888888 7631 0 0 1 1222355544 79999988
Q ss_pred cCCC-CCHHHHHHHHHhccCCCCCeEEEEeccCC---HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 96 ELPS-ISGFALLTLVMEHDVCKNIPVIMMSLHDS---ISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 96 ~MP~-~dGieLL~~Ir~~~~~p~ipVIvLTs~~d---~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.-++ ..++|+--... ...|||++..... ..........+ ..|-...++.++|...|...++..
T Consensus 86 ~~~d~Gt~~EiGyA~a-----lgKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 86 TQPSLGVGYELGRAVA-----LGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp SSCCHHHHHHHHHHHH-----TCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHH-----CCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHhc
Confidence 6332 22345443332 3579999875542 11222222111 234444458889999988887754
No 382
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=28.01 E-value=3.5e+02 Score=28.83 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEecc----C----------------CCCCHHHHH
Q 042954 52 STRQIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTEVE----L----------------PSISGFALL 106 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlDv~----M----------------P~~dGieLL 106 (720)
.+.+.|+.+-+..+..|.. + .+.++|..+.+. .+|.|+++-. + -+...++.|
T Consensus 193 ~~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCBC--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCCCCcccchhhccccccccccccccccHHHHH
Confidence 3456666666665554444 3 577788777654 3788876432 0 023345666
Q ss_pred HHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 107 TLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
..++... ..+|||.-.+-.+...+.+|+.+||+....=
T Consensus 270 ~~v~~~~--~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 270 LNAQPLM--DKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHHGGGT--TTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHhc--CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6665543 5799999999999999999999999987654
No 383
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=27.90 E-value=1.3e+02 Score=31.45 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
+.++++|+.. +..+|.+-.. +.+.+.+|+++||+-.+...+++++++.+++.+
T Consensus 196 ~Av~~ar~~~--p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~ 248 (300)
T 3l0g_A 196 LAIQRLRKNL--KNEYIAIECD--NISQVEESLSNNVDMILLDNMSISEIKKAVDIV 248 (300)
T ss_dssp HHHHHHHHHS--SSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh
Confidence 6677777764 6778887654 468889999999999999999999999998764
No 384
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=27.83 E-value=1e+02 Score=31.01 Aligned_cols=60 Identities=8% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc-CCHHHHHHHHHcCCcEEEe
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH-DSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~-~d~e~~~~Al~~GA~dYL~ 145 (720)
.++++.+.+.. .|+|.+-+ --+++--.+++.+++... .++|||+|+.+ ... ..|++++|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~-S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISG-TQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECC-CTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC-CCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 385
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=27.78 E-value=1.9e+02 Score=29.12 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=46.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC-------CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCC--H---HHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC-------GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSIS--G---FALLTLV 109 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~-------gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d--G---ieLL~~I 109 (720)
.+|..||-++.+.+..++.+... ..++ ...|+.+.+... ...||+||+|...|... + .++++.+
T Consensus 103 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~-~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~ 178 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNV-FIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKI 178 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEE-EESCHHHHHHHC---CSCEEEEEEECCCTTTGGGGGSSHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEE-EECChHHHHHhC---CCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 58999999999999988887542 1233 366776655432 24699999998655322 2 4777777
Q ss_pred Hhcc
Q 042954 110 MEHD 113 (720)
Q Consensus 110 r~~~ 113 (720)
++..
T Consensus 179 ~~~L 182 (283)
T 2i7c_A 179 YNAL 182 (283)
T ss_dssp HHHE
T ss_pred HHhc
Confidence 6654
No 386
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=27.74 E-value=1.3e+02 Score=29.63 Aligned_cols=68 Identities=15% Similarity=-0.012 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCEEEEEC-----CHH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 53 TRQIISALLRKCGYRVAAVP-----DGL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~-----sg~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
+...+.+.++..||++..+. +.. ++++.+.. ..+|-||+-...+. .-.++++++++. .+|||++.
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~~~~~~~----giPvV~~~ 93 (297)
T 3rot_A 21 LFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDT-AFSKSLQRANKL----NIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSS-TTHHHHHHHHHH----TCCEEEES
T ss_pred HHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH-HHHHHHHHHHHC----CCCEEEEc
Confidence 45566777777899988755 223 34555544 34898887432221 114567777664 58999886
Q ss_pred ccC
Q 042954 125 LHD 127 (720)
Q Consensus 125 s~~ 127 (720)
...
T Consensus 94 ~~~ 96 (297)
T 3rot_A 94 TRP 96 (297)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 387
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=27.70 E-value=34 Score=37.81 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCC--ccchh-------hhHH-HHHHhhhhcCCCcccccC
Q 042954 228 SAYMQNMQGLSQLKCRSASNTC--STDME-------RQNE-CAKLETESLMPESKTGGA 276 (720)
Q Consensus 228 g~Hv~Rva~~s~~lA~~l~gl~--~~~~~-------~~~~-~~~l~~Aa~LHDIGKI~i 276 (720)
-.|+.-|+.+++.+++.+ ++. +.... .+++ ...+..||++||||.--+
T Consensus 66 ltHSL~V~~iar~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~HDiGH~PF 123 (444)
T 3bg2_A 66 LTHSLEVSVVGRSLGRMV-GKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIGNPPF 123 (444)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhccccccccccchhhHHHHHHHHHHhcccCCCCc
Confidence 568888999999888776 321 00000 1122 468999999999999644
No 388
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=27.68 E-value=30 Score=33.34 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCcccccC
Q 042954 225 EAESAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGGA 276 (720)
Q Consensus 225 ~~~g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~i 276 (720)
+-...|+-||+-++..++... +++.. ++..+...+++||++-+-+
T Consensus 37 EsVAeHS~~vA~iA~~la~~~-~vd~~------~~~r~~~maL~HDl~E~~~ 81 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKS-GESVE------KACKAATAALFHDLHEART 81 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHT-TCCHH------HHHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhhc-CCChh------HHHHHHHHHHHcchHHhhc
Confidence 455899999999999998754 66553 4467778899999988754
No 389
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.60 E-value=2.1e+02 Score=28.21 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPDG------LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg------~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+...++..||.+..+... .+.++.+.. ..+|-||+--.... -++++.+++. .+|||++-..
T Consensus 45 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~l~~~----~iPvV~i~~~ 115 (305)
T 3huu_A 45 VLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS--KSVDGFILLYSLKD---DPIEHLLNEF----KVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT--TCCSEEEESSCBTT---CHHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCcCC---cHHHHHHHHc----CCCEEEECCC
Confidence 4556667777789998875432 234555555 45888776432211 2667777653 5899988654
No 390
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=27.56 E-value=2.1e+02 Score=29.26 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=59.4
Q ss_pred cCHHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHHHHcCCCCceEEEEeccCC-CCCHHHHHHHHHhccCCCCCeE
Q 042954 49 ADDSTRQIISALLRKC-GYRVAA------VPDGLAAWETLKCRPHSIDLVLTEVELP-SISGFALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 49 Dd~~~r~~L~~lL~~~-gyeV~~------A~sg~eAle~L~~~~~~pDLVLlDv~MP-~~dGieLL~~Ir~~~~~p~ipV 120 (720)
|...-...+++++... +..|+. +.+..+|++.|... .++=||+-=.-+ -.+|+++|+++.+.. . .|
T Consensus 98 dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~l--G~~rILTSG~~~~a~~g~~~L~~Lv~~a--~--~i 171 (256)
T 1twd_A 98 DGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAEL--GIARVLTSGQKSDALQGLSKIMELIAHR--D--AP 171 (256)
T ss_dssp TSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHH--TCCEEEECTTSSSTTTTHHHHHHHHTSS--S--CC
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhh--C--Cc
Confidence 3334556666666543 677775 67899999999874 499999864433 578999999998764 2 34
Q ss_pred EEE-eccCCHHHHHHHHHcCCcEEE
Q 042954 121 IMM-SLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 121 IvL-Ts~~d~e~~~~Al~~GA~dYL 144 (720)
.+| -+--..+.+.+.+..|+..|-
T Consensus 172 ~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 172 IIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp EEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred EEEecCCcCHHHHHHHHHcCCCeEe
Confidence 444 333344444444467777765
No 391
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=27.46 E-value=42 Score=33.18 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPD 73 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~s 73 (720)
.||++|||.-- -.+-..|.+.|...||+|+....
T Consensus 3 ~m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r 36 (286)
T 3ius_A 3 AMTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSR 36 (286)
T ss_dssp --CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEES
T ss_pred CCcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEc
Confidence 36789999997 88888888888777999887443
No 392
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=27.42 E-value=1.8e+02 Score=32.25 Aligned_cols=66 Identities=9% Similarity=0.108 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.++.+.+ ..+|+|.+|........ ++++++|++.. +++|||+-+- ...+.+..+.++||+.+.+
T Consensus 257 ~~~a~~~~~--aG~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 257 KYRLDLLTQ--AGVDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHH--TTCSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 444444444 34999999887644333 58999999875 6788886432 5578888999999987765
No 393
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=27.40 E-value=1.5e+02 Score=26.60 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=48.1
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR--VAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye--V~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
..+|..||-++...+..++.+...++. +....+..+.+ ......||+|++...+.. ..+++.+...- .+.-
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L-~~gG 121 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAF---DDVPDNPDVIFIGGGLTA---PGVFAAAWKRL-PVGG 121 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGG---GGCCSCCSEEEECC-TTC---TTHHHHHHHTC-CTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhh---hccCCCCCEEEECCcccH---HHHHHHHHHhc-CCCC
Confidence 368999999999999999988877653 54445544332 221135999999887665 45666665543 1444
Q ss_pred eEEE
Q 042954 119 PVIM 122 (720)
Q Consensus 119 pVIv 122 (720)
.+|+
T Consensus 122 ~l~~ 125 (178)
T 3hm2_A 122 RLVA 125 (178)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 394
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=27.36 E-value=1.2e+02 Score=31.41 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=54.6
Q ss_pred EEEEEecCHHHH----HHHHHHHHhC-CCEE-EEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDSTR----QIISALLRKC-GYRV-AAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~r----~~L~~lL~~~-gyeV-~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
-|||-|.+-... ..++++-+.. ...+ +.+.+.+|+.+.++. ..|+|.+|-.-| +.++++.+.-. +
T Consensus 171 ~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~-----~~l~~av~~~~-~ 241 (287)
T 3tqv_A 171 AYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSG-----EDIDIAVSIAR-G 241 (287)
T ss_dssp SEEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCH-----HHHHHHHHHHT-T
T ss_pred EEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCH-----HHHHHHHHhhc-C
Confidence 377766664433 3333332222 2233 358999999998874 389999997433 23333332211 2
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
+ ..|..++--..+.+.+....|++.+-
T Consensus 242 ~-v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 242 K-VALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp T-CEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred C-ceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 3 46668888888888888899987554
No 395
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=27.28 E-value=2.7e+02 Score=26.26 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHhCCCE-EEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHc
Q 042954 61 LRKCGYR-VAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLK 138 (720)
Q Consensus 61 L~~~gye-V~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~ 138 (720)
|...+.- +....+.+++.++++.- ...+++|-+.+..| .+.+.++.+|+... ++. +|-+..-.+.+.+..|++.
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~-~~~-~ig~~~v~~~~~~~~a~~~ 82 (205)
T 1wa3_A 7 FKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKE-KGA-IIGAGTVTSVEQCRKAVES 82 (205)
T ss_dssp HHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHH-TTC-EEEEESCCSHHHHHHHHHH
T ss_pred HhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCC-CCc-EEEecccCCHHHHHHHHHc
Confidence 4444432 22355566655544321 13377776666654 56778888887641 133 3334333467788899999
Q ss_pred CCcEEEeCCCCHHHHHHHHH
Q 042954 139 GAADFLIKPVRRNELRNLWQ 158 (720)
Q Consensus 139 GA~dYL~KP~~~~eL~~~l~ 158 (720)
||+-. .-|.-..++....+
T Consensus 83 Gad~i-v~~~~~~~~~~~~~ 101 (205)
T 1wa3_A 83 GAEFI-VSPHLDEEISQFCK 101 (205)
T ss_dssp TCSEE-ECSSCCHHHHHHHH
T ss_pred CCCEE-EcCCCCHHHHHHHH
Confidence 98755 66744444444443
No 396
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=27.27 E-value=78 Score=32.46 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeccC----C-CCCHHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 56 IISALLRKCGYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVEL----P-SISGFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~M----P-~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
..-..|+..||.+.. +.+|-..+..|.. .+||.|=+|-.+ . +.....+++.|......-++. |+..+-.+
T Consensus 167 ~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~-vvAEGVEt 243 (294)
T 2r6o_A 167 TCLDALRARGVRLALDDFGTGYSSLSYLSQ--LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGME-VVAEGIET 243 (294)
T ss_dssp HHHHHHHHHTCEEEEEEETSSCBCHHHHHH--SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCE-EEECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCE-EEEecCCc
Confidence 334456777887665 7888777888877 459999999632 2 122345555554432112444 45778888
Q ss_pred HHHHHHHHHcCCcE----EEeCCCCHHHHHHHHHH
Q 042954 129 ISMVLKCMLKGAAD----FLIKPVRRNELRNLWQH 159 (720)
Q Consensus 129 ~e~~~~Al~~GA~d----YL~KP~~~~eL~~~l~~ 159 (720)
.+....+.+.|++- |+.||...+++...+..
T Consensus 244 ~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 244 AQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp HHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 88888888999753 47899999998877654
No 397
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.06 E-value=1.4e+02 Score=27.93 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHHHH-HHH--cCCCCceEEEEec
Q 042954 51 DSTRQIISALLRKCGYRVAA---VPDGLAAWE-TLK--CRPHSIDLVLTEV 95 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~---A~sg~eAle-~L~--~~~~~pDLVLlDv 95 (720)
+.....|.++|+..||+|.. +.|-.+.+. .+. .....+||||+-=
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 34567799999999988754 555544332 222 1113478887754
No 398
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=27.05 E-value=83 Score=30.82 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
-+++.++. ..||+| + .||+.-- ++++++++.- ++|||+=-.-.+.+.+.+|+++||+..-+-
T Consensus 118 ~~~~~i~~--~~PD~i--E-iLPGi~p-~iI~~i~~~~---~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 118 KGVALIQK--VQPDCI--E-LLPGIIP-EQVQKMTQKL---HIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HHHHHHHH--HCCSEE--E-EECTTCH-HHHHHHHHHH---CCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred HHHHHHhh--cCCCEE--E-ECCchhH-HHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 36677766 348977 3 3587653 7999998863 789998777888999999999999887654
No 399
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=26.90 E-value=41 Score=34.27 Aligned_cols=40 Identities=10% Similarity=-0.108 Sum_probs=24.8
Q ss_pred cchhhh-hhHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHhhhhcCCCccccc
Q 042954 222 PYLEAE-SAYMQNMQGLSQLKCRSASNTCSTDMERQNECAKLETESLMPESKTGG 275 (720)
Q Consensus 222 ~~v~~~-g~Hv~Rva~~s~~lA~~l~gl~~~~~~~~~~~~~l~~Aa~LHDIGKI~ 275 (720)
|.+.+. ..|....|+.++. - |.+++ | +-+||+||||||+-
T Consensus 54 PD~~v~ql~HaLQTAe~ar~----d-g~d~d------w---~~laaLlHDLGkll 94 (250)
T 2ibn_A 54 PDVDFPNSFHAFQTAEGIRK----A-HPDKD------W---FHLVGLLHDLGKVL 94 (250)
T ss_dssp ---CCCHHHHHHHHHHHHHH----H-STTCH------H---HHHHHHHTTGGGHH
T ss_pred CCCcccHHHHHHHHHHHHHH----h-CcChh------H---HHHHHHHhccHhhh
Confidence 333443 6777777775554 2 55544 3 56799999999973
No 400
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=26.83 E-value=1.3e+02 Score=27.10 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=44.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhc
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY--RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy--eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
.+|..||-++...+..+..+...+. .+.. ..+..+. +... ..||+|+++..+.. -..+++.+.+.
