Query 042956
Match_columns 103
No_of_seqs 132 out of 1017
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.7 2.1E-18 4.5E-23 103.9 4.7 71 31-103 1-73 (73)
2 cd01960 nsLTP1 nsLTP1: Non-spe 99.7 1.3E-18 2.7E-23 108.2 3.6 72 30-102 2-81 (89)
3 PF14368 LTP_2: Probable lipid 99.7 2.6E-18 5.6E-23 107.2 1.4 77 25-103 16-96 (96)
4 cd01959 nsLTP2 nsLTP2: Non-spe 99.6 2.3E-16 4.9E-21 93.4 4.4 64 35-103 3-66 (66)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.6 8.1E-16 1.8E-20 89.6 3.8 59 38-97 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.3 1.4E-12 3.1E-17 77.5 4.4 73 31-103 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.1 1.8E-12 3.9E-17 80.1 -3.3 68 35-103 12-90 (90)
8 PF07172 GRP: Glycine rich pro 93.9 0.052 1.1E-06 34.1 2.3 22 1-22 1-22 (95)
9 PF14547 Hydrophob_seed: Hydro 93.7 0.034 7.4E-07 34.3 1.2 72 31-103 2-84 (85)
10 cd01958 HPS_like HPS_like: Hyd 92.6 0.23 5E-06 30.7 3.7 73 30-103 3-85 (85)
11 cd00261 AAI_SS AAI_SS: Alpha-A 89.8 0.11 2.4E-06 32.8 0.3 68 36-103 13-108 (110)
12 PF05617 Prolamin_like: Prolam 45.4 11 0.00024 21.6 0.8 21 51-71 26-46 (70)
13 TIGR01165 cbiN cobalt transpor 40.8 32 0.0007 21.5 2.4 15 1-15 1-15 (91)
14 PF15284 PAGK: Phage-encoded v 36.6 23 0.00051 20.4 1.3 21 1-21 1-21 (61)
15 PF10731 Anophelin: Thrombin i 35.5 75 0.0016 18.4 3.2 18 1-18 1-18 (65)
16 PF15240 Pro-rich: Proline-ric 34.6 32 0.0007 24.1 1.9 8 9-16 3-10 (179)
17 CHL00132 psaF photosystem I su 33.6 49 0.0011 23.2 2.7 34 5-44 2-35 (185)
18 PRK12750 cpxP periplasmic repr 33.3 52 0.0011 22.6 2.8 20 1-20 1-20 (170)
19 PF10868 DUF2667: Protein of u 29.1 27 0.00058 21.8 0.7 6 1-6 1-6 (90)
20 PF06411 HdeA: HdeA/HdeB famil 29.1 26 0.00057 21.4 0.7 13 35-47 30-42 (94)
21 PLN00019 photosystem I reactio 26.3 87 0.0019 22.7 3.0 10 35-44 66-75 (223)
22 PF05294 Toxin_5: Scorpion sho 24.0 23 0.00049 17.8 -0.2 16 55-70 16-32 (32)
23 PLN00214 putative protein; Pro 23.6 65 0.0014 20.9 1.8 24 51-74 59-82 (115)
24 PRK00059 prsA peptidylprolyl i 22.5 91 0.002 23.1 2.7 18 1-18 1-18 (336)
25 PRK07021 fliL flagellar basal 20.4 80 0.0017 21.2 1.9 13 4-16 15-27 (162)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.74 E-value=2.1e-18 Score=103.89 Aligned_cols=71 Identities=51% Similarity=0.914 Sum_probs=60.0
Q ss_pred CccccccccCcHHHhhcCCC-CCCChhHHHhhhcCCcccccccccccccccCCCCHHHHhhhhhhcCCCCC-CCC
Q 042956 31 CRMTKDGLTACQPAVAASNP-SPPSTACCSALSKADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNLGDS-FHC 103 (103)
Q Consensus 31 C~~~~~~l~~C~~yl~~~~~-~~Ps~~CC~~l~~~~~~ClC~~l~~~~~~~~~i~~~~a~~Lp~~Cg~~~p-~~c 103 (103)
|+.++..|.+|++|++++++ ..||++||+++|+.+++|+|.+++.... ..||.+||.+||++||+++| ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~--~~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVL--QIIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcc--cccCHHHHHHHHHHcCCCCCCCCC
Confidence 66677789999999997653 4699999999999999999999986433 35999999999999999987 455
No 2
