BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042957
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 41/244 (16%)
Query: 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESD 97
++L +YNPS+ TW L + G + ++GGLL +NS + +
Sbjct: 40 SYLEAYNPSDGTWLR------------LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 87
Query: 98 DFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGT 157
A D YN +N+W+ CAP+SVPR V D IY GG
Sbjct: 88 TDSSALDC-------YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN-- 138
Query: 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217
S E Y PE D+W + M T R ++ V GF DG+ +SAE
Sbjct: 139 -SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF------DGTNRL---NSAE 188
Query: 218 VYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSG-----DCLKAWKGHIESYDGELNM 272
Y + +W ++ M + V + N ++++G D L + +E YD E
Sbjct: 189 CYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNS----VERYDVETET 243
Query: 273 WDEV 276
W V
Sbjct: 244 WTFV 247
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASA-E 161
+ + L+++ YN W R A L VPR A V +Y GG++N +SA +
Sbjct: 35 FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 94
Query: 162 VYHPELDQWTPLPNMSTLRYKC-VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD 220
Y+P +QW+P MS R + VGV G I+ V G S G +H +S E Y+
Sbjct: 95 CYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGG------SHGCIH---HNSVERYE 144
Query: 221 TQAGKWDLVARMWQLDIPPNQIVEVDNRLF 250
+ +W LVA M I V V NRL
Sbjct: 145 PERDEWHLVAPMLTRRIGVG--VAVLNRLL 172
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 101/266 (37%), Gaps = 54/266 (20%)
Query: 21 ILASFCLREPGPRSNI-SNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYI 79
+L + R P N S+ L YNP N WS + + + N + G + +Y
Sbjct: 73 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM-SVPRNRIGVGV----IDGHIYA 127
Query: 80 IGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD 139
+GG H HNS E RY + +EW AP+ R V +
Sbjct: 128 VGG--SHGCIHHNSVE----------------RYEPERDEWHLVAPMLTRRIGVGVAVLN 169
Query: 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199
+Y GG SAE Y+PE ++W + M+T+R I+ G+
Sbjct: 170 RLLYAVGG---FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY- 225
Query: 200 QRADSDGSVHFTERSSAEVYDTQAGKWDLVA----RMWQLDIPPNQIVEVDNRLFSSGDC 255
DG + +S E YD + W VA R L I +Q R++
Sbjct: 226 -----DGQ---DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQ-----GRIY----V 268
Query: 256 LKAWKGH-----IESYDGELNMWDEV 276
L + GH +E YD + + W EV
Sbjct: 269 LGGYDGHTFLDSVECYDPDTDTWSEV 294
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 34 SNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNS 93
+N N Y P N W ++ + N + G + L + +Y GG
Sbjct: 181 TNRLNSAECYYPERNEWRMITAM-----NTIRSGAGVCVLHNCIYAAGGY---------- 225
Query: 94 DESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGG-KSNLF 152
D D+ L V RY+V++ WT AP+ R TV +IYV GG + F
Sbjct: 226 -------DGQDQ-LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF 277
Query: 153 SAKGTASAEVYHPELDQWTPLPNMSTLR 180
S E Y P+ D W+ + M++ R
Sbjct: 278 ----LDSVECYDPDTDTWSEVTRMTSGR 301
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 103/245 (42%), Gaps = 43/245 (17%)
Query: 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESD 97
++L +YNPS+ TW L + G + ++GGLL +NS + +
Sbjct: 39 SYLEAYNPSDGTWLR------------LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86
Query: 98 DFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGT 157
A D YN +N+W+ CAP+SVPR V D IY GG
Sbjct: 87 TDSSALDC-------YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN-- 137
Query: 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGK-IHVVSGFAQRADSDGSVHFTERSSA 216
S E Y PE D+W + M T R VGV + ++ V GF DG+ +SA
Sbjct: 138 -SVERYEPERDEWHLVAPMLTRRIG-VGVAVLNRLLYAVGGF------DGTNRL---NSA 186
Query: 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSG-----DCLKAWKGHIESYDGELN 271
E Y + +W ++ M + V + N ++++G D L + +E YD E
Sbjct: 187 ECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNS----VERYDVETE 241
Query: 272 MWDEV 276
W V
Sbjct: 242 TWTFV 246
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASA-E 161
+ + L+++ YN W R A L VPR A V +Y GG++N +SA +
Sbjct: 34 FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 93
Query: 162 VYHPELDQWTPLPNMSTLRYKC-VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD 220