T Consensus 56 ~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~v~~~~~~~~--~~~~l~~~~~~ 123 (192)
T 1l3i_A 56 RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCKI-PDIDIAVVGGSGGE--LQEILRIIKDK 123 (192)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTTS-CCEEEEEESCCTTC--HHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh---cccC-CCCCEEEECCchHH--HHHHHHHHHHh
Confidence 6899999999999999998887654 3333 4555543 2221 25999999865543 35677777654
No 401
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=26.59 E-value=3.7e+02 Score=24.51 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHH
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRN 155 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~ 155 (720)
.++|+++++. .++++++|+.........+-..|..+|+.......+...
T Consensus 41 ~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~ 89 (180)
T 1k1e_A 41 GLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETACF 89 (180)
T ss_dssp HHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCHHHHHH
T ss_pred HHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCcHHHHH
Confidence 4788888764 579999999887665555557888888866555544433
No 402
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=26.59 E-value=1.3e+02 Score=30.64 Aligned_cols=104 Identities=12% Similarity=0.148 Sum_probs=55.7
Q ss_pred ccEEEEEecCHHHHHHHHHHHHh-CCCEEEE-ECC-HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRK-CGYRVAA-VPD-GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~-~gyeV~~-A~s-g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
++||.||---..-+..+...|.. .+++++. ++. .+.+-++.+. +.+ +..+-++. +. ++
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----~g~-------~~~~~~~~---l~-----~~ 65 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----WRI-------PYADSLSS---LA-----AS 65 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----HTC-------CBCSSHHH---HH-----TT
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----cCC-------CccCcHHH---hh-----cC
Confidence 47899998754444323344443 4688764 332 2222222221 111 11122332 21 12
Q ss_pred CeEEEEeccCC--HHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhh
Q 042954 118 IPVIMMSLHDS--ISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRR 163 (720)
Q Consensus 118 ipVIvLTs~~d--~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~ 163 (720)
+-+|+++.... .+.+..|++.|..=|+.||+ +.++....++.+-+.
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~ 115 (319)
T 1tlt_A 66 CDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARK 115 (319)
T ss_dssp CSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 33454544443 46788899999988999994 577776666655443
No 403
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=26.57 E-value=83 Score=31.77 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCCceEEEEeccCCCC---CHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHH
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPSI---SGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRN 151 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~~---dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~ 151 (720)
++++.|.+ ...|+|.+-.. -++ +.++++++||+ .++|||+|+.+. ..+..|++.||+-.+..+
T Consensus 24 ~~~~~l~~--~GaD~ielG~S-~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~------n~i~~G~dg~iiPdLp~e 89 (240)
T 1viz_A 24 EQLEILCE--SGTDAVIIGGS-DGVTEDNVLRMMSKVRR----FLVPCVLEVSAI------EAIVPGFDLYFIPSVLNS 89 (240)
T ss_dssp HHHHHHHT--SCCSEEEECC-----CHHHHHHHHHHHTT----SSSCEEEECSCG------GGCCSCCSEEEEEEETTB
T ss_pred HHHHHHHH--cCCCEEEECCC-CCCCHHHHHHHHHHhhC----cCCCEEEecCcc------ccccCCCCEEEEcccCcc
Confidence 34455544 23788887762 122 25667777765 379999999884 123789999998755443
No 404
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=26.51 E-value=2.6e+02 Score=25.75 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=46.4
Q ss_pred cEEEEEecCHHH--HHHHHHHHHhCCCEEEE--E--C-CHHHHHHH----HHcCCCCceEEEEeccCCCCC--------H
Q 042954 42 LRVLLVEADDST--RQIISALLRKCGYRVAA--V--P-DGLAAWET----LKCRPHSIDLVLTEVELPSIS--------G 102 (720)
Q Consensus 42 ~rVLIVDDd~~~--r~~L~~lL~~~gyeV~~--A--~-sg~eAle~----L~~~~~~pDLVLlDv~MP~~d--------G 102 (720)
.|||++-|.-.. ...+.+.|... +.|.. . . .....++. +.. ..||+|++.+..-+.. .
T Consensus 21 prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~pd~Vvi~~G~ND~~~~~~~~~~~ 97 (200)
T 4h08_A 21 PHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKN--TKFDVIHFNNGLHGFDYTEEEYDKS 97 (200)
T ss_dssp CEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHH--SCCSEEEECCCSSCTTSCHHHHHHH
T ss_pred CeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhc--CCCCeEEEEeeeCCCCCCHHHHHHH
Confidence 489999997442 33445555433 34432 1 1 11222332 223 4599999977655431 1
Q ss_pred -HHHHHHHHhccCCCCCeEEEEeccC
Q 042954 103 -FALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 103 -ieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
-++++.|++.. +.++||++|...
T Consensus 98 l~~ii~~l~~~~--p~~~ii~~~~~P 121 (200)
T 4h08_A 98 FPKLIKIIRKYA--PKAKLIWANTTP 121 (200)
T ss_dssp HHHHHHHHHHHC--TTCEEEEECCCC
T ss_pred HHHHHHHHhhhC--CCccEEEeccCC
Confidence 35677777765 788899887643
No 405
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=26.46 E-value=2.2e+02 Score=27.76 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPD------GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s------g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+.+.++..||.+..+.. ..+.++.+.. ..+|-||+-...+. + +.++.+++ ..+|||++-.
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~ 95 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS--GNVDGFVLSSINYN-D--PRVQFLLK----QKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT--TCCSEEEECSCCTT-C--HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc--CCCCEEEEeecCCC-c--HHHHHHHh----cCCCEEEECC
Confidence 4566778888888999887542 1345666655 44898877432222 1 56677765 3589998865
Q ss_pred c
Q 042954 126 H 126 (720)
Q Consensus 126 ~ 126 (720)
.
T Consensus 96 ~ 96 (287)
T 3bbl_A 96 S 96 (287)
T ss_dssp C
T ss_pred c
Confidence 3
No 406
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=26.36 E-value=3.7e+02 Score=26.57 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred CCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCC--HHH----HHHHHHcCCcEEEeC-----CCCHHHHH
Q 042954 86 HSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDS--ISM----VLKCMLKGAADFLIK-----PVRRNELR 154 (720)
Q Consensus 86 ~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d--~e~----~~~Al~~GA~dYL~K-----P~~~~eL~ 154 (720)
...|+|.+.. + -|+++++++++.. .+|||+..+-.. .+. +.++++.||+++..= .-++.+..
T Consensus 178 ~Gad~i~~~~--~--~~~~~l~~i~~~~---~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~ 250 (273)
T 2qjg_A 178 LGADIVKTSY--T--GDIDSFRDVVKGC---PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGIT 250 (273)
T ss_dssp TTCSEEEECC--C--SSHHHHHHHHHHC---SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHH
T ss_pred cCCCEEEECC--C--CCHHHHHHHHHhC---CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHH
Confidence 3489988874 2 4789999998753 689999887763 444 666778999887642 22444444
Q ss_pred HHHHHHHh
Q 042954 155 NLWQHVWR 162 (720)
Q Consensus 155 ~~l~~vlr 162 (720)
..+..+++
T Consensus 251 ~~l~~~~~ 258 (273)
T 2qjg_A 251 RAVCKIVH 258 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444444
No 407
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=26.36 E-value=62 Score=32.08 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=53.8
Q ss_pred HHHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeccCCCC-------CHHHHHHHHHhccC--CCCCeEEEEe
Q 042954 57 ISALLRKCGYRVAA-V--PDGLAAWETLKCRPHSIDLVLTEVELPSI-------SGFALLTLVMEHDV--CKNIPVIMMS 124 (720)
Q Consensus 57 L~~lL~~~gyeV~~-A--~sg~eAle~L~~~~~~pDLVLlDv~MP~~-------dGieLL~~Ir~~~~--~p~ipVIvLT 124 (720)
+.+.++..|..+.. + .+..++++.+.. ..|.|++=-..|+. .+++.++++|+... ..++||.+.-
T Consensus 104 ~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 104 TLCQIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp HHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 33444556666554 3 355555554432 37888776666752 35777788876531 1267888776
Q ss_pred ccCCHHHHHHHHHcCCcEEEeC
Q 042954 125 LHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 125 s~~d~e~~~~Al~~GA~dYL~K 146 (720)
+-.. +.+.++.++||+.++.=
T Consensus 181 GI~~-~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 181 GLKP-NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp SCCT-TTTHHHHHHTCCEEEES
T ss_pred CcCH-HHHHHHHHcCCCEEEEC
Confidence 6554 77888899999999875
No 408
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=26.29 E-value=1.8e+02 Score=29.89 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=46.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHh--CC------CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCC-CCH-------HHH
Q 042954 42 LRVLLVEADDSTRQIISALLRK--CG------YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPS-ISG-------FAL 105 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~--~g------yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~-~dG-------ieL 105 (720)
.+|..||-++.+.+..++.+.. .+ .++ ...|+.+.+.. ....||+||+|...|. .+| .++
T Consensus 102 ~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~-~~~D~~~~l~~---~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~ 177 (314)
T 1uir_A 102 EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL-VIDDARAYLER---TEERYDVVIIDLTDPVGEDNPARLLYTVEF 177 (314)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEE-EESCHHHHHHH---CCCCEEEEEEECCCCBSTTCGGGGGSSHHH
T ss_pred CEEEEEECCHHHHHHHHHHhHhhccccccCCceEE-EEchHHHHHHh---cCCCccEEEECCCCcccccCcchhccHHHH
Confidence 5899999999999988887753 12 233 36677665443 2346999999986654 112 577
Q ss_pred HHHHHhcc
Q 042954 106 LTLVMEHD 113 (720)
Q Consensus 106 L~~Ir~~~ 113 (720)
++.++...
T Consensus 178 l~~~~~~L 185 (314)
T 1uir_A 178 YRLVKAHL 185 (314)
T ss_dssp HHHHHHTE
T ss_pred HHHHHHhc
Confidence 88877654
No 409
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.05 E-value=1.3e+02 Score=26.16 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=29.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETL 81 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L 81 (720)
.-|+|.|.|..-++.+.+-.+..||+|.++.++.+....|
T Consensus 78 vliiiydqdqnrleefsrevrrrgfevrtvtspddfkksl 117 (134)
T 2l69_A 78 VLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSL 117 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHH
T ss_pred EEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHH
Confidence 3456667777777777777888888888888887765544
No 410
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=25.97 E-value=4.4e+02 Score=27.18 Aligned_cols=92 Identities=11% Similarity=0.012 Sum_probs=59.3
Q ss_pred EEEEEecCHHH----HHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCC
Q 042954 43 RVLLVEADDST----RQIISALLRKCGY--RVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCK 116 (720)
Q Consensus 43 rVLIVDDd~~~----r~~L~~lL~~~gy--eV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p 116 (720)
.|+|.|.+-.. .+.++.+-+..+. -.+.+.+.+++.+.++. ..|+|.+|- ++ .+.++++.+.- ..
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~-~e~l~~~v~~~-~~ 251 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FN-TDQMREAVKRV-NG 251 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CC-HHHHHHHHHTT-CT
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CC-HHHHHHHHHHh-CC
Confidence 46677666554 4555555555544 34458888888888764 389999996 33 34455554432 13
Q ss_pred CCeEEEEeccCCHHHHHHHHHcCCcEEE
Q 042954 117 NIPVIMMSLHDSISMVLKCMLKGAADFL 144 (720)
Q Consensus 117 ~ipVIvLTs~~d~e~~~~Al~~GA~dYL 144 (720)
.++|. .++--+.+.+.+....|++.+-
T Consensus 252 ~~~I~-ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 252 QARLE-VSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp TCCEE-ECCCSCHHHHHHHHHTTCSEEE
T ss_pred CCeEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 55554 5666689999999999996554
No 411
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=25.97 E-value=3.1e+02 Score=26.73 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCH-----------HHHHHHHHhccCCCCCeE
Q 042954 53 TRQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISG-----------FALLTLVMEHDVCKNIPV 120 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dG-----------ieLL~~Ir~~~~~p~ipV 120 (720)
+.+.+... ...|..+.. +.+..++.. +.. ...++|-..-...-..| -++++.+|... .++||
T Consensus 100 ~~~~~~~a-~~~Gl~~iv~v~~~~e~~~-~~~--~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~--~~~~i 173 (219)
T 2h6r_A 100 IEAVINKC-KNLGLETIVCTNNINTSKA-VAA--LSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEIN--KDVKV 173 (219)
T ss_dssp HHHHHHHH-HHHTCEEEEEESSSHHHHH-HTT--TCCSEEEECCCC--------------CSHHHHHHHHHHC--TTCEE
T ss_pred HHHHHHHH-HHCCCeEEEEeCCchHHHH-HHh--CCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhcc--CCCeE
Confidence 33333333 344776665 555555433 332 23577766554431122 24556666653 46889
Q ss_pred EEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 121 IMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 121 IvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
++-.+-...+.+..+...|++++|+=
T Consensus 174 i~ggGI~~~~~~~~~~~~gaDgvlVG 199 (219)
T 2h6r_A 174 LCGAGISKGEDVKAALDLGAEGVLLA 199 (219)
T ss_dssp EECSSCCSHHHHHHHHTTTCCCEEES
T ss_pred EEEeCcCcHHHHHHHhhCCCCEEEEc
Confidence 88888888888888999999999874
No 412
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.94 E-value=3.4e+02 Score=26.20 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD---G---LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s---g---~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||++..+.. . .+.++.+.. ..+|-||+-..-+. ...++++.+++. .+|||++-..
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~~~~~~~~~~~~----~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA--QKPDAIIEQLGNLD-VLNPWLQKINDA----GIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HCCSEEEEESSCHH-HHHHHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh-hhHHHHHHHHHC----CCcEEEecCC
Confidence 456777788888998877532 2 234555544 34888886532111 123566666653 5899888654
No 413
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=25.88 E-value=2.2e+02 Score=28.58 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=44.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCC-----CHHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY---RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSI-----SGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy---eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-----dGieLL~~Ir 110 (720)
.+|..||=++.+.+..++.+... ++ .|. ...|+.+.+.. ....||+||+|.-.|.. ...++++.++
T Consensus 100 ~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~ 176 (275)
T 1iy9_A 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK---SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIA 176 (275)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT---CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh---CCCCeeEEEECCCCCCCcchhhhHHHHHHHHH
Confidence 58999999999999988877431 12 222 35666655432 23469999999865432 1256777776
Q ss_pred hcc
Q 042954 111 EHD 113 (720)
Q Consensus 111 ~~~ 113 (720)
...