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.74 E-value=1.3e-18 Score=108.22 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=63.0
Q ss_pred CCccccccccCcHHHhhcCCCCCCChhHHHhhhc--------CCcccccccccccccccCCCCHHHHhhhhhhcCCCCCC
Q 042956 30 LCRMTKDGLTACQPAVAASNPSPPSTACCSALSK--------ADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNLGDSF 101 (103)
Q Consensus 30 ~C~~~~~~l~~C~~yl~~~~~~~Ps~~CC~~l~~--------~~~~ClC~~l~~~~~~~~~i~~~~a~~Lp~~Cg~~~p~ 101 (103)
+|.++...|.||++|++|++ ..|+++||+++++ .|++|+|+++++....+.+||.+|+.+||++||+++||
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~-~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGG-PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCC-CCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 68888889999999999876 5899999999997 36789999999866655569999999999999999876
Q ss_pred C
Q 042956 102 H 102 (103)
Q Consensus 102 ~ 102 (103)
+
T Consensus 81 ~ 81 (89)
T cd01960 81 P 81 (89)
T ss_pred C
Confidence 4
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.71 E-value=2.6e-18 Score=107.23 Aligned_cols=77 Identities=32% Similarity=0.544 Sum_probs=49.4
Q ss_pred CCCCCCCccccccccCcHHHhhcCCCCCCChhHHHhhhc---CCcccccccccccccccCCCCHHHHhhhhhhcCCCCCC
Q 042956 25 VNGDGLCRMTKDGLTACQPAVAASNPSPPSTACCSALSK---ADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNLGDSF 101 (103)
Q Consensus 25 ~~~~~~C~~~~~~l~~C~~yl~~~~~~~Ps~~CC~~l~~---~~~~ClC~~l~~~~~~~~~i~~~~a~~Lp~~Cg~~~p~ 101 (103)
+....+|.+++....+|..|++++ ..||++||+++++ .+++|||+++++.....++||.+|+..||++||++.|+
T Consensus 16 ~~~~~~c~~~l~~c~~~~~~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~ 93 (96)
T PF14368_consen 16 AACCCSCANSLLPCCPCLCYVTGG--PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP 93 (96)
T ss_dssp --BTTB-HCCCCHH--HHHHHCC-------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S-
T ss_pred CCCcchhHHHHhccccchhccCCC--CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC
Confidence 345567744333333447888743 5899999999999 59999999999876344689999999999999999875
Q ss_pred -CC
Q 042956 102 -HC 103 (103)
Q Consensus 102 -~c 103 (103)
.|
T Consensus 94 ~~C 96 (96)
T PF14368_consen 94 SKC 96 (96)
T ss_dssp ---
T ss_pred CCC
Confidence 55
No 4
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.64 E-value=2.3e-16 Score=93.41 Aligned_cols=64 Identities=31% Similarity=0.755 Sum_probs=55.1
Q ss_pred cccccCcHHHhhcCCCCCCChhHHHhhhcCCcccccccccccccccCCCCHHHHhhhhhhcCCCCCCCC
Q 042956 35 KDGLTACQPAVAASNPSPPSTACCSALSKADLQCFCVFKNSRVLSFYGIDFHQAMQLPAKCNLGDSFHC 103 (103)
Q Consensus 35 ~~~l~~C~~yl~~~~~~~Ps~~CC~~l~~~~~~ClC~~l~~~~~~~~~i~~~~a~~Lp~~Cg~~~p~~c 103 (103)
..+|.+|++|++++ .+||++||+.+|+.+ .|||++++++....+ ||.++|.+||++||+++| +|
T Consensus 3 ~~~L~~C~~ai~~~--~~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~~-i~~~~A~~l~~~Cgv~~P-~C 66 (66)
T cd01959 3 PTQLSPCLPAILGG--SPPSAACCAKLKEQQ-SCLCQYAKNPSLKQY-VNSPNARKVLAACGVPYP-NC 66 (66)
T ss_pred hhhcccCHHHHhCC--CCCCHHHHHHHhcCC-CCeeeeecCccHHhh-cCcHHHHHHHHHcCCCCC-CC
Confidence 35899999999975 579999999999976 899999998765544 899999999999999986 44