Y+P +QW+P MS R + VGV G I+ V G S G +H +S E Y+
Sbjct: 94 CYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGG------SHGCIH---HNSVERYE 143
Query: 221 TQAGKWDLVARMWQLDIPPNQIVEVDNRLF 250
+ +W LVA M I V V NRL
Sbjct: 144 PERDEWHLVAPMLTRRIGVG--VAVLNRLL 171
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 101/266 (37%), Gaps = 54/266 (20%)
Query: 21 ILASFCLREPGPRSNI-SNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYI 79
+L + R P N S+ L YNP N WS + + + N + G + +Y
Sbjct: 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM-SVPRNRIGVGV----IDGHIYA 126
Query: 80 IGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD 139
+GG H HNS E RY + +EW AP+ R V +
Sbjct: 127 VGG--SHGCIHHNSVE----------------RYEPERDEWHLVAPMLTRRIGVGVAVLN 168
Query: 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199
+Y GG SAE Y+PE ++W + M+T+R I+ G+
Sbjct: 169 RLLYAVGG---FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGY- 224
Query: 200 QRADSDGSVHFTERSSAEVYDTQAGKWDLVA----RMWQLDIPPNQIVEVDNRLFSSGDC 255
DG + +S E YD + W VA R L I +Q R++
Sbjct: 225 -----DGQ---DQLNSVERYDVETETWTFVAPMKHRRSALGITVHQ-----GRIY----V 267
Query: 256 LKAWKGH-----IESYDGELNMWDEV 276
L + GH +E YD + + W EV
Sbjct: 268 LGGYDGHTFLDSVECYDPDTDTWSEV 293
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 34 SNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNS 93
+N N Y P N W ++ + N + G + L + +Y GG
Sbjct: 180 TNRLNSAECYYPERNEWRMITAM-----NTIRSGAGVCVLHNCIYAAGGY---------- 224
Query: 94 DESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGG-KSNLF 152
D D+ L V RY+V++ WT AP+ R TV +IYV GG + F
Sbjct: 225 -------DGQDQ-LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF 276
Query: 153 SAKGTASAEVYHPELDQWTPLPNMSTLR 180
S E Y P+ D W+ + M++ R
Sbjct: 277 ----LDSVECYDPDTDTWSEVTRMTSGR 300
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 43/245 (17%)
Query: 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESD 97
++L +YNPSN +W L + G + ++GGLL +NS + +
Sbjct: 32 SYLEAYNPSNGSWLR------------LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 79
Query: 98 DFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGT 157
A D YN +N+W+ CA +SVPR V D IY GG
Sbjct: 80 TDSSALDC-------YNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--- 129
Query: 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGK-IHVVSGFAQRADSDGSVHFTERSSA 216
+S E Y PE D+W + M T R VGV + ++ V GF DG+ +SA
Sbjct: 130 SSVERYEPERDEWHLVAPMLTRRIG-VGVAVLNRLLYAVGGF------DGTNRL---NSA 179
Query: 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGH-----IESYDGELN 271
E Y + +W ++ M + V + N ++++G + G +E YD E
Sbjct: 180 ECYYPERNEWRMITPMNTIRSGAGVCV-LHNCIYAAG----GYDGQDQLNSVERYDVETE 234
Query: 272 MWDEV 276
W V
Sbjct: 235 TWTFV 239
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASA-E 161
+ + L+++ YN + W R A L VPR A V +Y GG++N +SA +
Sbjct: 27 FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 86
Query: 162 VYHPELDQWTPLPNMSTLRYKC-VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD 220
Y+P +QW+P +MS R + VGV G I+ V G S G +H SS E Y+
Sbjct: 87 CYNPMTNQWSPCASMSVPRNRIGVGVI-DGHIYAVGG------SHGCIH---HSSVERYE 136
Query: 221 TQAGKWDLVARMWQLDIPPNQIVEVDNRLF 250
+ +W LVA M I V V NRL
Sbjct: 137 PERDEWHLVAPMLTRRIGVG--VAVLNRLL 164
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 101/266 (37%), Gaps = 54/266 (20%)
Query: 21 ILASFCLREPGPRSNI-SNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYI 79
+L + R P N S+ L YNP N WS + + + N + G + +Y
Sbjct: 65 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASM-SVPRNRIGVGV----IDGHIYA 119
Query: 80 IGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD 139
+GG H H+S E RY + +EW AP+ R V +
Sbjct: 120 VGG--SHGCIHHSSVE----------------RYEPERDEWHLVAPMLTRRIGVGVAVLN 161
Query: 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199
+Y GG SAE Y+PE ++W + M+T+R I+ G+
Sbjct: 162 RLLYAVGG---FDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGY- 217
Query: 200 QRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ----LDIPPNQIVEVDNRLFSSGDC 255
DG + +S E YD + W VA M L I +Q +++
Sbjct: 218 -----DGQ---DQLNSVERYDVETETWTFVAPMRHHRSALGITVHQ-----GKIY----V 260
Query: 256 LKAWKGH-----IESYDGELNMWDEV 276
L + GH +E YD + + W EV
Sbjct: 261 LGGYDGHTFLDSVECYDPDSDTWSEV 286
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 34 SNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNS 93
