Query 042957
Match_columns 371
No_of_seqs 167 out of 2112
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.8E-46 6.1E-51 365.7 31.5 284 18-369 285-569 (571)
2 PHA02713 hypothetical protein; 100.0 1.1E-42 2.5E-47 341.6 28.9 261 38-353 272-544 (557)
3 PLN02153 epithiospecifier prot 100.0 9.6E-39 2.1E-43 298.0 31.6 276 45-366 4-309 (341)
4 PLN02193 nitrile-specifier pro 100.0 7.3E-38 1.6E-42 302.7 34.2 267 37-353 134-421 (470)
5 PLN02153 epithiospecifier prot 100.0 6.5E-38 1.4E-42 292.5 31.9 267 35-340 47-339 (341)
6 PHA03098 kelch-like protein; P 100.0 3.9E-38 8.4E-43 311.3 29.8 256 38-354 264-523 (534)
7 PLN02193 nitrile-specifier pro 100.0 4.8E-37 1E-41 297.0 32.7 257 35-341 190-469 (470)
8 KOG4441 Proteins containing BT 100.0 7.5E-38 1.6E-42 306.4 25.3 237 72-367 282-520 (571)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 9.5E-37 2.1E-41 285.5 31.2 253 38-337 29-343 (346)
10 PRK14131 N-acetylneuraminic ac 100.0 1.5E-36 3.3E-41 286.4 30.6 288 2-347 20-373 (376)
11 TIGR03548 mutarot_permut cycli 100.0 1E-36 2.3E-41 282.3 28.5 237 34-325 35-316 (323)
12 PHA02790 Kelch-like protein; P 100.0 2.9E-36 6.4E-41 292.3 28.0 211 70-349 267-477 (480)
13 TIGR03548 mutarot_permut cycli 100.0 1.2E-35 2.5E-40 275.3 29.2 254 64-354 3-291 (323)
14 PHA02713 hypothetical protein; 100.0 4.7E-36 1E-40 294.8 27.5 219 108-367 272-510 (557)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 1.5E-35 3.3E-40 277.3 28.9 264 63-367 6-319 (346)
16 KOG4693 Uncharacterized conser 100.0 4.6E-35 9.9E-40 246.9 21.3 266 21-323 28-313 (392)
17 PRK14131 N-acetylneuraminic ac 100.0 4.3E-34 9.4E-39 269.7 27.1 274 49-367 18-341 (376)
18 KOG4693 Uncharacterized conser 100.0 1.6E-34 3.4E-39 243.6 20.2 262 63-368 12-301 (392)
19 PHA03098 kelch-like protein; P 100.0 1.6E-33 3.4E-38 278.5 27.5 211 34-276 307-518 (534)
20 PHA02790 Kelch-like protein; P 100.0 4.1E-33 8.9E-38 270.3 26.9 193 35-276 284-477 (480)
21 KOG1230 Protein containing rep 100.0 4.2E-29 9.2E-34 222.4 16.9 316 20-353 82-483 (521)
22 KOG0379 Kelch repeat-containin 100.0 5E-28 1.1E-32 233.7 24.8 243 63-353 59-312 (482)
23 KOG0379 Kelch repeat-containin 100.0 3.8E-26 8.2E-31 220.7 26.2 236 39-321 89-341 (482)
24 KOG1230 Protein containing rep 99.9 1.3E-26 2.8E-31 206.6 19.5 249 62-349 64-347 (521)
25 KOG4152 Host cell transcriptio 99.9 4.1E-25 8.8E-30 201.6 18.1 280 46-368 15-331 (830)
26 KOG4152 Host cell transcriptio 99.9 1.6E-23 3.6E-28 191.2 19.7 247 35-324 54-344 (830)
27 COG3055 Uncharacterized protei 99.9 1.8E-20 3.8E-25 165.4 22.8 281 2-340 28-374 (381)
28 COG3055 Uncharacterized protei 99.8 3E-18 6.4E-23 151.5 18.5 260 51-354 28-338 (381)
29 KOG2437 Muskelin [Signal trans 99.5 1.8E-13 3.8E-18 125.8 8.9 273 45-354 236-546 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 7.4E-12 1.6E-16 82.1 6.2 50 64-130 1-50 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 2.1E-11 4.6E-16 79.9 6.8 50 129-180 1-50 (50)
32 KOG2437 Muskelin [Signal trans 99.2 1.1E-11 2.5E-16 114.1 4.2 192 117-324 238-459 (723)
33 PF01344 Kelch_1: Kelch motif; 99.1 2.6E-10 5.7E-15 73.6 4.7 47 64-127 1-47 (47)
34 PF01344 Kelch_1: Kelch motif; 99.0 5.2E-10 1.1E-14 72.2 3.9 47 129-177 1-47 (47)
35 PF13415 Kelch_3: Galactose ox 98.9 2.6E-09 5.6E-14 69.5 6.0 49 74-138 1-49 (49)
36 PF07646 Kelch_2: Kelch motif; 98.9 4.6E-09 1E-13 68.3 6.6 49 129-177 1-49 (49)
37 PF13418 Kelch_4: Galactose ox 98.9 2.9E-09 6.2E-14 69.4 5.3 47 64-127 1-48 (49)
38 PF07646 Kelch_2: Kelch motif; 98.8 9.4E-09 2E-13 66.9 6.2 49 64-127 1-49 (49)
39 PF13415 Kelch_3: Galactose ox 98.8 1.4E-08 3E-13 66.0 6.1 48 139-187 1-48 (49)
40 PF13418 Kelch_4: Galactose ox 98.8 9.8E-09 2.1E-13 66.8 4.6 47 302-353 1-48 (49)
41 smart00612 Kelch Kelch domain. 98.7 2.5E-08 5.4E-13 64.1 5.0 47 76-140 1-47 (47)
42 PF07250 Glyoxal_oxid_N: Glyox 98.7 8.4E-07 1.8E-11 77.5 14.8 168 158-370 46-225 (243)
43 smart00612 Kelch Kelch domain. 98.6 5.3E-08 1.2E-12 62.5 5.0 47 141-190 1-47 (47)
44 PF07250 Glyoxal_oxid_N: Glyox 98.6 6E-06 1.3E-10 72.2 18.9 152 107-287 45-211 (243)
45 TIGR01640 F_box_assoc_1 F-box 98.6 1.6E-05 3.4E-10 70.0 21.0 200 108-342 14-230 (230)
46 TIGR01640 F_box_assoc_1 F-box 98.5 3.7E-05 8E-10 67.7 20.8 200 38-271 14-230 (230)
47 PLN02772 guanylate kinase 98.4 1.7E-06 3.6E-11 80.3 10.8 84 63-168 23-110 (398)
48 PF13854 Kelch_5: Kelch motif 98.4 6.8E-07 1.5E-11 55.9 4.6 40 300-341 2-41 (42)
49 PF13854 Kelch_5: Kelch motif 98.4 1.3E-06 2.9E-11 54.5 5.6 41 126-167 1-41 (42)
50 PLN02772 guanylate kinase 98.3 6.6E-06 1.4E-10 76.4 11.3 85 127-224 22-110 (398)
51 PF03089 RAG2: Recombination a 98.2 0.00022 4.8E-09 62.3 17.9 100 105-204 52-179 (337)
52 PF13360 PQQ_2: PQQ-like domai 98.2 0.0041 8.9E-08 54.6 25.7 213 38-347 3-237 (238)
53 PRK11138 outer membrane biogen 98.1 0.0032 7E-08 60.1 25.6 212 38-348 130-361 (394)
54 PRK11138 outer membrane biogen 98.0 0.0059 1.3E-07 58.3 25.5 220 38-348 79-320 (394)
55 TIGR03300 assembly_YfgL outer 97.9 0.02 4.3E-07 54.3 26.1 174 108-348 155-346 (377)
56 TIGR03300 assembly_YfgL outer 97.8 0.027 5.8E-07 53.4 25.7 212 38-348 75-305 (377)
57 PF03089 RAG2: Recombination a 97.8 0.016 3.5E-07 51.0 20.9 169 28-202 45-232 (337)
58 PF07893 DUF1668: Protein of u 97.6 0.0031 6.6E-08 58.9 15.0 122 138-276 75-214 (342)
59 PF13360 PQQ_2: PQQ-like domai 97.1 0.17 3.6E-06 44.3 20.7 135 108-276 3-149 (238)
60 PF07893 DUF1668: Protein of u 97.1 0.038 8.3E-07 51.6 16.5 121 73-231 75-216 (342)
61 smart00284 OLF Olfactomedin-li 97.0 0.15 3.3E-06 45.0 18.1 150 108-274 48-213 (255)
62 PF02191 OLF: Olfactomedin-lik 97.0 0.095 2.1E-06 46.5 17.0 164 74-276 30-210 (250)
63 TIGR03866 PQQ_ABC_repeats PQQ- 96.8 0.28 6E-06 44.1 19.9 134 108-272 11-148 (300)
64 PF08450 SGL: SMP-30/Gluconola 96.8 0.1 2.3E-06 46.1 16.3 185 38-276 22-220 (246)
65 PF12768 Rax2: Cortical protei 96.4 0.07 1.5E-06 48.1 12.5 112 213-351 15-130 (281)
66 PF12768 Rax2: Cortical protei 96.4 0.38 8.2E-06 43.4 17.0 109 157-277 15-129 (281)
67 KOG2055 WD40 repeat protein [G 96.4 0.16 3.5E-06 47.6 14.7 148 74-272 224-377 (514)
68 PF05096 Glu_cyclase_2: Glutam 96.3 0.49 1.1E-05 42.0 16.7 157 69-276 49-210 (264)
69 KOG2055 WD40 repeat protein [G 95.9 0.33 7.2E-06 45.6 14.2 177 38-270 237-418 (514)
70 PF05096 Glu_cyclase_2: Glutam 95.7 0.63 1.4E-05 41.3 14.8 109 134-270 49-158 (264)
71 KOG0310 Conserved WD40 repeat- 95.5 0.087 1.9E-06 49.6 8.8 136 158-342 48-186 (487)
72 TIGR03866 PQQ_ABC_repeats PQQ- 95.4 1.9 4E-05 38.6 22.0 175 38-273 11-191 (300)
73 TIGR02800 propeller_TolB tol-p 95.4 2.7 5.8E-05 40.2 20.9 146 108-276 214-361 (417)
74 PRK04792 tolB translocation pr 95.3 3.1 6.7E-05 40.5 23.5 102 158-276 242-345 (448)
75 PRK04922 tolB translocation pr 95.2 3.2 6.9E-05 40.2 21.1 145 108-276 228-375 (433)
76 KOG0310 Conserved WD40 repeat- 95.0 1.2 2.6E-05 42.2 14.7 108 136-272 76-187 (487)
77 PF08450 SGL: SMP-30/Gluconola 95.0 2.3 5E-05 37.4 18.5 138 107-272 21-167 (246)
78 PRK00178 tolB translocation pr 95.0 3.7 8.1E-05 39.5 21.2 146 108-276 223-370 (430)
79 PF12217 End_beta_propel: Cata 94.8 2.6 5.6E-05 37.0 17.9 161 65-254 75-257 (367)
80 cd00094 HX Hemopexin-like repe 94.6 2.5 5.5E-05 35.9 16.7 100 140-272 63-178 (194)
81 COG4257 Vgb Streptogramin lyas 94.5 3.2 7E-05 36.9 15.1 184 38-276 124-312 (353)
82 PRK04922 tolB translocation pr 94.4 5.3 0.00011 38.6 22.0 103 157-276 227-331 (433)
83 PRK04792 tolB translocation pr 94.2 5.9 0.00013 38.5 24.2 148 107-276 241-389 (448)
84 PF03178 CPSF_A: CPSF A subuni 94.1 2.4 5.3E-05 39.1 15.0 117 140-276 42-166 (321)
85 KOG0281 Beta-TrCP (transducin 94.1 1.6 3.4E-05 39.9 12.7 141 129-322 235-379 (499)
86 smart00284 OLF Olfactomedin-li 94.0 4.2 9E-05 36.1 15.8 161 63-269 72-252 (255)
87 PLN00181 protein SPA1-RELATED; 93.9 5.9 0.00013 41.6 18.9 130 108-270 555-691 (793)
88 PF10282 Lactonase: Lactonase, 93.8 5.7 0.00012 37.1 19.5 186 39-276 16-231 (345)
89 PRK05137 tolB translocation pr 93.5 7.7 0.00017 37.5 22.3 189 38-276 226-419 (435)
90 PTZ00421 coronin; Provisional 93.5 8.5 0.00018 38.0 22.6 106 140-270 138-246 (493)
91 cd00200 WD40 WD40 domain, foun 93.4 4.8 0.0001 34.9 19.8 104 139-271 62-167 (289)
92 PRK11028 6-phosphogluconolacto 93.2 6.9 0.00015 36.1 23.0 184 38-276 12-214 (330)
93 PRK05137 tolB translocation pr 93.1 8.9 0.00019 37.1 23.2 148 108-276 226-373 (435)
94 PRK04043 tolB translocation pr 92.9 9.5 0.0002 36.8 19.6 148 107-277 212-365 (419)
95 cd00200 WD40 WD40 domain, foun 92.9 5.8 0.00013 34.3 22.2 52 214-271 199-251 (289)
96 PF14870 PSII_BNR: Photosynthe 92.7 7.9 0.00017 35.4 17.4 155 48-253 47-204 (302)
97 COG4257 Vgb Streptogramin lyas 92.7 7.1 0.00015 34.8 17.1 225 39-351 84-314 (353)
98 KOG0291 WD40-repeat-containing 92.6 13 0.00028 37.7 23.4 197 12-276 271-473 (893)
99 PRK13684 Ycf48-like protein; P 92.5 9.1 0.0002 35.6 18.9 136 109-276 153-295 (334)
100 cd00216 PQQ_DH Dehydrogenases 92.4 12 0.00026 36.9 25.3 110 38-172 71-191 (488)
101 cd00216 PQQ_DH Dehydrogenases 92.4 12 0.00026 36.9 23.6 122 69-229 56-192 (488)
102 PRK00178 tolB translocation pr 92.2 11 0.00025 36.2 21.2 103 158-276 223-326 (430)
103 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.1 3.4 7.3E-05 41.1 13.3 123 185-349 65-198 (527)
104 COG4880 Secreted protein conta 92.0 8.4 0.00018 36.5 14.5 191 103-353 401-601 (603)
105 cd00094 HX Hemopexin-like repe 91.9 7.1 0.00015 33.1 16.8 152 134-342 11-177 (194)
106 PF02191 OLF: Olfactomedin-lik 91.7 9.2 0.0002 34.0 16.5 140 107-269 88-247 (250)
107 PF08268 FBA_3: F-box associat 91.6 2.3 5E-05 33.4 9.5 81 186-276 2-87 (129)
108 PRK02889 tolB translocation pr 91.5 14 0.0003 35.7 23.1 145 108-276 220-367 (427)
109 KOG0266 WD40 repeat-containing 91.1 16 0.00035 35.6 18.7 137 108-271 225-366 (456)
110 KOG3545 Olfactomedin and relat 90.8 11 0.00023 33.1 15.8 153 107-276 41-209 (249)
111 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.4 10 0.00022 37.7 14.8 118 134-275 64-197 (527)
112 PF14870 PSII_BNR: Photosynthe 90.3 14 0.00031 33.8 17.2 180 41-276 84-268 (302)
113 PRK03629 tolB translocation pr 90.2 19 0.0004 34.8 24.6 146 108-276 223-370 (429)
114 TIGR02800 propeller_TolB tol-p 89.9 18 0.0004 34.4 21.7 147 38-231 214-363 (417)
115 PF03178 CPSF_A: CPSF A subuni 89.6 9 0.00019 35.3 13.0 122 38-197 62-190 (321)
116 KOG0291 WD40-repeat-containing 89.1 28 0.00061 35.5 16.1 82 40-149 416-499 (893)
117 PRK03629 tolB translocation pr 89.1 22 0.00049 34.3 21.1 147 107-276 178-326 (429)
118 PLN00033 photosystem II stabil 88.6 23 0.0005 33.8 19.4 92 164-276 266-363 (398)
119 PF10282 Lactonase: Lactonase, 88.5 21 0.00046 33.2 16.8 144 107-276 165-331 (345)
120 COG4946 Uncharacterized protei 88.2 19 0.00041 34.6 13.6 82 106-197 57-146 (668)
121 COG1520 FOG: WD40-like repeat 88.2 23 0.0005 33.3 20.1 139 109-275 79-225 (370)
122 PF13859 BNR_3: BNR repeat-lik 87.6 23 0.0005 32.6 14.0 194 69-288 3-220 (310)
123 KOG0316 Conserved WD40 repeat- 87.5 19 0.0004 31.5 14.6 94 108-226 81-177 (307)
124 PRK11028 6-phosphogluconolacto 87.3 24 0.00051 32.5 24.9 10 158-167 148-157 (330)
125 KOG2321 WD40 repeat protein [G 86.9 5 0.00011 39.2 9.3 98 107-225 154-261 (703)
126 PTZ00420 coronin; Provisional 86.9 37 0.00079 34.2 19.3 105 140-270 138-249 (568)
127 KOG0316 Conserved WD40 repeat- 86.6 21 0.00046 31.1 14.9 178 38-272 81-260 (307)
128 PLN02919 haloacid dehalogenase 86.5 54 0.0012 35.8 24.1 113 139-277 694-841 (1057)
129 PRK02889 tolB translocation pr 86.4 33 0.0007 33.1 20.0 147 107-276 175-323 (427)
130 PF06433 Me-amine-dh_H: Methyl 86.0 20 0.00042 33.3 12.3 130 38-197 17-155 (342)
131 PLN00181 protein SPA1-RELATED; 85.6 51 0.0011 34.7 22.8 105 139-271 629-740 (793)
132 PRK01742 tolB translocation pr 85.6 36 0.00078 32.8 19.5 138 109-276 229-368 (429)
133 PLN02919 haloacid dehalogenase 85.4 61 0.0013 35.4 19.1 68 188-273 813-892 (1057)
134 PRK04043 tolB translocation pr 85.3 37 0.00079 32.7 20.1 192 38-276 213-407 (419)
135 PLN00033 photosystem II stabil 84.9 37 0.00081 32.4 22.0 74 67-173 139-214 (398)
136 KOG0646 WD40 repeat protein [G 84.3 39 0.00085 32.3 14.6 59 67-150 84-145 (476)
137 PF08268 FBA_3: F-box associat 82.9 16 0.00034 28.6 9.3 66 106-173 18-87 (129)
138 PTZ00421 coronin; Provisional 82.6 53 0.0011 32.4 20.9 146 108-276 148-297 (493)
139 PF12217 End_beta_propel: Cata 81.5 17 0.00037 32.2 9.4 139 45-201 112-261 (367)
140 KOG0289 mRNA splicing factor [ 81.4 40 0.00087 32.1 12.3 115 132-276 350-469 (506)
141 KOG0265 U5 snRNP-specific prot 81.4 38 0.00082 30.7 11.7 62 139-228 58-126 (338)