T Consensus 177 ~~L 179 (275)
T 1iy9_A 177 KAL 179 (275)
T ss_dssp HHE
T ss_pred Hhc
Confidence 553
No 414
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=25.87 E-value=2.3e+02 Score=29.16 Aligned_cols=95 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 44 VLLVEADDST----RQIISALLRKCG--YRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 44 VLIVDDd~~~----r~~L~~lL~~~g--yeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
|||-|++-.. ...++.+-+..+ --.+.+.+.+++.+.++... |+|++|- |...+-.+.++.++... +.
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~aGa---D~I~LDn-~~~~~~~~~v~~l~~~~--~~ 241 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKP---ELILLDN-FAVWQTQTAVQRRDSRA--PT 241 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCC---SEEEEET-CCHHHHHHHHHHHHHHC--TT
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCC---CEEEECC-CCHHHHHHHHHHhhccC--CC
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..|..++--+.+.+.+....|++-|.+
T Consensus 242 -v~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 242 -VMLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp -CEEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred -eEEEEECCCCHHHHHHHHhcCCCEEEE
No 415
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=25.79 E-value=1.1e+02 Score=31.67 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred ccEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECC-------------------------------------------
Q 042954 41 VLRVLLVE----ADDSTRQIISALLRKCGYRVAAVPD------------------------------------------- 73 (720)
Q Consensus 41 ~~rVLIVD----Dd~~~r~~L~~lL~~~gyeV~~A~s------------------------------------------- 73 (720)
.|||||+- .+..-...|...|+..|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 74 ----------------------GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 74 ----------------------g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
..+..++++. ..||+||+|. +...|.-+.+.+ .+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PD~Vv~~~--~~~~~~~aa~~~-------giP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA--WRPSVLLVDV--CALIGRVLGGLL-------DLPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEET--TCHHHHHHHHHT-------TCCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHh--cCCCEEEeCc--chhHHHHHHHHh-------CCCEEEEe
No 416
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=25.76 E-value=2.1e+02 Score=30.48 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHH
Q 042954 52 STRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISM 131 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~ 131 (720)
.....|.+.-+..|..+.+..-..+++++|.. ..+|+ .=+.-.++.-+.||+.+-+. ..|||+=|+....+.
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~--~~v~~--~KI~S~~~~N~pLL~~va~~----gKPviLstGmstl~E 149 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEA--HGIEI--IKIASCSFTDWPLLERIARS----DKPVVASTAGARRED 149 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH--TTCCE--EEECSSSTTCHHHHHHHHTS----CSCEEEECTTCCHHH
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHH--cCCCE--EEECcccccCHHHHHHHHhh----CCcEEEECCCCCHHH
Confidence 45566777777789888886666777888865 22444 34444567789999999764 479999999998887
Q ss_pred HHHHH
Q 042954 132 VLKCM 136 (720)
Q Consensus 132 ~~~Al 136 (720)
+..|+
T Consensus 150 i~~Av 154 (350)
T 3g8r_A 150 IDKVV 154 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 417
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=25.70 E-value=52 Score=33.69 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=38.4
Q ss_pred ccCCccEEEEEec----CHH----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEec
Q 042954 37 LPRMVLRVLLVEA----DDS----TRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 37 l~~m~~rVLIVDD----d~~----~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv 95 (720)
.+.|++||+|+-- +.. ....+.+.|++.||+|+.+......+..+.. ..+|+|+.=+
T Consensus 9 ~~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~--~~~D~v~~~~ 73 (317)
T 4eg0_A 9 DPKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKD--EGFVRAFNAL 73 (317)
T ss_dssp CGGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHH--TTCCEEEECC
T ss_pred chhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhh--cCCCEEEEcC
Confidence 4567889999975 222 3566777888899999998754332334444 3489998644
No 418
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=25.57 E-value=2.8e+02 Score=26.81 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCC-C-CHHHHHHHHHhccCCCCCeEEEE
Q 042954 52 STRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPS-I-SGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~-~-dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
.+...+.+.++..||.+..+.. .. +.++.+.. ..+|-||+--..+. . ...++++++++. .+|||++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~~~----~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS--QHIDGLIVEPTKSALQTPNIGYYLNLEKN----GIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEECCSSTTSCCTTHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--CCCCEEEEecccccccCCcHHHHHHHHhc----CCCEEEE
Confidence 4566778888888998887542 22 24455544 34898887443221 1 235677888764 5899988
Q ss_pred eccC
Q 042954 124 SLHD 127 (720)
Q Consensus 124 Ts~~ 127 (720)
....
T Consensus 106 ~~~~ 109 (298)
T 3tb6_A 106 NASY 109 (298)
T ss_dssp SSCC
T ss_pred ecCc
Confidence 6543
No 419
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=25.51 E-value=71 Score=36.94 Aligned_cols=98 Identities=8% Similarity=-0.074 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeccCC-CCC-HHHHHHHHHhccCCCCCeEEEEeccCC
Q 042954 54 RQIISALLRKCGYRVAAV---PDGLAAWETLKCRPHSIDLVLTEVELP-SIS-GFALLTLVMEHDVCKNIPVIMMSLHDS 128 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~~A---~sg~eAle~L~~~~~~pDLVLlDv~MP-~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d 128 (720)
...+..+|+..||+|+.. .+ ++..+.+.+ ..+|||.+-..+. -+. .-++++.|++.. +..|++.+...
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e--~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG----~~~V~vgG~P~ 599 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALKAAG----AKALYLSGAFK 599 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHHHTT----CSEEEEESCGG
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh--cCCCEEEEecccHHHHHHHHHHHHHHHhCC----CCeEEEeCCCC
Confidence 346677889999998763 34 777777766 3489988865443 122 346788888765 23456777532
Q ss_pred HH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 129 IS--MVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 129 ~e--~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
.. ...+..+ |+++|+.--.+..++...+..
T Consensus 600 ~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~~ 631 (637)
T 1req_B 600 EFGDDAAEAEK-LIDGRLFMGMDVVDTLSSTLD 631 (637)
T ss_dssp GGGGGHHHHHH-HCCCEECTTCCHHHHHHHHHH
T ss_pred ccchhhHHHHh-ccceEecCCcCHHHHHHHHHH
Confidence 21 1223334 999999877877766655544
No 420
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=25.43 E-value=1.4e+02 Score=32.25 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=39.6
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--C----CE---E-EEECCHHHHHHHHHcCCCCceEEEEeccC
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--G----YR---V-AAVPDGLAAWETLKCRPHSIDLVLTEVEL 97 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--g----ye---V-~~A~sg~eAle~L~~~~~~pDLVLlDv~M 97 (720)
.+|-+||=|+.+.+..++.|... + .+ | +...|+.+.++...+....||+||+|+--
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 47999999999999998887421 1 12 3 34778888877554333469999999854
No 421
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=25.39 E-value=1.2e+02 Score=30.66 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=52.9
Q ss_pred EEEEEec-CHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC-CC
Q 042954 43 RVLLVEA-DDST---RQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC-KN 117 (720)
Q Consensus 43 rVLIVDD-d~~~---r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~-p~ 117 (720)
+|+||-. .... .+.+...|+..|+++. . ..+|+||+= |.|| .++..++..... ++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~--~~~D~vv~l----GGDG-T~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------D--VEPEIVISI----GGDG-TFLSAFHQYEERLDE 61 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------S--SSCSEEEEE----ESHH-HHHHHHHHTGGGTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------C--CCCCEEEEE----cCcH-HHHHHHHHHhhcCCC
Confidence 5555533 3333 3345556777788871 1 348888763 6677 344444443211 37
Q ss_pred CeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 118 IPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 118 ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
+||+-+-. |-.+|+. .+.++++..++..++++.
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g~ 94 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKGE 94 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTTC
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcCC
Confidence 89887732 5556665 556778888888888764
No 422
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=25.35 E-value=2.7e+02 Score=27.88 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=48.1
Q ss_pred cEEEEEe-cCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVE-ADDS---TRQIISALLRKCGYRVAA---V----PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVD-Dd~~---~r~~L~~lL~~~gyeV~~---A----~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|.||- |+.. ..+.+++.|+..|.++.. + .+....+..+.. ..+|+||+-... ...+.+++.++
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~d~i~~~~~~--~~a~~~~~~~~ 215 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED--EAPQAIYLAMAY--EDAAPFLRALR 215 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH--HCCSEEEEESCH--HHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh--cCCCEEEEccCc--hHHHHHHHHHH
Confidence 3555553 3333 334566677777776543 1 355566666654 237888875421 24567788887
Q ss_pred hccCCCCCeEEEEeccCCHHH
Q 042954 111 EHDVCKNIPVIMMSLHDSISM 131 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~ 131 (720)
+.. -.+|+|...+......
T Consensus 216 ~~g--~~~p~~~~~~~~~~~~ 234 (358)
T 3hut_A 216 ARG--SALPVYGSSALYSPKF 234 (358)
T ss_dssp HTT--CCCCEEECGGGCSHHH
T ss_pred HcC--CCCcEEecCcccCHHH
Confidence 765 4577765555444443
No 423
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=25.33 E-value=1.8e+02 Score=30.01 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=61.2
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHcCCCCceE-EEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLAAWETLKCRPHSIDL-VLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A~sg~eAle~L~~~~~~pDL-VLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
++||.||---..-.......|... +++++.+.+...... +... +.+ +..| ++.+-.. +++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~--~~~~--~~~~~~~~-----------~~~ll~~---~~v 68 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKV--HADW--PAIPVVSD-----------PQMLFND---PSI 68 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHH--HTTC--SSCCEESC-----------HHHHHHC---SSC
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHH--HhhC--CCCceECC-----------HHHHhcC---CCC
Confidence 479999998665555344555554 788876443332211 1111 111 1111 2223222 234
Q ss_pred eEEEEecc--CCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLH--DSISMVLKCMLKGAADFLIKP--VRRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~--~d~e~~~~Al~~GA~dYL~KP--~~~~eL~~~l~~vlr~~ 164 (720)
=+|+++.. ...+.+..|+++|.+=|+-|| .+.++....+..+-+..
T Consensus 69 D~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g 118 (352)
T 3kux_A 69 DLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAG 118 (352)
T ss_dssp CEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTT
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcC
Confidence 34444333 336788899999999999999 66778877777665543
No 424
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.32 E-value=1.8e+02 Score=28.26 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||++..+.. .. +.++.+.. ..+|-||+-..-+. .-.++++++++. .+|||++-..
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~~----~iPvV~~~~~ 98 (293)
T 3l6u_A 26 LINAFKAEAKANKYEALVATSQNSRISEREQILEFVH--LKVDAIFITTLDDV-YIGSAIEEAKKA----GIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH--TTCSEEEEECSCTT-TTHHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH-HHHHHHHHHHHc----CCCEEEecCC
Confidence 455677778888998877432 22 34555554 34898887532222 112667777653 5899988654
Q ss_pred C
Q 042954 127 D 127 (720)
Q Consensus 127 ~ 127 (720)
.
T Consensus 99 ~ 99 (293)
T 3l6u_A 99 I 99 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 425
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=25.20 E-value=3.9e+02 Score=27.45 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHH
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELR 154 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~ 154 (720)
++..+++.. .|++|+--.. +.-|+-+++.+.. .+|||.. .. ....+.+..|..+|+.. +.++|.
T Consensus 307 ~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAma~-----G~PvI~~-~~---~g~~e~i~~~~~g~l~~--d~~~la 370 (416)
T 2x6q_A 307 REVNAFQRA----SDVILQMSIR-EGFGLTVTEAMWK-----GKPVIGR-AV---GGIKFQIVDGETGFLVR--DANEAV 370 (416)
T ss_dssp HHHHHHHHH----CSEEEECCSS-CSSCHHHHHHHHT-----TCCEEEE-SC---HHHHHHCCBTTTEEEES--SHHHHH
T ss_pred HHHHHHHHh----CCEEEECCCc-CCCccHHHHHHHc-----CCCEEEc-cC---CCChhheecCCCeEEEC--CHHHHH
Confidence 344455543 5666654332 3346667777643 4677753 22 34456667788899986 889999
Q ss_pred HHHHHHHh
Q 042954 155 NLWQHVWR 162 (720)
Q Consensus 155 ~~l~~vlr 162 (720)
..|..++.
T Consensus 371 ~~i~~ll~ 378 (416)
T 2x6q_A 371 EVVLYLLK 378 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888765
No 426
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=25.01 E-value=4e+02 Score=28.30 Aligned_cols=88 Identities=10% Similarity=-0.120 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEeccCCC----------------------------
Q 042954 53 TRQIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTEVELPS---------------------------- 99 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlDv~MP~---------------------------- 99 (720)
+.+.|+.+-+..+..|.. + -+.+.|..+.+. .+|.|.+.-. .+
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a---Gad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY---GIKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT---TCCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC---CCCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 555666665555655544 3 467777766553 3788887543 22
Q ss_pred -CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 100 -ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 100 -~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
......+.+++... +++|||.-.+-.+...+.+++.+||+....-
T Consensus 251 g~pt~~~l~~v~~~~--~~ipvia~GGI~~~~d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 251 GVPTAASIMEVRYSV--PDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296 (368)
T ss_dssp SCBHHHHHHHHHHHS--TTCEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred cccHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 12234556666654 4699999999899999999999999888764
No 427
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=24.88 E-value=1.4e+02 Score=31.59 Aligned_cols=43 Identities=12% Similarity=0.208 Sum_probs=28.4
Q ss_pred CCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhh
Q 042954 116 KNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRR 163 (720)
Q Consensus 116 p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~ 163 (720)
-.+|+|++-...+.. +.++.|+. +++.+ +.++|...+..++..
T Consensus 325 ~G~PvV~~~~~~~~~---e~v~~G~~-~lv~~-d~~~l~~ai~~ll~d 367 (396)
T 3dzc_A 325 LGKPVLVMRETTERP---EAVAAGTV-KLVGT-NQQQICDALSLLLTD 367 (396)
T ss_dssp GTCCEEECCSSCSCH---HHHHHTSE-EECTT-CHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCcch---HHHHcCce-EEcCC-CHHHHHHHHHHHHcC
Confidence 368999753333322 34567864 77665 789999998887753
No 428
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=24.77 E-value=1.2e+02 Score=30.99 Aligned_cols=62 Identities=5% Similarity=0.057 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCEEE---E----ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEE
Q 042954 54 RQIISALLRKCGYRVA---A----VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVI 121 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~---~----A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVI 121 (720)
.+.+++.|+..|.+|+ . ..+....+..++. ..+|+||+.. .+.+...+++.+++.. -.+|+|
T Consensus 158 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~--~~~~a~~~~~~~~~~g--~~~~~i 226 (364)
T 3lop_A 158 ITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLA--ADVQAIFLGA--TAEPAAQFVRQYRARG--GEAQLL 226 (364)
T ss_dssp HHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH--SCCSEEEEES--CHHHHHHHHHHHHHTT--CCCEEE
T ss_pred HHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHh--CCCCEEEEec--CcHHHHHHHHHHHHcC--CCCeEE
Confidence 3445556666664432 1 1244555555554 2377777643 2234566677776654 345544
No 429
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=24.67 E-value=1.3e+02 Score=31.76 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Q 042954 103 FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQH 159 (720)
Q Consensus 103 ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~ 159 (720)
.+.++.+|+.. |..+|++... +.+.+.+|+++|++..+...+++++|+.+++.