+N N Y P N W ++ + N + G + L + +Y GG
Sbjct: 173 TNRLNSAECYYPERNEWRMITPM-----NTIRSGAGVCVLHNCIYAAGGY---------- 217
Query: 94 DESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGG-KSNLF 152
D D+ L V RY+V++ WT AP+ R TV KIYV GG + F
Sbjct: 218 -------DGQDQ-LNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF 269
Query: 153 SAKGTASAEVYHPELDQWTPLPNMSTLR 180
S E Y P+ D W+ + M++ R
Sbjct: 270 ----LDSVECYDPDSDTWSEVTRMTSGR 293
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 113 YNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP 172
Y + NEW P++ R V N IY AGG S E Y E + WT
Sbjct: 182 YYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN---SVERYDVETETWTF 238
Query: 173 LPNMSTLRYKCVGVT-WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR 231
+ M R +G+T QGKI+V+ G+ DG S E YD + W V R
Sbjct: 239 VAPMRHHR-SALGITVHQGKIYVLGGY------DGHTFL---DSVECYDPDSDTWSEVTR 288
Query: 232 M 232
M
Sbjct: 289 M 289
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 43/245 (17%)
Query: 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESD 97
++L +YNPSN +W L + G + ++GGLL +NS + +
Sbjct: 33 SYLEAYNPSNGSWLR------------LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 80
Query: 98 DFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGT 157
A D YN +N+W+ CA +SVPR V D IY GG
Sbjct: 81 TDSSALDC-------YNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--- 130
Query: 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGK-IHVVSGFAQRADSDGSVHFTERSSA 216
+S E Y PE D+W + M T R VGV + ++ V GF DG+ +SA
Sbjct: 131 SSVERYEPERDEWHLVAPMLTRRIG-VGVAVLNRLLYAVGGF------DGTNRL---NSA 180
Query: 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGH-----IESYDGELN 271
E Y + +W ++ M + V + N ++++G + G +E YD E
Sbjct: 181 ECYYPERNEWRMITPMNTIRSGAGVCV-LHNCIYAAG----GYDGQDQLNSVERYDVETE 235
Query: 272 MWDEV 276
W V
Sbjct: 236 TWTFV 240
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASA-E 161
+ + L+++ YN + W R A L VPR A V +Y GG++N +SA +
Sbjct: 28 FRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 87
Query: 162 VYHPELDQWTPLPNMSTLRYKC-VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD 220
Y+P +QW+P +MS R + VGV G I+ V G S G +H SS E Y+
Sbjct: 88 CYNPMTNQWSPCASMSVPRNRIGVGVI-DGHIYAVGG------SHGCIH---HSSVERYE 137
Query: 221 TQAGKWDLVARMWQLDIPPNQIVEVDNRLF 250
+ +W LVA M I V V NRL
Sbjct: 138 PERDEWHLVAPMLTRRIGVG--VAVLNRLL 165
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 101/266 (37%), Gaps = 54/266 (20%)
Query: 21 ILASFCLREPGPRSNI-SNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYI 79
+L + R P N S+ L YNP N WS + + + N + G + +Y
Sbjct: 66 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASM-SVPRNRIGVGV----IDGHIYA 120
Query: 80 IGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD 139
+GG H H+S E RY + +EW AP+ R V +
Sbjct: 121 VGG--SHGCIHHSSVE----------------RYEPERDEWHLVAPMLTRRIGVGVAVLN 162
Query: 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199
+Y GG SAE Y+PE ++W + M+T+R I+ G+
Sbjct: 163 RLLYAVGG---FDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGY- 218
Query: 200 QRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ----LDIPPNQIVEVDNRLFSSGDC 255
DG + +S E YD + W VA M L I +Q +++
Sbjct: 219 -----DGQ---DQLNSVERYDVETETWTFVAPMRHHRSALGITVHQ-----GKIY----V 261
Query: 256 LKAWKGH-----IESYDGELNMWDEV 276
L + GH +E YD + + W EV
Sbjct: 262 LGGYDGHTFLDSVECYDPDSDTWSEV 287
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 34 SNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNS 93
+N N Y P N W ++ + N + G + L + +Y GG
Sbjct: 174 TNRLNSAECYYPERNEWRMITPM-----NTIRSGAGVCVLHNCIYAAGGY---------- 218
Query: 94 DESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGG-KSNLF 152
D D+ L V RY+V++ WT AP+ R TV KIYV GG + F
Sbjct: 219 -------DGQDQ-LNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF 270
Query: 153 SAKGTASAEVYHPELDQWTPLPNMSTLR 180
S E Y P+ D W+ + M++ R
Sbjct: 271 ----LDSVECYDPDSDTWSEVTRMTSGR 294
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 113 YNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP 172
Y + NEW P++ R V N IY AGG S E Y E + WT
Sbjct: 183 YYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN---SVERYDVETETWTF 239
Query: 173 LPNMSTLRYKCVGVT-WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR 231
+ M R +G+T QGKI+V+ G+ DG S E YD + W V R