142 PTZ00420 coronin; Provisional 81.2 64 0.0014 32.5 20.3 141 108-276 148-300 (568)
143 TIGR03074 PQQ_membr_DH membran 80.9 42 0.00091 35.1 13.8 41 308-349 312-353 (764)
144 PRK10115 protease 2; Provision 80.5 76 0.0016 32.9 18.8 151 106-278 245-403 (686)
145 PF02897 Peptidase_S9_N: Proly 80.3 55 0.0012 31.2 17.4 145 107-276 251-411 (414)
146 PF06433 Me-amine-dh_H: Methyl 80.2 50 0.0011 30.6 15.1 68 33-122 62-132 (342)
147 TIGR02658 TTQ_MADH_Hv methylam 80.1 53 0.0011 30.8 22.3 67 34-122 73-142 (352)
148 TIGR03074 PQQ_membr_DH membran 80.0 82 0.0018 33.0 21.0 79 184-275 311-391 (764)
149 KOG0315 G-protein beta subunit 79.9 42 0.00092 29.6 17.1 133 108-270 61-198 (311)
150 KOG2048 WD40 repeat protein [G 78.5 78 0.0017 31.9 14.3 113 138-276 392-512 (691)
151 KOG4378 Nuclear protein COP1 [ 78.5 59 0.0013 31.6 12.6 53 215-274 188-244 (673)
152 PF02239 Cytochrom_D1: Cytochr 78.5 50 0.0011 31.2 12.6 182 38-276 16-209 (369)
153 PF07433 DUF1513: Protein of u 77.1 59 0.0013 29.7 19.0 162 66-254 6-180 (305)
154 KOG3545 Olfactomedin and relat 76.9 52 0.0011 29.0 12.5 158 65-268 68-245 (249)
155 PLN03215 ascorbic acid mannose 76.0 72 0.0016 30.1 17.5 99 47-177 189-305 (373)
156 PLN03215 ascorbic acid mannose 75.5 62 0.0013 30.6 12.0 92 167-276 189-301 (373)
157 KOG1036 Mitotic spindle checkp 74.7 67 0.0014 29.2 16.0 131 108-271 35-165 (323)
158 PF02897 Peptidase_S9_N: Proly 74.7 80 0.0017 30.1 24.7 144 107-269 201-357 (414)
159 PF13859 BNR_3: BNR repeat-lik 74.3 72 0.0016 29.3 16.2 188 133-353 2-217 (310)
160 KOG0285 Pleiotropic regulator 74.3 76 0.0016 29.6 16.0 37 305-351 363-399 (460)
161 KOG2048 WD40 repeat protein [G 74.0 1E+02 0.0022 31.1 13.4 134 109-272 406-551 (691)
162 PF14583 Pectate_lyase22: Olig 73.8 73 0.0016 30.2 12.0 226 38-323 60-304 (386)
163 PF13088 BNR_2: BNR repeat-lik 72.6 69 0.0015 28.4 15.3 151 112-276 82-249 (275)
164 KOG0296 Angio-associated migra 72.6 83 0.0018 29.3 14.2 108 133-272 68-181 (399)
165 KOG0266 WD40 repeat-containing 72.5 99 0.0021 30.1 16.9 155 68-270 250-410 (456)
166 COG0823 TolB Periplasmic compo 71.5 1E+02 0.0022 29.8 13.5 106 157-278 261-368 (425)
167 COG2706 3-carboxymuconate cycl 71.0 89 0.0019 29.0 23.9 64 157-232 166-233 (346)
168 PRK13684 Ycf48-like protein; P 70.8 90 0.002 29.0 19.9 171 46-276 33-209 (334)
169 KOG0315 G-protein beta subunit 69.0 83 0.0018 27.9 15.6 109 139-276 51-161 (311)
170 PF09910 DUF2139: Uncharacteri 68.3 95 0.0021 28.3 17.2 165 121-318 26-219 (339)
171 TIGR02658 TTQ_MADH_Hv methylam 67.2 1.1E+02 0.0024 28.7 21.2 107 38-172 27-142 (352)
172 KOG1446 Histone H3 (Lys4) meth 64.1 1.2E+02 0.0025 27.7 18.8 101 38-172 36-136 (311)
173 PF09910 DUF2139: Uncharacteri 63.9 1.2E+02 0.0025 27.7 17.6 138 107-270 77-231 (339)
174 KOG2321 WD40 repeat protein [G 63.2 90 0.0019 31.0 10.3 53 158-226 155-209 (703)
175 KOG0649 WD40 repeat protein [G 63.2 1.1E+02 0.0023 27.1 15.6 128 119-276 100-242 (325)
176 KOG1036 Mitotic spindle checkp 63.0 1.2E+02 0.0026 27.6 13.0 93 107-225 74-166 (323)
177 COG3823 Glutamine cyclotransfe 62.5 81 0.0018 27.2 8.8 75 184-276 50-124 (262)
178 KOG0281 Beta-TrCP (transducin 62.5 45 0.00097 30.8 7.8 90 158-270 340-429 (499)
179 KOG0649 WD40 repeat protein [G 61.4 1.2E+02 0.0025 26.9 15.2 155 49-256 100-265 (325)
180 COG1520 FOG: WD40-like repeat 61.0 1.5E+02 0.0032 27.9 21.8 185 39-276 79-277 (370)
181 PF14781 BBS2_N: Ciliary BBSom 59.4 46 0.00099 26.4 6.5 68 246-348 63-133 (136)
182 KOG0293 WD40 repeat-containing 58.0 1.8E+02 0.0038 27.8 11.8 130 39-223 292-426 (519)
183 PRK01029 tolB translocation pr 56.7 1.9E+02 0.0042 27.9 18.5 29 246-276 338-366 (428)
184 KOG3881 Uncharacterized conser 55.5 1.9E+02 0.004 27.3 11.5 93 158-271 226-322 (412)
185 PF13570 PQQ_3: PQQ-like domai 55.4 24 0.00051 21.0 3.5 25 241-270 16-40 (40)
186 PF08662 eIF2A: Eukaryotic tra 53.3 1.4E+02 0.003 25.2 9.8 80 108-197 83-162 (194)
187 KOG0639 Transducin-like enhanc 51.9 48 0.001 32.3 6.4 69 187-273 474-543 (705)
188 PF07734 FBA_1: F-box associat 51.3 1.3E+02 0.0029 24.4 12.1 82 186-276 2-90 (164)
189 KOG0286 G-protein beta subunit 51.3 1.9E+02 0.0042 26.3 19.6 173 38-256 119-294 (343)
190 PF02239 Cytochrom_D1: Cytochr 51.0 2.2E+02 0.0048 26.9 14.0 196 107-353 149-356 (369)
191 KOG0294 WD40 repeat-containing 50.3 43 0.00094 30.5 5.6 83 223-317 28-111 (362)
192 KOG0265 U5 snRNP-specific prot 49.9 2E+02 0.0044 26.2 11.7 61 74-171 58-125 (338)
193 KOG0318 WD40 repeat stress pro 47.8 2.9E+02 0.0063 27.3 20.6 79 177-273 441-521 (603)
194 COG3823 Glutamine cyclotransfe 47.2 1.9E+02 0.0041 25.0 15.9 158 68-276 49-214 (262)
195 KOG0305 Anaphase promoting com 44.6 3.2E+02 0.0069 26.9 14.9 103 139-270 228-332 (484)
196 PF15525 DUF4652: Domain of un 44.4 2E+02 0.0042 24.4 11.4 81 146-235 76-161 (200)
197 KOG0285 Pleiotropic regulator 43.9 1.2E+02 0.0025 28.4 7.4 56 214-275 173-229 (460)
198 KOG0263 Transcription initiati 43.7 2.7E+02 0.0059 28.6 10.5 62 139-224 588-651 (707)
199 PF07734 FBA_1: F-box associat 43.5 1.8E+02 0.0038 23.6 12.8 127 136-276 2-146 (164)
200 KOG0279 G protein beta subunit 42.9 2.6E+02 0.0055 25.3 18.8 223 38-342 38-264 (315)
201 COG4880 Secreted protein conta 42.5 3.2E+02 0.007 26.4 14.9 184 29-276 397-597 (603)
202 KOG0278 Serine/threonine kinas 40.9 2.6E+02 0.0057 24.9 14.5 124 107-257 164-289 (334)
203 KOG0272 U4/U6 small nuclear ri 38.7 3.6E+02 0.0078 25.8 12.8 112 134-276 309-423 (459)
204 COG2706 3-carboxymuconate cycl 37.3 3.5E+02 0.0075 25.2 24.5 155 107-286 65-238 (346)
205 KOG0647 mRNA export protein (c 36.5 3.4E+02 0.0074 24.9 14.5 29 139-175 83-111 (347)
206 KOG0640 mRNA cleavage stimulat 35.2 2.9E+02 0.0063 25.4 8.4 97 107-226 237-339 (430)
207 KOG0274 Cdc4 and related F-box 35.1 4.8E+02 0.01 26.2 19.2 142 139-342 260-402 (537)
208 KOG0279 G protein beta subunit 34.9 3.5E+02 0.0075 24.5 14.7 101 140-272 162-265 (315)
209 KOG0321 WD40 repeat-containing 34.5 5.1E+02 0.011 26.3 17.9 102 15-150 61-167 (720)
210 KOG0263 Transcription initiati 33.5 4.6E+02 0.01 27.0 10.3 51 214-270 599-650 (707)
211 KOG0282 mRNA splicing factor [ 32.8 1.5E+02 0.0032 28.8 6.5 51 214-272 280-333 (503)
212 KOG0322 G-protein beta subunit 32.6 3.7E+02 0.0081 24.2 8.6 36 136-184 259-294 (323)
213 KOG0299 U3 snoRNP-associated p 32.6 4.7E+02 0.01 25.3 16.3 144 137-342 211-358 (479)
214 KOG0308 Conserved WD40 repeat- 32.1 4.1E+02 0.0089 27.0 9.5 65 139-225 129-204 (735)
215 KOG0274 Cdc4 and related F-box 32.1 5.4E+02 0.012 25.8 18.4 136 107-276 310-448 (537)
216 PF03022 MRJP: Major royal jel 31.1 4E+02 0.0087 24.1 10.2 98 189-322 11-123 (287)
217 COG4447 Uncharacterized protei 30.8 4E+02 0.0087 24.2 8.4 115 132-276 47-163 (339)
218 COG4946 Uncharacterized protei 30.8 5.3E+02 0.011 25.3 20.7 124 73-230 180-303 (668)
219 PF13088 BNR_2: BNR repeat-lik 29.6 3.9E+02 0.0084 23.4 13.8 196 139-369 58-268 (275)
220 KOG0282 mRNA splicing factor [ 28.6 2.3E+02 0.005 27.5 7.0 62 139-225 269-333 (503)
221 PRK01742 tolB translocation pr 28.6 5.3E+02 0.012 24.7 20.3 138 108-276 272-411 (429)
222 KOG1274 WD40 repeat protein [G 27.3 7.8E+02 0.017 26.2 16.8 61 246-319 200-260 (933)
223 COG0823 TolB Periplasmic compo 26.8 5.9E+02 0.013 24.6 15.0 109 106-232 260-369 (425)
224 KOG4378 Nuclear protein COP1 [ 26.5 6.4E+02 0.014 24.9 11.9 89 159-270 188-281 (673)
225 KOG0639 Transducin-like enhanc 26.4 6.4E+02 0.014 24.9 12.6 103 74-224 476-583 (705)
226 KOG1273 WD40 repeat protein [G 26.3 5.3E+02 0.011 23.9 16.4 30 306-342 253-282 (405)
227 PTZ00334 trans-sialidase; Prov 25.9 8E+02 0.017 25.9 12.5 90 214-313 287-379 (780)
228 PF14583 Pectate_lyase22: Olig 25.8 5.8E+02 0.013 24.3 9.2 73 187-276 44-117 (386)
229 KOG0305 Anaphase promoting com 25.5 6.6E+02 0.014 24.8 17.3 139 139-323 312-453 (484)
230 KOG0278 Serine/threonine kinas 25.4 4.9E+02 0.011 23.2 12.0 93 158-272 165-257 (334)
231 PF08950 DUF1861: Protein of u 25.3 1.5E+02 0.0032 26.7 4.9 59 244-322 34-96 (298)
232 PRK10115 protease 2; Provision 25.2 7.8E+02 0.017 25.5 22.3 152 106-276 151-309 (686)
233 KOG0296 Angio-associated migra 25.2 5.8E+02 0.013 24.0 16.6 149 66-272 66-223 (399)
234 KOG0306 WD40-repeat-containing 25.0 4.6E+02 0.01 27.2 8.6 105 184-338 378-482 (888)
235 KOG0293 WD40 repeat-containing 24.4 6.4E+02 0.014 24.2 12.1 132 110-276 293-430 (519)
236 COG3386 Gluconolactonase [Carb 24.3 5.6E+02 0.012 23.5 17.3 124 107-256 142-277 (307)
237 PF08662 eIF2A: Eukaryotic tra 23.9 4.3E+02 0.0094 22.1 9.4 70 139-231 71-140 (194)
238 smart00155 PLDc Phospholipase 22.4 1.3E+02 0.0028 16.2 2.7 21 303-323 4-24 (28)
239 KOG1898 Splicing factor 3b, su 22.1 1.1E+03 0.023 25.9 14.6 172 107-317 852-1034(1205)
240 KOG1273 WD40 repeat protein [G 21.9 6.4E+02 0.014 23.3 11.6 51 108-169 45-98 (405)
241 KOG2314 Translation initiation 21.8 6.4E+02 0.014 25.3 8.7 122 178-322 446-576 (698)
242 KOG0643 Translation initiation 21.6 6E+02 0.013 22.9 16.8 173 107-323 73-254 (327)
243 KOG0286 G-protein beta subunit 21.4 6.4E+02 0.014 23.1 19.5 149 74-274 108-264 (343)
244 KOG0640 mRNA cleavage stimulat 21.3 6.6E+02 0.014 23.2 8.6 95 158-271 238-337 (430)
245 PF13540 RCC1_2: Regulator of 20.2 1.7E+02 0.0036 16.2 2.9 18 66-83 8-26 (30)
246 smart00564 PQQ beta-propeller 20.2 1.4E+02 0.0029 16.4 2.6 16 332-347 16-31 (33)
247 KOG2111 Uncharacterized conser 20.1 7E+02 0.015 23.1 14.9 148 75-272 59-215 (346)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.8e-46 Score=365.69 Aligned_cols=284 Identities=26% Similarity=0.460 Sum_probs=248.4
Q ss_pred ceEEEEeeecCCCCCCCccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCC
Q 042957 18 GHLILASFCLREPGPRSNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESD 97 (371)
Q Consensus 18 ~~~i~~g~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 97 (371)
+.++++||..+ .....+.+.+|||.++.|..+++|+ .+|..+++++++++||++||.+.
T Consensus 285 ~~l~~vGG~~~----~~~~~~~ve~yd~~~~~w~~~a~m~-----~~r~~~~~~~~~~~lYv~GG~~~------------ 343 (571)
T KOG4441|consen 285 GKLVAVGGYNR----QGQSLRSVECYDPKTNEWSSLAPMP-----SPRCRVGVAVLNGKLYVVGGYDS------------ 343 (571)
T ss_pred CeEEEECCCCC----CCcccceeEEecCCcCcEeecCCCC-----cccccccEEEECCEEEEEccccC------------
Confidence 33444555443 2456788999999999999999998 56889999999999999999962
Q ss_pred ccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCC
Q 042957 98 DFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMS 177 (371)
Q Consensus 98 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 177 (371)
+...++.+|+||+.+++|..+++|..+|..++++++++.||++||.+ +...++++|+||+.+++|+.+++|+
T Consensus 344 -----~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d---g~~~l~svE~YDp~~~~W~~va~m~ 415 (571)
T KOG4441|consen 344 -----GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD---GEKSLNSVECYDPVTNKWTPVAPML 415 (571)
T ss_pred -----CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc---cccccccEEEecCCCCcccccCCCC
Confidence 23568999999999999999999999999999999999999999998 5567889999999999999999999
Q ss_pred CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCC
Q 042957 178 TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLK 257 (371)
Q Consensus 178 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~ 257 (371)
.+|..+++++++++||++||...... +++++++|||.+++|+.+++|+.++.. +++++++++||++||...
T Consensus 416 ~~r~~~gv~~~~g~iYi~GG~~~~~~--------~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 416 TRRSGHGVAVLGGKLYIIGGGDGSSN--------CLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred cceeeeEEEEECCEEEEEcCcCCCcc--------ccceEEEEcCCCCceeecCCccccccc-ceEEEECCEEEEECCccC
Confidence 99999999999999999999887764 568999999999999999999999875 589999999999999865
Q ss_pred -CccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEE
Q 042957 258 -AWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHI 336 (371)
Q Consensus 258 -~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~ 336 (371)
.....+++||+.+++|+.+ ++|..+ |..+++++++++||++||.+.. ..+.+|+.
T Consensus 487 ~~~~~~VE~ydp~~~~W~~v-----~~m~~~---------------rs~~g~~~~~~~ly~vGG~~~~----~~l~~ve~ 542 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWTMV-----APMTSP---------------RSAVGVVVLGGKLYAVGGFDGN----NNLNTVEC 542 (571)
T ss_pred CCccceEEEEcCCCCceeEc-----ccCccc---------------cccccEEEECCEEEEEecccCc----cccceeEE
Confidence 2346699999999999999 888766 9999999999999999997765 78999999
Q ss_pred eecccccccccccCccccccccccccceeeEEe
Q 042957 337 FDTAAKSDAWRSFEPIVEEGEKELCSHCCVVQL 369 (371)
Q Consensus 337 ~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~~ 369 (371)
|||+++ +|+..+. |. ......+|++..