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.60 E-value=8.1e-16 Score=89.63 Aligned_cols=59 Identities=32% Similarity=0.738 Sum_probs=51.3
Q ss_pred ccCcHHHhhcCCCCCCChhHHHhhhc---CCcccccccccccccccCCC-CHHHHhhhhhhcCC
Q 042956 38 LTACQPAVAASNPSPPSTACCSALSK---ADLQCFCVFKNSRVLSFYGI-DFHQAMQLPAKCNL 97 (103)
Q Consensus 38 l~~C~~yl~~~~~~~Ps~~CC~~l~~---~~~~ClC~~l~~~~~~~~~i-~~~~a~~Lp~~Cg~ 97 (103)
|.||++|+++++ ..||++||+++++ .++.|+|+++++.....+++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA-TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC-CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999865 5899999999998 47899999999976665566 79999999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.34 E-value=1.4e-12 Score=77.49 Aligned_cols=73 Identities=27% Similarity=0.600 Sum_probs=59.8
Q ss_pred CccccccccCcHHHhhcCC-CCCCChhHHHhhhcC-CcccccccccccccccCC---CCHHHHhhhhhhcCCCCC-CCC
Q 042956 31 CRMTKDGLTACQPAVAASN-PSPPSTACCSALSKA-DLQCFCVFKNSRVLSFYG---IDFHQAMQLPAKCNLGDS-FHC 103 (103)
Q Consensus 31 C~~~~~~l~~C~~yl~~~~-~~~Ps~~CC~~l~~~-~~~ClC~~l~~~~~~~~~---i~~~~a~~Lp~~Cg~~~p-~~c 103 (103)
|......+.+|.+|+++.. ...|+.+||++++.. +..|+|..++........ ++..++..||+.||+..+ +.|
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~C 79 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTDC 79 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCCC
Confidence 4555667779999998763 357999999999998 999999999976554433 599999999999999987 555
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=99.12 E-value=1.8e-12 Score=80.12 Aligned_cols=68 Identities=29% Similarity=0.602 Sum_probs=57.3
Q ss_pred cccccCcHHHhhcCCCCCCChhHHHhhhcCCccccccccccccccc----------CCCCHHHHhhhhhhcCCCCCC-CC
Q 042956 35 KDGLTACQPAVAASNPSPPSTACCSALSKADLQCFCVFKNSRVLSF----------YGIDFHQAMQLPAKCNLGDSF-HC 103 (103)
Q Consensus 35 ~~~l~~C~~yl~~~~~~~Ps~~CC~~l~~~~~~ClC~~l~~~~~~~----------~~i~~~~a~~Lp~~Cg~~~p~-~c 103 (103)
...+.+|.+|++++. ..|+..||++|+..++.|.|..++...... .+++..+|..||+.||+++|+ .|
T Consensus 12 ~~~l~~c~~~~~~~~-~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~C 90 (90)
T PF00234_consen 12 QVRLSPCLPYLQGGC-QQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTDC 90 (90)
T ss_dssp SSHHHGGHHHHTTSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-G
T ss_pred cccccccHHHHhccc-ccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 345899999999864 378999999999999999999999765542 268999999999999999987 66
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=93.92 E-value=0.052 Score=34.13 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=14.5
Q ss_pred CchhhHHHHHHHHHHHHHhhCc
Q 042956 1 MEAYVKLLILAVILGLAIGSVP 22 (103)
Q Consensus 1 M~~~~~~~~~~~v~~l~~~~~~ 22 (103)
|++++++++.+++++|+|++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 8866666666666666666664
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=93.68 E-value=0.034 Score=34.32 Aligned_cols=72 Identities=22% Similarity=0.528 Sum_probs=45.2