Sbjct: 240 VAPMRHHR-SALGITVHQGKIYVLGGY------DGHTFL---DSVECYDPDSDTWSEVTR 289
Query: 232 M 232
M
Sbjct: 290 M 290
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 63 HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTR 122
+V+ G +++S D VY+IGG SD K L + Y+ K EW
Sbjct: 137 YVVYGHTVLSHMDLVYVIGG--------KGSDR---------KCLNKMCVYDPKKFEWKE 179
Query: 123 CAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYK 182
AP+ R F TV D +I VA G ++ T+SAEVY ++W P R
Sbjct: 180 LAPMQTARSLFGATVHDGRIIVAAGVTD---TGLTSSAEVYSITDNKWAPFEAFPQERSS 236
Query: 183 CVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR 231
V+ G ++ + GFA G + TE + Y+ + KW+ V R
Sbjct: 237 LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLR 285
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 41 ASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFV 100
+Y+P+ N S + +NHV S+V+ + V++ GGL +N D +D +
Sbjct: 16 VAYDPAANECYXASLSSQVPKNHV----SLVTKENQVFVAGGLF------YNEDNKEDPM 65
Query: 101 DAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGK 148
AY L+++ +EW PL PR F N IYV GG+
Sbjct: 66 SAY------FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGR 107
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 68 FSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLS 127
F + +S+Y++GG + + D V YD++ S +W PL
Sbjct: 92 FGLGEALNSIYVVGG-----REIKDGERCLDSVMCYDRL----------SFKWGESDPLP 136
Query: 128 VPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187
Y + +YV GGK + K VY P+ +W L M T R
Sbjct: 137 YVVYGHTVLSHMDLVYVIGGKGS--DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV 194
Query: 188 WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW 226
G+I V +G + SSAEVY KW
Sbjct: 195 HDGRIIVAAGVTDTGLT---------SSAEVYSITDNKW 224
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 99/245 (40%), Gaps = 43/245 (17%)
Query: 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESD 97
++L +YNPSN TW L + G + ++GGLL +NS + +
Sbjct: 39 SYLEAYNPSNGTWLR------------LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86
Query: 98 DFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGT 157
A D YN +N+W+ CAP SVPR V D IY GG
Sbjct: 87 TDSSALDC-------YNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHN-- 137
Query: 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGK-IHVVSGFAQRADSDGSVHFTERSSA 216
S E Y PE D+W + T R VGV + ++ V GF DG+ +SA
Sbjct: 138 -SVERYEPERDEWHLVAPXLTRRIG-VGVAVLNRLLYAVGGF------DGTNRL---NSA 186
Query: 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSG-----DCLKAWKGHIESYDGELN 271
E Y + +W + + V + N ++++G D L + +E YD E
Sbjct: 187 ECYYPERNEWRXITAXNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNS----VERYDVETE 241
Query: 272 MWDEV 276
W V
Sbjct: 242 TWTFV 246
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASA-E 161
+ + L+++ YN + W R A L VPR A V +Y GG++N +SA +
Sbjct: 34 FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 93
Query: 162 VYHPELDQWTPLPNMSTLRYKC-VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD 220
Y+P +QW+P S R + VGV G I+ V G S G +H +S E Y+
Sbjct: 94 CYNPXTNQWSPCAPXSVPRNRIGVGVI-DGHIYAVGG------SHGCIH---HNSVERYE 143
Query: 221 TQAGKWDLVARMWQLDIPPNQIVEVDNRLF 250
+ +W LVA I V V NRL
Sbjct: 144 PERDEWHLVAPXLTRRIGVG--VAVLNRLL 171
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 100/266 (37%), Gaps = 54/266 (20%)
Query: 21 ILASFCLREPGPRSNI-SNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYI 79
+L + R P N S+ L YNP N WS + P + + + G ++ +Y
Sbjct: 72 LLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCA--PXSVPRNRI-GVGVID--GHIYA 126
Query: 80 IGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD 139
+GG H HNS E RY + +EW AP R V +
Sbjct: 127 VGG--SHGCIHHNSVE----------------RYEPERDEWHLVAPXLTRRIGVGVAVLN 168
Query: 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199
+Y GG SAE Y+PE ++W + +T+R I+ G+
Sbjct: 169 RLLYAVGG---FDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGY- 224
Query: 200 QRADSDGSVHFTERSSAEVYDTQAGKWDLVA----RMWQLDIPPNQIVEVDNRLFSSGDC 255
DG + +S E YD + W VA R L I +Q R++
Sbjct: 225 -----DGQ---DQLNSVERYDVETETWTFVAPXKHRRSALGITVHQ-----GRIY----V 267
Query: 256 LKAWKGH-----IESYDGELNMWDEV 276
L + GH +E YD + + W EV
Sbjct: 268 LGGYDGHTFLDSVECYDPDTDTWSEV 293
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 28/148 (18%)
Query: 34 SNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNS 93