T Consensus 543 ydp~~d--~W~~~~~-~~---~~~~~~~~~~~~ 569 (571)
T KOG4441|consen 543 YDPETD--TWTEVTE-PE---SGRGGAGVAVIP 569 (571)
T ss_pred cCCCCC--ceeeCCC-cc---ccccCcceEEec
Confidence 999998 9999999 63 444445555543
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=341.63 Aligned_cols=261 Identities=20% Similarity=0.309 Sum_probs=220.4
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
..+++|||.+++|..+++|| .+|..|++++++++||++||... .....+.+++||+.+
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp-----~~r~~~~~a~l~~~IYviGG~~~-----------------~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIP-----NHIINYASAIVDNEIIIAGGYNF-----------------NNPSLNKVYKINIEN 329 (557)
T ss_pred CCEEEEeCCCCeEEECCCCC-----ccccceEEEEECCEEEEEcCCCC-----------------CCCccceEEEEECCC
Confidence 46899999999999999998 45778899999999999999741 113468899999999
Q ss_pred CeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEec
Q 042957 118 NEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSG 197 (371)
Q Consensus 118 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG 197 (371)
++|.++++|+.+|..+++++++++||++||.++ ....+++++||+.+++|+.+++||.+|..+++++++++||++||
T Consensus 330 n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG 406 (557)
T PHA02713 330 KIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406 (557)
T ss_pred CeEeeCCCCcchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeC
Confidence 999999999999999999999999999999863 33567899999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCc---------cccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCC--ccCeEEEE
Q 042957 198 FAQRADSDGSV---------HFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKA--WKGHIESY 266 (371)
Q Consensus 198 ~~~~~~~~~~~---------~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~y 266 (371)
........... .....+++++|||++++|+.+++|+.++.. +++++++++||++||.... ....+++|
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 407 RTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred CCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEe
Confidence 86432100000 000247899999999999999999988764 6889999999999997532 22458999
Q ss_pred eCCC-CceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeeccccccc
Q 042957 267 DGEL-NMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDA 345 (371)
Q Consensus 267 d~~~-~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~ 345 (371)
||++ ++|+.+ ++|+.+ |..+++++++|+||++||.++. .++++||+.++ +
T Consensus 486 dp~~~~~W~~~-----~~m~~~---------------r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~--~ 536 (557)
T PHA02713 486 NTNTYNGWELI-----TTTESR---------------LSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTY--E 536 (557)
T ss_pred cCCCCCCeeEc-----cccCcc---------------cccceeEEECCEEEEEeeecce-------eehhhcCcccc--c
Confidence 9999 899999 889765 9999999999999999998652 47999999998 9
Q ss_pred ccccCccc
Q 042957 346 WRSFEPIV 353 (371)
Q Consensus 346 W~~~~~~p 353 (371)
|+.+.+.-
T Consensus 537 W~~~~~~~ 544 (557)
T PHA02713 537 WNHICHQH 544 (557)
T ss_pred ccchhhhc
Confidence 99886543
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.6e-39 Score=298.05 Aligned_cols=276 Identities=16% Similarity=0.247 Sum_probs=208.8
Q ss_pred CCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecC
Q 042957 45 PSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCA 124 (371)
Q Consensus 45 ~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 124 (371)
+...+|.++....... +.+|..|++++++++|||+||.... .....+++|+||+.+++|++++
T Consensus 4 ~~~~~W~~~~~~~~~~-P~pR~~h~~~~~~~~iyv~GG~~~~----------------~~~~~~~~~~yd~~~~~W~~~~ 66 (341)
T PLN02153 4 TLQGGWIKVEQKGGKG-PGPRCSHGIAVVGDKLYSFGGELKP----------------NEHIDKDLYVFDFNTHTWSIAP 66 (341)
T ss_pred ccCCeEEEecCCCCCC-CCCCCcceEEEECCEEEEECCccCC----------------CCceeCcEEEEECCCCEEEEcC
Confidence 4678899998742211 2569999999999999999998521 1124578999999999999988
Q ss_pred CCC-CCC---CCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCC-----CCCceeeEEEEECCEEEEE
Q 042957 125 PLS-VPR---YDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNM-----STLRYKCVGVTWQGKIHVV 195 (371)
Q Consensus 125 ~~~-~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~~~~~~~~~~~~~lyv~ 195 (371)
+++ .|| .+|++++++++||++||... ....+++++||+.+++|+.+++| |.+|..|++++.+++|||+
T Consensus 67 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~ 143 (341)
T PLN02153 67 ANGDVPRISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVF 143 (341)
T ss_pred ccCCCCCCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEE
Confidence 764 343 36889999999999999863 23467899999999999999877 7889999999999999999
Q ss_pred ecccCCCCCCCCccccccCeeEEEECCCCceeecccccc--CCCCCCeEEEECCEEEEEcCCCC---------CccCeEE
Q 042957 196 SGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ--LDIPPNQIVEVDNRLFSSGDCLK---------AWKGHIE 264 (371)
Q Consensus 196 GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~--~~~~~~~~~~~~~~iyv~GG~~~---------~~~~~~~ 264 (371)
||.......... ..++++++||+++++|+.++.+.. ..+..+++++++++||++||... ...++++
T Consensus 144 GG~~~~~~~~~~---~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~ 220 (341)
T PLN02153 144 GGVSKGGLMKTP---ERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQ 220 (341)
T ss_pred CCccCCCccCCC---cccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceE
Confidence 998643211000 034689999999999999987642 23334678889999999998632 1246899
Q ss_pred EEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecc-----cccceeeEEEEeec
Q 042957 265 SYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAG-----ELARTMSMVHIFDT 339 (371)
Q Consensus 265 ~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-----~~~~~~~~v~~~d~ 339 (371)
+||+++++|+++ ..+... |.+|..++++.++++|||+||..... .......+++.||+
T Consensus 221 ~yd~~~~~W~~~-----~~~g~~------------P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~ 283 (341)
T PLN02153 221 FFDPASGKWTEV-----ETTGAK------------PSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT 283 (341)
T ss_pred EEEcCCCcEEec-----cccCCC------------CCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEc
Confidence 999999999999 332111 45599999999999999999974321 01234568999999
Q ss_pred ccccccccccC-----ccccccccccccceee
Q 042957 340 AAKSDAWRSFE-----PIVEEGEKELCSHCCV 366 (371)
Q Consensus 340 ~~~~~~W~~~~-----~~p~~~~~~~~~~~~~ 366 (371)
+++ +|+.++ ++| +.++.++|+
T Consensus 284 ~~~--~W~~~~~~~~~~~p----r~~~~~~~~ 309 (341)
T PLN02153 284 ETL--VWEKLGECGEPAMP----RGWTAYTTA 309 (341)
T ss_pred Ccc--EEEeccCCCCCCCC----Ccccccccc
Confidence 998 999985 455 556544443
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.3e-38 Score=302.70 Aligned_cols=267 Identities=15% Similarity=0.289 Sum_probs=212.4
Q ss_pred ccceeEE--eCCC----CceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceE
Q 042957 37 SNWLASY--NPSN----NTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWV 110 (371)
Q Consensus 37 ~~~~~~y--d~~~----~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 110 (371)
.+++-.| ||.+ ++|.++.++... +.+|..|+++++++.|||+||.... .....+++
T Consensus 134 ~~~ig~y~~~~~~~~~~~~W~~~~~~~~~--P~pR~~h~~~~~~~~iyv~GG~~~~----------------~~~~~~~v 195 (470)
T PLN02193 134 LHSLGAYISLPSTPKLLGKWIKVEQKGEG--PGLRCSHGIAQVGNKIYSFGGEFTP----------------NQPIDKHL 195 (470)
T ss_pred EEeeEEEEecCCChhhhceEEEcccCCCC--CCCccccEEEEECCEEEEECCcCCC----------------CCCeeCcE
Confidence 4555444 7655 899999875432 2579999999999999999997521 11235689
Q ss_pred EEEECCCCeeeecCCC---CC-CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCC---CCCceee
Q 042957 111 LRYNVKSNEWTRCAPL---SV-PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNM---STLRYKC 183 (371)
Q Consensus 111 ~~yd~~~~~W~~~~~~---~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~~~~ 183 (371)
|+||+.+++|+.++.+ |. .|..|++++++++||++||... ...++++++||+.+++|++++++ |.+|..|
T Consensus 196 ~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~---~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 196 YVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA---SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC---CCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 9999999999987643 33 2568889999999999999863 34578999999999999999887 8899999
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccc---cccCCCCCCeEEEECCEEEEEcCCCCCcc
Q 042957 184 VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR---MWQLDIPPNQIVEVDNRLFSSGDCLKAWK 260 (371)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~ 260 (371)
+++.++++|||+||..... ..+++++||+.+++|+.++. ++.++ ..+++++++++||++||......
T Consensus 273 ~~~~~~~~iYv~GG~~~~~---------~~~~~~~yd~~t~~W~~~~~~~~~~~~R-~~~~~~~~~gkiyviGG~~g~~~ 342 (470)
T PLN02193 273 SMAADEENVYVFGGVSATA---------RLKTLDSYNIVDKKWFHCSTPGDSFSIR-GGAGLEVVQGKVWVVYGFNGCEV 342 (470)
T ss_pred EEEEECCEEEEECCCCCCC---------CcceEEEEECCCCEEEeCCCCCCCCCCC-CCcEEEEECCcEEEEECCCCCcc
Confidence 9999999999999987544 45789999999999998865 33333 34678889999999999865556
Q ss_pred CeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeeccc-----ccceeeEEE
Q 042957 261 GHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGE-----LARTMSMVH 335 (371)
Q Consensus 261 ~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-----~~~~~~~v~ 335 (371)
+++++||+++++|+.+ +.+... |.+|..|+++.++++|||+||...... .....++++
T Consensus 343 ~dv~~yD~~t~~W~~~-----~~~g~~------------P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 343 DDVHYYDPVQDKWTQV-----ETFGVR------------PSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CceEEEECCCCEEEEe-----ccCCCC------------CCCcceeEEEEECCEEEEECCccCCccccccCccceeccEE
Confidence 8899999999999999 544222 556999999999999999999864211 113556899
Q ss_pred EeecccccccccccCccc
Q 042957 336 IFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 336 ~~d~~~~~~~W~~~~~~p 353 (371)
+||++++ +|+.++.++
T Consensus 406 ~~D~~t~--~W~~~~~~~ 421 (470)
T PLN02193 406 ALDTETL--QWERLDKFG 421 (470)
T ss_pred EEEcCcC--EEEEcccCC
Confidence 9999998 999998765
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6.5e-38 Score=292.48 Aligned_cols=267 Identities=21% Similarity=0.255 Sum_probs=199.7
Q ss_pred ccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE
Q 042957 35 NISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN 114 (371)
Q Consensus 35 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 114 (371)
...+++++||+.+++|..+++++..+. ..+.+|++++++++||||||.. ....++++++||
T Consensus 47 ~~~~~~~~yd~~~~~W~~~~~~~~~p~-~~~~~~~~~~~~~~iyv~GG~~------------------~~~~~~~v~~yd 107 (341)
T PLN02153 47 HIDKDLYVFDFNTHTWSIAPANGDVPR-ISCLGVRMVAVGTKLYIFGGRD------------------EKREFSDFYSYD 107 (341)
T ss_pred ceeCcEEEEECCCCEEEEcCccCCCCC-CccCceEEEEECCEEEEECCCC------------------CCCccCcEEEEE
Confidence 456789999999999999987753221 2345789999999999999985 223467899999
Q ss_pred CCCCeeeecCCC-----CCCCCCeeEEEECCEEEEEcCCCCCCC---CCCCceEEEEeCCCCceEeCCCCC---CCceee
Q 042957 115 VKSNEWTRCAPL-----SVPRYDFACTVCDNKIYVAGGKSNLFS---AKGTASAEVYHPELDQWTPLPNMS---TLRYKC 183 (371)
Q Consensus 115 ~~~~~W~~~~~~-----~~~r~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~~~yd~~t~~W~~~~~~p---~~~~~~ 183 (371)
+.+++|+.++++ |.+|..|++++.+++|||+||.+.... ...++++++||+++++|++++++. .+|..+
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~ 187 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc
Confidence 999999999877 788999999999999999999863211 123578999999999999998754 678888
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccc---cccCCCCCCeEEEECCEEEEEcCCC----
Q 042957 184 VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR---MWQLDIPPNQIVEVDNRLFSSGDCL---- 256 (371)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~---- 256 (371)
++++++++|||+||............ ...+.+++||+++++|+.+.. +|.++. .+++++++++|||+||..
T Consensus 188 ~~~~~~~~iyv~GG~~~~~~~gG~~~-~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~-~~~~~~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 188 GFAVVQGKIWVVYGFATSILPGGKSD-YESNAVQFFDPASGKWTEVETTGAKPSARS-VFAHAVVGKYIIIFGGEVWPDL 265 (341)
T ss_pred eEEEECCeEEEEeccccccccCCccc-eecCceEEEEcCCCcEEeccccCCCCCCcc-eeeeEEECCEEEEECcccCCcc
Confidence 88999999999999753210000000 024689999999999999864 455554 467889999999999962
Q ss_pred ------CCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEe--eeCCeEEEEcceeeccccc
Q 042957 257 ------KAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMA--PIGTHLYFLAGYRMAGELA 328 (371)
Q Consensus 257 ------~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~ 328 (371)
....+++++||+++++|+.+.....+++|.. |..++.+ ..+++|||+||.....
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~---------------~~~~~~~~v~~~~~~~~~gG~~~~~--- 327 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRG---------------WTAYTTATVYGKNGLLMHGGKLPTN--- 327 (341)
T ss_pred ccccccccccccEEEEEcCccEEEeccCCCCCCCCCc---------------cccccccccCCcceEEEEcCcCCCC---
Confidence 1124689999999999999943222334332 4333333 3345899999997652
Q ss_pred ceeeEEEEeecc
Q 042957 329 RTMSMVHIFDTA 340 (371)
Q Consensus 329 ~~~~~v~~~d~~ 340 (371)
..+.+++.|+..
T Consensus 328 ~~~~~~~~~~~~ 339 (341)
T PLN02153 328 ERTDDLYFYAVN 339 (341)
T ss_pred ccccceEEEecc
Confidence 467899998765
No 6
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=311.31 Aligned_cols=256 Identities=21% Similarity=0.381 Sum_probs=218.7
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
..+.+|++.+++|..+++.+. +..|+++++++.||++||.... ....+++++||+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lyv~GG~~~~-----------------~~~~~~v~~yd~~~ 320 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDIHY------VYCFGSVVLNNVIYFIGGMNKN-----------------NLSVNSVVSYDTKT 320 (534)
T ss_pred ceeeecchhhhhcccccCccc------cccceEEEECCEEEEECCCcCC-----------------CCeeccEEEEeCCC
Confidence 446689999999999876541 3567899999999999998521 23467899999999
Q ss_pred CeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEec
Q 042957 118 NEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSG 197 (371)
Q Consensus 118 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG 197 (371)
++|..+++++.+|..|+++.++++||++||... ....+++++||+.+++|+.+++||.+|..++++.++++||++||
T Consensus 321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG 397 (534)
T PHA03098 321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGG 397 (534)
T ss_pred CeeeECCCCCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECC
Confidence 999999999999999999999999999999863 34578899999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCc----cCeEEEEeCCCCce
Q 042957 198 FAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAW----KGHIESYDGELNMW 273 (371)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~----~~~~~~yd~~~~~W 273 (371)
...... ..+.+++||+.+++|+.+.++|.++.. ++++..+++||++||..... .+.+++||+++++|
T Consensus 398 ~~~~~~--------~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 398 ISKNDE--------LLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred cCCCCc--------ccceEEEEeCCCCeeeecCCCCccccC-ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 754432 357899999999999999999887764 67888999999999974321 35699999999999
Q ss_pred EeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccccccccccCccc
Q 042957 274 DEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~~p 353 (371)
+.+ ++++.+ |..++++.++++|||+||.... ....++++||++++ +|+.++.+|
T Consensus 469 ~~~-----~~~~~~---------------r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~--~W~~~~~~p 522 (534)
T PHA03098 469 TEL-----SSLNFP---------------RINASLCIFNNKIYVVGGDKYE----YYINEIEVYDDKTN--TWTLFCKFP 522 (534)
T ss_pred eeC-----CCCCcc---------------cccceEEEECCEEEEEcCCcCC----cccceeEEEeCCCC--EEEecCCCc
Confidence 999 777654 8899999999999999998754 34678999999998 999999988
Q ss_pred c
Q 042957 354 E 354 (371)
Q Consensus 354 ~ 354 (371)
+
T Consensus 523 ~ 523 (534)
T PHA03098 523 K 523 (534)
T ss_pred c
Confidence 4
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.8e-37 Score=297.03 Aligned_cols=257 Identities=19% Similarity=0.302 Sum_probs=203.6
Q ss_pred ccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE
Q 042957 35 NISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN 114 (371)
Q Consensus 35 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 114 (371)
...+++++||+.+++|..++.+...+ +..|..|++++++++||||||.. ....++++|+||
T Consensus 190 ~~~~~v~~yD~~~~~W~~~~~~g~~P-~~~~~~~~~v~~~~~lYvfGG~~------------------~~~~~ndv~~yD 250 (470)
T PLN02193 190 PIDKHLYVFDLETRTWSISPATGDVP-HLSCLGVRMVSIGSTLYVFGGRD------------------ASRQYNGFYSFD 250 (470)
T ss_pred CeeCcEEEEECCCCEEEeCCCCCCCC-CCcccceEEEEECCEEEEECCCC------------------CCCCCccEEEEE
Confidence 34578999999999999887653222 12367899999999999999985 223578999999
Q ss_pred CCCCeeeecCCC---CCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCC---CCCCceeeEEEEE
Q 042957 115 VKSNEWTRCAPL---SVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPN---MSTLRYKCVGVTW 188 (371)
Q Consensus 115 ~~~~~W~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~~~~~~~~~~ 188 (371)
+.+++|++++++ |.+|+.|++++.+++||++||... ....+++++||+.+++|+.++. +|.+|..++++++
T Consensus 251 ~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~---~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~ 327 (470)
T PLN02193 251 TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA---TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV 327 (470)
T ss_pred CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC---CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE
Confidence 999999999887 789999999999999999999863 3356889999999999999874 6778888999999
Q ss_pred CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccc---ccCCCCCCeEEEECCEEEEEcCCCC--------
Q 042957 189 QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARM---WQLDIPPNQIVEVDNRLFSSGDCLK-------- 257 (371)
Q Consensus 189 ~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~~~~~~~~~~~~~~iyv~GG~~~-------- 257 (371)
+++||++||..+. ..+++++||+.+++|+.+..+ |.++. .+++++++++|||+||...
T Consensus 328 ~gkiyviGG~~g~----------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 328 QGKVWVVYGFNGC----------EVDDVHYYDPVQDKWTQVETFGVRPSERS-VFASAAVGKHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred CCcEEEEECCCCC----------ccCceEEEECCCCEEEEeccCCCCCCCcc-eeEEEEECCEEEEECCccCCccccccC
Confidence 9999999997642 347899999999999999755 44544 4678899999999999732
Q ss_pred --CccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEe--eeC--CeEEEEcceeeccccccee
Q 042957 258 --AWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMA--PIG--THLYFLAGYRMAGELARTM 331 (371)
Q Consensus 258 --~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~--~~~--~~l~v~GG~~~~~~~~~~~ 331 (371)
...+++++||+.+++|+.+ ..+... .-+|.+|..++++ .+. +.|+++||..+. +..+
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~~-----~~~~~~---------~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~---~~~~ 459 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWERL-----DKFGEE---------EETPSSRGWTASTTGTIDGKKGLVMHGGKAPT---NDRF 459 (470)
T ss_pred ccceeccEEEEEcCcCEEEEc-----ccCCCC---------CCCCCCCccccceeeEEcCCceEEEEcCCCCc---cccc
Confidence 1346899999999999999 444311 1236678777543 333 459999999764 2567
Q ss_pred eEEEEeeccc
Q 042957 332 SMVHIFDTAA 341 (371)
Q Consensus 332 ~~v~~~d~~~ 341 (371)
.+++.|++++
T Consensus 460 ~D~~~~~~~~ 469 (470)
T PLN02193 460 DDLFFYGIDS 469 (470)
T ss_pred cceEEEecCC
Confidence 8999998764
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.5e-38 Score=306.39 Aligned_cols=237 Identities=27% Similarity=0.476 Sum_probs=211.0
Q ss_pred EECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCC
Q 042957 72 SLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNL 151 (371)
Q Consensus 72 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 151 (371)
...+.||++||... .......++.||+.+++|..+++||.+|..+++++++++||++||.+.