T Consensus 219 ~~Av~~ar~~~--p~~kIeVEVd--tldea~eAl~aGaD~I~LDn~~~~~l~~av~~ 271 (320)
T 3paj_A 219 RQAISTAKQLN--PGKPVEVETE--TLAELEEAISAGADIIMLDNFSLEMMREAVKI 271 (320)
T ss_dssp HHHHHHHHHHS--TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCeEEEEEC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 36677777765 6678877654 35778899999999999999999999988875
No 430
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=24.57 E-value=3.1e+02 Score=30.81 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCCceEE-EEeccC----CCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHH-cCCcEEEeC--
Q 042954 75 LAAWETLKCRPHSIDLV-LTEVEL----PSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCML-KGAADFLIK-- 146 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLV-LlDv~M----P~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~-~GA~dYL~K-- 146 (720)
.+..+.+.+. .++.| +.++.- .+. -+++++.|++. -.+|||.--+-.+.+.+.++++ .|+++.+.-
T Consensus 455 ~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~-d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a 528 (555)
T 1jvn_A 455 WELTRACEAL--GAGEILLNCIDKDGSNSGY-DLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 528 (555)
T ss_dssp HHHHHHHHHT--TCCEEEECCGGGTTTCSCC-CHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCCCCCCC-CHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 3444444442 25544 456532 233 37899999876 3789998888889999999997 899887653
Q ss_pred ----CCCHHHHHHHHH
Q 042954 147 ----PVRRNELRNLWQ 158 (720)
Q Consensus 147 ----P~~~~eL~~~l~ 158 (720)
++...+++..++
T Consensus 529 ~~~~~~~~~e~~~~l~ 544 (555)
T 1jvn_A 529 FHRGEFTVNDVKEYLL 544 (555)
T ss_dssp HHTTSCCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 678887776544
No 431
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=24.54 E-value=1.4e+02 Score=28.30 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=47.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGYR--VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKN 117 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gye--V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ 117 (720)
..+|..||-++...+..++.++..|+. +.. ..+..+.+.. . ..||+|+++..+ +-- +++.+...- .+.
T Consensus 77 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~-~~~D~v~~~~~~---~~~-~l~~~~~~L-kpg 147 (204)
T 3njr_A 77 GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD---L-PLPEAVFIGGGG---SQA-LYDRLWEWL-APG 147 (204)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT---S-CCCSEEEECSCC---CHH-HHHHHHHHS-CTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc---C-CCCCEEEECCcc---cHH-HHHHHHHhc-CCC
Confidence 468999999999999999888877643 433 4555443321 1 359999988744 322 777776543 144
Q ss_pred CeEEEE
Q 042954 118 IPVIMM 123 (720)
Q Consensus 118 ipVIvL 123 (720)
-.+|+.
T Consensus 148 G~lv~~ 153 (204)
T 3njr_A 148 TRIVAN 153 (204)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 444433
No 432
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=24.47 E-value=1.6e+02 Score=24.87 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 51 DSTRQIISALLRKCGYRVAA---VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~---A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
..+.+.+..++......+.+ |.....+..+|.... ++....|+..-..++.++...+++......+|.|++-+.
T Consensus 6 ~~~~~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~ 82 (113)
T 3rhb_A 6 SRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLG--VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGK 82 (113)
T ss_dssp CHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHTT--CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred HHHHHHHHHHHhcCCEEEEECCCChhHHHHHHHHHHcC--CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence 44566777778777655554 556777888887744 455566765433356677777766544578999988553
No 433
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=24.46 E-value=92 Score=31.72 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=39.1
Q ss_pred HHHHHHHhccCCCCCeEEEEecc------CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHhhc
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLH------DSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWRRH 164 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~------~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr~~ 164 (720)
.+++.+++.. ..+|+|+||=+ .-.....+|.++|+++.|+-.+..+|... +..+.+.+
T Consensus 77 ~~~~~~~~~r--~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~~~ 140 (252)
T 3tha_A 77 SVFELLARIK--TKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECERY 140 (252)
T ss_dssp HHHHHHHHCC--CSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHHHT
T ss_pred HHHHHHHHHh--cCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHHc
Confidence 4455555544 34899999853 33456778899999999999888887544 34444433
No 434
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=24.38 E-value=4.8e+02 Score=26.68 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=45.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeC
Q 042954 73 DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 73 sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+..+.++.+.+ ..+|+|.+....| .++++++++. .++|+... .+.+.+..+...|++.++.-
T Consensus 84 ~~~~~~~~~~~--~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIE--AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHh--cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 34567777766 3499999988766 5888888874 46777543 45677888999999988873
No 435
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=24.15 E-value=1.3e+02 Score=31.45 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=61.1
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKC-GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~-gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~i 118 (720)
.++||.||---..-+......|... +++++.+.+..... +.. .....-+..|+ +.+-.. +++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~-~~~~~~~~~~~-----------~~ll~~---~~v 66 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL--SKE-RYPQASIVRSF-----------KELTED---PEI 66 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG--GGT-TCTTSEEESCS-----------HHHHTC---TTC
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHH-hCCCCceECCH-----------HHHhcC---CCC
Confidence 3579999987665544344445444 78887654433211 111 11011122222 223222 234
Q ss_pred eEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 119 PVIMMSLHD--SISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 119 pVIvLTs~~--d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
=+|+++... ..+.+..|+++|.+=|+-||+ +.++....+..+-+..
T Consensus 67 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g 116 (362)
T 3fhl_A 67 DLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKG 116 (362)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred CEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 344444333 367888999999999999995 7788887777765543
No 436
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=24.05 E-value=2.4e+02 Score=28.27 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=43.8
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC----------EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCC-----HH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY----------RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSIS-----GF 103 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy----------eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d-----Gi 103 (720)
.+|..||-++.+.+..++.+ .. ++ .|. ...|+.+.+.. . ..||+||+|.-.|... ..
T Consensus 99 ~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~--~~fD~Ii~d~~~~~~~~~~l~~~ 173 (281)
T 1mjf_A 99 DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N--RGFDVIIADSTDPVGPAKVLFSE 173 (281)
T ss_dssp SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C--CCEEEEEEECCCCC-----TTSH
T ss_pred CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c--CCeeEEEECCCCCCCcchhhhHH
Confidence 58999999999999888877 32 22 232 35677665543 2 4599999998654211 24
Q ss_pred HHHHHHHhcc
Q 042954 104 ALLTLVMEHD 113 (720)
Q Consensus 104 eLL~~Ir~~~ 113 (720)
++++.+++..
T Consensus 174 ~~l~~~~~~L 183 (281)
T 1mjf_A 174 EFYRYVYDAL 183 (281)
T ss_dssp HHHHHHHHHE
T ss_pred HHHHHHHHhc
Confidence 6677776553
No 437
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=23.99 E-value=1.7e+02 Score=33.17 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=42.2
Q ss_pred CceEEEEeccCCCCC-HHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 87 SIDLVLTEVELPSIS-GFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 87 ~pDLVLlDv~MP~~d-GieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..|+|++|..--... -++++++|++.. |+++||. -.-...+.+...+++||+...+
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~--p~~~via-GNVaT~e~a~~Li~aGAD~vkV 349 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTY--PKIDVIA-GNVVTREQAAQLIAAGADGLRI 349 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhC--CcceEEe-ccccCHHHHHHHHHcCCCEEee
Confidence 489999998654333 379999999876 7887764 4445677788888999987654
No 438
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=23.92 E-value=2.3e+02 Score=25.10 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHH-HHHHHcCCCC---ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEE
Q 042954 51 DSTRQIISALLRKCGYRVAA---VPDGLAA-WETLKCRPHS---IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~---A~sg~eA-le~L~~~~~~---pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
....+.+..++......|.+ |.....| ..+|.. .. ++..++|+.... +|.++...|++....+.+|+|++
T Consensus 24 ~~~~~~v~~~i~~~~Vvvy~~~~Cp~C~~a~k~~L~~--~~~~~i~~~~vdvd~~~-~~~~~~~~L~~~~g~~tVP~vfi 100 (129)
T 3ctg_A 24 QETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQE--LNVPKSKALVLELDEMS-NGSEIQDALEEISGQKTVPNVYI 100 (129)
T ss_dssp HHHHHHHHHHHHHSSEEEEECTTCHHHHHHHHHHHTT--SCCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCchHHHHHHHHHh--cCccCCCcEEEEccccC-CHHHHHHHHHHHhCCCCCCEEEE
Confidence 45677788888776655555 3345667 667755 34 778888886533 46666666666544578999987
Q ss_pred ec
Q 042954 124 SL 125 (720)
Q Consensus 124 Ts 125 (720)
-+
T Consensus 101 ~g 102 (129)
T 3ctg_A 101 NG 102 (129)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 439
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=23.91 E-value=34 Score=35.61 Aligned_cols=108 Identities=14% Similarity=0.216 Sum_probs=60.4
Q ss_pred CccEEEEEecCHHHHHHHHH-HHHh-CCCEEEEECCHHH-HHHHHHcCCCCceEE-EEeccCCCCCHHHHHHHHHhccCC
Q 042954 40 MVLRVLLVEADDSTRQIISA-LLRK-CGYRVAAVPDGLA-AWETLKCRPHSIDLV-LTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~-lL~~-~gyeV~~A~sg~e-Ale~L~~~~~~pDLV-LlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
|++||.||---..-+..... +|.. .+++++.+.+... ..+..... +.+- ..|+ +.+-..
T Consensus 1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~~~~-----------~~ll~~--- 63 (345)
T 3f4l_A 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIY---SHIHFTSDL-----------DEVLND--- 63 (345)
T ss_dssp -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGG---TTCEEESCT-----------HHHHTC---
T ss_pred CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhc---CCCceECCH-----------HHHhcC---
Confidence 56788998887665543334 4443 3688876444321 11222111 1221 1121 222222
Q ss_pred CCCeEEEEeccC--CHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 116 KNIPVIMMSLHD--SISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 116 p~ipVIvLTs~~--d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+++=+|+++... ..+.+.+|+++|.+=|+.||+ +.++....+..+-+..
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g 116 (345)
T 3f4l_A 64 PDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKG 116 (345)
T ss_dssp TTEEEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 344455554433 367888999999999999995 7788877777665543
No 440
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.78 E-value=1.6e+02 Score=29.09 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCEEEEECCHH------HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPDGL------AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~sg~------eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||.+..+.... +.++.+.. ..+|-||+--... + -++++.+++. .+|||++-..
T Consensus 30 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~--~-~~~~~~l~~~----~iPvV~i~~~ 100 (295)
T 3hcw_A 30 VLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ--RMVDAFILLYSKE--N-DPIKQMLIDE----SMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT--TCCSEEEESCCCT--T-CHHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh--CCcCEEEEcCccc--C-hHHHHHHHhC----CCCEEEECCC
Confidence 45566777778899988754321 24555555 3488877742211 1 2566777653 5899988654
No 441
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=23.76 E-value=2.3e+02 Score=31.61 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEecc----CC-CCCHHHHHHHHHhccC----CCCCeEEE
Q 042954 54 RQIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVE----LP-SISGFALLTLVMEHDV----CKNIPVIM 122 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~----MP-~~dGieLL~~Ir~~~~----~p~ipVIv 122 (720)
.+.++.+-+..+..|+ .+.+.++|..+.+. .+|.|++.-. +. ....++++..+++.-. ...+|||+
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia 408 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEI---GVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHT---TCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc---CCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEE
Confidence 3445544444555444 36778888776653 3888888432 11 1234677777765421 24799999
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeC
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
-.+-.+...+.+++..||+...+=
T Consensus 409 ~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 409 DGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 999999999999999999887653
No 442
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=23.66 E-value=5e+02 Score=24.98 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=49.9
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHH-HHHHHHHhccCCCCC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGF-ALLTLVMEHDVCKNI 118 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGi-eLL~~Ir~~~~~p~i 118 (720)
|..+|||.--..-+-..+.+.|...|+.|+.+....+.++.+.........+-+|+ -+.+.+ ++++.+.+.. ..+
T Consensus 1 m~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv--~~~~~v~~~~~~~~~~~--g~i 76 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDV--ADPLTLKKFVEYAMEKL--QRI 76 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCT--TSHHHHHHHHHHHHHHH--SCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeEEeeC--CCHHHHHHHHHHHHHHc--CCC
Confidence 34578888888889999999998889998875544444444443222344444555 343333 5666666554 345
Q ss_pred eEEEEec
Q 042954 119 PVIMMSL 125 (720)
Q Consensus 119 pVIvLTs 125 (720)
-+++-.+
T Consensus 77 d~lv~nA 83 (247)
T 3dii_A 77 DVLVNNA 83 (247)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 5665543
No 443
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=23.61 E-value=1.1e+02 Score=27.73 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=44.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGYR--VAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gye--V~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|..||-++...+..+..+...++. +.. ..+..+.+..+ ...||+|++|.-.....-.++++.+.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL---TGRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB---CSCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh---cCCCCEEEECCCCCcchHHHHHHHHH
Confidence 58999999999999999998877642 433 55666544332 13499999985331122345666665
No 444
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=23.47 E-value=2.7e+02 Score=28.82 Aligned_cols=85 Identities=16% Similarity=0.028 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEecc----------------------C-CCCCHHHHH
Q 042954 55 QIISALLRKCGYRVAA--V---PDGLAAWETLKCRPHSIDLVLTEVE----------------------L-PSISGFALL 106 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~--A---~sg~eAle~L~~~~~~pDLVLlDv~----------------------M-P~~dGieLL 106 (720)
+.++.+-+ .+..|.. + .+.++|..+. + ..+|.|.+.-. + -+...++++
T Consensus 172 ~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~-~--~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 247 (332)
T 1vcf_A 172 ERLAELLP-LPFPVMVKEVGHGLSREAALALR-D--LPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAI 247 (332)
T ss_dssp HHHHHHCS-CSSCEEEECSSSCCCHHHHHHHT-T--SCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHH
T ss_pred HHHHHHHc-CCCCEEEEecCCCCCHHHHHHHH-H--cCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHH
Confidence 44444434 4554444 3 5777776543 3 34888877431 1 123567888
Q ss_pred HHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 107 TLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 107 ~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
..+++.- +++|||...+-.+...+.+++..||+....