+N N Y P N W ++ N + G + L + +Y GG
Sbjct: 180 TNRLNSAECYYPERNEWRXIT-----AXNTIRSGAGVCVLHNCIYAAGGY---------- 224
Query: 94 DESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGG-KSNLF 152
D D+ L V RY+V++ WT AP R TV +IYV GG + F
Sbjct: 225 -------DGQDQ-LNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTF 276
Query: 153 SAKGTASAEVYHPELDQWTPLPNMSTLR 180
S E Y P+ D W+ + ++ R
Sbjct: 277 ----LDSVECYDPDTDTWSEVTRXTSGR 300
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 125/327 (38%), Gaps = 63/327 (19%)
Query: 43 YNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAH-NSDESDDFVD 101
Y+P WS +P + + + VSL D +Y+IGG + R+ +S E D+
Sbjct: 36 YDPKTQEWSF---LPSITRKR--RYVASVSLHDRIYVIGG---YDGRSRLSSVECLDYTA 87
Query: 102 AYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAE 161
D V W AP++V R T + IYV+GG ++ S E
Sbjct: 88 DEDGV-------------WYSVAPMNVRRGLAGATTLGDMIYVSGG---FDGSRRHTSME 131
Query: 162 VYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDT 221
Y P +DQW+ L +M T R V G I+ + G+ DG +S E YD
Sbjct: 132 RYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY------DG---LNILNSVEKYDP 182
Query: 222 QAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCL 281
G W V M + D+ G A +E+Y+ + W V
Sbjct: 183 HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT---- 238
Query: 282 QTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAA 341
++++P R Y+ + LY +AGY + +S + +D
Sbjct: 239 -SMTTP---------------RCYVGATVLRGRLYAIAGY----DGNSLLSSIECYDPII 278
Query: 342 KSDAWRSFEPIVEEGEKELCSHCCVVQ 368
D+W E + G + + CV++
Sbjct: 279 --DSW---EVVTSMGTQRCDAGVCVLR 300
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 35 NISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSD 94
NI N + Y+P W++V+ + G + L D +Y++GG AH
Sbjct: 172 NILNSVEKYDPHTGHWTNVTPMATK-----RSGAGVALLNDHIYVVGGF---DGTAH--- 220
Query: 95 ESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIY-VAGGKSNLFS 153
L+ V YN++++ WT ++ PR TV ++Y +AG N
Sbjct: 221 ------------LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL- 267
Query: 154 AKGTASAEVYHPELDQWTPLPNMSTLR 180
+S E Y P +D W + +M T R
Sbjct: 268 ---LSSIECYDPIIDSWEVVTSMGTQR 291
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 161 EVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRA 202
E Y P+ +W+ LP+++ R V+ +I+V+ G+ R+
Sbjct: 34 EKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRS 75
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 111/278 (39%), Gaps = 43/278 (15%)
Query: 11 PTERNPSGHLILASFCLREPGPRSNIS-NWLASYNPSNNTWSHVSHIPD---LLENHVLK 66
P+ R +G + +A G ++ + SY+P + W+ V+++ D L VL
Sbjct: 49 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108
Query: 67 GFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPL 126
G +Y +GG D S L+ V YN+KSNEW AP+
Sbjct: 109 GL--------LYAVGGF----------DGSTG--------LSSVEAYNIKSNEWFHVAPM 142
Query: 127 SVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186
+ R V +Y GG ++ S + ++ E Y+ ++WT + MST R
Sbjct: 143 NTRRSSVGVGVVGGLLYAVGGY-DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG 201
Query: 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVD 246
++ V G DG + R S EVYD W VA M + + V+
Sbjct: 202 VLNNLLYAVGGH------DGPL---VRKSVEVYDPTTNAWRQVADM-NMCRRNAGVCAVN 251
Query: 247 NRLF-SSGDCLKAWKGHIESYDGELNMWDEVNGSCLQT 283
L+ GD +E Y+ + W V+ SC+ T
Sbjct: 252 GLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS-SCMST 288
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 27/139 (19%)
Query: 43 YNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDA 102
YN + N W++++ + G + L + +Y +GG H+ V+
Sbjct: 178 YNATTNEWTYIAEMSTRRS-----GAGVGVLNNLLYAVGG--------HDGPLVRKSVEV 224
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEV 162
YD +N W + A +++ R + + +YV GG + AS E
Sbjct: 225 YDPT----------TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDD---GSCNLASVEY 271
Query: 163 YHPELDQWTPLPN-MSTLR 180
Y+P D+WT + + MST R
Sbjct: 272 YNPTTDKWTVVSSCMSTGR 290
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 43 YNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDA 102
Y+P WS V ++P + H +++S +Y +GG ++DD
Sbjct: 132 YDPVAAKWSEVKNLPIKVYGH-----NVISHNGMIYCLGG------------KTDD---- 170
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKG-TASAE 161
K V YN K +W AP+ PR F + KI +AGG + G +AS E