T Consensus 282 ~~~~~l~~vGG~~~-----------------~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~- 343 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNR-----------------QGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS- 343 (571)
T ss_pred CCCCeEEEECCCCC-----------------CCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccC-
Confidence 55688999999963 135688999999999999999999999999999999999999999984
Q ss_pred CCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccc
Q 042957 152 FSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR 231 (371)
Q Consensus 152 ~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 231 (371)
+...++++++||+.+++|..+++|+.+|..++++++++.||++||+++.. .++++++||+.+++|+.+++
T Consensus 344 -~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~---------~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 344 -GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK---------SLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred -CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccc---------ccccEEEecCCCCcccccCC
Confidence 44568999999999999999999999999999999999999999999766 67899999999999999999
Q ss_pred cccCCCCCCeEEEECCEEEEEcCCCCC--ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEe
Q 042957 232 MWQLDIPPNQIVEVDNRLFSSGDCLKA--WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMA 309 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~iyv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~ 309 (371)
|+.++. .+++++++++||++||.... ..+.+++|||.+++|+.+ ++|+.+ |.+++++
T Consensus 414 m~~~r~-~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-----~~M~~~---------------R~~~g~a 472 (571)
T KOG4441|consen 414 MLTRRS-GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-----APMNTR---------------RSGFGVA 472 (571)
T ss_pred CCccee-eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec-----CCcccc---------------cccceEE
Confidence 999554 57999999999999997443 458899999999999999 999876 9999999
Q ss_pred eeCCeEEEEcceeecccccceeeEEEEeecccccccccccCccccccccccccceeeE
Q 042957 310 PIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEPIVEEGEKELCSHCCVV 367 (371)
Q Consensus 310 ~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 367 (371)
.++++||++||.++. ....+|+.|||+++ +|+.+.+|+. ++..++|++
T Consensus 473 ~~~~~iYvvGG~~~~----~~~~~VE~ydp~~~--~W~~v~~m~~----~rs~~g~~~ 520 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGT----SALSSVERYDPETN--QWTMVAPMTS----PRSAVGVVV 520 (571)
T ss_pred EECCEEEEECCccCC----CccceEEEEcCCCC--ceeEcccCcc----ccccccEEE
Confidence 999999999999874 45677999999999 9999999994 555555543
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9.5e-37 Score=285.46 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=193.4
Q ss_pred cceeEEeC--CCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNP--SNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~--~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
+.+++||+ .+++|.++++||. .+|..+++++++++|||+||....... .....++++|+||+
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~----~~R~~~~~~~~~~~iYv~GG~~~~~~~------------~~~~~~~~v~~Yd~ 92 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPG----GPRNQAVAAAIDGKLYVFGGIGKANSE------------GSPQVFDDVYRYDP 92 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCC----CCcccceEEEECCEEEEEeCCCCCCCC------------CcceecccEEEEEC
Confidence 56899996 6789999999873 358889999999999999998521100 01134688999999
Q ss_pred CCCeeeecC-CCCCCCCCeeEE-EECCEEEEEcCCCCCCC-------------------------------CCCCceEEE
Q 042957 116 KSNEWTRCA-PLSVPRYDFACT-VCDNKIYVAGGKSNLFS-------------------------------AKGTASAEV 162 (371)
Q Consensus 116 ~~~~W~~~~-~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~-------------------------------~~~~~~~~~ 162 (371)
.+++|++++ ++|.+|..++++ +.+++||++||.+.... ....+++++
T Consensus 93 ~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (346)
T TIGR03547 93 KKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLS 172 (346)
T ss_pred CCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEE
Confidence 999999997 456667777666 78999999999853100 012478999
Q ss_pred EeCCCCceEeCCCCCC-CceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEE--CCCCceeeccccccCCCC-
Q 042957 163 YHPELDQWTPLPNMST-LRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD--TQAGKWDLVARMWQLDIP- 238 (371)
Q Consensus 163 yd~~t~~W~~~~~~p~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd--~~t~~W~~~~~~~~~~~~- 238 (371)
||+.+++|+.+++||. +|..+++++++++|||+||...... ....++.|| +++++|+.+.+|+.++..
T Consensus 173 YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~ 244 (346)
T TIGR03547 173 YDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL--------RTAEVKQYLFTGGKLEWNKLPPLPPPKSSS 244 (346)
T ss_pred EECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc--------cchheEEEEecCCCceeeecCCCCCCCCCc
Confidence 9999999999999996 6888888999999999999764321 123455554 577899999999876421
Q ss_pred -----CCeEEEECCEEEEEcCCCCC------------------ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCC
Q 042957 239 -----PNQIVEVDNRLFSSGDCLKA------------------WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNT 295 (371)
Q Consensus 239 -----~~~~~~~~~~iyv~GG~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~ 295 (371)
.+.+++++++||++||.... ....+++||+++++|+.+ ++||.+
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~-----~~lp~~-------- 311 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV-----GKLPQG-------- 311 (346)
T ss_pred cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc-----CCCCCC--------
Confidence 22367889999999997421 013589999999999999 788655
Q ss_pred CCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEe
Q 042957 296 EDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIF 337 (371)
Q Consensus 296 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~ 337 (371)
|.+++++.++++|||+||....+ ....+|+.+
T Consensus 312 -------~~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~~ 343 (346)
T TIGR03547 312 -------LAYGVSVSWNNGVLLIGGENSGG---KAVTDVYLL 343 (346)
T ss_pred -------ceeeEEEEcCCEEEEEeccCCCC---CEeeeEEEE
Confidence 88999999999999999986543 456677665
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.5e-36 Score=286.37 Aligned_cols=288 Identities=14% Similarity=0.172 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCccCCCce--EEEE-eeecCCCCCCCccccceeEEeCC--CCceeccCCCCcccccccccceEEEEECCE
Q 042957 2 DSLTSSPSPPTERNPSGH--LILA-SFCLREPGPRSNISNWLASYNPS--NNTWSHVSHIPDLLENHVLKGFSIVSLGDS 76 (371)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~i~~-g~~~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~ 76 (371)
..||++|.|........+ .|++ |+. . .+.+++||+. +++|..++++|. .+|..+++++++++
T Consensus 20 ~~l~~lP~~~~~~~~~~~~~~iyv~gG~-~--------~~~~~~~d~~~~~~~W~~l~~~p~----~~r~~~~~v~~~~~ 86 (376)
T PRK14131 20 EQLPDLPVPFKNGTGAIDNNTVYVGLGS-A--------GTSWYKLDLNAPSKGWTKIAAFPG----GPREQAVAAFIDGK 86 (376)
T ss_pred ccCCCCCcCccCCeEEEECCEEEEEeCC-C--------CCeEEEEECCCCCCCeEECCcCCC----CCcccceEEEECCE
Confidence 568888877665422221 2322 222 1 1348899986 478999998873 35889999999999
Q ss_pred EEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCC-CCCCCCCeeEEE-ECCEEEEEcCCCCCC--
Q 042957 77 VYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAP-LSVPRYDFACTV-CDNKIYVAGGKSNLF-- 152 (371)
Q Consensus 77 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~lyv~GG~~~~~-- 152 (371)
|||+||.....+. .....++++|+||+.+++|+.+++ .|.++..|++++ .+++||++||.....
T Consensus 87 IYV~GG~~~~~~~------------~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~ 154 (376)
T PRK14131 87 LYVFGGIGKTNSE------------GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFD 154 (376)
T ss_pred EEEEcCCCCCCCC------------CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHH
Confidence 9999998521000 012346899999999999999985 466677777776 899999999975310
Q ss_pred -----------------------------CCCCCceEEEEeCCCCceEeCCCCCC-CceeeEEEEECCEEEEEecccCCC
Q 042957 153 -----------------------------SAKGTASAEVYHPELDQWTPLPNMST-LRYKCVGVTWQGKIHVVSGFAQRA 202 (371)
Q Consensus 153 -----------------------------~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~~~lyv~GG~~~~~ 202 (371)
.....+++++||+.+++|+.++++|. +|.+++++.++++|||+||.....
T Consensus 155 ~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~ 234 (376)
T PRK14131 155 GYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG 234 (376)
T ss_pred HHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC
Confidence 00124789999999999999999996 788888889999999999975432
Q ss_pred CCCCCccccccCee--EEEECCCCceeeccccccCCCC-------CCeEEEECCEEEEEcCCCCCc--------------
Q 042957 203 DSDGSVHFTERSSA--EVYDTQAGKWDLVARMWQLDIP-------PNQIVEVDNRLFSSGDCLKAW-------------- 259 (371)
Q Consensus 203 ~~~~~~~~~~~~~v--~~yd~~t~~W~~~~~~~~~~~~-------~~~~~~~~~~iyv~GG~~~~~-------------- 259 (371)
. ....+ ..||+++++|+.+..|+.++.. .+.+++++++||++||.....
T Consensus 235 ~--------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 235 L--------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred c--------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 1 11233 4568899999999998876531 112567899999999974211
Q ss_pred ----cCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEE
Q 042957 260 ----KGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVH 335 (371)
Q Consensus 260 ----~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~ 335 (371)
...+++||+++++|+.+ +.||.+ |.+++++.++++|||+||.... ...+++|+
T Consensus 307 ~~~~~~~~e~yd~~~~~W~~~-----~~lp~~---------------r~~~~av~~~~~iyv~GG~~~~---~~~~~~v~ 363 (376)
T PRK14131 307 GLKKSWSDEIYALVNGKWQKV-----GELPQG---------------LAYGVSVSWNNGVLLIGGETAG---GKAVSDVT 363 (376)
T ss_pred CCcceeehheEEecCCccccc-----CcCCCC---------------ccceEEEEeCCEEEEEcCCCCC---CcEeeeEE
Confidence 12467999999999999 788655 8999999999999999997653 24678999
Q ss_pred Eeeccccccccc
Q 042957 336 IFDTAAKSDAWR 347 (371)
Q Consensus 336 ~~d~~~~~~~W~ 347 (371)
.|+++.+ ++.
T Consensus 364 ~~~~~~~--~~~ 373 (376)
T PRK14131 364 LLSWDGK--KLT 373 (376)
T ss_pred EEEEcCC--EEE
Confidence 9998876 554
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1e-36 Score=282.34 Aligned_cols=237 Identities=19% Similarity=0.284 Sum_probs=191.3
Q ss_pred CccccceeEEe-CCCC-ceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEE
Q 042957 34 SNISNWLASYN-PSNN-TWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVL 111 (371)
Q Consensus 34 ~~~~~~~~~yd-~~~~-~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 111 (371)
....+++++|+ +..+ +|..+++|| .+|..+++++++++||++||.+ ....++++|
T Consensus 35 ~~~~~~v~~~~~~~~~~~W~~~~~lp-----~~r~~~~~~~~~~~lyviGG~~------------------~~~~~~~v~ 91 (323)
T TIGR03548 35 KKNYKGIYIAKDENSNLKWVKDGQLP-----YEAAYGASVSVENGIYYIGGSN------------------SSERFSSVY 91 (323)
T ss_pred EEeeeeeEEEecCCCceeEEEcccCC-----ccccceEEEEECCEEEEEcCCC------------------CCCCceeEE
Confidence 34567888885 4333 799999888 4677888899999999999985 224578999
Q ss_pred EEECCCCee----eecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCC-CceeeEEE
Q 042957 112 RYNVKSNEW----TRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMST-LRYKCVGV 186 (371)
Q Consensus 112 ~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~ 186 (371)
+||+.+++| +.++++|.+|..|++++++++||++||... ....+++++||+.+++|+++++||. +|..++++
T Consensus 92 ~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~ 168 (323)
T TIGR03548 92 RITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN---GKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCV 168 (323)
T ss_pred EEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC---CccCceEEEEcCCCCCeeECCCCCCCCCCcceEE
Confidence 999999987 788999999999999999999999999752 2346899999999999999999884 78888888
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc---CC--CCCCeEEEECCEEEEEcCCCCC---
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ---LD--IPPNQIVEVDNRLFSSGDCLKA--- 258 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~---~~--~~~~~~~~~~~~iyv~GG~~~~--- 258 (371)
+++++|||+||..... ..++++||+++++|+.+..++. ++ ...++++..+++||++||....
T Consensus 169 ~~~~~iYv~GG~~~~~----------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 238 (323)
T TIGR03548 169 KLQNELYVFGGGSNIA----------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYN 238 (323)
T ss_pred EECCEEEEEcCCCCcc----------ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHH
Confidence 9999999999976432 3568999999999999987642 21 1222345558999999997531
Q ss_pred ------------------------------ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeE
Q 042957 259 ------------------------------WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTM 308 (371)
Q Consensus 259 ------------------------------~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~ 308 (371)
..+.+++||+.+++|+.+ ++++. .+|..+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~p~--------------~~r~~~~~ 299 (323)
T TIGR03548 239 DAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSI-----GNSPF--------------FARCGAAL 299 (323)
T ss_pred HHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEc-----ccccc--------------cccCchhe
Confidence 135799999999999999 66642 24899999
Q ss_pred eeeCCeEEEEcceeecc
Q 042957 309 APIGTHLYFLAGYRMAG 325 (371)
Q Consensus 309 ~~~~~~l~v~GG~~~~~ 325 (371)
+.++++||++||...++
T Consensus 300 ~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 300 LLTGNNIFSINGELKPG 316 (323)
T ss_pred EEECCEEEEEeccccCC
Confidence 99999999999987653
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=292.26 Aligned_cols=211 Identities=20% Similarity=0.409 Sum_probs=185.3
Q ss_pred EEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCC
Q 042957 70 IVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKS 149 (371)
Q Consensus 70 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~ 149 (371)
.+.+++.||++||.+ .....+.+++||+.+++|..+++|+.+|..++++..+++||++||.+
T Consensus 267 ~~~~~~~lyviGG~~------------------~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~ 328 (480)
T PHA02790 267 STHVGEVVYLIGGWM------------------NNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP 328 (480)
T ss_pred eEEECCEEEEEcCCC------------------CCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC
Confidence 455899999999985 22356789999999999999999999999999999999999999985
Q ss_pred CCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeec
Q 042957 150 NLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLV 229 (371)
Q Consensus 150 ~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~ 229 (371)
. .+++++||+.+++|..+++||.+|..+++++++++||++||.... .+.+++|||++++|+.+
T Consensus 329 ~------~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-----------~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 329 N------PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-----------DTTTEYLLPNHDQWQFG 391 (480)
T ss_pred C------CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-----------CccEEEEeCCCCEEEeC
Confidence 2 256899999999999999999999999999999999999997532 25789999999999999
Q ss_pred cccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEe
Q 042957 230 ARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMA 309 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~ 309 (371)
++|+.++.. +++++++++||++||. +++||+++++|+.+ ++|+.+ |..++++
T Consensus 392 ~~m~~~r~~-~~~~~~~~~IYv~GG~-------~e~ydp~~~~W~~~-----~~m~~~---------------r~~~~~~ 443 (480)
T PHA02790 392 PSTYYPHYK-SCALVFGRRLFLVGRN-------AEFYCESSNTWTLI-----DDPIYP---------------RDNPELI 443 (480)
T ss_pred CCCCCcccc-ceEEEECCEEEEECCc-------eEEecCCCCcEeEc-----CCCCCC---------------ccccEEE
Confidence 999988765 5788999999999983 78999999999999 888755 9999999
Q ss_pred eeCCeEEEEcceeecccccceeeEEEEeeccccccccccc
Q 042957 310 PIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSF 349 (371)
Q Consensus 310 ~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~ 349 (371)
+++++||++||.+.. ....+++.||++++ +|+..
T Consensus 444 v~~~~IYviGG~~~~----~~~~~ve~Yd~~~~--~W~~~ 477 (480)
T PHA02790 444 IVDNKLLLIGGFYRG----SYIDTIEVYNNRTY--SWNIW 477 (480)
T ss_pred EECCEEEEECCcCCC----cccceEEEEECCCC--eEEec
Confidence 999999999998643 34578999999998 99753
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.2e-35 Score=275.31 Aligned_cols=254 Identities=14% Similarity=0.133 Sum_probs=194.4
Q ss_pred cccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC--CeeeecCCCCCCCCCeeEEEECCE
Q 042957 64 VLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS--NEWTRCAPLSVPRYDFACTVCDNK 141 (371)
Q Consensus 64 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~~r~~~~~~~~~~~ 141 (371)
.++++.++++++.|||+||.+..... ..........+++++|+... .+|..+++||.+|..+++++++++
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~--------~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~ 74 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDP--------LAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENG 74 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCc--------hhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCE
Confidence 46788899999999999998643210 00011234567899886332 279999999999998989999999
Q ss_pred EEEEcCCCCCCCCCCCceEEEEeCCCCce----EeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 142 IYVAGGKSNLFSAKGTASAEVYHPELDQW----TPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 142 lyv~GG~~~~~~~~~~~~~~~yd~~t~~W----~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
||++||... ...++++++||+.+++| +.+++||.+|..+++++++++|||+||..... ..++++
T Consensus 75 lyviGG~~~---~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~---------~~~~v~ 142 (323)
T TIGR03548 75 IYYIGGSNS---SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK---------PSNKSY 142 (323)
T ss_pred EEEEcCCCC---CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc---------cCceEE
Confidence 999999863 34578999999999988 78899999999999999999999999975432 357899
Q ss_pred EEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCC
Q 042957 218 VYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTED 297 (371)
Q Consensus 218 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~ 297 (371)
+||+.+++|+.+++++...+..+.+++++++||++||.......++++||+++++|+.+ ++|+..
T Consensus 143 ~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~-----~~~~~~---------- 207 (323)
T TIGR03548 143 LFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV-----ADPTTD---------- 207 (323)
T ss_pred EEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC-----CCCCCC----------
Confidence 99999999999998875444456778899999999998655456789999999999999 555321
Q ss_pred CCCceeeeee-EeeeCCeEEEEcceeeccc----------------------------ccceeeEEEEeecccccccccc
Q 042957 298 WPPIQRLYLT-MAPIGTHLYFLAGYRMAGE----------------------------LARTMSMVHIFDTAAKSDAWRS 348 (371)
Q Consensus 298 ~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~----------------------------~~~~~~~v~~~d~~~~~~~W~~ 348 (371)
-.|..+..++ ++..+++|||+||.+.... ......++++||++++ +|+.
T Consensus 208 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~ 285 (323)
T TIGR03548 208 SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG--KWKS 285 (323)
T ss_pred CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC--eeeE
Confidence 0022343444 4445789999999864210 0012468999999998 9999
Q ss_pred cCcccc
Q 042957 349 FEPIVE 354 (371)
Q Consensus 349 ~~~~p~ 354 (371)
++.+|.
T Consensus 286 ~~~~p~ 291 (323)
T TIGR03548 286 IGNSPF 291 (323)
T ss_pred cccccc
Confidence 998874
No 14
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=294.85 Aligned_cols=219 Identities=15% Similarity=0.262 Sum_probs=188.5
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 187 (371)
..+++||+.+++|..++++|.+|..+++++++++||++||... .....+++++||+.+++|..+++||.+|..+++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~--~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNF--NNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCC--CCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 4689999999999999999999999999999999999999753 22346889999999999999999999999999999
Q ss_pred ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCC---------
Q 042957 188 WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKA--------- 258 (371)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~--------- 258 (371)
++++||++||..+.. ..+++++||+.+++|+.+++|+.++.. +++++++++||++||....
T Consensus 350 ~~g~IYviGG~~~~~---------~~~sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 IDDTIYAIGGQNGTN---------VERTIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred ECCEEEEECCcCCCC---------CCceEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCccccccccccc
Confidence 999999999986543 457899999999999999999988765 5788899999999997531
Q ss_pred ----------ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeeccccc
Q 042957 259 ----------WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELA 328 (371)
Q Consensus 259 ----------~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 328 (371)
..+.+++|||++++|+.+ ++|+.+ |..+++++++++||++||.++..
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v-----~~m~~~---------------r~~~~~~~~~~~IYv~GG~~~~~--- 476 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETL-----PNFWTG---------------TIRPGVVSHKDDIYVVCDIKDEK--- 476 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeec-----CCCCcc---------------cccCcEEEECCEEEEEeCCCCCC---
Confidence 246799999999999999 888765 99999999999999999986431
Q ss_pred ceeeEEEEeeccc-ccccccccCccccccccccccceeeE
Q 042957 329 RTMSMVHIFDTAA-KSDAWRSFEPIVEEGEKELCSHCCVV 367 (371)
Q Consensus 329 ~~~~~v~~~d~~~-~~~~W~~~~~~p~~~~~~~~~~~~~~ 367 (371)
.....++.|||++ + +|+.+++|| .++..+++++
T Consensus 477 ~~~~~ve~Ydp~~~~--~W~~~~~m~----~~r~~~~~~~ 510 (557)
T PHA02713 477 NVKTCIFRYNTNTYN--GWELITTTE----SRLSALHTIL 510 (557)
T ss_pred ccceeEEEecCCCCC--CeeEccccC----cccccceeEE
Confidence 2235789999999 7 999999999 4555555554
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.5e-35 Score=277.31 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=193.5
Q ss_pred ccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC--CCCeeeecCCCC-CCCCCeeEEEEC
Q 042957 63 HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV--KSNEWTRCAPLS-VPRYDFACTVCD 139 (371)
Q Consensus 63 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~ 139 (371)
.+|..+++++++++|||+||.. .+.+++||+ .+++|.++++|| .+|..+++++++
T Consensus 6 ~~~~~~~~~~~~~~vyv~GG~~----------------------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~ 63 (346)
T TIGR03547 6 VGFKNGTGAIIGDKVYVGLGSA----------------------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID 63 (346)
T ss_pred ccccCceEEEECCEEEEEcccc----------------------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC
Confidence 4577778889999999999974 256899996 578999999998 589999999999
Q ss_pred CEEEEEcCCCCCC---CCCCCceEEEEeCCCCceEeCC-CCCCCceeeEEE-EECCEEEEEecccCCCCCC---------
Q 042957 140 NKIYVAGGKSNLF---SAKGTASAEVYHPELDQWTPLP-NMSTLRYKCVGV-TWQGKIHVVSGFAQRADSD--------- 205 (371)
Q Consensus 140 ~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~-~~~~~lyv~GG~~~~~~~~--------- 205 (371)
++||++||..... ....++++++||+.+++|++++ ++|..|..++++ +++++||++||........