T Consensus 248 ~~v~~~~--~~ipvia~GGI~~~~d~~kal~~GAd~V~i 284 (332)
T 1vcf_A 248 LEVREVL--PHLPLVASGGVYTGTDGAKALALGADLLAV 284 (332)
T ss_dssp HHHHHHC--SSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhc--CCCeEEEECCCCCHHHHHHHHHhCCChHhh
Confidence 8887754 379999999999999999999999987654
No 445
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=23.47 E-value=98 Score=29.23 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=49.2
Q ss_pred ccEEEEEecCHH----------HHHHHHHHHHhCCCEEEEE-----------------C---CHHHHHHHHHc--CCCCc
Q 042954 41 VLRVLLVEADDS----------TRQIISALLRKCGYRVAAV-----------------P---DGLAAWETLKC--RPHSI 88 (720)
Q Consensus 41 ~~rVLIVDDd~~----------~r~~L~~lL~~~gyeV~~A-----------------~---sg~eAle~L~~--~~~~p 88 (720)
.++|+++-|.-. +...|.+.|...++.+... - ...+.+..+.. ....|
T Consensus 5 ~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~~p 84 (215)
T 2vpt_A 5 TIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHNP 84 (215)
T ss_dssp EEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHHCC
T ss_pred ceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhccCC
Confidence 357888877543 4567778887767665432 1 11333333221 01348
Q ss_pred eEEEEeccCCCC--------CH-HHHHHHHHhccCCCCCeEEEEeccC
Q 042954 89 DLVLTEVELPSI--------SG-FALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 89 DLVLlDv~MP~~--------dG-ieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
|+||+.+..-|. .. -.+++.|++.. |.++||+++-..
T Consensus 85 d~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~--p~~~ii~~~~~p 130 (215)
T 2vpt_A 85 DVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVK--PNVTLFVADYYP 130 (215)
T ss_dssp SEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHC--TTCEEEEECCCS
T ss_pred CEEEEEccccccCCCCChhHHHHHHHHHHHHHhC--CCCEEEEEeCCC
Confidence 999987632211 11 25777888765 788888887554
No 446
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=23.47 E-value=2.8e+02 Score=27.10 Aligned_cols=66 Identities=12% Similarity=-0.049 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HH---HHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEE
Q 042954 52 STRQIISALLRKCGYRVAAVPDG------LA---AWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIM 122 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~sg------~e---Ale~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIv 122 (720)
.+...+.+.++..||.+..+... .+ .++.+.. ..+|-||+-...+. -+.++.+++. .+|||+
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~l~~~----~iPvV~ 95 (290)
T 2rgy_A 25 TILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG--RDCDGVVVISHDLH---DEDLDELHRM----HPKMVF 95 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH--TTCSEEEECCSSSC---HHHHHHHHHH----CSSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh--cCccEEEEecCCCC---HHHHHHHhhc----CCCEEE
Confidence 35566777788889998775321 23 5666655 34898887432222 3566777653 589998
Q ss_pred Eecc
Q 042954 123 MSLH 126 (720)
Q Consensus 123 LTs~ 126 (720)
+-..
T Consensus 96 ~~~~ 99 (290)
T 2rgy_A 96 LNRA 99 (290)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 8653
No 447
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=23.46 E-value=2.3e+02 Score=28.89 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 52 STRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
.+...+...++..||.+..+.. .. +.++.+.. ..+|-||+--. ..+ .++++.+++. .+|+|++.
T Consensus 87 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~--~~~-~~~~~~l~~~----~iPvV~i~ 156 (355)
T 3e3m_A 87 QTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR--RRPEAMVLSYD--GHT-EQTIRLLQRA----SIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEECS--CCC-HHHHHHHHHC----CSCEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC--CCC-HHHHHHHHhC----CCCEEEEC
Confidence 3556677778888999887542 22 34455544 34887776321 112 3667777653 58999884
No 448
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=23.37 E-value=1.6e+02 Score=27.42 Aligned_cols=75 Identities=13% Similarity=-0.003 Sum_probs=48.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
.+|..||-++...+..++.++..++ .+. ...+..+.+..+ ..||+|+++..+. +-.++++.+.+.- .+.-.
T Consensus 65 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~D~i~~~~~~~--~~~~~l~~~~~~L-kpgG~ 137 (204)
T 3e05_A 65 GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL----PDPDRVFIGGSGG--MLEEIIDAVDRRL-KSEGV 137 (204)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS----CCCSEEEESCCTT--CHHHHHHHHHHHC-CTTCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC----CCCCEEEECCCCc--CHHHHHHHHHHhc-CCCeE
Confidence 5899999999999999988876653 122 244443332211 3499999998665 4456777776653 24444
Q ss_pred EEEE
Q 042954 120 VIMM 123 (720)
Q Consensus 120 VIvL 123 (720)
+++.
T Consensus 138 l~~~ 141 (204)
T 3e05_A 138 IVLN 141 (204)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 449
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=23.36 E-value=1.1e+02 Score=31.14 Aligned_cols=60 Identities=10% Similarity=0.173 Sum_probs=46.2
Q ss_pred CCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCC
Q 042954 86 HSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVR 149 (720)
Q Consensus 86 ~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~ 149 (720)
+.||+||.=-=-|..-|-.-.+++-.. .++|.|+++.-.... ..++++..-.+||.=+.+
T Consensus 63 ~~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 63 FEPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp HCCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTS
T ss_pred cCCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecC
Confidence 679999987666677788777777655 589999999877665 568888888888876654
No 450
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.30 E-value=3e+02 Score=28.38 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=47.7
Q ss_pred ccCCccEEEEEecCH-------HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHc-CCCCceEEEEeccCCCCCH--HH
Q 042954 37 LPRMVLRVLLVEADD-------STRQIISALLRKCGYRVAAV--PDGLAAWETLKC-RPHSIDLVLTEVELPSISG--FA 104 (720)
Q Consensus 37 l~~m~~rVLIVDDd~-------~~r~~L~~lL~~~gyeV~~A--~sg~eAle~L~~-~~~~pDLVLlDv~MP~~dG--ie 104 (720)
.++||.+|+||=... .....+..+|+..|+++... ....++.+++++ ....+|+||+= +.|| .+
T Consensus 20 ~~m~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~----GGDGTv~~ 95 (337)
T 2qv7_A 20 SHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAA----GGDGTLNE 95 (337)
T ss_dssp CCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE----ECHHHHHH
T ss_pred cccccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE----cCchHHHH
Confidence 344556777765422 34456788888888766542 332344333321 11348888874 6777 46
Q ss_pred HHHHHHhccCCCCCeEEEEec
Q 042954 105 LLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 105 LL~~Ir~~~~~p~ipVIvLTs 125 (720)
++..+.+.. ..+|+.++-.
T Consensus 96 v~~~l~~~~--~~~pl~iIP~ 114 (337)
T 2qv7_A 96 VVNGIAEKP--NRPKLGVIPM 114 (337)
T ss_dssp HHHHHTTCS--SCCEEEEEEC
T ss_pred HHHHHHhCC--CCCcEEEecC
Confidence 777774332 4678777754
No 451
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=23.14 E-value=91 Score=30.92 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=49.8
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCC-CHHHHHHHHHhccCCC
Q 042954 41 VLRVLLVEADDSTRQIISALLRKCGY--RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSI-SGFALLTLVMEHDVCK 116 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~gy--eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-dGieLL~~Ir~~~~~p 116 (720)
..+|..||-.+......++.+...|. .+. ...+..+.... ....||+|++...+.-. +-..+++.+..... |
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-p 165 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH---LETPVDLILFHAVLEWVADPRSVLQTLWSVLR-P 165 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG---CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEE-E
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh---cCCCceEEEECchhhcccCHHHHHHHHHHHcC-C
Confidence 46899999999999999988887654 232 24454443211 22469999998765432 34578888876541 3
Q ss_pred CCeEEEEe
Q 042954 117 NIPVIMMS 124 (720)
Q Consensus 117 ~ipVIvLT 124 (720)
.-.+++.+
T Consensus 166 gG~l~~~~ 173 (285)
T 4htf_A 166 GGVLSLMF 173 (285)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 33344333
No 452
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=23.04 E-value=81 Score=31.73 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEe-ccC---CC-----------CCHHHHHHHHHhccC
Q 042954 56 IISALLRKCGYRVAAVPDG------LAAWETLKCRPHSIDLVLTE-VEL---PS-----------ISGFALLTLVMEHDV 114 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~A~sg------~eAle~L~~~~~~pDLVLlD-v~M---P~-----------~dGieLL~~Ir~~~~ 114 (720)
.|+++|+..+++|...... ...++.|. .|||||++ +.- .. ..-+++|+...+.
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~-- 117 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN-- 117 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT--
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh--
Confidence 3445555568998886311 11123443 38988875 321 10 3345566655543
Q ss_pred CCCCeEEEEecc
Q 042954 115 CKNIPVIMMSLH 126 (720)
Q Consensus 115 ~p~ipVIvLTs~ 126 (720)
...+|++.++
T Consensus 118 --GGgll~igG~ 127 (256)
T 2gk3_A 118 --GGGLLMIGGY 127 (256)
T ss_dssp --TCEEEEECST
T ss_pred --CCEEEEECCh
Confidence 4578888764
No 453
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=23.01 E-value=1.4e+02 Score=31.50 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=49.0
Q ss_pred cEEEEEecCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHH
Q 042954 42 LRVLLVEADDS-----TRQIISALLRKCGYRVAAVP---------DGLAAWETLKCRPHSIDLVLTEVELPSISGFALLT 107 (720)
Q Consensus 42 ~rVLIVDDd~~-----~r~~L~~lL~~~gyeV~~A~---------sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~ 107 (720)
-|+|||-|... ..+.+...|+..|+++..+. +..++++.+++ ..+|+||- +-|.+-+++.+
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~IIa---vGGGsv~D~AK 115 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRN--DSFDFVVG---LGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTT--SCCSEEEE---EESHHHHHHHH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHh--cCCCEEEE---eCChHHHHHHH
Confidence 58999988733 45777888888787654432 34456666655 45898872 23445566666
Q ss_pred HHHhccCC---------------CCCeEEEEe
Q 042954 108 LVMEHDVC---------------KNIPVIMMS 124 (720)
Q Consensus 108 ~Ir~~~~~---------------p~ipVIvLT 124 (720)
.+...... +.+|+|.+-
T Consensus 116 ~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IP 147 (371)
T 1o2d_A 116 AVAVLLKEKDLSVEDLYDREKVKHWLPVVEIP 147 (371)
T ss_dssp HHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEE
T ss_pred HHHHHHhCCCCCHHHHhcccCCCCCCeEEEEe
Confidence 66554221 567888763
No 454
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=22.71 E-value=1.8e+02 Score=31.63 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.++.+.+ ..+|+|++|.....-.. .++++++++.. .++||+= .-...+.+..++++||+..++
T Consensus 146 ~e~~~~lve--aGvdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHH--HTCSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 344444444 24899999976532222 68888888753 5777752 234578888999999998877
No 455
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=22.62 E-value=1.9e+02 Score=29.09 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=32.2
Q ss_pred ccEEEEEecCHHH--------------HHHHHHHHHhCCCEEEEEC--CHHHHH--HHHHcCCCCceEEEE
Q 042954 41 VLRVLLVEADDST--------------RQIISALLRKCGYRVAAVP--DGLAAW--ETLKCRPHSIDLVLT 93 (720)
Q Consensus 41 ~~rVLIVDDd~~~--------------r~~L~~lL~~~gyeV~~A~--sg~eAl--e~L~~~~~~pDLVLl 93 (720)
.+||||......- ...|.++|+..||+|..+. +....+ +.|. .+||||.
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~----~~DvvV~ 73 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD----RCDVLVW 73 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH----TCSEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh----cCCEEEE
Confidence 3688888764321 2356888998999998865 544322 3453 3899997
No 456
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=22.57 E-value=2.1e+02 Score=29.83 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=38.1
Q ss_pred cEEEEEecCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHH
Q 042954 42 LRVLLVEADDS----TRQIISALLRKCGYRVAAV-------PDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~----~r~~L~~lL~~~gyeV~~A-------~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir 110 (720)
.+|.||-++.. ..+.+++.+++.|++|+.. .+....+..|+. ..+|+||+....+ .+...+++.++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~~-~~~~~~~~~~~ 241 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA--DPPAVIVVTHFYP-QDQALFMNQFM 241 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH--SCCSEEEECCCCH-HHHHHHHHHHT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEccccC-chHHHHHHHHH
Confidence 35555544443 3444555556667776531 355556666655 3478888753221 23566777776
Q ss_pred hcc
Q 042954 111 EHD 113 (720)
Q Consensus 111 ~~~ 113 (720)
+..
T Consensus 242 ~~g 244 (419)
T 3h5l_A 242 TDP 244 (419)
T ss_dssp TSC
T ss_pred HcC
Confidence 654
No 457
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=22.47 E-value=3.6e+02 Score=27.71 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=45.3
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCC-----CHHHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY---RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSI-----SGFALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy---eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~-----dGieLL~~Ir 110 (720)
.+|..||-++.+.+..++.+... ++ .|. ...|+.+.+... ...||+||+|...|.. ...++++.++
T Consensus 141 ~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~ 217 (321)
T 2pt6_A 141 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKIY 217 (321)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCSSSGGGGGSSHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc---CCCceEEEECCcCCCCcchhhhHHHHHHHHH
Confidence 58999999999999988887641 11 232 366776655432 2459999999854421 1157777776
Q ss_pred hcc
Q 042954 111 EHD 113 (720)
Q Consensus 111 ~~~ 113 (720)
+.-
T Consensus 218 ~~L 220 (321)
T 2pt6_A 218 NAL 220 (321)
T ss_dssp HHE
T ss_pred Hhc
Confidence 553
No 458
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=22.40 E-value=5.7e+02 Score=28.09 Aligned_cols=87 Identities=17% Similarity=0.062 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeccC-C--CCCHHHHHHHHHhccCCCCCeEEEEeccCCH
Q 042954 54 RQIISALLRKCGYRVAA-VPDGLAAWETLKCRPHSIDLVLTEVEL-P--SISGFALLTLVMEHDVCKNIPVIMMSLHDSI 129 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~~-A~sg~eAle~L~~~~~~pDLVLlDv~M-P--~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~ 129 (720)
...|....+..|.++.. +.+.+|+...+.. .+|+|=+..+- - ..| ++...+|...-. +++++|.-++-.+.
T Consensus 146 l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~d-l~~~~~L~~~ip-~~~~vIaEsGI~t~ 220 (452)
T 1pii_A 146 YRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSID-LNRTRELAPKLG-HNVTVISESGINTY 220 (452)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEEC-THHHHHHHHHHC-TTSEEEEESCCCCH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCC-HHHHHHHHHhCC-CCCeEEEECCCCCH
Confidence 33444445567888766 8999998877764 37888876532 1 222 555555544321 46889989999999
Q ss_pred HHHHHHHHcCCcEEEeC
Q 042954 130 SMVLKCMLKGAADFLIK 146 (720)
Q Consensus 130 e~~~~Al~~GA~dYL~K 146 (720)
+.+.++.+. |+.+|+-
T Consensus 221 edv~~~~~~-a~avLVG 236 (452)
T 1pii_A 221 AQVRELSHF-ANGFLIG 236 (452)
T ss_dssp HHHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHh-CCEEEEc
Confidence 999999999 9999875
No 459
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.39 E-value=2.8e+02 Score=27.12 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||.+..+.. .. +.++.+.. ..+|-||+-.. ..+ -+.++.++. ..+|||++-..