Sbjct: 171 -KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGG----VTEDGLSASVE 225
Query: 162 VYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199
+ + ++W + R V+ G ++ + GFA
Sbjct: 226 AFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFA 263
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 126/336 (37%), Gaps = 57/336 (16%)
Query: 41 ASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFV 100
+Y+P N + + NH SIV+ + VY++GGL +E N D+
Sbjct: 27 VAYDPMENECYLTALAEQIPRNHS----SIVTQQNQVYVVGGLYVDEE---NKDQP---- 75
Query: 101 DAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASA 160
+ ++ + + S+EW PL R F D+KIYV GK +L + S
Sbjct: 76 -----LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK-DLQTEASLDSV 129
Query: 161 EVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD 220
Y P +W+ + N+ Y ++ G I+ + G V +Y+
Sbjct: 130 LCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF--------IYN 181
Query: 221 TQAGKWDLVA------RMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWD 274
+ G W +A M+ + I +IV + G +E++D + N W+
Sbjct: 182 PKKGDWKDLAPMKTPRSMFGVAIHKGKIV------IAGGVTEDGLSASVEAFDLKTNKWE 235
Query: 275 EVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMV 334
V T P +R +++ + LY + G+ M ++ +
Sbjct: 236 -------------VMTEF-------PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPT 275
Query: 335 HIFDTAAKSDAWRSFEPIVEEGEKELCSHCCVVQLS 370
+ D D + + +++E + C +L+
Sbjct: 276 EVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLN 311
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 37/236 (15%)
Query: 113 YNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP 172
YNV + W PR A + KIY +GG SA E Y + W
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA--LYLFECYDTRTESWHT 132
Query: 173 LPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARM 232
P+M T R V G I+V G +V +S EVYD W + M
Sbjct: 133 KPSMLTQRCSHGMVEANGLIYVCGG-----SLGNNVSGRVLNSCEVYDPATETWTELCPM 187
Query: 233 WQLDIPPNQIVEVDNRLFSSGDCLKAWKG--HIESYDGELNMWDEVNGSCLQTLSSPVST 290
+ + +V V +++F+ G G ++E YD +LN W V SP+
Sbjct: 188 IEAR-KNHGLVFVKDKIFAVGG-QNGLGGLDNVEYYDIKLNEWKMV---------SPM-- 234
Query: 291 SSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAW 346
P + + + A +G+ +Y LAG++ G L HI + ++D W
Sbjct: 235 ---------PWKGVTVKCAAVGSIVYVLAGFQGVGRLG------HILEYNTETDKW 275
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 28/130 (21%)
Query: 43 YNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDA 102
Y+P+ TW+ + + + +NH +V + D ++ +GG N D V+
Sbjct: 174 YDPATETWTELCPMIEARKNH-----GLVFVKDKIFAVGG--------QNGLGGLDNVEY 220
Query: 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEV 162
YD +K NEW +P+ C + +YV G F G +
Sbjct: 221 YD----------IKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAG----FQGVGRLGHIL 266
Query: 163 -YHPELDQWT 171
Y+ E D+W
Sbjct: 267 EYNTETDKWV 276
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGK--SNLFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG +F G EVY P
Sbjct: 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG----EVYSPSSKT 325
Query: 170 WTPLPN 175
WT LPN
Sbjct: 326 WTSLPN 331
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGKSN--LFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG + +F G EVY P
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNG----EVYSPSSKT 308
Query: 170 WTPLPN 175
WT LPN
Sbjct: 309 WTSLPN 314
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGK--SNLFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG +F G EVY P
Sbjct: 275 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNG----EVYSPSSKT 330
Query: 170 WTPLPN 175
WT LPN
Sbjct: 331 WTSLPN 336
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGK--SNLFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG +F G EVY P
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG----EVYSPSSKT 308
Query: 170 WTPLPN 175
WT LPN
Sbjct: 309 WTSLPN 314
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGK--SNLFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG +F G EVY P
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG----EVYSPSSKT 308
Query: 170 WTPLPN 175
WT LPN
Sbjct: 309 WTSLPN 314
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGK--SNLFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG +F G EVY P
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNG----EVYSPSSKT 308