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 9999999985321 1124678999999999999997 467777777666 7899999999976321000
Q ss_pred C----------------CccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCc--cCeEEEEe
Q 042957 206 G----------------SVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAW--KGHIESYD 267 (371)
Q Consensus 206 ~----------------~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~~~yd 267 (371)
. .......+.+++||+.+++|+.+.+|+..+...++++.++++||++||..... ...++.||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~ 223 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYL 223 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEE
Confidence 0 00000136899999999999999999864444567889999999999974322 23455555
Q ss_pred --CCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccc-------------cceee
Q 042957 268 --GELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGEL-------------ARTMS 332 (371)
Q Consensus 268 --~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~-------------~~~~~ 332 (371)
+++++|+.+ ++|+.+- .-.+..|..+++++++++|||+||....+.. .....
T Consensus 224 ~~~~~~~W~~~-----~~m~~~r--------~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (346)
T TIGR03547 224 FTGGKLEWNKL-----PPLPPPK--------SSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAW 290 (346)
T ss_pred ecCCCceeeec-----CCCCCCC--------CCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCcee
Confidence 577899999 7775430 0001224567788899999999998632110 01235
Q ss_pred EEEEeecccccccccccCccccccccccccceeeE
Q 042957 333 MVHIFDTAAKSDAWRSFEPIVEEGEKELCSHCCVV 367 (371)
Q Consensus 333 ~v~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 367 (371)
++++||++++ +|+.+++|| .++..|++++
T Consensus 291 ~~e~yd~~~~--~W~~~~~lp----~~~~~~~~~~ 319 (346)
T TIGR03547 291 SSEVYALDNG--KWSKVGKLP----QGLAYGVSVS 319 (346)
T ss_pred EeeEEEecCC--cccccCCCC----CCceeeEEEE
Confidence 7899999988 999999999 4555566543
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=246.86 Aligned_cols=266 Identities=15% Similarity=0.227 Sum_probs=213.1
Q ss_pred EEEeeecCCCCCCCccccceeEEeCCCCceeccCC--------CCcccccccccceEEEEECCEEEEEcCcccccCCCCC
Q 042957 21 ILASFCLREPGPRSNISNWLASYNPSNNTWSHVSH--------IPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHN 92 (371)
Q Consensus 21 i~~g~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--------~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 92 (371)
-.+|+|.|+....... -++..++..+-+|.++++ .+-+..+.-|++|+++..++++||.||++.
T Consensus 28 SFGGYCsGedy~~~~p-iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND------- 99 (392)
T KOG4693|consen 28 SFGGYCSGEDYDAKDP-IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRND------- 99 (392)
T ss_pred ecCCcccccccccCCc-ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccC-------
Confidence 3488888876544333 357899999999999976 222334567999999999999999999973
Q ss_pred CCCCCccccccccccceEEEEECCCCeeeec---CCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc
Q 042957 93 SDESDDFVDAYDKVLAWVLRYNVKSNEWTRC---APLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ 169 (371)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 169 (371)
.....+.++.||+++++|.+. .-+|..|.+|++++.++.+|||||+..+ ..+.+++++++|..|.+
T Consensus 100 ----------~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~-a~~FS~d~h~ld~~Tmt 168 (392)
T KOG4693|consen 100 ----------DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED-AQRFSQDTHVLDFATMT 168 (392)
T ss_pred ----------cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH-HHhhhccceeEecccee
Confidence 335688999999999999775 3578899999999999999999999753 45567899999999999
Q ss_pred eEeCC---CCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccc---cCCCCCCeEE
Q 042957 170 WTPLP---NMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMW---QLDIPPNQIV 243 (371)
Q Consensus 170 W~~~~---~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~---~~~~~~~~~~ 243 (371)
|+.+. ..|.-|..|+++++++.+|||||+.+....-.....++.+.+..+|++|..|...++.+ ..++ .|++.
T Consensus 169 Wr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-SHS~f 247 (392)
T KOG4693|consen 169 WREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-SHSTF 247 (392)
T ss_pred eeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-ccceE
Confidence 99875 45677888999999999999999987665333333356788999999999999885443 3333 46888
Q ss_pred EECCEEEEEcCCCCC---ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcc
Q 042957 244 EVDNRLFSSGDCLKA---WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAG 320 (371)
Q Consensus 244 ~~~~~iyv~GG~~~~---~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG 320 (371)
+++++||+|||++.. ..++++.|||.+..|..|. .--.. |.+|.-+++++.++++|+|||
T Consensus 248 vYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~-----~~Gk~------------P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 248 VYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS-----VRGKY------------PSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred EEcceEEEecccchhhhhhhcceeecccccchheeee-----ccCCC------------CCcccceeEEEECCEEEEecC
Confidence 999999999998643 4589999999999999993 21111 566999999999999999999
Q ss_pred eee
Q 042957 321 YRM 323 (371)
Q Consensus 321 ~~~ 323 (371)
..-
T Consensus 311 TsP 313 (392)
T KOG4693|consen 311 TSP 313 (392)
T ss_pred CCC
Confidence 765
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=4.3e-34 Score=269.69 Aligned_cols=274 Identities=16% Similarity=0.207 Sum_probs=196.9
Q ss_pred ceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC--CCeeeecCCC
Q 042957 49 TWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK--SNEWTRCAPL 126 (371)
Q Consensus 49 ~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~ 126 (371)
.++.+++||. +|..+++++++++|||+||.. ...+++||+. +++|..++++
T Consensus 18 ~~~~l~~lP~-----~~~~~~~~~~~~~iyv~gG~~----------------------~~~~~~~d~~~~~~~W~~l~~~ 70 (376)
T PRK14131 18 NAEQLPDLPV-----PFKNGTGAIDNNTVYVGLGSA----------------------GTSWYKLDLNAPSKGWTKIAAF 70 (376)
T ss_pred ecccCCCCCc-----CccCCeEEEECCEEEEEeCCC----------------------CCeEEEEECCCCCCCeEECCcC
Confidence 4677888874 456668888999999999974 2358899986 4789999998
Q ss_pred C-CCCCCeeEEEECCEEEEEcCCCCCCC---CCCCceEEEEeCCCCceEeCCC-CCCCceeeEEEE-ECCEEEEEecccC
Q 042957 127 S-VPRYDFACTVCDNKIYVAGGKSNLFS---AKGTASAEVYHPELDQWTPLPN-MSTLRYKCVGVT-WQGKIHVVSGFAQ 200 (371)
Q Consensus 127 ~-~~r~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~~~yd~~t~~W~~~~~-~p~~~~~~~~~~-~~~~lyv~GG~~~ 200 (371)
| .+|..++++.++++||++||...... ...++++++||+.+++|+.+++ +|..+.++++++ .+++||++||...
T Consensus 71 p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~ 150 (376)
T PRK14131 71 PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNK 150 (376)
T ss_pred CCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCH
Confidence 7 58999999999999999999863111 1346789999999999999986 467777677665 8999999999753
Q ss_pred CCCCC-------------------------CCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCC
Q 042957 201 RADSD-------------------------GSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDC 255 (371)
Q Consensus 201 ~~~~~-------------------------~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~ 255 (371)
..... ....+...+.+++||+.+++|+.+.++|.++...++++.++++||++||.
T Consensus 151 ~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 151 NIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred HHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 20000 00000023689999999999999998886444556788899999999996
Q ss_pred CCC--ccCe--EEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccc----
Q 042957 256 LKA--WKGH--IESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGEL---- 327 (371)
Q Consensus 256 ~~~--~~~~--~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~---- 327 (371)
... .... .+.||+++++|+.+ ++|+.+- ....+..+.++.++.++++|||+||....+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~W~~~-----~~~p~~~-------~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~ 298 (376)
T PRK14131 231 IKPGLRTDAVKQGKFTGNNLKWQKL-----PDLPPAP-------GGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQ 298 (376)
T ss_pred ECCCcCChhheEEEecCCCcceeec-----CCCCCCC-------cCCcCCccceEeceeECCEEEEeeccCCCCChhhhh
Confidence 332 2223 34568899999999 7776430 00001112334467789999999998643210
Q ss_pred ---------cceeeEEEEeecccccccccccCccccccccccccceeeE
Q 042957 328 ---------ARTMSMVHIFDTAAKSDAWRSFEPIVEEGEKELCSHCCVV 367 (371)
Q Consensus 328 ---------~~~~~~v~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~ 367 (371)
......+++||++++ +|+.++.|| .++..|+|++
T Consensus 299 ~~~~~~~~~~~~~~~~e~yd~~~~--~W~~~~~lp----~~r~~~~av~ 341 (376)
T PRK14131 299 NGKLYAHEGLKKSWSDEIYALVNG--KWQKVGELP----QGLAYGVSVS 341 (376)
T ss_pred cCCcccccCCcceeehheEEecCC--cccccCcCC----CCccceEEEE
Confidence 011246889999998 999999999 4666676654
No 18
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=243.62 Aligned_cols=262 Identities=17% Similarity=0.276 Sum_probs=210.4
Q ss_pred ccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCC-------------CCCC
Q 042957 63 HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAP-------------LSVP 129 (371)
Q Consensus 63 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-------------~~~~ 129 (371)
+.|..|+++.++.+||-|||+....+. ..+..-+|..+|..+-.|.++++ .|-.
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy-------------~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyq 78 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDY-------------DAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQ 78 (392)
T ss_pred cccccceeeeecceEEecCCccccccc-------------ccCCcceeEEeeccceeEEecCcccccccccCCCCccchh
Confidence 348899999999999999998743322 33445589999999999999876 2345
Q ss_pred CCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeC---CCCCCCceeeEEEEECCEEEEEecccCCCCCCC
Q 042957 130 RYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPL---PNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDG 206 (371)
Q Consensus 130 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 206 (371)
|++|.++.+++++|++||+.. ....-+.++.||+++++|.+. ..+|.+|.+|++++.++.+|||||+.++...
T Consensus 79 RYGHtvV~y~d~~yvWGGRND--~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~-- 154 (392)
T KOG4693|consen 79 RYGHTVVEYQDKAYVWGGRND--DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQR-- 154 (392)
T ss_pred hcCceEEEEcceEEEEcCccC--cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHh--
Confidence 999999999999999999974 234457899999999999875 3589999999999999999999999876543
Q ss_pred CccccccCeeEEEECCCCceeeccccccCCC--CCCeEEEECCEEEEEcCCCCC----------ccCeEEEEeCCCCceE
Q 042957 207 SVHFTERSSAEVYDTQAGKWDLVARMWQLDI--PPNQIVEVDNRLFSSGDCLKA----------WKGHIESYDGELNMWD 274 (371)
Q Consensus 207 ~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~--~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~yd~~~~~W~ 274 (371)
..+++..+|+.|.+|+.+.....+.+ -.|+++++++.+|||||.... +.+.+..+|+.+..|.
T Consensus 155 -----FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~ 229 (392)
T KOG4693|consen 155 -----FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT 229 (392)
T ss_pred -----hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccc
Confidence 56789999999999999976654432 346788899999999997432 2367999999999999
Q ss_pred eecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccccccccccCcccc
Q 042957 275 EVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEPIVE 354 (371)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~~p~ 354 (371)
+. ++-+.. |..|..|++..++++||+|||+... .+....++|+|||.+. .|..|..--.
T Consensus 230 r~-----p~~~~~------------P~GRRSHS~fvYng~~Y~FGGYng~--ln~HfndLy~FdP~t~--~W~~I~~~Gk 288 (392)
T KOG4693|consen 230 RT-----PENTMK------------PGGRRSHSTFVYNGKMYMFGGYNGT--LNVHFNDLYCFDPKTS--MWSVISVRGK 288 (392)
T ss_pred cC-----CCCCcC------------CCcccccceEEEcceEEEecccchh--hhhhhcceeecccccc--hheeeeccCC
Confidence 97 333222 6779999999999999999999765 4467899999999998 9999954332
Q ss_pred ccccccccceeeEE
Q 042957 355 EGEKELCSHCCVVQ 368 (371)
Q Consensus 355 ~~~~~~~~~~~~~~ 368 (371)
.. ..+..|||++.
T Consensus 289 ~P-~aRRRqC~~v~ 301 (392)
T KOG4693|consen 289 YP-SARRRQCSVVS 301 (392)
T ss_pred CC-CcccceeEEEE
Confidence 11 35566888874
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=278.48 Aligned_cols=211 Identities=22% Similarity=0.412 Sum_probs=182.4
Q ss_pred CccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEE
Q 042957 34 SNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRY 113 (371)
Q Consensus 34 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 113 (371)
....+++++||+.+++|..+++|+ .+|..|++++++++||++||.. .....+++++|
T Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~-----~~R~~~~~~~~~~~lyv~GG~~------------------~~~~~~~v~~y 363 (534)
T PHA03098 307 NLSVNSVVSYDTKTKSWNKVPELI-----YPRKNPGVTVFNNRIYVIGGIY------------------NSISLNTVESW 363 (534)
T ss_pred CCeeccEEEEeCCCCeeeECCCCC-----cccccceEEEECCEEEEEeCCC------------------CCEecceEEEE
Confidence 345678999999999999999887 5689999999999999999985 22457889999
Q ss_pred ECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEE
Q 042957 114 NVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIH 193 (371)
Q Consensus 114 d~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~ly 193 (371)
|+.+++|+.++++|.+|..++++.++++||++||... ....++++++||+.+++|+.++++|.+|..++++.++++||
T Consensus 364 d~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iy 441 (534)
T PHA03098 364 KPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK--NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIY 441 (534)
T ss_pred cCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCC--CCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEE
Confidence 9999999999999999999999999999999999754 22347899999999999999999999999999999999999
Q ss_pred EEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCc-cCeEEEEeCCCCc
Q 042957 194 VVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAW-KGHIESYDGELNM 272 (371)
Q Consensus 194 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~yd~~~~~ 272 (371)
|+||........ ..+.+++||+++++|+.++.++.++.. ++++.++++||++||..... .+++++||+++++
T Consensus 442 v~GG~~~~~~~~------~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 442 VIGGISYIDNIK------VYNIVESYNPVTNKWTELSSLNFPRIN-ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EECCccCCCCCc------ccceEEEecCCCCceeeCCCCCccccc-ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 999976543210 246799999999999999988877654 57788899999999985433 5789999999999
Q ss_pred eEee
Q 042957 273 WDEV 276 (371)
Q Consensus 273 W~~~ 276 (371)
|+.+
T Consensus 515 W~~~ 518 (534)
T PHA03098 515 WTLF 518 (534)
T ss_pred EEec
Confidence 9999
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=270.33 Aligned_cols=193 Identities=25% Similarity=0.394 Sum_probs=171.0
Q ss_pred ccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE
Q 042957 35 NISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN 114 (371)
Q Consensus 35 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 114 (371)
...+.+++|||.+++|..+++|+ .+|..+++++++++||++||.. ..+.+++||
T Consensus 284 ~~~~~v~~Ydp~~~~W~~~~~m~-----~~r~~~~~v~~~~~iYviGG~~---------------------~~~sve~yd 337 (480)
T PHA02790 284 EIHNNAIAVNYISNNWIPIPPMN-----SPRLYASGVPANNKLYVVGGLP---------------------NPTSVERWF 337 (480)
T ss_pred CcCCeEEEEECCCCEEEECCCCC-----chhhcceEEEECCEEEEECCcC---------------------CCCceEEEE
Confidence 35678999999999999999998 5688899999999999999974 125689999
Q ss_pred CCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEE
Q 042957 115 VKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHV 194 (371)
Q Consensus 115 ~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv 194 (371)
+.+++|..+++||.+|..+++++++++||++||.+.. .+.+++||+.+++|+.+++|+.+|..+++++++++||+
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv 412 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFL 412 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEE
Confidence 9999999999999999999999999999999998531 36799999999999999999999999999999999999
Q ss_pred EecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCC-CccCeEEEEeCCCCce
Q 042957 195 VSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLK-AWKGHIESYDGELNMW 273 (371)
Q Consensus 195 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~yd~~~~~W 273 (371)
+|| .+++||+++++|+.+++|+.++.. +++++++++||++||... ...+.+++||+++++|
T Consensus 413 ~GG-----------------~~e~ydp~~~~W~~~~~m~~~r~~-~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 413 VGR-----------------NAEFYCESSNTWTLIDDPIYPRDN-PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ECC-----------------ceEEecCCCCcEeEcCCCCCCccc-cEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 996 257899999999999999887764 588999999999999753 2346799999999999
Q ss_pred Eee
Q 042957 274 DEV 276 (371)
Q Consensus 274 ~~~ 276 (371)
+..