Q ss_pred CccccccccCcHHHhhc----CCCCCCChhHHHhhhc----CCcccccccccccccccCCCCHH-HHhhhhhhcCCCCC-
Q 042956 31 CRMTKDGLTACQPAVAA----SNPSPPSTACCSALSK----ADLQCFCVFKNSRVLSFYGIDFH-QAMQLPAKCNLGDS- 100 (103)
Q Consensus 31 C~~~~~~l~~C~~yl~~----~~~~~Ps~~CC~~l~~----~~~~ClC~~l~~~~~~~~~i~~~-~a~~Lp~~Cg~~~p- 100 (103)
|-.+..+|.-|.+.+.. .+ .++...||+-++. .-..|+|..++.......++|.. ....|-..||...|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g-~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIG-NPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccC-CCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcC
Confidence 43334466778888721 11 3477899999997 34469999999654432233332 45566688998854
Q ss_pred -CCC
Q 042956 101 -FHC 103 (103)
Q Consensus 101 -~~c 103 (103)
|.|
T Consensus 81 gf~C 84 (85)
T PF14547_consen 81 GFTC 84 (85)
T ss_pred CCcC
Confidence 554
No 10
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=92.59 E-value=0.23 Score=30.67 Aligned_cols=73 Identities=21% Similarity=0.475 Sum_probs=44.5
Q ss_pred CCccccccccCcHHHhhcCC---CCCCChhHHHhhhc----CCcccccccccccccccCCCCH-HHHhhhhhhcCCCCC-
Q 042956 30 LCRMTKDGLTACQPAVAASN---PSPPSTACCSALSK----ADLQCFCVFKNSRVLSFYGIDF-HQAMQLPAKCNLGDS- 100 (103)
Q Consensus 30 ~C~~~~~~l~~C~~yl~~~~---~~~Ps~~CC~~l~~----~~~~ClC~~l~~~~~~~~~i~~-~~a~~Lp~~Cg~~~p- 100 (103)
.|-.+...|--|..-+.... ...|..+||.-++. .-..|+|..++.....+ .+|. -+...+-..||...|
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi-~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGI-SINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCc-ccccChhHHHHHHHHcCcCCC
Confidence 35444445666777663211 13577899999997 34569999999644332 2222 344555578999865
Q ss_pred -CCC
Q 042956 101 -FHC 103 (103)
Q Consensus 101 -~~c 103 (103)
|.|
T Consensus 82 gf~C 85 (85)
T cd01958 82 GFTC 85 (85)
T ss_pred CCcC
Confidence 544
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=89.82 E-value=0.11 Score=32.78 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=45.8
Q ss_pred ccccCcHHHhhcCC-CC------------CCChhHHHhhhcCCcccccccccccccccC---------------CCCHHH
Q 042956 36 DGLTACQPAVAASN-PS------------PPSTACCSALSKADLQCFCVFKNSRVLSFY---------------GIDFHQ 87 (103)
Q Consensus 36 ~~l~~C~~yl~~~~-~~------------~Ps~~CC~~l~~~~~~ClC~~l~~~~~~~~---------------~i~~~~ 87 (103)
..|.+|..|+.-.. +. .....||..++..+..|-|..|........ ..-...
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHH
Confidence 35788999985311 00 113579999999999999999975322110 122458
Q ss_pred HhhhhhhcCCCCCCCC
Q 042956 88 AMQLPAKCNLGDSFHC 103 (103)
Q Consensus 88 a~~Lp~~Cg~~~p~~c 103 (103)
|..||..||+..+..|
T Consensus 93 a~~Lp~~C~~~~~~~C 108 (110)
T cd00261 93 AQNLPSMCNLYPPPYC 108 (110)
T ss_pred HHhhchhcCCCCCCCC
Confidence 8999999999874445
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=45.40 E-value=11 Score=21.57 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=17.5
Q ss_pred CCCChhHHHhhhcCCcccccc
Q 042956 51 SPPSTACCSALSKADLQCFCV 71 (103)
Q Consensus 51 ~~Ps~~CC~~l~~~~~~ClC~ 71 (103)
...+.+||.++...+.+|.=.