Query: 170 WTPLPN 175
WT LPN
Sbjct: 309 WTSLPN 314
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 YNVKSNEWTRCAPLSVPR-YDFACTVCDNKIYVAGGK--SNLFSAKGTASAEVYHPELDQ 169
Y+ S+ W + V R Y + T+ D +++ GG +F G EVY P
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNG----EVYSPSSKT 308
Query: 170 WTPLPN 175
WT LPN
Sbjct: 309 WTSLPN 314
>pdb|1JB0|B Chain B, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
pdb|3PCQ|B Chain B, Femtosecond X-Ray Protein Nanocrystallography
pdb|4FE1|B Chain B, Improving The Accuracy Of Macromolecular Structure
Refinement At 7 A Resolution
Length = 740
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 260 KGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLA 319
+G E+Y+ L+ + +CL ++S V+ + + I + + TMA + TH ++A
Sbjct: 323 QGIYETYNNSLHFQLGWHLACLGVITSLVAQHMYSLPPYAFIAQDHTTMAALYTHHQYIA 382
Query: 320 GYRMAGELAR-TMSMVHIFDTAAKSDAWRSFEPIVEEGEKELCSHCCVVQL 369
G+ M G A + +V +D A + +++ E + SH V L
Sbjct: 383 GFLMVGAFAHGAIFLVRDYDPAQNKG--NVLDRVLQHKEA-IISHLSWVSL 430
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 20/59 (33%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVS 289
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 117 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 175
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 190 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 231
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 232 ATLDNTLKL 240
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 20/59 (33%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVS 289
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 119 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 177
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 192 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 233
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 234 ATLDNTLKL 242
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 291 SSTNTE 296
N +
Sbjct: 158 VHFNRD 163
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 171 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 212
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 213 ATLDNTLKL 221
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 91 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 150
Query: 291 SSTNTE 296
N +
Sbjct: 151 VHFNRD 156
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 164 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 205
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 206 ATLDNTLKL 214
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 291 SSTNTE 296
N +
Sbjct: 155 VHFNRD 160
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 168 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 209
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 210 ATLDNTLKL 218
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 112 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 171
Query: 291 SSTNTE 296
N +
Sbjct: 172 VHFNRD 177
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 185 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 226
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 227 ATLDNTLKL 235
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Query: 291 SSTNTE 296
N +
Sbjct: 161 VHFNRD 166
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 174 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 215
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 216 ATLDNTLKL 224
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 291 SSTNTE 296
N +
Sbjct: 158 VHFNRD 163
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 171 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 212
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 213 ATLDNTLKL 221
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Query: 291 SSTNTE 296
N +
Sbjct: 155 VHFNRD 160
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 168 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 209
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 210 ATLDNTLKL 218
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 94 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 153
Query: 291 SSTNTE 296
N +
Sbjct: 154 VHFNRD 159
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 167 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 208