T Consensus 475 ~~~ 477 (480)
T PHA02790 475 NIW 477 (480)
T ss_pred Eec
Confidence 987
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=4.2e-29 Score=222.36 Aligned_cols=316 Identities=16% Similarity=0.193 Sum_probs=229.8
Q ss_pred EEEEeeecCCCCCCCccccceeEEeCCCCceeccCCCCcccccccccceEEEEEC-CEEEEEcCcccccCCCCCCCCCCc
Q 042957 20 LILASFCLREPGPRSNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLG-DSVYIIGGLLCHKERAHNSDESDD 98 (371)
Q Consensus 20 ~i~~g~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~ 98 (371)
+|++|-... ++...+.|+++.||..+++|.++..... |.+|..|++|++- |.+|+|||...+.++
T Consensus 82 ilfGGEf~n--gqkT~vYndLy~Yn~k~~eWkk~~spn~---P~pRsshq~va~~s~~l~~fGGEfaSPnq--------- 147 (521)
T KOG1230|consen 82 ILFGGEFYN--GQKTHVYNDLYSYNTKKNEWKKVVSPNA---PPPRSSHQAVAVPSNILWLFGGEFASPNQ--------- 147 (521)
T ss_pred EEecceeec--ceeEEEeeeeeEEeccccceeEeccCCC---cCCCccceeEEeccCeEEEeccccCCcch---------
Confidence 333443333 3456788999999999999999875433 2579999999985 899999998654433
Q ss_pred cccccccccceEEEEECCCCeeeecC--CCCCCCCCeeEEEECCEEEEEcCCCC-CCCCCCCceEEEEeCCCCceEeCCC
Q 042957 99 FVDAYDKVLAWVLRYNVKSNEWTRCA--PLSVPRYDFACTVCDNKIYVAGGKSN-LFSAKGTASAEVYHPELDQWTPLPN 175 (371)
Q Consensus 99 ~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~yd~~t~~W~~~~~ 175 (371)
.+.....++|+||+.+++|+++. ..|.||++|-+++...+|++|||... .....+.+++++||+.+-+|+++.+
T Consensus 148 ---~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 148 ---EQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred ---hhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 24455789999999999999974 56889999999999999999999743 3355678999999999999999864
Q ss_pred ---CCCCceeeEEEEE-CCEEEEEecccCCCCCCCCccccccCeeEEEECCC-----Cceeeccc---cccCCCCCCeEE
Q 042957 176 ---MSTLRYKCVGVTW-QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQA-----GKWDLVAR---MWQLDIPPNQIV 243 (371)
Q Consensus 176 ---~p~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t-----~~W~~~~~---~~~~~~~~~~~~ 243 (371)
-|.+|.++..++. ++.|||+||++......+....+..++++.+++++ ..|.++.+ .|.++.+...++
T Consensus 225 sga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v 304 (521)
T KOG1230|consen 225 SGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV 304 (521)
T ss_pred CCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE
Confidence 4789999998887 99999999997665433333344678899999988 66888854 355555543344
Q ss_pred EECCEEEEEcCCCC----------CccCeEEEEeCCCCceEeecCccc---------------ccCCCCcccCCC-----
Q 042957 244 EVDNRLFSSGDCLK----------AWKGHIESYDGELNMWDEVNGSCL---------------QTLSSPVSTSST----- 293 (371)
Q Consensus 244 ~~~~~iyv~GG~~~----------~~~~~~~~yd~~~~~W~~~~~~~~---------------~~l~~~~~~~~~----- 293 (371)
.-+++-|.|||.-. .+.++++.||+..++|....-+.. ..+..++.|..+
T Consensus 305 a~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~ 384 (521)
T KOG1230|consen 305 AKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSRKDQEKELQRPTVGPNTKDLEV 384 (521)
T ss_pred ecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccccccccccccccccCcccCCCcccccc
Confidence 45779999999622 245899999999999987500000 001111111110
Q ss_pred -----------------------CCCCCC-----------------CceeeeeeEeeeCCeEEEEcceeecccccceeeE
Q 042957 294 -----------------------NTEDWP-----------------PIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSM 333 (371)
Q Consensus 294 -----------------------~~~~~~-----------------p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 333 (371)
-.+.+| |.+|....+++-.+.+||.||.-..+.....+.+
T Consensus 385 ~~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~gGi~ee~d~q~tl~d 464 (521)
T KOG1230|consen 385 QAVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPRMDDELSVKVGVLYIGGGIFEERDWQPTLRD 464 (521)
T ss_pred eecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCccCCCccCcccceEEecCCCcccccccchHHH
Confidence 011111 4677788888888999999987666666677888
Q ss_pred EEEeecccccccccccCccc
Q 042957 334 VHIFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 334 v~~~d~~~~~~~W~~~~~~p 353 (371)
.|..|+.++ .+|+.+..+.
T Consensus 465 fyal~~hr~-~~~K~L~~~s 483 (521)
T KOG1230|consen 465 FYALDLHRN-EKGKQLKTKS 483 (521)
T ss_pred Hhhhhhhhh-hhhhhhccCC
Confidence 888888776 4699887665
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=5e-28 Score=233.74 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=201.6
Q ss_pred ccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecC---CCCCCCCCeeEEEEC
Q 042957 63 HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCA---PLSVPRYDFACTVCD 139 (371)
Q Consensus 63 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~ 139 (371)
.+|+.|+++..++++|||||....... ... ++|++|..+..|.... ..|.+|++|.++.++
T Consensus 59 ~~R~~hs~~~~~~~~~vfGG~~~~~~~---------------~~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~ 122 (482)
T KOG0379|consen 59 IPRAGHSAVLIGNKLYVFGGYGSGDRL---------------TDL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG 122 (482)
T ss_pred chhhccceeEECCEEEEECCCCCCCcc---------------ccc-eeEEeecCCcccccccccCCCCCcccceeEEEEC
Confidence 569999999999999999998633211 111 6999999999997753 467889999999999
Q ss_pred CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCC---CCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCee
Q 042957 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLP---NMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSA 216 (371)
Q Consensus 140 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v 216 (371)
++||+|||.+. .....++++.||+.+.+|..+. ..|.+|..|++++++++||||||...... ..+++
T Consensus 123 ~~l~lfGG~~~--~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~--------~~ndl 192 (482)
T KOG0379|consen 123 DKLYLFGGTDK--KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD--------SLNDL 192 (482)
T ss_pred CeEEEEccccC--CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc--------ceeee
Confidence 99999999985 3445789999999999999874 46889999999999999999999887664 46899
Q ss_pred EEEECCCCceeeccc---cccCCCCCCeEEEECCEEEEEcCCC--CCccCeEEEEeCCCCceEeecCcccccCCCCcccC
Q 042957 217 EVYDTQAGKWDLVAR---MWQLDIPPNQIVEVDNRLFSSGDCL--KAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTS 291 (371)
Q Consensus 217 ~~yd~~t~~W~~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~ 291 (371)
++||+++.+|.++.. .|.++ ..|++++++++++++||.. ....+|++.+|+.+.+|..+ ......
T Consensus 193 ~i~d~~~~~W~~~~~~g~~P~pR-~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-----~~~g~~---- 262 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGEAPSPR-YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-----PTGGDL---- 262 (482)
T ss_pred eeeccccccceecccCCCCCCCC-CCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-----cccCCC----
Confidence 999999999998843 34444 4578999999999998874 45679999999999999977 433332
Q ss_pred CCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccccccccccCccc
Q 042957 292 STNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 292 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~~p 353 (371)
|.+|.+|.++..+++++++||.... ....+.++|.++.++. .|..+....
T Consensus 263 --------p~~R~~h~~~~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~~--~w~~~~~~~ 312 (482)
T KOG0379|consen 263 --------PSPRSGHSLTVSGDHLLLFGGGTDP--KQEPLGDLYGLDLETL--VWSKVESVG 312 (482)
T ss_pred --------CCCcceeeeEEECCEEEEEcCCccc--cccccccccccccccc--ceeeeeccc
Confidence 6779999999999999999998764 1126889999999977 999998777
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=220.69 Aligned_cols=236 Identities=20% Similarity=0.282 Sum_probs=192.7
Q ss_pred ceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCC
Q 042957 39 WLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSN 118 (371)
Q Consensus 39 ~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 118 (371)
+++.+|..+..|.........+ .+|.+|.+++++++||+|||.+. .....++++.||+.++
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p--~~r~g~~~~~~~~~l~lfGG~~~-----------------~~~~~~~l~~~d~~t~ 149 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEP--SPRYGHSLSAVGDKLYLFGGTDK-----------------KYRNLNELHSLDLSTR 149 (482)
T ss_pred eeEEeecCCcccccccccCCCC--CcccceeEEEECCeEEEEccccC-----------------CCCChhheEeccCCCC
Confidence 7999999999999987655443 67999999999999999999973 1234789999999999
Q ss_pred eeeecC---CCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCC---CCCCCceeeEEEEECCEE
Q 042957 119 EWTRCA---PLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLP---NMSTLRYKCVGVTWQGKI 192 (371)
Q Consensus 119 ~W~~~~---~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~~~l 192 (371)
+|..+. .+|.+|.+|++++++++||||||.+.. ....+++++||+.+.+|.++. +.|.+|.+|+++++++++
T Consensus 150 ~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~--~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 150 TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT--GDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKL 227 (482)
T ss_pred cEEEecCcCCCCCCcccceEEEECCEEEEECCccCc--ccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeE
Confidence 998864 468899999999999999999999753 337899999999999999874 578899999999999999
Q ss_pred EEEecccCCCCCCCCccccccCeeEEEECCCCceeecc---ccccCCCCCCeEEEECCEEEEEcCCCCC---ccCeEEEE
Q 042957 193 HVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVA---RMWQLDIPPNQIVEVDNRLFSSGDCLKA---WKGHIESY 266 (371)
Q Consensus 193 yv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~y 266 (371)
+|+||...... ++++++++|+.+..|..+. ..|.++.. |.+++.+++++++||.... ...+++.|
T Consensus 228 ~v~gG~~~~~~--------~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~-h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l 298 (482)
T KOG0379|consen 228 LVFGGGDDGDV--------YLNDVHILDLSTWEWKLLPTGGDLPSPRSG-HSLTVSGDHLLLFGGGTDPKQEPLGDLYGL 298 (482)
T ss_pred EEEeccccCCc--------eecceEeeecccceeeeccccCCCCCCcce-eeeEEECCEEEEEcCCcccccccccccccc
Confidence 99999883332 7899999999999999664 34566654 5677999999999998663 56899999
Q ss_pred eCCCCceEeecCcccccCC-CCcccCCCCCCCCCCceeeeeeEeeeCC----eEEEEcce
Q 042957 267 DGELNMWDEVNGSCLQTLS-SPVSTSSTNTEDWPPIQRLYLTMAPIGT----HLYFLAGY 321 (371)
Q Consensus 267 d~~~~~W~~~~~~~~~~l~-~~~~~~~~~~~~~~p~~r~~~~~~~~~~----~l~v~GG~ 321 (371)
|.+++.|..+ .... .. |.+|..++.+.+.. .+.++||.
T Consensus 299 ~~~~~~w~~~-----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (482)
T KOG0379|consen 299 DLETLVWSKV-----ESVGVVR------------PSPRLGHAAELIDELGKDGLGILGGN 341 (482)
T ss_pred cccccceeee-----ecccccc------------ccccccccceeeccCCccceeeecCc
Confidence 9999999999 3333 22 56688888777644 34445553
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=206.56 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=197.3
Q ss_pred cccccceEEEEE--CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeec--CCCCCCCCCeeEEE
Q 042957 62 NHVLKGFSIVSL--GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRC--APLSVPRYDFACTV 137 (371)
Q Consensus 62 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~r~~~~~~~ 137 (371)
|.+|...++++. .+.|++|||...+.- .-...+++|+||...++|+++ +..|.||+.|.+++
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~ngq--------------kT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va 129 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYNGQ--------------KTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVA 129 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeecce--------------eEEEeeeeeEEeccccceeEeccCCCcCCCccceeEE
Confidence 467899998887 468999999864431 234688999999999999987 56688999998887
Q ss_pred E-CCEEEEEcCCCCCC---CCCCCceEEEEeCCCCceEeCC--CCCCCceeeEEEEECCEEEEEecccCCCCCCCCcccc
Q 042957 138 C-DNKIYVAGGKSNLF---SAKGTASAEVYHPELDQWTPLP--NMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFT 211 (371)
Q Consensus 138 ~-~~~lyv~GG~~~~~---~~~~~~~~~~yd~~t~~W~~~~--~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 211 (371)
+ .+.+|+|||.-... .....+++|+||..+++|+++. .-|.+|.+|-++....+|+||||+.... +.+.
T Consensus 130 ~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~n-----r~y~ 204 (521)
T KOG1230|consen 130 VPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSN-----RDYI 204 (521)
T ss_pred eccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCC-----CceE
Confidence 6 48999999964321 2334679999999999999985 4789999999999999999999987653 2234
Q ss_pred ccCeeEEEECCCCceeecccc---ccCCCCCCeEEEE-CCEEEEEcCCCCC----------ccCeEEEEeCCC-----Cc
Q 042957 212 ERSSAEVYDTQAGKWDLVARM---WQLDIPPNQIVEV-DNRLFSSGDCLKA----------WKGHIESYDGEL-----NM 272 (371)
Q Consensus 212 ~~~~v~~yd~~t~~W~~~~~~---~~~~~~~~~~~~~-~~~iyv~GG~~~~----------~~~~~~~yd~~~-----~~ 272 (371)
++|++++||+.+=+|.++.+- |.++.+ +++++. ++.|||+||+... ..+|++.++++. -.
T Consensus 205 YyNDvy~FdLdtykW~Klepsga~PtpRSG-cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~ 283 (521)
T KOG1230|consen 205 YYNDVYAFDLDTYKWSKLEPSGAGPTPRSG-CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWV 283 (521)
T ss_pred EeeeeEEEeccceeeeeccCCCCCCCCCCc-ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCccee
Confidence 889999999999999999642 445554 456666 9999999997321 236899999999 77
Q ss_pred eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeee-CCeEEEEcceeeccc-----ccceeeEEEEeecccccccc
Q 042957 273 WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPI-GTHLYFLAGYRMAGE-----LARTMSMVHIFDTAAKSDAW 346 (371)
Q Consensus 273 W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~-----~~~~~~~v~~~d~~~~~~~W 346 (371)
|..+ .+. +.+|.+|.++++++. +++-|.|||..+.-+ -..+.+++|.||+..+ +|
T Consensus 284 W~kv-----kp~------------g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n--rW 344 (521)
T KOG1230|consen 284 WTKV-----KPS------------GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRN--RW 344 (521)
T ss_pred Eeec-----cCC------------CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccc--hh
Confidence 9999 333 344888999998887 559999999987421 2357899999999998 99
Q ss_pred ccc
Q 042957 347 RSF 349 (371)
Q Consensus 347 ~~~ 349 (371)
.+.
T Consensus 345 ~~~ 347 (521)
T KOG1230|consen 345 SEG 347 (521)
T ss_pred hHh
Confidence 887
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=4.1e-25 Score=201.62 Aligned_cols=280 Identities=17% Similarity=0.243 Sum_probs=210.2
Q ss_pred CCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeee---
Q 042957 46 SNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTR--- 122 (371)
Q Consensus 46 ~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~--- 122 (371)
..-+|+++.....+. +.+|++|.++++..-|.||||-+ .....++.+||..+++|..
T Consensus 15 ~~~rWrrV~~~tGPv-PrpRHGHRAVaikELiviFGGGN-------------------EGiiDELHvYNTatnqWf~Pav 74 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPV-PRPRHGHRAVAIKELIVIFGGGN-------------------EGIIDELHVYNTATNQWFAPAV 74 (830)
T ss_pred cccceEEEecccCCC-CCccccchheeeeeeEEEecCCc-------------------ccchhhhhhhccccceeecchh
Confidence 345799987665433 47899999999999999999975 3457889999999999965
Q ss_pred cCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCC-------CCCCCceeeEEEEECCEEEEE
Q 042957 123 CAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLP-------NMSTLRYKCVGVTWQGKIHVV 195 (371)
Q Consensus 123 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~~~~~~~~~~~~~lyv~ 195 (371)
..+.|.+...|..+-.+.+||+|||... ..++.++++.+....-.|+++. .+|-+|.+|+...+++|-|+|
T Consensus 75 rGDiPpgcAA~GfvcdGtrilvFGGMvE--YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlF 152 (830)
T KOG4152|consen 75 RGDIPPGCAAFGFVCDGTRILVFGGMVE--YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLF 152 (830)
T ss_pred cCCCCCchhhcceEecCceEEEEccEee--eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEe
Confidence 3578888888888888999999999875 5566777766655555677764 367889999999999999999
Q ss_pred ecccCCCCCC-CCccccccCeeEEEECCCC----ceeec---cccccCCCCCCeEEEE------CCEEEEEcCCCCCccC
Q 042957 196 SGFAQRADSD-GSVHFTERSSAEVYDTQAG----KWDLV---ARMWQLDIPPNQIVEV------DNRLFSSGDCLKAWKG 261 (371)
Q Consensus 196 GG~~~~~~~~-~~~~~~~~~~v~~yd~~t~----~W~~~---~~~~~~~~~~~~~~~~------~~~iyv~GG~~~~~~~ 261 (371)
||...+.+.. .+.+ .+++++++.++..+ .|+.. ..+|.++.. |.++++ -.++||+||-....+.
T Consensus 153 GGLaNdseDpknNvP-rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES-HTAViY~eKDs~~skmvvyGGM~G~RLg 230 (830)
T KOG4152|consen 153 GGLANDSEDPKNNVP-RYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES-HTAVIYTEKDSKKSKMVVYGGMSGCRLG 230 (830)
T ss_pred ccccccccCcccccc-hhhcceEEEEeccCCceEEEecccccCCCCCCccc-ceeEEEEeccCCcceEEEEccccccccc
Confidence 9986654322 2222 26789999888754 48755 455666665 455444 2379999999888899
Q ss_pred eEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeeccc----cc------cee
Q 042957 262 HIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGE----LA------RTM 331 (371)
Q Consensus 262 ~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~----~~------~~~ 331 (371)
|+|.+|+++-.|.+.+-.. .+|.+|.-|+++.+++++|||||..-.-. .+ +..
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G-----------------~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCT 293 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSG-----------------VAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCT 293 (830)
T ss_pred ceeEEecceeecccccccC-----------------CCCCCcccccceeecceeEEecceeeeeccccccccccceeeec
Confidence 9999999999999984332 33566999999999999999999643311 00 245
Q ss_pred eEEEEeecccccccccccCccccc---cccccccceeeEE
Q 042957 332 SMVHIFDTAAKSDAWRSFEPIVEE---GEKELCSHCCVVQ 368 (371)
Q Consensus 332 ~~v~~~d~~~~~~~W~~~~~~p~~---~~~~~~~~~~~~~ 368 (371)
+++-++++++. .|+.+-.--.+ -.+.+..||++.+
T Consensus 294 ssl~clNldt~--~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 294 SSLACLNLDTM--AWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred cceeeeeecch--heeeeeeccccccccccccccceeEEe
Confidence 67788999987 99988421111 1267789999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.6e-23 Score=191.18 Aligned_cols=247 Identities=19% Similarity=0.287 Sum_probs=184.4
Q ss_pred ccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE
Q 042957 35 NISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN 114 (371)
Q Consensus 35 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 114 (371)
-+..++..|+.++++|..-+--.+.+ .+-+.|+.+..+.+||+|||.... .+.++++|.+.
T Consensus 54 GiiDELHvYNTatnqWf~PavrGDiP--pgcAA~GfvcdGtrilvFGGMvEY-----------------GkYsNdLYELQ 114 (830)
T KOG4152|consen 54 GIIDELHVYNTATNQWFAPAVRGDIP--PGCAAFGFVCDGTRILVFGGMVEY-----------------GKYSNDLYELQ 114 (830)
T ss_pred cchhhhhhhccccceeecchhcCCCC--CchhhcceEecCceEEEEccEeee-----------------ccccchHHHhh
Confidence 35678999999999998654322222 345788899999999999999733 34577777666
Q ss_pred CCCCeeeecC-------CCCCCCCCeeEEEECCEEEEEcCCCCCC------CCCCCceEEEEeCCCC----ceEeC---C
Q 042957 115 VKSNEWTRCA-------PLSVPRYDFACTVCDNKIYVAGGKSNLF------SAKGTASAEVYHPELD----QWTPL---P 174 (371)
Q Consensus 115 ~~~~~W~~~~-------~~~~~r~~~~~~~~~~~lyv~GG~~~~~------~~~~~~~~~~yd~~t~----~W~~~---~ 174 (371)
.....|+++. ++|.||-+|+..++++|.|+|||..++- --.++++++++++.-+ .|... .