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHH
Confidence 478899999999988877655
No 13
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=40.80 E-value=32 Score=21.45 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=7.9
Q ss_pred CchhhHHHHHHHHHH
Q 042956 1 MEAYVKLLILAVILG 15 (103)
Q Consensus 1 M~~~~~~~~~~~v~~ 15 (103)
|..++.+..++++++
T Consensus 1 m~~~~~~~ll~~v~~ 15 (91)
T TIGR01165 1 MSMKKTIWLLAAVAA 15 (91)
T ss_pred CCcchhHHHHHHHHH
Confidence 666665544444433
No 14
>PF15284 PAGK: Phage-encoded virulence factor
Probab=36.63 E-value=23 Score=20.42 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=11.4
Q ss_pred CchhhHHHHHHHHHHHHHhhC
Q 042956 1 MEAYVKLLILAVILGLAIGSV 21 (103)
Q Consensus 1 M~~~~~~~~~~~v~~l~~~~~ 21 (103)
|+..|++..++++++.+...+
T Consensus 1 Mkk~ksifL~l~~~LsA~~FS 21 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFS 21 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhh
Confidence 555566655555555544333
No 15
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=35.52 E-value=75 Score=18.39 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=9.9
Q ss_pred CchhhHHHHHHHHHHHHH
Q 042956 1 MEAYVKLLILAVILGLAI 18 (103)
Q Consensus 1 M~~~~~~~~~~~v~~l~~ 18 (103)
|+.+-+++.++.++++++
T Consensus 1 MA~Kl~vialLC~aLva~ 18 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAI 18 (65)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 665555555555555444
No 16
>PF15240 Pro-rich: Proline-rich
Probab=34.57 E-value=32 Score=24.06 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 042956 9 ILAVILGL 16 (103)
Q Consensus 9 ~~~~v~~l 16 (103)
+|+|.|+|
T Consensus 3 lVLLSvAL 10 (179)
T PF15240_consen 3 LVLLSVAL 10 (179)
T ss_pred hHHHHHHH
Confidence 33343333
No 17
>CHL00132 psaF photosystem I subunit III; Validated
Probab=33.64 E-value=49 Score=23.23 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHhhCcCCCCCCCCCccccccccCcHHH
Q 042956 5 VKLLILAVILGLAIGSVPTGVNGDGLCRMTKDGLTACQPA 44 (103)
Q Consensus 5 ~~~~~~~~v~~l~~~~~~~~~~~~~~C~~~~~~l~~C~~y 44 (103)
+++..+++++.+.+...+..+.+ +...|.||.+.
T Consensus 2 rrl~~l~l~~~l~~~~~p~~a~a------d~agLtpCses 35 (185)
T CHL00132 2 KKFNLLFLLLAALLLFNPIAAFA------DVAGLTPCSES 35 (185)
T ss_pred hhHHHHHHHHHHHHhcCCccccc------cccCCccCccC
Confidence 34444445444444444311221 24567777653
No 18
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=33.27 E-value=52 Score=22.58 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=13.5
Q ss_pred CchhhHHHHHHHHHHHHHhh
Q 042956 1 MEAYVKLLILAVILGLAIGS 20 (103)
Q Consensus 1 M~~~~~~~~~~~v~~l~~~~ 20 (103)
|...|+++++.+++.|++..
T Consensus 1 ~~~~kkl~~~~v~~~l~lg~ 20 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLGT 20 (170)
T ss_pred CchHHHHHHHHHHHHHHHHh
Confidence 66778877777666666633
No 19
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=29.09 E-value=27 Score=21.76 Aligned_cols=6 Identities=17% Similarity=0.047 Sum_probs=3.7
Q ss_pred CchhhH
Q 042956 1 MEAYVK 6 (103)
Q Consensus 1 M~~~~~ 6 (103)
|++.|.