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 209 ATLDNTLKL 217
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Query: 291 SSTNTE 296
N +
Sbjct: 161 VHFNRD 166
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 174 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 215
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 216 ATLDNTLKL 224
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 100 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 159
Query: 291 SSTNTE 296
N +
Sbjct: 160 VHFNRD 165
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 173 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 214
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 215 ATLDNTLKL 223
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Query: 291 SSTNTE 296
N +
Sbjct: 158 VHFNRD 163
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 171 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 212
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 213 ATLDNTLKL 221
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Query: 291 SSTNTE 296
N +
Sbjct: 161 VHFNRD 166
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 174 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 215
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 216 ATLDNTLKL 224
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 96 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 155
Query: 291 SSTNTE 296
N +
Sbjct: 156 VHFNRD 161
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 169 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 210
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 211 ATLDNTLKL 219
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPP 300
SYDG++ +W E NG Q V ++S N+ W P
Sbjct: 74 SYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 20/59 (33%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVS 289
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMA 324
SYDG +WD +G CL+TL +D PP+ ++ +P G Y +A
Sbjct: 171 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGK-------YILA 212
Query: 325 GELARTMSM 333
L T+ +
Sbjct: 213 ATLDNTLKL 221
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 20/66 (30%)
Query: 251 SSGDCLKAWKGHIE-----------------SYDGELNMWDEVNGSCLQTL---SSPVST 290
SSG CLK KGH S+D + +WD G CL+TL S PVS
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA 157
Query: 291 SSTNTE 296
N +
Sbjct: 158 VHFNRD 163
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHL 315
SYDG +WD +G CL+TL +D PP+ ++ +P G ++
Sbjct: 171 SYDGLCRIWDTASGQCLKTLID---------DDNPPVS--FVKFSPNGKYI 210
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPP 300
SYDG++ +W E NG Q V ++S N+ W P
Sbjct: 74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPP 300
SYDG++ +W E NG Q V ++S N+ W P
Sbjct: 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPP 300
SYDG++ +W E NG Q V ++S N+ W P
Sbjct: 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPP 300
SYDG++ +W E NG Q V ++S N+ W P
Sbjct: 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLA 319
S D + +WD NG C+ T SPV P++R + +P G YFLA
Sbjct: 93 SADYSIKLWDVSNGQCVATWKSPV-----------PVKR--VEFSPCGN--YFLA 132
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 99 FVDAYDKVLAWVLRYNVKSNEWTRCAPLSVP 129
F+ YD V+A V+ + +++ +WT+ L +P
Sbjct: 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLP 393
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 35/178 (19%)
Query: 36 ISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDE 95
+ +L S++PS WS+ P + G ++V+ GD ++I G R
Sbjct: 166 FNKFLLSFDPSTQQWSYAGESP----WYGTAGAAVVNKGDKTWLINGEAKPGLRT----- 216
Query: 96 SDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVP---RYDFACTVCDNKIYVAGG----- 147
D V L + + +W + AP+S P FA D+ I+ G
Sbjct: 217 --------DAVFE--LDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGS 266
Query: 148 KSNLFSAKGTA--------SAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSG 197
+ N + K A S +++ +W +S R V + W + ++ G
Sbjct: 267 RENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGG 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,166,318
Number of Sequences: 62578
Number of extensions: 517284
Number of successful extensions: 1334
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 159
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)