T Consensus 115 asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~G 194 (830)
T KOG4152|consen 115 ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYG 194 (830)
T ss_pred hhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccC
Confidence 6666787763 3578899999999999999999975431 1245788999888744 47654 4
Q ss_pred CCCCCceeeEEEEE------CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecc---ccccCCCCCCeEEEE
Q 042957 175 NMSTLRYKCVGVTW------QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVA---RMWQLDIPPNQIVEV 245 (371)
Q Consensus 175 ~~p~~~~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~ 245 (371)
.+|.+|..|.++++ ..++||+||.++- .+.+++.+|+++.+|.+.. ..|-++. -|+...+
T Consensus 195 v~P~pRESHTAViY~eKDs~~skmvvyGGM~G~----------RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRS-LHsa~~I 263 (830)
T KOG4152|consen 195 VLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC----------RLGDLWTLDLDTLTWNKPSLSGVAPLPRS-LHSATTI 263 (830)
T ss_pred CCCCCcccceeEEEEeccCCcceEEEEcccccc----------cccceeEEecceeecccccccCCCCCCcc-cccceee
Confidence 58999999998876 3479999998875 4689999999999998763 2233443 4688899
Q ss_pred CCEEEEEcCCC-------------CCc--cCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEee
Q 042957 246 DNRLFSSGDCL-------------KAW--KGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAP 310 (371)
Q Consensus 246 ~~~iyv~GG~~-------------~~~--~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~ 310 (371)
++++|||||-- ..+ .+.+-++|+.+..|+.+--.++. +.=.|.+|.+|++++
T Consensus 264 GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~e-------------d~tiPR~RAGHCAvA 330 (830)
T KOG4152|consen 264 GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLE-------------DNTIPRARAGHCAVA 330 (830)
T ss_pred cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccc-------------ccccccccccceeEE
Confidence 99999999941 111 35688899999999987211111 111366799999999
Q ss_pred eCCeEEEEcceeec
Q 042957 311 IGTHLYFLAGYRMA 324 (371)
Q Consensus 311 ~~~~l~v~GG~~~~ 324 (371)
++++|||.-|+++-
T Consensus 331 igtRlYiWSGRDGY 344 (830)
T KOG4152|consen 331 IGTRLYIWSGRDGY 344 (830)
T ss_pred eccEEEEEeccchh
Confidence 99999999998765
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.88 E-value=1.8e-20 Score=165.45 Aligned_cols=281 Identities=14% Similarity=0.193 Sum_probs=206.3
Q ss_pred CCCCCCCCCCCccCCCce--EEEEeeecCCCCCCCccccceeEEeCCC--CceeccCCCCcccccccccceEEEEECCEE
Q 042957 2 DSLTSSPSPPTERNPSGH--LILASFCLREPGPRSNISNWLASYNPSN--NTWSHVSHIPDLLENHVLKGFSIVSLGDSV 77 (371)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~i~~g~~~~~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~r~~~~~~~~~~~i 77 (371)
++||.+|.+-.......+ .+|+|....| .+++..|... ..|+++++.|- .+|.....++++++|
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G--------~afy~ldL~~~~k~W~~~a~FpG----~~rnqa~~a~~~~kL 95 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG--------TAFYVLDLKKPGKGWTKIADFPG----GARNQAVAAVIGGKL 95 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCC--------ccceehhhhcCCCCceEcccCCC----cccccchheeeCCeE
Confidence 478999988777644444 5666665555 4577778755 56999999984 568888999999999
Q ss_pred EEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCC-CCCCCCCeeEEEECC-EEEEEcCCCCCCC--
Q 042957 78 YIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAP-LSVPRYDFACTVCDN-KIYVAGGKSNLFS-- 153 (371)
Q Consensus 78 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~-~lyv~GG~~~~~~-- 153 (371)
|+|||.....+ ...+..+++++||+.+++|+++.. .|....++.++..++ +||++||......
T Consensus 96 yvFgG~Gk~~~-------------~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~ 162 (381)
T COG3055 96 YVFGGYGKSVS-------------SSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNG 162 (381)
T ss_pred EEeeccccCCC-------------CCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhh
Confidence 99999853332 245788999999999999999865 455667888888877 9999999753210
Q ss_pred -----------------------------CCCCceEEEEeCCCCceEeCCCCC-CCceeeEEEEECCEEEEEecccCCCC
Q 042957 154 -----------------------------AKGTASAEVYHPELDQWTPLPNMS-TLRYKCVGVTWQGKIHVVSGFAQRAD 203 (371)
Q Consensus 154 -----------------------------~~~~~~~~~yd~~t~~W~~~~~~p-~~~~~~~~~~~~~~lyv~GG~~~~~~ 203 (371)
......+..|++.+++|+.+...| .++++++++.-+++|.++.|.-..+=
T Consensus 163 yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGL 242 (381)
T COG3055 163 YFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGL 242 (381)
T ss_pred hHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCc
Confidence 112357889999999999998766 57888777777888999998765432
Q ss_pred CCCCccccccCeeEEEECC--CCceeeccccccCCCCCC-e-----EEEECCEEEEEcCCC-------------------
Q 042957 204 SDGSVHFTERSSAEVYDTQ--AGKWDLVARMWQLDIPPN-Q-----IVEVDNRLFSSGDCL------------------- 256 (371)
Q Consensus 204 ~~~~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~-~-----~~~~~~~iyv~GG~~------------------- 256 (371)
....+..++.. ..+|..+..+|.+....+ + .-..++++++.||..
T Consensus 243 --------Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl 314 (381)
T COG3055 243 --------RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGL 314 (381)
T ss_pred --------cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccch
Confidence 22345555554 568999988876543321 1 223478889998732
Q ss_pred -CCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEE
Q 042957 257 -KAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVH 335 (371)
Q Consensus 257 -~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~ 335 (371)
..+.++|++|| ++.|+.+ ..||.+ +.+.+++..+++||++||....+ ..+++|+
T Consensus 315 ~K~w~~~Vy~~d--~g~Wk~~-----GeLp~~---------------l~YG~s~~~nn~vl~IGGE~~~G---ka~~~v~ 369 (381)
T COG3055 315 SKSWNSEVYIFD--NGSWKIV-----GELPQG---------------LAYGVSLSYNNKVLLIGGETSGG---KATTRVY 369 (381)
T ss_pred hhhhhceEEEEc--CCceeee-----cccCCC---------------ccceEEEecCCcEEEEccccCCC---eeeeeEE
Confidence 22456899998 8899999 888754 88888999999999999998765 4566666
Q ss_pred Eeecc
Q 042957 336 IFDTA 340 (371)
Q Consensus 336 ~~d~~ 340 (371)
..-.+
T Consensus 370 ~l~~~ 374 (381)
T COG3055 370 SLSWD 374 (381)
T ss_pred EEEEc
Confidence 55443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=3e-18 Score=151.47 Aligned_cols=260 Identities=19% Similarity=0.217 Sum_probs=187.9
Q ss_pred eccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC--CeeeecCCCC-
Q 042957 51 SHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS--NEWTRCAPLS- 127 (371)
Q Consensus 51 ~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~- 127 (371)
.++|++|.+..+ -+-+..++.+||.=|.. -...+..|... ..|++++..|
T Consensus 28 ~~lPdlPvg~Kn-----G~Ga~ig~~~YVGLGs~----------------------G~afy~ldL~~~~k~W~~~a~FpG 80 (381)
T COG3055 28 GQLPDLPVGFKN-----GAGALIGDTVYVGLGSA----------------------GTAFYVLDLKKPGKGWTKIADFPG 80 (381)
T ss_pred ccCCCCCccccc-----cccceecceEEEEeccC----------------------CccceehhhhcCCCCceEcccCCC
Confidence 345666654432 25566788999987743 34567777754 5799999988
Q ss_pred CCCCCeeEEEECCEEEEEcCCCCCCC--CCCCceEEEEeCCCCceEeCCC-CCCCceeeEEEEECC-EEEEEecccCCCC
Q 042957 128 VPRYDFACTVCDNKIYVAGGKSNLFS--AKGTASAEVYHPELDQWTPLPN-MSTLRYKCVGVTWQG-KIHVVSGFAQRAD 203 (371)
Q Consensus 128 ~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~yd~~t~~W~~~~~-~p~~~~~~~~~~~~~-~lyv~GG~~~~~~ 203 (371)
.+|....+++++++||+|||...... .+..+++++||+.+++|+++.. .|.+...+.++.+++ +||++||.+....
T Consensus 81 ~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if 160 (381)
T COG3055 81 GARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIF 160 (381)
T ss_pred cccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhh
Confidence 56899999999999999999864332 4557899999999999999865 566777778888877 8999999876543
Q ss_pred CCCC-------------------------ccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCC
Q 042957 204 SDGS-------------------------VHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKA 258 (371)
Q Consensus 204 ~~~~-------------------------~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~ 258 (371)
.... .-+-....+..|||.++.|+.+...|-.....++++.-++++.++-|.-..
T Consensus 161 ~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKp 240 (381)
T COG3055 161 NGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKP 240 (381)
T ss_pred hhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecC
Confidence 3211 011234578899999999999997776665555666678889999998443
Q ss_pred c--cCeEEEEeCC--CCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeeccc--------
Q 042957 259 W--KGHIESYDGE--LNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGE-------- 326 (371)
Q Consensus 259 ~--~~~~~~yd~~--~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-------- 326 (371)
. +..+.+++.. .-+|..+ .++|.+. .-.+....++-.-..++++++.||....+.
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l-----~~lp~~~--------~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk 307 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKL-----SDLPAPI--------GSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGK 307 (381)
T ss_pred CccccceeEEEeccCceeeeec-----cCCCCCC--------CCCccccceeccceeCCeEEEecCCCChhHHHHHHhcc
Confidence 3 3445666554 5679999 6776552 111244566666778999999999766532
Q ss_pred -------ccceeeEEEEeecccccccccccCcccc
Q 042957 327 -------LARTMSMVHIFDTAAKSDAWRSFEPIVE 354 (371)
Q Consensus 327 -------~~~~~~~v~~~d~~~~~~~W~~~~~~p~ 354 (371)
.....+.||.|| .+ .|+.++.||+
T Consensus 308 ~~AH~Gl~K~w~~~Vy~~d--~g--~Wk~~GeLp~ 338 (381)
T COG3055 308 FYAHEGLSKSWNSEVYIFD--NG--SWKIVGELPQ 338 (381)
T ss_pred cccccchhhhhhceEEEEc--CC--ceeeecccCC
Confidence 224678999999 33 8999999995
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.46 E-value=1.8e-13 Score=125.80 Aligned_cols=273 Identities=19% Similarity=0.193 Sum_probs=177.1
Q ss_pred CCCCceeccCCCC-----cccccccccceEEEEECC--EEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 45 PSNNTWSHVSHIP-----DLLENHVLKGFSIVSLGD--SVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 45 ~~~~~W~~~~~~~-----~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
+.+.+|.+++... ...-+..|.+|.||...+ -||+.||++ +-+.+.++|.|+...
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd------------------G~~~l~DFW~Y~v~e 297 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD------------------GTQDLADFWAYSVKE 297 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc------------------cchhHHHHHhhcCCc
Confidence 5567888876543 112235689999999865 899999998 667899999999999
Q ss_pred Ceeeec---CCCCCCCCCeeEEEEC--CEEEEEcCCCCC---CCCCCCceEEEEeCCCCceEeCC------CCCCCceee
Q 042957 118 NEWTRC---APLSVPRYDFACTVCD--NKIYVAGGKSNL---FSAKGTASAEVYHPELDQWTPLP------NMSTLRYKC 183 (371)
Q Consensus 118 ~~W~~~---~~~~~~r~~~~~~~~~--~~lyv~GG~~~~---~~~~~~~~~~~yd~~t~~W~~~~------~~p~~~~~~ 183 (371)
++|..+ ...|..|..|-++..- .|||++|-+-.. ......+++|+||..++.|..+. .-|...+.|
T Consensus 298 ~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDH 377 (723)
T KOG2437|consen 298 NQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDH 377 (723)
T ss_pred ceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecc
Confidence 999876 3467889999998875 499999976322 12344678999999999998874 246678889
Q ss_pred EEEEECCE--EEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc----------CCCCCCeE--EEECCEE
Q 042957 184 VGVTWQGK--IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ----------LDIPPNQI--VEVDNRL 249 (371)
Q Consensus 184 ~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~----------~~~~~~~~--~~~~~~i 249 (371)
.+++.+++ |||+||..-+.... .+..++.||.....|+.+..--. .+. .+.| ..-++.+
T Consensus 378 qM~Vd~~k~~iyVfGGr~~~~~e~------~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~-ghcmE~~~~n~~l 450 (723)
T KOG2437|consen 378 QMCVDSEKHMIYVFGGRILTCNEP------QFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRI-GHCMEFHSKNRCL 450 (723)
T ss_pred eeeEecCcceEEEecCeeccCCCc------cccceEEEecCCccHHHHHHHHhhcCcchhHHHHHH-HHHHHhcCCCCeE
Confidence 99998888 99999986544311 45678999999999987753221 122 1222 2346789
Q ss_pred EEEcCCCCC-ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeeccccc
Q 042957 250 FSSGDCLKA-WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELA 328 (371)
Q Consensus 250 yv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 328 (371)
|++||.... ..+-...||+....=..++...-.+-. .+++..+. .| ..+-.-..+|.++-|........
T Consensus 451 y~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS-~~pS~~f~-------qR--s~~dp~~~~i~~~~G~~~~~~~~ 520 (723)
T KOG2437|consen 451 YVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSS-MVPSTGFT-------QR--ATIDPELNEIHVLSGLSKDKEKR 520 (723)
T ss_pred EeccCcccceEEeehhcceeccccchhhhccCcCccc-cCCCcchh-------hh--cccCCCCcchhhhcccchhccCc
Confidence 999987543 233455666655444443211100000 00000000 01 11111234677666655443311
Q ss_pred --ceeeEEEEeecccccccccccCcccc
Q 042957 329 --RTMSMVHIFDTAAKSDAWRSFEPIVE 354 (371)
Q Consensus 329 --~~~~~v~~~d~~~~~~~W~~~~~~p~ 354 (371)
....+.++|+..++ .|..|-.+.+
T Consensus 521 e~~~rns~wi~~i~~~--~w~cI~~I~~ 546 (723)
T KOG2437|consen 521 EENVRNSFWIYDIVRN--SWSCIYKIDQ 546 (723)
T ss_pred cccccCcEEEEEeccc--chhhHhhhHH
Confidence 24567888888887 8988876654
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.29 E-value=7.4e-12 Score=82.10 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=44.8
Q ss_pred cccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCC
Q 042957 64 VLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPR 130 (371)
Q Consensus 64 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r 130 (371)
+|..|++++++++|||+||.... ....+++|+||+.+++|+++++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----------------~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----------------GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----------------CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 48899999999999999999721 466899999999999999999999887
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.26 E-value=2.1e-11 Score=79.91 Aligned_cols=50 Identities=44% Similarity=0.751 Sum_probs=45.8
Q ss_pred CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCc
Q 042957 129 PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLR 180 (371)
Q Consensus 129 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~ 180 (371)
||..|++++++++||++||.... ....+++++||+++++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68999999999999999999852 567899999999999999999999887
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-11 Score=114.07 Aligned_cols=192 Identities=16% Similarity=0.196 Sum_probs=133.6
Q ss_pred CCeeeecCCC----------CCCCCCeeEEEECC--EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCC---CCCCCce
Q 042957 117 SNEWTRCAPL----------SVPRYDFACTVCDN--KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLP---NMSTLRY 181 (371)
Q Consensus 117 ~~~W~~~~~~----------~~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~ 181 (371)
+-.|.++++. |..|.+|.++...+ .||+.||++ +.+.+.+.|.|+...+.|..+. ..|..|.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd---G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD---GTQDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc---cchhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 3468777532 45689999998865 999999998 4566889999999999999874 3678887
Q ss_pred eeEEEEE--CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc-----CCCCCCeEEEECCE--EEEE
Q 042957 182 KCVGVTW--QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ-----LDIPPNQIVEVDNR--LFSS 252 (371)
Q Consensus 182 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-----~~~~~~~~~~~~~~--iyv~ 252 (371)
.|-++.. ..+||++|-+-+........ ...+++.||..++.|..+.--.. ...+-|+|++.+++ |||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s---~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKS---LRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccc---cccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 7777755 45899999764432211100 34689999999999998853322 12234678888888 9999
Q ss_pred cCCC----CCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeee--CCeEEEEcceeec
Q 042957 253 GDCL----KAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPI--GTHLYFLAGYRMA 324 (371)
Q Consensus 253 GG~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 324 (371)
||+. ......++.||.....|..+.......-++. |+ -+.|.+|++-.. +..+|++||....
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vv--------E~--~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVV--------ED--IQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred cCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcch--------hH--HHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 9972 2234679999999999998732110000000 00 145888887665 5589999987654
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.05 E-value=2.6e-10 Score=73.63 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=41.6
Q ss_pred cccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCC
Q 042957 64 VLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLS 127 (371)
Q Consensus 64 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 127 (371)
+|+.|++++++++|||+||... ....++++++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-----------------~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-----------------NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-----------------TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-----------------cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 4899999999999999999973 2467999999999999999999876
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.98 E-value=5.2e-10 Score=72.23 Aligned_cols=47 Identities=47% Similarity=0.791 Sum_probs=42.3
Q ss_pred CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCC
Q 042957 129 PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMS 177 (371)
Q Consensus 129 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 177 (371)
||..|++++++++||++||... ....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG--NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES--TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc--cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999985 4567899999999999999999876
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.94 E-value=2.6e-09 Score=69.50 Aligned_cols=49 Identities=31% Similarity=0.514 Sum_probs=42.7
Q ss_pred CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEE
Q 042957 74 GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVC 138 (371)
Q Consensus 74 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 138 (371)
+++||||||.+. .....++++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~----------------~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD----------------DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC----------------CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 578999999963 1346789999999999999999999999999999864
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.92 E-value=4.6e-09 Score=68.31 Aligned_cols=49 Identities=37% Similarity=0.607 Sum_probs=42.6
Q ss_pred CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCC
Q 042957 129 PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMS 177 (371)
Q Consensus 129 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 177 (371)
||..|++++.+++||++||..........+++++||+++++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 6899999999999999999933235667899999999999999998775
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.90 E-value=2.9e-09 Score=69.36 Aligned_cols=47 Identities=28% Similarity=0.505 Sum_probs=31.0
Q ss_pred cccceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCC
Q 042957 64 VLKGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLS 127 (371)
Q Consensus 64 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 127 (371)
+|.+|+++.+ +++||||||.+. ....++++|+||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-----------------~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-----------------SGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE------------------TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC-----------------CCcccCCEEEEECCCCEEEECCCCC
Confidence 5899999999 589999999972 2267999999999999999998776
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.85 E-value=9.4e-09 Score=66.85 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=41.1
Q ss_pred cccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCC
Q 042957 64 VLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLS 127 (371)
Q Consensus 64 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 127 (371)
+|.+|++++++++|||+||.... ......+++++||+.+++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~---------------~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTD---------------NGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccC---------------CCCcccceeEEEECCCCEEeecCCCC
Confidence 48899999999999999999111 14467899999999999999998764
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.81 E-value=1.4e-08 Score=66.03 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 187 (371)
+++|||+||... .....++++++||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 579999999984 245678999999999999999999999999999875
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.78 E-value=9.8e-09 Score=66.81 Aligned_cols=47 Identities=19% Similarity=0.451 Sum_probs=31.7
Q ss_pred eeeeeeEeee-CCeEEEEcceeecccccceeeEEEEeecccccccccccCccc
Q 042957 302 QRLYLTMAPI-GTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 302 ~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~~p 353 (371)
+|.+|+++.+ +++|||+||....+ ..++++++||++++ +|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~--~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETN--TWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTT--EEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCC--EEEECCCCC
Confidence 4899999999 58999999998863 57899999999998 999999888
No 41
>smart00612 Kelch Kelch domain.