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~~~-~~~~~~l~~----~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG--KQVDGIVFMGG--NIT-DEHVAEFKR----SPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--CCC-HHHHHHHHH----SSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC--CCC-HHHHHHHHh----cCCCEEEEccc
Confidence 455667778888998876432 22 34555554 34897776432 112 356666654 35899988654
No 460
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=22.23 E-value=4.1e+02 Score=26.37 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=40.4
Q ss_pred EEEEEec-CHHHHHHHHHHH-----HhCC--------CEEEEEC--C-HHHHHHHHHcCCCCceEEEE-eccCCCCCHHH
Q 042954 43 RVLLVEA-DDSTRQIISALL-----RKCG--------YRVAAVP--D-GLAAWETLKCRPHSIDLVLT-EVELPSISGFA 104 (720)
Q Consensus 43 rVLIVDD-d~~~r~~L~~lL-----~~~g--------yeV~~A~--s-g~eAle~L~~~~~~pDLVLl-Dv~MP~~dGie 104 (720)
+|+.||- ++......+..+ +..+ ..+.... + ..+....+.. ..||+||+ |+.....+-..
T Consensus 104 ~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~fD~Ii~~dvl~~~~~~~~ 181 (281)
T 3bzb_A 104 QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGL--QRFQVVLLADLLSFHQAHDA 181 (281)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSC--SSBSEEEEESCCSCGGGHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccC--CCCCEEEEeCcccChHHHHH
Confidence 8999999 899888888877 4333 3333211 1 2222222222 45999997 76544334456
Q ss_pred HHHHHHhcc
Q 042954 105 LLTLVMEHD 113 (720)
Q Consensus 105 LL~~Ir~~~ 113 (720)
+++.++...
T Consensus 182 ll~~l~~~L 190 (281)
T 3bzb_A 182 LLRSVKMLL 190 (281)
T ss_dssp HHHHHHHHB
T ss_pred HHHHHHHHh
Confidence 777776654
No 461
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=22.15 E-value=2.1e+02 Score=29.52 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=60.0
Q ss_pred ccEEEEEecCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCe
Q 042954 41 VLRVLLVEADDSTR-QIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIP 119 (720)
Q Consensus 41 ~~rVLIVDDd~~~r-~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ip 119 (720)
++||.||---..-+ ..+..+....+++|+.+.+.... .+.+-..+ +--++|. . . +++-
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~---------~~g~~~~~------~~~~ll~---~-~--~~vD 83 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT---------VEGVNSYT------TIEAMLD---A-E--PSID 83 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC---------CTTSEEES------SHHHHHH---H-C--TTCC
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh---------hcCCCccC------CHHHHHh---C-C--CCCC
Confidence 58999999876655 34444444447888775544311 12111111 1112222 2 1 2233
Q ss_pred EEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 120 VIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 120 VIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
+|+++.. .-.+.+.+|+++|..=|+-||+ +.+++...++.+-+..
T Consensus 84 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g 132 (330)
T 4ew6_A 84 AVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQG 132 (330)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 4444333 3367788999999999999994 6778877777665544
No 462
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=22.14 E-value=2.1e+02 Score=24.55 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=12.7
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 042954 43 RVLLVEADDSTRQIISALLRKCGYRVAAV 71 (720)
Q Consensus 43 rVLIVDDd~~~r~~L~~lL~~~gyeV~~A 71 (720)
+|+|+-- -.+-..+...|...|++|+.+
T Consensus 8 ~v~I~G~-G~iG~~~a~~l~~~g~~v~~~ 35 (144)
T 2hmt_A 8 QFAVIGL-GRFGGSIVKELHRMGHEVLAV 35 (144)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCCEEE
T ss_pred cEEEECC-CHHHHHHHHHHHHCCCEEEEE
Confidence 4555554 334444444444444544443
No 463
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=21.94 E-value=88 Score=31.23 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCEEEEECCH---HHHHHHHHcCCCCceEEEEeccCCCCCH-------HHHHHHHHhccC--CCCCeEEE
Q 042954 55 QIISALLRKCGYRVAAVPDG---LAAWETLKCRPHSIDLVLTEVELPSISG-------FALLTLVMEHDV--CKNIPVIM 122 (720)
Q Consensus 55 ~~L~~lL~~~gyeV~~A~sg---~eAle~L~~~~~~pDLVLlDv~MP~~dG-------ieLL~~Ir~~~~--~p~ipVIv 122 (720)
..+.+.+++.|..+..+-+. .+.++.+. ..+|+|++=-.-|+..| ++-++++|+... ..+++ |.
T Consensus 96 ~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l---~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~-I~ 171 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILNPETPVEAMKYYI---HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYE-IE 171 (231)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCE-EE
T ss_pred HHHHHHHHHcCCeEEEEEECCCcHHHHHHHH---hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCce-EE
Confidence 34455556677765554333 33333332 23788876444465444 555566665431 12455 55
Q ss_pred EeccCCHHHHHHHHHcCCcEEEeC
Q 042954 123 MSLHDSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 123 LTs~~d~e~~~~Al~~GA~dYL~K 146 (720)
+.+--+.+.+.+++++||+-++.-
T Consensus 172 VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 172 VDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp EESCCSTTTHHHHHHHTCCEEEEC
T ss_pred EECCcCHHHHHHHHHcCCCEEEEc
Confidence 667667788899999999999987
No 464
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=21.88 E-value=1.4e+02 Score=31.31 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 042954 104 ALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHV 160 (720)
Q Consensus 104 eLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~v 160 (720)
+.++.+|+.. |..+|++.. ++.+.+.+|+++|++-.+...+++++|+..++.+
T Consensus 198 ~Av~~~r~~~--p~~~ieVEv--dtlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 198 EALDAAFALN--AEVPVQIEV--ETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp HHHHHHHHHC----CCCEEEE--SSHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEEe--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 6677777765 567777764 3456788999999999999999999999998875
No 465
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=21.77 E-value=4.6e+02 Score=25.88 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=38.9
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHcCCCCceEEEEec
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVA-AVPDGLAAWETLKCRPHSIDLVLTEV 95 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~-~A~sg~eAle~L~~~~~~pDLVLlDv 95 (720)
.+|+-||-++...+.+++.++..|+ .+. ...+..+....+......||+||+|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 5899999999999999999988875 333 35676665443311124599999995
No 466
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=21.72 E-value=1.9e+02 Score=30.06 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPD 73 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~s 73 (720)
.++++|||+..-..- ..+...++..||+|+.+..
T Consensus 9 ~~~~~ili~g~g~~~-~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 9 PAATRVMLLGSGELG-KEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp TTCCEEEEESCSHHH-HHHHHHHHTTTCEEEEEES
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHcCCEEEEEEC
Confidence 356799999887544 4455667778998887654
No 467
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.65 E-value=1.9e+02 Score=28.39 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC--C---HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 53 TRQIISALLRKCGYRVAAVP--D---GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~--s---g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
+...+.+.++..||.+..+. + ..+.++.+.. ..+|-||+--..+ +. +.++.+.+ .+|||++....
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~--~~-~~~~~~~~-----~iPvV~i~~~~ 98 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRF--DT-DELGALAD-----RVPALVVARAS 98 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCC--CH-HHHHHHHT-----TSCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCC--CH-HHHHHHHc-----CCCEEEEcCCC
Confidence 45566777788899877633 2 3456666654 4599888754332 22 56666643 58999886543
No 468
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=21.63 E-value=8.1e+02 Score=27.73 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=68.9
Q ss_pred ccEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEecc--------------CCC
Q 042954 41 VLRVLLVEA----DDSTRQIISALLRKC-GYRVAA--VPDGLAAWETLKCRPHSIDLVLTEVE--------------LPS 99 (720)
Q Consensus 41 ~~rVLIVDD----d~~~r~~L~~lL~~~-gyeV~~--A~sg~eAle~L~~~~~~pDLVLlDv~--------------MP~ 99 (720)
...+|+||- ...+.+.++.+-+.. ...|+. +.+.+.|.++++.. .|.|.+.+. .|.
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aG---AD~vkVGiGpGSiCtTr~v~GvG~PQ 369 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAG---ADGLRIGMGSGSICITQEVMAVGRPQ 369 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTBCCTTTCCSCCCH
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcC---CCEEeecCCCCcccccccccCCCCcH
Confidence 357888883 345555555555444 356655 88999999988753 688876652 333
Q ss_pred CCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCC
Q 042954 100 ISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKP 147 (720)
Q Consensus 100 ~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP 147 (720)
...+--+...... ..+|||.=-+-.....+.+||.+||+-.+.--
T Consensus 370 ~tAi~~~a~~a~~---~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGs 414 (556)
T 4af0_A 370 GTAVYAVAEFASR---FGIPCIADGGIGNIGHIAKALALGASAVMMGG 414 (556)
T ss_dssp HHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHHHHHHH---cCCCEEecCCcCcchHHHHHhhcCCCEEEEch
Confidence 3333223333332 36899998888999999999999999888654
No 469
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=21.56 E-value=93 Score=32.08 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=44.0
Q ss_pred ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 88 IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 88 pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.|++|+-... +.-|+-+++.+.. .+|||+.- ... ..+.+..|-.+|+..|-+.++|...|..++.
T Consensus 285 adv~v~ps~~-e~~~~~~~EAma~-----G~PvI~~~-~~~---~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSEK-ESFGLVLLEAMAC-----GVPCIGTR-VGG---IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCSC-CSCCHHHHHHHHT-----TCCEEEEC-CTT---STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEecccc-CCCchHHHHHHhc-----CCCEEEec-CCC---hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 6777765432 3346677777743 46777543 222 2234556778999999999999999998876
No 470
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=21.55 E-value=1.9e+02 Score=29.18 Aligned_cols=66 Identities=6% Similarity=-0.088 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccC
Q 042954 56 IISALLRKCGYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHD 127 (720)
Q Consensus 56 ~L~~lL~~~gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~ 127 (720)
.+++.|+..|.++.. ..+....+..+.. ..+|+||+.. .+.+...+++.+++.. -.+|+|...+..
T Consensus 157 ~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~--~~~~a~~~~~~~~~~g--~~~~~~~~~~~~ 229 (356)
T 3ipc_A 157 ETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKE--AGVSIIYWGG--LHTEAGLIIRQAADQG--LKAKLVSGDGIV 229 (356)
T ss_dssp HHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHH--TTCCEEEEES--CHHHHHHHHHHHHHHT--CCCEEEECGGGC
T ss_pred HHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEcc--CchHHHHHHHHHHHCC--CCCcEEEecccc
Confidence 445555555543311 1244445555544 2366666432 1223445666666554 345554333333
No 471
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=21.54 E-value=2.2e+02 Score=26.63 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=67.1
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC------EEEE-ECCHHHHHHHHHcCCCCceEEEEeccCCCCC---HHHHHHHHHh
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY------RVAA-VPDGLAAWETLKCRPHSIDLVLTEVELPSIS---GFALLTLVME 111 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy------eV~~-A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d---GieLL~~Ir~ 111 (720)
.+|.-||-++...+..++.+...++ .+.. ..+... +......||+|++...+.-++ -..+++.+..
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~ 129 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY----QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129 (217)
T ss_dssp SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS----CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc----ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHH
Confidence 4899999999999999888865543 1322 333211 111113599999987665443 2577888876
Q ss_pred ccCCCCCeEEEEeccCCHHHHHHHHHcCCcEE--EeCCCCHHHHHHHHHHHHhhccc
Q 042954 112 HDVCKNIPVIMMSLHDSISMVLKCMLKGAADF--LIKPVRRNELRNLWQHVWRRHSL 166 (720)
Q Consensus 112 ~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dY--L~KP~~~~eL~~~l~~vlr~~~~ 166 (720)
.. .+. -+|+++...........+..+...+ ....++.++|...+..+++...+
T Consensus 130 ~L-kpg-G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf 184 (217)
T 3jwh_A 130 FA-QPK-IVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAY 184 (217)
T ss_dssp TT-CCS-EEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSE
T ss_pred Hc-CCC-EEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCc
Confidence 54 244 3666665533222221122221111 12336889999888888776543
No 472
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=21.45 E-value=3.2e+02 Score=27.67 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD-----GLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s-----g~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+.+.+.+.++..||++..+.+ ..++++.+.. ..+|+||+-- +... +.+..+.... |++|+|++...
T Consensus 25 ~~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~--~~~dgIi~~~--~~~~--~~~~~~a~~~--p~~p~v~id~~ 95 (318)
T 2fqx_A 25 VWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD--ENMGLVVACG--SFLV--EAVIETSARF--PKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH--TTCSEEEEES--TTTH--HHHHHHHHHC--TTSCEEEESSC
T ss_pred HHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH--cCCCEEEECC--hhHH--HHHHHHHHHC--CCCEEEEEcCc
Confidence 345677778888998776432 2345666655 3499988732 1121 1233443333 68999999764
No 473
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=21.37 E-value=2.5e+02 Score=27.72 Aligned_cols=86 Identities=10% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHH
Q 042954 59 ALLRKCG-YRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCM 136 (720)
Q Consensus 59 ~lL~~~g-yeV~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al 136 (720)
..|...+ .-|+...+.+++++.++.- ...+++|=+. +-..++.+.++.+++.. +++-|-.=| --+.+.+..|+
T Consensus 12 ~~l~~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~--~k~~~~~~~i~~l~~~~--~~l~vgaGt-vl~~d~~~~A~ 86 (224)
T 1vhc_A 12 EKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEIT--FRSEAAADAIRLLRANR--PDFLIAAGT-VLTAEQVVLAK 86 (224)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEE--TTSTTHHHHHHHHHHHC--TTCEEEEES-CCSHHHHHHHH
T ss_pred HHHHHCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEe--ccCchHHHHHHHHHHhC--cCcEEeeCc-EeeHHHHHHHH
Confidence 3455544 3444455666655444321 1236665554 44567899999888775 554443334 33668888999
Q ss_pred HcCCcEEEeCCCC
Q 042954 137 LKGAADFLIKPVR 149 (720)
Q Consensus 137 ~~GA~dYL~KP~~ 149 (720)
..||+..+.--.+
T Consensus 87 ~aGAd~v~~p~~d 99 (224)
T 1vhc_A 87 SSGADFVVTPGLN 99 (224)
T ss_dssp HHTCSEEECSSCC
T ss_pred HCCCCEEEECCCC
Confidence 9999755443344
No 474
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=21.24 E-value=3e+02 Score=28.97 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCC--CEEEE----ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCG--YRVAA----VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~g--yeV~~----A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
..+.++.+-+..| +.+.. .-+..+|+++++.- ..++|.+++-=+|.. -++.+++|++.. .+||+.==..
T Consensus 183 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l-~~~~i~~iEqP~~~~-d~~~~~~l~~~~---~iPIa~dE~~ 257 (372)
T 3tj4_A 183 DIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAA-KDLDIYWFEEPLWYD-DVTSHARLARNT---SIPIALGEQL 257 (372)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHT-TTSCEEEEESCSCTT-CHHHHHHHHHHC---SSCEEECTTC
T ss_pred HHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHH-hhcCCCEEECCCCch-hHHHHHHHHhhc---CCCEEeCCCc
Confidence 3444444444443 34333 34688888887654 347888887655533 367778888763 5788765555
Q ss_pred CCHHHHHHHHHcCCcEE-EeCCCCHHHHHH
Q 042954 127 DSISMVLKCMLKGAADF-LIKPVRRNELRN 155 (720)
Q Consensus 127 ~d~e~~~~Al~~GA~dY-L~KP~~~~eL~~ 155 (720)
.+.....++++.|+.|+ ..|+...-=|..
