BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042956
MEAYVKLLILAVILGLAIGSVPTGVNGDGLCRMTKDGLTACQPAVAASNPSPPSTACCSA
LSKADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNLGDSFHC

High Scoring Gene Products

Symbol, full name Information P value
DIR1
DEFECTIVE IN INDUCED RESISTANCE 1 		protein from Arabidopsis thaliana 1.9e-05
AT5G48490 protein from Arabidopsis thaliana 0.00035

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042956
        (103 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006681 - symbol:DIR1 "DEFECTIVE IN INDUCED ...   100  1.9e-05   1
TAIR|locus:2166014 - symbol:AT5G48490 species:3702 "Arabi...    88  0.00035   1


>TAIR|locus:505006681 [details] [associations]
            symbol:DIR1 "DEFECTIVE IN INDUCED RESISTANCE 1"
            species:3702 "Arabidopsis thaliana" [GO:0005576 "extracellular
            region" evidence=ISM] [GO:0006869 "lipid transport" evidence=ISS]
            [GO:0008289 "lipid binding" evidence=ISS] [GO:0005319 "lipid
            transporter activity" evidence=ISS] [GO:0009862 "systemic acquired
            resistance, salicylic acid mediated signaling pathway"
            evidence=IMP] [GO:0005504 "fatty acid binding" evidence=IDA]
            [GO:0008270 "zinc ion binding" evidence=IDA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0006869 InterPro:IPR016140
            SMART:SM00499 SUPFAM:SSF47699 GO:GO:0046872 GO:GO:0048046
            GO:GO:0008270 GO:GO:0005504 GO:GO:0009862 EMBL:AB020745
            EMBL:AF342726 EMBL:AY062857 EMBL:BT006510 EMBL:AY085224
            IPI:IPI00525511 RefSeq:NP_568699.1 UniGene:At.27209 PDB:2RKN
            PDBsum:2RKN ProteinModelPortal:Q8W453 SMR:Q8W453 PaxDb:Q8W453
            PRIDE:Q8W453 EnsemblPlants:AT5G48485.1 GeneID:834904
            KEGG:ath:AT5G48485 TAIR:At5g48485 eggNOG:NOG297830
            HOGENOM:HOG000242259 InParanoid:Q8W453 OMA:LANAPTC PhylomeDB:Q8W453
            ProtClustDB:CLSN2686599 EvolutionaryTrace:Q8W453
            Genevestigator:Q8W453 Pfam:PF14368 Uniprot:Q8W453
        Length = 102

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 26/83 (31%), Positives = 35/83 (42%)

Query:    21 VPTGVNGDGLCRMTKDGLTACQXXXXXXXXXXXXXXXXXXXXKADLQCFCVFKNSRVLSF 80
             V T V  D LC M++D L  C+                     AD  C C +KNS  L  
Sbjct:    21 VDTSVAID-LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGS 79

Query:    81 YGIDFHQAMQLPAKCNLGDSFHC 103
             +G+D   A  LP +C L ++  C
Sbjct:    80 FGVDPELASALPKQCGLANAPTC 102


>TAIR|locus:2166014 [details] [associations]
            symbol:AT5G48490 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0006869 "lipid
            transport" evidence=ISS] [GO:0008289 "lipid binding" evidence=ISS]
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006869
            InterPro:IPR016140 SMART:SM00499 SUPFAM:SSF47699 EMBL:AB020745
            HOGENOM:HOG000242259 ProtClustDB:CLSN2686599 Pfam:PF14368
            EMBL:AY087218 EMBL:BT025701 IPI:IPI00540879 RefSeq:NP_199660.1
            UniGene:At.29845 ProteinModelPortal:Q9LV65 SMR:Q9LV65 STRING:Q9LV65
            PRIDE:Q9LV65 EnsemblPlants:AT5G48490.1 GeneID:834905
            KEGG:ath:AT5G48490 TAIR:At5g48490 InParanoid:Q9LV65 OMA:CGMANED
            PhylomeDB:Q9LV65 Genevestigator:Q9LV65 Uniprot:Q9LV65
        Length = 101

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 22/74 (29%), Positives = 30/74 (40%)

Query:    30 LCRMTKDGLTACQXXXXXXXXXXXXXXXXXXXXKADLQCFCVFKNSRVLSFYGIDFHQAM 89
             LC MT+  L  C                      AD  C C +KNS  L  +G+D   A 
Sbjct:    28 LCGMTQAELNECLPAVSKNNPTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLAS 87

Query:    90 QLPAKCNLGDSFHC 103
              LP +C+L ++  C
Sbjct:    88 SLPKECDLTNAPTC 101


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      103        70   0.00091  102 3  11 22  0.41    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  523 (56 KB)
  Total size of DFA:  100 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.73u 0.12s 5.85t   Elapsed:  00:00:01
  Total cpu time:  5.73u 0.12s 5.85t   Elapsed:  00:00:01
  Start:  Sat May 11 11:23:56 2013   End:  Sat May 11 11:23:57 2013

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