BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042956
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W453|DIR1_ARATH Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana
GN=DIR1 PE=1 SV=1
Length = 102
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 30 LCRMTKDGLTACQPAVAASNPSPPSTACCSALSKADLQCFCVFKNSRVLSFYGIDFHQAM 89
LC M++D L C+PAV+ NP+ PS CC+AL AD C C +KNS L +G+D A
Sbjct: 29 LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELAS 88
Query: 90 QLPAKCNLGDSFHC 103
LP +C L ++ C
Sbjct: 89 ALPKQCGLANAPTC 102
>sp|Q2V3C1|NLTPB_ARATH Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana
GN=LTP11 PE=2 SV=1
Length = 119
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 7 LLILAVILGLAIGSVPTGVNGDGL-CRMTKDGLTACQPAV-AASNPSPPSTACCSALS-- 62
LL++ ++LG+A +G+ + C L C P + A NPSP CC+ L+
Sbjct: 13 LLVITILLGIA-------YHGEAIACPQVNMYLAQCLPYLKAGGNPSP---MCCNGLNSL 62
Query: 63 ------KADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKC--NLGDSF 101
KAD Q C S + GI+ A QLPAKC N+G F
Sbjct: 63 KAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPF 109
>sp|Q38737|FIL1_ANTMA Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2
SV=1
Length = 99
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 1 MEAYVKLLILAVILGLAIGSVPTGVNGDGLCRMTKDGLTACQPAVAASNPSPPSTACCSA 60
M++ V L++L V++ A + T C + L AC P V + PS+ CC+A
Sbjct: 4 MKSIVPLVMLTVLV--AQSQLITQSEAQT-CSASLANLNACAPFVVLGAATTPSSDCCTA 60
Query: 61 LSKADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNL 97
L D +C C A ++PA+CNL
Sbjct: 61 LQSVDHECLCN------------TLRIASRVPAQCNL 85
>sp|Q40227|LIM3_LILLO Protein LIM3 OS=Lilium longiflorum GN=LIM3 PE=3 SV=2
Length = 90
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 31 CRMTKDGLTACQPAVAASNPSPPSTACCSALSKADLQCFCVFKN 74
C GL +C P V N PST CCSA+ + C C N
Sbjct: 28 CSAAIGGLMSCGPYVLPGNQLTPSTQCCSAIQAVNHGCLCETIN 71
>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080
OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1
Length = 182
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 53 PSTACCSALS---KADLQCFC-VFKNSRVLSFYGIDFHQAMQLPAKCNL 97
P CCS L KAD QC C FK+S L ++ +A LPA C L
Sbjct: 66 PEGTCCSGLKTVLKADSQCLCEAFKSSASLGVT-LNITKASTLPAACKL 113
>sp|O24493|MC1_PINRA Male-cone protein 1 OS=Pinus radiata PE=2 SV=1
Length = 92
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 31 CRMTKDGLTACQPAVA-ASNPSPPSTACCSALSKADLQCFCVFKNSRVLSFYGIDFHQAM 89
C D L C AV +SN PS+ CC AL C C K+ R + +
Sbjct: 28 CSNAMDKLAPCTSAVGLSSNGVKPSSECCDALKGTSTSCVC--KSVRAV----------I 75
Query: 90 QLPAKCNL 97
LPAKCNL
Sbjct: 76 SLPAKCNL 83
>sp|Q43748|NLTP_BETVU Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3
SV=1
Length = 117
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 53 PSTACC--------SALSKADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNL 97
PS ACC +A S AD + C S S GI++ +A LP +C +
Sbjct: 49 PSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGV 101
>sp|Q43766|NLTP3_HORVU Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3
PE=3 SV=1
Length = 118
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 46 AASNPSPPSTACCS--------ALSKADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNL 97
A N + P ACCS A S AD Q C S S GI+ + +P KC +
Sbjct: 43 ARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGV 102
Query: 98 GDSF 101
F
Sbjct: 103 SVPF 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,566,074
Number of Sequences: 539616
Number of extensions: 1233352
Number of successful extensions: 4220
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4201
Number of HSP's gapped (non-prelim): 40
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)