T Consensus 258 ~~~~~~~~~i~~~~~d~v~~k~~~~GGit~ 287 (372)
T 3tj4_A 258 YTVDAFRSFIDAGAVAYVQPDVTRLGGITE 287 (372)
T ss_dssp CSHHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred cCHHHHHHHHHcCCCCEEEeCccccCCHHH
Confidence 67788889999986555 477765433433
No 475
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=21.22 E-value=1.5e+02 Score=29.31 Aligned_cols=67 Identities=12% Similarity=-0.028 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPD---G---LAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g---~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+.+.++..||.+..+.. . .+.++.+.. ..+|-||+--..+.. -+.++.+.+ .+|||++-.
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~~--~~~~~~l~~-----~iPvV~i~~ 102 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE--GRVDGVLLQRREDFD--DDMLAAVLE-----GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS--CSSSEEEECCCTTCC--HHHHHHHHT-----TSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCcEEEEecCCCCc--HHHHHHHhC-----CCCEEEECC
Confidence 4566777888888998776432 2 235566655 458887774332221 125666654 478998865
Q ss_pred cC
Q 042954 126 HD 127 (720)
Q Consensus 126 ~~ 127 (720)
..
T Consensus 103 ~~ 104 (303)
T 3kke_A 103 RV 104 (303)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 476
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=21.20 E-value=2.3e+02 Score=29.66 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=45.2
Q ss_pred cEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCC------------CCceEEEEeccCCCCCHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKCGY-RVAA-VPDGLAAWETLKCRP------------HSIDLVLTEVELPSISGFALLT 107 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~gy-eV~~-A~sg~eAle~L~~~~------------~~pDLVLlDv~MP~~dGieLL~ 107 (720)
.+|+-||-++...+..+.-++..|+ .+.. ..+..+.+..+.... ..||+||+|.--.+. .-++++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~-~~~~~~ 314 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL-DSETEK 314 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC-CHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc-HHHHHH
Confidence 5899999999999999888887765 2333 567777665443210 259999999422122 235677
Q ss_pred HHH
Q 042954 108 LVM 110 (720)
Q Consensus 108 ~Ir 110 (720)
.|+
T Consensus 315 ~l~ 317 (369)
T 3bt7_A 315 MVQ 317 (369)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 477
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=21.17 E-value=2.9e+02 Score=26.66 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHhccCCCCCeEEEEec
Q 042954 53 TRQIISALLRKCGYRVAAVP---DGL---AAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~---sg~---eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
+...+.+.++..||.+..+. +.. +.++.+.. ..+|-||+-... .+. .+.++++++. .+|||++-.
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~--~~~~~~~~~~~~~~----~iPvV~i~~ 90 (271)
T 2dri_A 19 LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTD--SDAVGNAVKMANQA----NIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTT--TTEEEEEECCSS--TTTTHHHHHHHHHT----TCCEEEESS
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCC--hHHHHHHHHHHHHC----CCcEEEecC
Confidence 45566777777899887753 222 23444444 459988874322 222 3556667653 589998864
Q ss_pred c
Q 042954 126 H 126 (720)
Q Consensus 126 ~ 126 (720)
.
T Consensus 91 ~ 91 (271)
T 2dri_A 91 Q 91 (271)
T ss_dssp C
T ss_pred C
Confidence 3
No 478
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=21.07 E-value=2e+02 Score=28.45 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=54.4
Q ss_pred HHHHHHHhCC-CEEEEECCHHHHHHHHHcC-CCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEeccCCHHHHH
Q 042954 56 IISALLRKCG-YRVAAVPDGLAAWETLKCR-PHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLHDSISMVL 133 (720)
Q Consensus 56 ~L~~lL~~~g-yeV~~A~sg~eAle~L~~~-~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~ 133 (720)
.+...|...+ +-|+...+.+++++.++.- ...+++|=+. +-..++.++++.+++.. +++-|-.=| --+.+.+.
T Consensus 18 ~~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~--~k~~~~~~~i~~l~~~~--~~~~igagt-vl~~d~~~ 92 (225)
T 1mxs_A 18 RIDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVT--LRSQHGLKAIQVLREQR--PELCVGAGT-VLDRSMFA 92 (225)
T ss_dssp HHHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEE--SSSTHHHHHHHHHHHHC--TTSEEEEEC-CCSHHHHH
T ss_pred HHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEe--cCCccHHHHHHHHHHhC--cccEEeeCe-EeeHHHHH
Confidence 3445555555 3444455666665544321 1236765554 45567889999888765 565554444 34668889
Q ss_pred HHHHcCCcEEEeCCCCH
Q 042954 134 KCMLKGAADFLIKPVRR 150 (720)
Q Consensus 134 ~Al~~GA~dYL~KP~~~ 150 (720)
.|+..||+..+.-.++.
T Consensus 93 ~A~~aGAd~v~~p~~d~ 109 (225)
T 1mxs_A 93 AVEAAGAQFVVTPGITE 109 (225)
T ss_dssp HHHHHTCSSEECSSCCH
T ss_pred HHHHCCCCEEEeCCCCH
Confidence 99999998665443443
No 479
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.99 E-value=3.8e+02 Score=24.54 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=51.7
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeccCCCCC--HHHHHHHHHhccCCCC
Q 042954 43 RVLLVEA--DDSTRQIISALLRKCGYRVAAVP-DGLAAWETLKCRPHSIDLVLTEVELPSIS--GFALLTLVMEHDVCKN 117 (720)
Q Consensus 43 rVLIVDD--d~~~r~~L~~lL~~~gyeV~~A~-sg~eAle~L~~~~~~pDLVLlDv~MP~~d--GieLL~~Ir~~~~~p~ 117 (720)
+|.|+-- ...+...+...|...|..+.... ++.+....+..- .+=|+||+ +...+.+ -+++++.+++. .
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~d~~i~-iS~sG~t~~~~~~~~~ak~~----g 114 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL-RPTDLMIG-VSVWRYLRDTVAALAGAAER----G 114 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC-CTTEEEEE-ECCSSCCHHHHHHHHHHHHT----T
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHHC----C
Confidence 6777653 44566677788888888888877 566554444432 22355554 4445443 45666667664 5
Q ss_pred CeEEEEeccCCHH
Q 042954 118 IPVIMMSLHDSIS 130 (720)
Q Consensus 118 ipVIvLTs~~d~e 130 (720)
++||.+|+..+..
T Consensus 115 ~~vi~IT~~~~s~ 127 (187)
T 3sho_A 115 VPTMALTDSSVSP 127 (187)
T ss_dssp CCEEEEESCTTSH
T ss_pred CCEEEEeCCCCCc
Confidence 8999999876543
No 480
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.94 E-value=2e+02 Score=27.58 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 53 TRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 53 ~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
+...+.+.++..||.+..+.. .. +.++.+.. ..+|-||+--..+. ..+.++.+++. .+|||++...
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~----~iPvV~~~~~ 91 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA--RRCDALFVASCLPP--EDDSYRELQDK----GLPVIAIDRR 91 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCCCS--SCCHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCccc--cHHHHHHHHHc----CCCEEEEccC
Confidence 455677777888998877442 22 24455544 34888887543322 23556677653 5899988654
Q ss_pred C
Q 042954 127 D 127 (720)
Q Consensus 127 ~ 127 (720)
.
T Consensus 92 ~ 92 (272)
T 3o74_A 92 L 92 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 481
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=20.92 E-value=2.6e+02 Score=26.35 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=51.7
Q ss_pred cEEEEEecC--HHHHHHHHHHHHhCCCEEEE-EC---CHHHHHHHHHcCCCCceEE-EEeccC---CCCCHH-HHHHHHH
Q 042954 42 LRVLLVEAD--DSTRQIISALLRKCGYRVAA-VP---DGLAAWETLKCRPHSIDLV-LTEVEL---PSISGF-ALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd--~~~r~~L~~lL~~~gyeV~~-A~---sg~eAle~L~~~~~~pDLV-LlDv~M---P~~dGi-eLL~~Ir 110 (720)
...+.|... ......+.+.++..|..+.. +. +..+.++.+... ..|+| +.=... ++.+.. +.+++++
T Consensus 78 ad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~~~~~~~~~~g~~~~~~~i~~~~ 155 (207)
T 3ajx_A 78 ADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEMHAGLDEQAKPGFDLNGLLAAGE 155 (207)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEEECCHHHHTSTTCCTHHHHHHHH
T ss_pred CCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEEEecccccccCCCchHHHHHHhh
Confidence 344544432 23344455556555666533 32 556644444332 37888 542222 222222 4455554
Q ss_pred hccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 111 EHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 111 ~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.. ++||++.-+- ..+.+.+++++||+.++.
T Consensus 156 ~~----~~pi~v~GGI-~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 156 KA----RVPFSVAGGV-KVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp HH----TSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred CC----CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 32 4677765544 467888999999988764
No 482
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=20.91 E-value=1.9e+02 Score=29.73 Aligned_cols=106 Identities=10% Similarity=0.062 Sum_probs=65.6
Q ss_pred cEEEEEecCHH-----HHHHHHHHHHhCCCE---------EEE--ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHH
Q 042954 42 LRVLLVEADDS-----TRQIISALLRKCGYR---------VAA--VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFAL 105 (720)
Q Consensus 42 ~rVLIVDDd~~-----~r~~L~~lL~~~gye---------V~~--A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieL 105 (720)
.+++||-+.+. +...++++++..|.. |.. .-+.++..+++.. .|++|+--. -+.-|+-+
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~ 290 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLCS 290 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcHH
Confidence 46666654432 345566666555533 332 2345666667654 678887433 23446777
Q ss_pred HHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCc---------------EE--EeCCCCHHHHHHHHHHHHh
Q 042954 106 LTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAA---------------DF--LIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 106 L~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~---------------dY--L~KP~~~~eL~~~l~~vlr 162 (720)
++.+. -.+|||. |.. ....+.+..|.. +| +..|.+.++|...| .++.
T Consensus 291 lEAma-----~G~PvI~-s~~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 291 AEGAV-----LGKPLII-SAV---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHT-----TTCCEEE-ECC---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHH-----cCCCEEE-cCC---CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 77774 3578875 322 344566666666 78 89999999999999 8765
No 483
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=20.90 E-value=3.4e+02 Score=26.20 Aligned_cols=67 Identities=9% Similarity=0.095 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+...++..||++..+.. .. +.++.+.. ..+|-||+-... .+. +.++.+++. ..+|||++..
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~--~~~-~~~~~l~~~---~~iPvV~~~~ 109 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPRF--LSV-DEIDDIIDA---HSQPIMVLNR 109 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH--TTCSEEEEECSS--SCH-HHHHHHHHT---CSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEecCC--CCh-HHHHHHHhc---CCCCEEEEcc
Confidence 4566777888888999877543 22 34555544 348877764322 122 556666651 3589998864
Q ss_pred c
Q 042954 126 H 126 (720)
Q Consensus 126 ~ 126 (720)
.
T Consensus 110 ~ 110 (296)
T 3brq_A 110 R 110 (296)
T ss_dssp C
T ss_pred c
Confidence 3
No 484
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=20.89 E-value=4e+02 Score=27.15 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=47.2
Q ss_pred cEEEEEecCHH----HHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHH
Q 042954 42 LRVLLVEADDS----TRQIISALLRKC--GYRVAA-------VPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTL 108 (720)
Q Consensus 42 ~rVLIVDDd~~----~r~~L~~lL~~~--gyeV~~-------A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~ 108 (720)
.+|.||-++.. ..+.+++.|+.. |++|+. ..+....+..++. ..+|+||+... +.+...+++.
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~--~~~d~v~~~~~--~~~~~~~~~~ 218 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQ--AEPEGLFNVLF--GADLPKFVRE 218 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHH--TCCSEEEECCC--TTHHHHHHHH
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHh--CCCCEEEEcCc--cHHHHHHHHH
Confidence 36666654332 345566677666 676543 1355566666665 34888888653 3456778888
Q ss_pred HHhccCCCCCeEEEEe
Q 042954 109 VMEHDVCKNIPVIMMS 124 (720)
Q Consensus 109 Ir~~~~~p~ipVIvLT 124 (720)
+++.....+++|+-.+
T Consensus 219 ~~~~g~~~~~~i~~~~ 234 (387)
T 3i45_A 219 GRVRGLFAGRQVVSML 234 (387)
T ss_dssp HHHHTSSTTCEEEEEE
T ss_pred HHHcCCCCCCeEEeec
Confidence 8776533456665444
No 485
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=20.87 E-value=2.5e+02 Score=27.81 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.2
Q ss_pred CccEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 042954 40 MVLRVLLVEADDSTRQIISALLRKCGYRVAAVP 72 (720)
Q Consensus 40 m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~ 72 (720)
|+++|||.--.-.+-..|.+.|...|++|+.+.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 456899999988888888888887889887754
No 486
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=20.79 E-value=4.1e+02 Score=26.94 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=33.5
Q ss_pred ccEEEEEecC----HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCC
Q 042954 41 VLRVLLVEAD----DSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELP 98 (720)
Q Consensus 41 ~~rVLIVDDd----~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP 98 (720)
|+|||++-.. -.-...|.+.|.+.|++|+.+.... ..+.+... .+.++.+....+
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~-~~~~~~~~--G~~~~~~~~~~~ 62 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPL-FADEVKAA--GAEVVLYKSEFD 62 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHT--TCEEEECCCGGG
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHH-HHHHHHHc--CCEEEecccccc
Confidence 3489888533 2333456777888899999877643 44455442 366666554333
No 487
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.76 E-value=1.7e+02 Score=28.61 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+.+.++..||.+..+.. .. +.++.+.. ..+|-||+--..+ ..++++++++ ..+|||++..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~---~~~~~~~~~~----~~iPvV~~~~ 95 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE--RRVDGLILAPSEG---EHDYLRTELP----KTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCSS---CCHHHHHSSC----TTSCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCC---ChHHHHHhhc----cCCCEEEEec
Confidence 3456677778888998887543 22 24555555 3489888644322 2345555543 4689998876
Q ss_pred cC
Q 042954 126 HD 127 (720)
Q Consensus 126 ~~ 127 (720)
..
T Consensus 96 ~~ 97 (291)
T 3egc_A 96 EL 97 (291)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 488
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.75 E-value=2.4e+02 Score=28.54 Aligned_cols=64 Identities=13% Similarity=-0.011 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEe
Q 042954 52 STRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMS 124 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLT 124 (720)
.+...+...++..||.+..+.. .. +.++.+.. ..+|-||+--. ..+ -++++.+++. .+|+|++-
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdGiIi~~~--~~~-~~~~~~l~~~----~iPvV~i~ 154 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLS--WRPSGVIIAGL--EHS-EAARAMLDAA----GIPVVEIM 154 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECS--CCC-HHHHHHHHHC----SSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEECC--CCC-HHHHHHHHhC----CCCEEEEe
Confidence 4566777777788999877432 22 24454544 34887777321 122 2667777653 58999884
No 489
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.71 E-value=1.2e+02 Score=30.48 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=63.6
Q ss_pred ccEEEEEecCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHcCCCCceEEEEecc---------CCCCCHHHHHHHH
Q 042954 41 VLRVLLVEADDSTRQIISALLRKC--GYRVAAVPDGLAAWETLKCRPHSIDLVLTEVE---------LPSISGFALLTLV 109 (720)
Q Consensus 41 ~~rVLIVDDd~~~r~~L~~lL~~~--gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~---------MP~~dGieLL~~I 109 (720)
..+++||-+.+ ....++++.+.. ...+...-+..+..+++.. .|++|+-.. ..+.-|+-+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 35777777643 233333333332 2333334455666677654 677776544 1334467777777
Q ss_pred HhccCCCCCeEEEEeccCCHHHHHHHHHc--CCcEEEeCCCCHHHHHHHHHHHHh
Q 042954 110 MEHDVCKNIPVIMMSLHDSISMVLKCMLK--GAADFLIKPVRRNELRNLWQHVWR 162 (720)
Q Consensus 110 r~~~~~p~ipVIvLTs~~d~e~~~~Al~~--GA~dYL~KP~~~~eL~~~l~~vlr 162 (720)
.. .+|||. |.... ..+.+.. |..+|+..| +.++|...|..++.