T Consensus 1 m~slk~ 6 (90)
T PF10868_consen 1 MGSLKL 6 (90)
T ss_pred CCceEE
Confidence 666654
No 20
>PF06411 HdeA: HdeA/HdeB family; InterPro: IPR010486 HNS (histone-like nucleoid structuring)-dependent expression A (HdeA) protein is a stress response protein found in highly acid resistant bacteria such as Shigella flexneri and Escherichia coli, but which is lacking in mildly acid tolerant bacteria such as Salmonella []. HdeA is one of the most abundant proteins found in the periplasmic space of E. coli, where it is one of a network of proteins that confer an acid resistance phenotype essential for the pathogenesis of enteric bacteria []. HdeA is thought to act as a chaperone, functioning to prevent the aggregation of periplasmic proteins denatured under acidic conditions. The HNS protein, a chromatin-associated protein that influences the gene expression of several environmentally-induced target genes, represses the expression of HdeA. HdeB, which is encoded within the same operon, may form heterodimers with HdeA. HdeA is a single domain protein with an overall fold that is similar to the fold of the N-terminal subdomain of the GluRS anticodon-binding domain. ; PDB: 1BG8_C 1DJ8_C 2XUV_C.
Probab=29.07 E-value=26 Score=21.40 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=8.5
Q ss_pred cccccCcHHHhhc
Q 042956 35 KDGLTACQPAVAA 47 (103)
Q Consensus 35 ~~~l~~C~~yl~~ 47 (103)
..+-+.|.+|+.-
T Consensus 30 ~~~~mTC~eFl~l 42 (94)
T PF06411_consen 30 DPSKMTCKEFLDL 42 (94)
T ss_dssp SGGG-BHHHHHTS
T ss_pred CchhCcHHHHHcC
Confidence 3455789999864
No 21
>PLN00019 photosystem I reaction center subunit III; Provisional
Probab=26.33 E-value=87 Score=22.65 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=6.4
Q ss_pred cccccCcHHH
Q 042956 35 KDGLTACQPA 44 (103)
Q Consensus 35 ~~~l~~C~~y 44 (103)
..+|.||.+.
T Consensus 66 ~agLtPCses 75 (223)
T PLN00019 66 IAGLTPCKES 75 (223)
T ss_pred ccCCccCccC
Confidence 5567777653
No 22
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=23.95 E-value=23 Score=17.76 Aligned_cols=16 Identities=38% Similarity=0.999 Sum_probs=10.8
Q ss_pred hhHHHhhhc-CCccccc
Q 042956 55 TACCSALSK-ADLQCFC 70 (103)
Q Consensus 55 ~~CC~~l~~-~~~~ClC 70 (103)
.+||.+-.+ ..++|+|
T Consensus 16 ~~CCgg~GkC~GpqClC 32 (32)
T PF05294_consen 16 RDCCGGRGKCFGPQCLC 32 (32)
T ss_dssp HHHCTTSEEEETTEEEE
T ss_pred HHHhCCCCeEcCCcccC
Confidence 458877654 5777776
No 23
>PLN00214 putative protein; Provisional
Probab=23.58 E-value=65 Score=20.94 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=17.2
Q ss_pred CCCChhHHHhhhcCCccccccccc
Q 042956 51 SPPSTACCSALSKADLQCFCVFKN 74 (103)
Q Consensus 51 ~~Ps~~CC~~l~~~~~~ClC~~l~ 74 (103)
.++|..||+.+-+.++.|-=..++
T Consensus 59 ~t~s~~CC~~LVk~GK~CH~~LiK 82 (115)
T PLN00214 59 GTLIDPCCNDLVKEGKVCHDTLIK 82 (115)
T ss_pred CCCchHHHHHHHHHhhHHHHHHHH
Confidence 357899999988877766544444
No 24
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=22.50 E-value=91 Score=23.10 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=12.3
Q ss_pred CchhhHHHHHHHHHHHHH
Q 042956 1 MEAYVKLLILAVILGLAI 18 (103)
Q Consensus 1 M~~~~~~~~~~~v~~l~~ 18 (103)
|...|+++..+++.++++
T Consensus 1 ~~~~~~~~~~~~~~~l~~ 18 (336)
T PRK00059 1 MKSIKKLVASLLVGVFIF 18 (336)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 778888777666655544
No 25
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=20.37 E-value=80 Score=21.21 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHH
Q 042956 4 YVKLLILAVILGL 16 (103)
Q Consensus 4 ~~~~~~~~~v~~l 16 (103)
+|+++.+++++++
T Consensus 15 kkkl~ii~l~~l~ 27 (162)
T PRK07021 15 KRKLWLIILILLL 27 (162)
T ss_pred ccchhHHHHHHHH
Confidence 4455444444333
Done!