T Consensus 263 a~-----G~PvI~-s~~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 263 VS-----GTPVVG-TGNGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp HT-----TCCEEE-CCTTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred hc-----CCCEEE-cCCCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 53 467774 33332 4455666 778899999 99999888877543
No 490
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=20.55 E-value=3.3e+02 Score=26.84 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEEec
Q 042954 52 STRQIISALLRKCGYRVAAVPD---GL---AAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMMSL 125 (720)
Q Consensus 52 ~~r~~L~~lL~~~gyeV~~A~s---g~---eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvLTs 125 (720)
.+...+.+.++..||.+..+.. .. +.++.+.. ..+|-||+-...+.. -.++++++++. .+|||++-.
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~-~~~~~~~~~~~----~iPvV~~~~ 91 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQV-LSNVVKEAKQE----GIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSSTTS-CHHHHHHHHTT----TCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChhh-hHHHHHHHHHC----CCeEEEECC
Confidence 4667788888888998877432 22 34555544 348988876543321 13567777653 589998865
Q ss_pred cC
Q 042954 126 HD 127 (720)
Q Consensus 126 ~~ 127 (720)
..
T Consensus 92 ~~ 93 (313)
T 3m9w_A 92 MI 93 (313)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 491
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=20.52 E-value=1.9e+02 Score=30.13 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=55.2
Q ss_pred cccCCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeccCCCCCHHHHHHHHHhccCC
Q 042954 36 FLPRMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSIDLVLTEVELPSISGFALLTLVMEHDVC 115 (720)
Q Consensus 36 ~l~~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~dGieLL~~Ir~~~~~ 115 (720)
.|....|||||+-- -.+-..+...|... ++|..+.-..+.++.+.. ....+-+|+. |--.+.+.|+..
T Consensus 11 ~~~g~~mkilvlGa-G~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~---~~~~~~~d~~----d~~~l~~~~~~~--- 78 (365)
T 3abi_A 11 HIEGRHMKVLILGA-GNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKE---FATPLKVDAS----NFDKLVEVMKEF--- 78 (365)
T ss_dssp -----CCEEEEECC-SHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTT---TSEEEECCTT----CHHHHHHHHTTC---
T ss_pred cccCCccEEEEECC-CHHHHHHHHHHhcC-CCeEEEEcCHHHHHHHhc---cCCcEEEecC----CHHHHHHHHhCC---
Confidence 34445679999987 77888888888654 888877655666666643 2445555652 333444444432
Q ss_pred CCCeEEEEec-cCCHHHHHHHHHcCCcEEEe
Q 042954 116 KNIPVIMMSL-HDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 116 p~ipVIvLTs-~~d~e~~~~Al~~GA~dYL~ 145 (720)
++ ||-+++ +-....+..|++.|++ |+.
T Consensus 79 -Dv-Vi~~~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 79 -EL-VIGALPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp -SE-EEECCCGGGHHHHHHHHHHHTCE-EEE
T ss_pred -CE-EEEecCCcccchHHHHHHhcCcc-eEe
Confidence 33 232332 3345567778888875 665
No 492
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=20.51 E-value=2.1e+02 Score=30.40 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECC
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPD 73 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~s 73 (720)
.++++|||+.....-+. +...+++.||+|+.+..
T Consensus 17 ~~~~~ili~g~g~~g~~-~~~a~~~~G~~v~~v~~ 50 (433)
T 2dwc_A 17 DSAQKILLLGSGELGKE-IAIEAQRLGVEVVAVDR 50 (433)
T ss_dssp TTCCEEEEESCSHHHHH-HHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEEC
Confidence 34579999988765544 44556678999887553
No 493
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=20.49 E-value=1e+02 Score=29.50 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=39.6
Q ss_pred CCccEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCc-eEEEEecc
Q 042954 39 RMVLRVLLVEADDSTRQIISALLRKCGYRVAAVPDGLAAWETLKCRPHSI-DLVLTEVE 96 (720)
Q Consensus 39 ~m~~rVLIVDDd~~~r~~L~~lL~~~gyeV~~A~sg~eAle~L~~~~~~p-DLVLlDv~ 96 (720)
.+.++|||.--.-.+-..|.+.|...|++|+.+.-..+.++.+... .+ .++..|+.
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GASDIVVANLE 75 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TCSEEEECCTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CCceEEEcccH
Confidence 3457999999999998888888888899998854333334444432 37 77888886
No 494
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=20.44 E-value=3e+02 Score=23.77 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHH-HHHHHcCCCC---ceEEEEeccCCCCCHHHHHHHHHhccCCCCCeEEEE
Q 042954 51 DSTRQIISALLRKCGYRVAA---VPDGLAA-WETLKCRPHS---IDLVLTEVELPSISGFALLTLVMEHDVCKNIPVIMM 123 (720)
Q Consensus 51 ~~~r~~L~~lL~~~gyeV~~---A~sg~eA-le~L~~~~~~---pDLVLlDv~MP~~dGieLL~~Ir~~~~~p~ipVIvL 123 (720)
+.....+..++......+.+ |.....| ..+|.. .. ++...+|+.... +|.++...|++......+|.|++
T Consensus 12 ~~~~~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~--~~~~~i~~~~vdid~~~-~~~~~~~~l~~~~g~~tvP~vfi 88 (118)
T 3c1r_A 12 QETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEK--LKVPRSKVLVLQLNDMK-EGADIQAALYEINGQRTVPNIYI 88 (118)
T ss_dssp HHHHHHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTT--SCCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHH--cCCCCCCeEEEECccCC-ChHHHHHHHHHHhCCCCcCEEEE
Confidence 34556677777666555554 3345566 666654 34 778888886532 46666666765544578999987
Q ss_pred ec
Q 042954 124 SL 125 (720)
Q Consensus 124 Ts 125 (720)
-+
T Consensus 89 ~g 90 (118)
T 3c1r_A 89 NG 90 (118)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 495
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=20.43 E-value=1.4e+02 Score=32.22 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=58.5
Q ss_pred ccEEEEEec----CHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHHHHHcCCCCc-e-EEEEeccCCCCCHHHHHHHHHhc
Q 042954 41 VLRVLLVEA----DDSTRQIISALLRK-CGYRVAA-VPDGLAAWETLKCRPHSI-D-LVLTEVELPSISGFALLTLVMEH 112 (720)
Q Consensus 41 ~~rVLIVDD----d~~~r~~L~~lL~~-~gyeV~~-A~sg~eAle~L~~~~~~p-D-LVLlDv~MP~~dGieLL~~Ir~~ 112 (720)
++||.||-- -..-...+..+.+. .+++++. +..-.+..+.+.+. ..+ + -+..| ++.+-+.
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~~~~-----------~~~ll~~ 87 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR-LKLSNATAFPT-----------LESFASS 87 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTCTTCEEESS-----------HHHHHHC
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH-cCCCcceeeCC-----------HHHHhcC
Confidence 479999987 22222334444444 4788765 44333333333221 112 1 12222 2233222
Q ss_pred cCCCCCeEEEEeccC--CHHHHHHHHHcC------CcEEEeCCC--CHHHHHHHHHHHHhh
Q 042954 113 DVCKNIPVIMMSLHD--SISMVLKCMLKG------AADFLIKPV--RRNELRNLWQHVWRR 163 (720)
Q Consensus 113 ~~~p~ipVIvLTs~~--d~e~~~~Al~~G------A~dYL~KP~--~~~eL~~~l~~vlr~ 163 (720)
+++-+|+++... ..+.+..|+++| .+=|+-||+ +.++...+++.+-+.
T Consensus 88 ---~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~ 145 (438)
T 3btv_A 88 ---STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAER 145 (438)
T ss_dssp ---SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTT
T ss_pred ---CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHc
Confidence 234445454433 457788999999 889999995 577777777665443
No 496
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=20.39 E-value=1.4e+02 Score=30.67 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCeEEEEecc--CCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHhhc
Q 042954 117 NIPVIMMSLH--DSISMVLKCMLKGAADFLIKPV--RRNELRNLWQHVWRRH 164 (720)
Q Consensus 117 ~ipVIvLTs~--~d~e~~~~Al~~GA~dYL~KP~--~~~eL~~~l~~vlr~~ 164 (720)
++-+|+++.. ...+.+..|+++|.+=|+-||+ +.++....++.+-+..
T Consensus 66 ~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g 117 (336)
T 2p2s_A 66 SIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETG 117 (336)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 3444444433 3467888999999999999994 5677777766654443
No 497
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=20.32 E-value=1.6e+02 Score=30.49 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=42.4
Q ss_pred cEEEEEecCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHcCCCCceEEEEeccCCCCC--H---HHHHHHHH
Q 042954 42 LRVLLVEADDSTRQIISALLRKC--GY---RVA-AVPDGLAAWETLKCRPHSIDLVLTEVELPSIS--G---FALLTLVM 110 (720)
Q Consensus 42 ~rVLIVDDd~~~r~~L~~lL~~~--gy---eV~-~A~sg~eAle~L~~~~~~pDLVLlDv~MP~~d--G---ieLL~~Ir 110 (720)
.+|..||-++.+.+..++.+... ++ .|. ...|+.+.+.. ....||+||+|.-.|... + .++++.++
T Consensus 133 ~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 133 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDPVGPAESLFGQSYYELLR 209 (314)
T ss_dssp CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC-------------HHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCCCCcchhhhHHHHHHHHH
Confidence 58999999999999988887543 22 233 35676665543 224699999998544211 1 46666666
Q ss_pred hcc
Q 042954 111 EHD 113 (720)
Q Consensus 111 ~~~ 113 (720)
...
T Consensus 210 ~~L 212 (314)
T 2b2c_A 210 DAL 212 (314)
T ss_dssp HHE
T ss_pred hhc
Confidence 553
No 498
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=20.30 E-value=3.1e+02 Score=29.19 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEecc----CC-CCCHHHHHHHHHhccCCCCCeEEEEecc
Q 042954 54 RQIISALLRKCGYRVA--AVPDGLAAWETLKCRPHSIDLVLTEVE----LP-SISGFALLTLVMEHDVCKNIPVIMMSLH 126 (720)
Q Consensus 54 r~~L~~lL~~~gyeV~--~A~sg~eAle~L~~~~~~pDLVLlDv~----MP-~~dGieLL~~Ir~~~~~p~ipVIvLTs~ 126 (720)
.+.++.+-+..+..|. .+.+.++|..+++. ..|.|++.-. +. +..-++++.++++.- .+|||.-.+-
T Consensus 214 ~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~a---Gad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GGI 287 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVKGLLSAEDADRCIAE---GADGVILSNHGGRQLDCAISPMEVLAQSVAKT---GKPVLIDSGF 287 (380)
T ss_dssp HHHHHHHHHHCCSEEEEEEECCHHHHHHHHHT---TCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH---CSCEEECSSC
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc---CCeEEEECCC
Confidence 4566666666666555 37888888887763 3788877321 10 112367788887653 3499988888
Q ss_pred CCHHHHHHHHHcCCcEEEeC
Q 042954 127 DSISMVLKCMLKGAADFLIK 146 (720)
Q Consensus 127 ~d~e~~~~Al~~GA~dYL~K 146 (720)
.+.+.+.+++..||+....-
T Consensus 288 ~~~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 288 RRGSDIVKALALGAEAVLLG 307 (380)
T ss_dssp CSHHHHHHHHHTTCSCEEES
T ss_pred CCHHHHHHHHHhCCcHhheh
Confidence 89999999999999887654
No 499
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=20.29 E-value=5.1e+02 Score=27.38 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCCceEEEEeccCCCCCH-HHHHHHHHhccCCCCCeEEEEeccCCHHHHHHHHHcCCcEEEe
Q 042954 75 LAAWETLKCRPHSIDLVLTEVELPSISG-FALLTLVMEHDVCKNIPVIMMSLHDSISMVLKCMLKGAADFLI 145 (720)
Q Consensus 75 ~eAle~L~~~~~~pDLVLlDv~MP~~dG-ieLL~~Ir~~~~~p~ipVIvLTs~~d~e~~~~Al~~GA~dYL~ 145 (720)
.+.++.+.+ ..+|+|++|........ ++.++++++.. .+|||+- .-...+.+..++++||+...+
T Consensus 107 ~e~a~~l~e--aGad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVE--AGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHH--TTCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHH--cCcCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 444444444 34899999876433333 47788887763 5777762 235678888999999987765
No 500
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=20.29 E-value=1.1e+02 Score=31.03 Aligned_cols=79 Identities=10% Similarity=0.171 Sum_probs=51.6
Q ss_pred HHHHHHHcCCCCceEEEEeccCCCC-C--HHHHHHHHHhccCCC---CCeEEEEeccCCHHHHHHHHHc--CCcEEEe--
Q 042954 76 AAWETLKCRPHSIDLVLTEVELPSI-S--GFALLTLVMEHDVCK---NIPVIMMSLHDSISMVLKCMLK--GAADFLI-- 145 (720)
Q Consensus 76 eAle~L~~~~~~pDLVLlDv~MP~~-d--GieLL~~Ir~~~~~p---~ipVIvLTs~~d~e~~~~Al~~--GA~dYL~-- 145 (720)
+.++.++. .--.|+++|+.-.++ . -++++++|++.- + .+|||.--+-.+.+.+.++++. |+++.+.
T Consensus 162 e~a~~~~~--~a~~il~t~i~~dG~~~G~d~eli~~l~~~~--~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~ 237 (260)
T 2agk_A 162 DTFRELRK--YTNEFLIHAADVEGLCGGIDELLVSKLFEWT--KDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGS 237 (260)
T ss_dssp HHHHHHTT--TCSEEEEEC-------CCCCHHHHHHHHHHH--TTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHH--hcCEEEEEeeccccCcCCCCHHHHHHHHHhh--cccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeC
Confidence 55555543 323566677743222 2 478999998753 3 7899998888899999999987 8877543
Q ss_pred ------CC-CCHHHHHHHHH
Q 042954 146 ------KP-VRRNELRNLWQ 158 (720)
Q Consensus 146 ------KP-~~~~eL~~~l~ 158 (720)
.+ +...+++..++
T Consensus 238 al~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 238 SLDIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp TBGGGTCSSBCHHHHHHHHH
T ss_pred CHHHcCCCCCCHHHHHHHHH
Confidence 34 77777776543
Done!