Probab=98.72 E-value=2.5e-08 Score=64.09 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=40.7
Q ss_pred EEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECC
Q 042957 76 SVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN 140 (371)
Q Consensus 76 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 140 (371)
+|||+||.. .....+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~------------------~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFD------------------GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCC------------------CCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 489999985 22457899999999999999999999999999988764
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.68 E-value=8.4e-07 Score=77.52 Aligned_cols=168 Identities=13% Similarity=0.125 Sum_probs=109.5
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCC----Cceeecc-cc
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQA----GKWDLVA-RM 232 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t----~~W~~~~-~~ 232 (371)
.-...||+.+++++.+.-.....|...+..-++++.++||..... +.+..|++.+ ..|.... .|
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~-----------~~ir~~~p~~~~~~~~w~e~~~~m 114 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN-----------KAIRIFTPCTSDGTCDWTESPNDM 114 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc-----------cceEEEecCCCCCCCCceECcccc
Confidence 346789999999998875555556555566799999999987632 5677788765 6788775 57
Q ss_pred ccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCC-C-----ceEeecCcccccCCCCcccCCCCCCCCCCceeeee
Q 042957 233 WQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGEL-N-----MWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYL 306 (371)
Q Consensus 233 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~-~-----~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~ 306 (371)
..+|.+...+..-+++++|+||.... .+.|-+.. . .|..+ ..... ..+...+-+
T Consensus 115 ~~~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l-----~~~~~-----------~~~~nlYP~ 174 (243)
T PF07250_consen 115 QSGRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFL-----SQTSD-----------TLPNNLYPF 174 (243)
T ss_pred cCCCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecc-----hhhhc-----------cCccccCce
Confidence 88888766666679999999998643 33443432 1 11111 11100 001223445
Q ss_pred eEeeeCCeEEEEcceeecccccceeeEEEEeecccccccc-cccCccccccccccccceeeEEec
Q 042957 307 TMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAW-RSFEPIVEEGEKELCSHCCVVQLS 370 (371)
Q Consensus 307 ~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W-~~~~~~p~~~~~~~~~~~~~~~~~ 370 (371)
..+.-+++||+++.+.. .+||+.++ ++ +.+|.||.. .+-.-..++.+.||
T Consensus 175 ~~llPdG~lFi~an~~s-----------~i~d~~~n--~v~~~lP~lPg~-~R~YP~sgssvmLP 225 (243)
T PF07250_consen 175 VHLLPDGNLFIFANRGS-----------IIYDYKTN--TVVRTLPDLPGG-PRNYPASGSSVMLP 225 (243)
T ss_pred EEEcCCCCEEEEEcCCc-----------EEEeCCCC--eEEeeCCCCCCC-ceecCCCcceEEec
Confidence 55566899999987643 47899887 66 889999953 33334455566665
No 43
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=5.3e-08 Score=62.53 Aligned_cols=47 Identities=45% Similarity=0.715 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECC
Q 042957 141 KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQG 190 (371)
Q Consensus 141 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~ 190 (371)
+||++||... ....+++++||+.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG---GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC---CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4899999863 3457899999999999999999999999998887764
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.63 E-value=6e-06 Score=72.18 Aligned_cols=152 Identities=17% Similarity=0.260 Sum_probs=103.2
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCC----CceEeCC-CCCCCce
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPEL----DQWTPLP-NMSTLRY 181 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~~~ 181 (371)
...--.||+.+++++.+......-+...+..-++++++.||... ....+..|++.+ ..|.+.+ .|..+|.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~-----G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND-----GNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc-----cccceEEEecCCCCCCCCceECcccccCCCc
Confidence 45567899999999988765555555556667999999999853 245677788765 5798876 5899998
Q ss_pred eeEEEEE-CCEEEEEecccCCCCCCCCccccccCeeEEEECCC-----Cceeeccccc---cCCCCCCeEEEECCEEEEE
Q 042957 182 KCVGVTW-QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQA-----GKWDLVARMW---QLDIPPNQIVEVDNRLFSS 252 (371)
Q Consensus 182 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t-----~~W~~~~~~~---~~~~~~~~~~~~~~~iyv~ 252 (371)
.+++..+ |++++|+||.... +.+.+..+. ..|..+.... ....+......-+++|+++
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-------------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-------------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-------------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE
Confidence 8877754 8899999998732 223333321 1222222111 1123334556669999999
Q ss_pred cCCCCCccCeEEEEeCCCCce-EeecCcccccCCCC
Q 042957 253 GDCLKAWKGHIESYDGELNMW-DEVNGSCLQTLSSP 287 (371)
Q Consensus 253 GG~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~l~~~ 287 (371)
+.. +..+||+.++++ +.+ ++||..
T Consensus 187 an~------~s~i~d~~~n~v~~~l-----P~lPg~ 211 (243)
T PF07250_consen 187 ANR------GSIIYDYKTNTVVRTL-----PDLPGG 211 (243)
T ss_pred EcC------CcEEEeCCCCeEEeeC-----CCCCCC
Confidence 763 478889999987 677 777653
No 45
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.60 E-value=1.6e-05 Score=70.03 Aligned_cols=200 Identities=10% Similarity=0.084 Sum_probs=115.8
Q ss_pred ceEEEEECCCCeeeecCCCCCCCC---C-eeEEEEC-----CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCC
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRY---D-FACTVCD-----NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMST 178 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~---~-~~~~~~~-----~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 178 (371)
..+.++||.|++|..+|+.+.++. . .....++ -||..+..... ......+++|+..+++|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~---~~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG---NRNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC---CCCCccEEEEEeCCCCccccccCCC
Confidence 458899999999999986553211 1 1112222 25666644321 1134578999999999999874332
Q ss_pred C-ceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceee-ccccccCCC---CCCeEEEECCEEEEEc
Q 042957 179 L-RYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDL-VARMWQLDI---PPNQIVEVDNRLFSSG 253 (371)
Q Consensus 179 ~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~~~---~~~~~~~~~~~iyv~G 253 (371)
. ......+.++|.||-+.-..... ....|..||+.+.+|.. ++ +|.... ....++.++++|.++.
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~---------~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTN---------PDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCC---------CcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEE
Confidence 1 11122678899999887443211 11269999999999995 54 333221 1235777889998886
Q ss_pred CCCCCccCeEEEEe-CCCCceEeecCcccccCCCCcccCCCCCCCCCCcee--eeeeEeeeCCeEEEEcceeecccccce
Q 042957 254 DCLKAWKGHIESYD-GELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQR--LYLTMAPIGTHLYFLAGYRMAGELART 330 (371)
Q Consensus 254 G~~~~~~~~~~~yd-~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~~ 330 (371)
.......-+||+.+ .....|+++ -.++.+ .+ +..+ .....+..+++|++.-.. . .
T Consensus 161 ~~~~~~~~~IWvl~d~~~~~W~k~-----~~i~~~---------~~-~~~~~~~~~~~~~~~g~I~~~~~~-~------~ 218 (230)
T TIGR01640 161 QKKDTNNFDLWVLNDAGKQEWSKL-----FTVPIP---------PL-PDLVDDNFLSGFTDKGEIVLCCED-E------N 218 (230)
T ss_pred ecCCCCcEEEEEECCCCCCceeEE-----EEEcCc---------ch-hhhhhheeEeEEeeCCEEEEEeCC-C------C
Confidence 54322224677775 446679986 333321 00 1111 122334456788776543 1 1
Q ss_pred eeEEEEeecccc
Q 042957 331 MSMVHIFDTAAK 342 (371)
Q Consensus 331 ~~~v~~~d~~~~ 342 (371)
..-+..||++++
T Consensus 219 ~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 PFYIFYYNVGEN 230 (230)
T ss_pred ceEEEEEeccCC
Confidence 124778888763
No 46
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.50 E-value=3.7e-05 Score=67.66 Aligned_cols=200 Identities=11% Similarity=0.030 Sum_probs=113.2
Q ss_pred cceeEEeCCCCceeccCCCCcccccccc--cceEEEEE-CC-EEEEEcCcccccCCCCCCCCCCccccccccccceEEEE
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVL--KGFSIVSL-GD-SVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRY 113 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r--~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 113 (371)
..+..+||.|.+|..+|..+.+.....+ .+++.... +. +|..+.... .......+++|
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~------------------~~~~~~~~~Vy 75 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS------------------GNRNQSEHQVY 75 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec------------------CCCCCccEEEE
Confidence 4688999999999999865422111111 11111111 11 344443221 00123578999
Q ss_pred ECCCCeeeecCCCCCC-CCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe-CCCCCCCc----eeeEEEE
Q 042957 114 NVKSNEWTRCAPLSVP-RYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP-LPNMSTLR----YKCVGVT 187 (371)
Q Consensus 114 d~~~~~W~~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~----~~~~~~~ 187 (371)
+..+++|+.+...+.. ......+.++|.||.+.-.... .....+..||..+++|+. ++ +|... ....++.
T Consensus 76 s~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~---~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~ 151 (230)
T TIGR01640 76 TLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT---NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLIN 151 (230)
T ss_pred EeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCC---CCcEEEEEEEcccceEeeeee-cCccccccccceEEEE
Confidence 9999999998743322 1122266789999998754311 111269999999999995 53 44332 2345667
Q ss_pred ECCEEEEEecccCCCCCCCCccccccCeeEEEE-CCCCceeecccccc---CCCCC---CeEEEECCEEEEEcCCCCCcc
Q 042957 188 WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD-TQAGKWDLVARMWQ---LDIPP---NQIVEVDNRLFSSGDCLKAWK 260 (371)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd-~~t~~W~~~~~~~~---~~~~~---~~~~~~~~~iyv~GG~~~~~~ 260 (371)
++++|.++....... .-.|++.+ -....|+++-.++. ..... ...+..+++|++..... ..
T Consensus 152 ~~G~L~~v~~~~~~~----------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~--~~ 219 (230)
T TIGR01640 152 YKGKLAVLKQKKDTN----------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE--NP 219 (230)
T ss_pred ECCEEEEEEecCCCC----------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC--Cc
Confidence 889999887543211 02445443 33557987754432 11111 12345678888876531 11
Q ss_pred CeEEEEeCCCC
Q 042957 261 GHIESYDGELN 271 (371)
Q Consensus 261 ~~~~~yd~~~~ 271 (371)
..+..||++++
T Consensus 220 ~~~~~y~~~~~ 230 (230)
T TIGR01640 220 FYIFYYNVGEN 230 (230)
T ss_pred eEEEEEeccCC
Confidence 23999999875
No 47
>PLN02772 guanylate kinase
Probab=98.44 E-value=1.7e-06 Score=80.34 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=68.4
Q ss_pred ccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeec---CCCCCCCCCeeEEEE-
Q 042957 63 HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRC---APLSVPRYDFACTVC- 138 (371)
Q Consensus 63 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~- 138 (371)
.++.+++++.+++++||+||.+. ..+.++.+++||..+++|... ...|.+|.+|+++++
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d-----------------~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~ 85 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHE-----------------GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLN 85 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCC-----------------CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEEC
Confidence 35788999999999999999862 224678999999999999775 467899999999988
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCC
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELD 168 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~ 168 (371)
+++|+|+++-... -.++|.+...|.
T Consensus 86 ~~rilv~~~~~~~-----~~~~w~l~~~t~ 110 (398)
T PLN02772 86 KDRILVIKKGSAP-----DDSIWFLEVDTP 110 (398)
T ss_pred CceEEEEeCCCCC-----ccceEEEEcCCH
Confidence 6899999865432 267888887764
No 48
>PF13854 Kelch_5: Kelch motif
Probab=98.37 E-value=6.8e-07 Score=55.85 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=34.4
Q ss_pred CceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeeccc
Q 042957 300 PIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAA 341 (371)
Q Consensus 300 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~ 341 (371)
|.+|..|+++.++++|||+||... .....++++|+||+.+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCC
Confidence 678999999999999999999985 1236789999999875
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.35 E-value=1.3e-06 Score=54.54 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=35.4
Q ss_pred CCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCC
Q 042957 126 LSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPEL 167 (371)
Q Consensus 126 ~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t 167 (371)
+|.+|..|+++.++++||++||... ......+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 4789999999999999999999984 2456689999999876
No 50
>PLN02772 guanylate kinase
Probab=98.30 E-value=6.6e-06 Score=76.43 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=67.9
Q ss_pred CCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeC---CCCCCCceeeEEEEE-CCEEEEEecccCCC
Q 042957 127 SVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPL---PNMSTLRYKCVGVTW-QGKIHVVSGFAQRA 202 (371)
Q Consensus 127 ~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~~~~~~~~~-~~~lyv~GG~~~~~ 202 (371)
..++..++++.+++++||+||... .....+.+++||..+.+|... .+.|.+|.+|+++++ +++|+|+++-....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d--~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHE--GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCC--CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 458899999999999999999764 333578999999999999875 468899999999887 68899999755543
Q ss_pred CCCCCccccccCeeEEEECCCC
Q 042957 203 DSDGSVHFTERSSAEVYDTQAG 224 (371)
Q Consensus 203 ~~~~~~~~~~~~~v~~yd~~t~ 224 (371)
+++|.+...|.
T Consensus 100 -----------~~~w~l~~~t~ 110 (398)
T PLN02772 100 -----------DSIWFLEVDTP 110 (398)
T ss_pred -----------cceEEEEcCCH
Confidence 46666666554
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.22 E-value=0.00022 Score=62.28 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=71.8
Q ss_pred cccceEEEEECCCCee-----------eecCCCCCCCCCeeEEEE----CCEEEEEcCCCCCC-----------CCCCCc
Q 042957 105 KVLAWVLRYNVKSNEW-----------TRCAPLSVPRYDFACTVC----DNKIYVAGGKSNLF-----------SAKGTA 158 (371)
Q Consensus 105 ~~~~~v~~yd~~~~~W-----------~~~~~~~~~r~~~~~~~~----~~~lyv~GG~~~~~-----------~~~~~~ 158 (371)
+.++.+|+....+..- ..+.+.|.+|++|++-++ +..+.+|||+.--. -..+..
T Consensus 52 ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P 131 (337)
T PF03089_consen 52 ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPP 131 (337)
T ss_pred ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCC
Confidence 4577788877655431 124688999999988876 24578899975211 112445
Q ss_pred eEEEEeCCCCceE--eCCCCCCCceeeEEEEECCEEEEEecccCCCCC
Q 042957 159 SAEVYHPELDQWT--PLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADS 204 (371)
Q Consensus 159 ~~~~yd~~t~~W~--~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~ 204 (371)
.++..|++-+.+. .++.+..+...|.+..-++.+|++||..-..+.
T Consensus 132 ~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~ 179 (337)
T PF03089_consen 132 QVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDS 179 (337)
T ss_pred eEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCC
Confidence 6888888877654 467788888888888899999999998776544
No 52
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.15 E-value=0.0041 Score=54.56 Aligned_cols=213 Identities=19% Similarity=0.258 Sum_probs=124.8
Q ss_pred cceeEEeCCCCc--eeccCCCCcccccccccceE--EEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEE
Q 042957 38 NWLASYNPSNNT--WSHVSHIPDLLENHVLKGFS--IVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRY 113 (371)
Q Consensus 38 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 113 (371)
..+.++|+.+++ |+.-..-. ..... .+..++.+|+..+ ...++.+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~-------~~~~~~~~~~~~~~v~~~~~------------------------~~~l~~~ 51 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPG-------IGGPVATAVPDGGRVYVASG------------------------DGNLYAL 51 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSS-------CSSEEETEEEETTEEEEEET------------------------TSEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCC-------CCCccceEEEeCCEEEEEcC------------------------CCEEEEE
Confidence 357889987766 77732110 11112 3336888998843 3579999
Q ss_pred ECCCCe--eeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceE-eCCCCCC--CceeeEEE
Q 042957 114 NVKSNE--WTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWT-PLPNMST--LRYKCVGV 186 (371)
Q Consensus 114 d~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~-~~~~~p~--~~~~~~~~ 186 (371)
|..+++ |+.-. +.+. ....+..++.||+.... ..++.+|..+. .|+ .....+. ........
T Consensus 52 d~~tG~~~W~~~~--~~~~-~~~~~~~~~~v~v~~~~---------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 119 (238)
T PF13360_consen 52 DAKTGKVLWRFDL--PGPI-SGAPVVDGGRVYVGTSD---------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA 119 (238)
T ss_dssp ETTTSEEEEEEEC--SSCG-GSGEEEETTEEEEEETT---------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE
T ss_pred ECCCCCEEEEeec--cccc-cceeeecccccccccce---------eeeEecccCCcceeeeeccccccccccccccCce
Confidence 998875 65543 2221 12247789999888522 27899997776 588 3433222 22334444
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeeccccccCCCC-------CCeEEEECCEEEEEcCCCC
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVARMWQLDIP-------PNQIVEVDNRLFSSGDCLK 257 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~-------~~~~~~~~~~iyv~GG~~~ 257 (371)
+.++.+|+... ...+.++|+++++ |+.-...+..... ....+..++.+|+..+...
T Consensus 120 ~~~~~~~~~~~---------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 184 (238)
T PF13360_consen 120 VDGDRLYVGTS---------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR 184 (238)
T ss_dssp EETTEEEEEET---------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred EecCEEEEEec---------------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence 55777777663 2578999999875 6654433221110 1123444678888865443
Q ss_pred CccCeEEEEeCCCCc--eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEE
Q 042957 258 AWKGHIESYDGELNM--WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVH 335 (371)
Q Consensus 258 ~~~~~~~~yd~~~~~--W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~ 335 (371)
+..+|.++++ |+.. +. -........++.||+.. . ...++
T Consensus 185 -----~~~~d~~tg~~~w~~~-------~~-----------------~~~~~~~~~~~~l~~~~-~---------~~~l~ 225 (238)
T PF13360_consen 185 -----VVAVDLATGEKLWSKP-------IS-----------------GIYSLPSVDGGTLYVTS-S---------DGRLY 225 (238)
T ss_dssp -----EEEEETTTTEEEEEEC-------SS------------------ECECEECCCTEEEEEE-T---------TTEEE
T ss_pred -----EEEEECCCCCEEEEec-------CC-----------------CccCCceeeCCEEEEEe-C---------CCEEE
Confidence 5666999987 8332 11 11122445567777765 2 14788
Q ss_pred Eeeccccccccc
Q 042957 336 IFDTAAKSDAWR 347 (371)
Q Consensus 336 ~~d~~~~~~~W~ 347 (371)
++|+++....|+
T Consensus 226 ~~d~~tG~~~W~ 237 (238)
T PF13360_consen 226 ALDLKTGKVVWQ 237 (238)
T ss_dssp EEETTTTEEEEE
T ss_pred EEECCCCCEEeE
Confidence 999999877786
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.10 E-value=0.0032 Score=60.09 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=123.0
Q ss_pred cceeEEeCCCCc--eeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNT--WSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
..++++|..+.+ |+.-..-+ ...+-++.++.||+..+ ...++.+|+
T Consensus 130 g~l~ald~~tG~~~W~~~~~~~--------~~ssP~v~~~~v~v~~~------------------------~g~l~ald~ 177 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAGE--------ALSRPVVSDGLVLVHTS------------------------NGMLQALNE 177 (394)
T ss_pred CEEEEEECCCCCCcccccCCCc--------eecCCEEECCEEEEECC------------------------CCEEEEEEc
Confidence 358999998865 87643211 11133455788887543 246899999
Q ss_pred CCCe--eeecCCCCC--CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCCCCCC-----c---e
Q 042957 116 KSNE--WTRCAPLSV--PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPNMSTL-----R---Y 181 (371)
Q Consensus 116 ~~~~--W~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~-----~---~ 181 (371)
.+++ |+.-...+. .+...+-++.++.+|+..+. ..+..+|..+. .|+.-...|.. + .
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~---------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN---------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC---------CEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 8775 876433221 12223344567777775432 35778888775 47643222211 0 1
Q ss_pred eeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeeccccccCCCCCCeEEEECCEEEEEcCCCCCc
Q 042957 182 KCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAW 259 (371)
Q Consensus 182 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~ 259 (371)
...-++.++.||+.+. ...+.++|+++++ |+.-. ... ...+..+++||+....
T Consensus 249 ~~sP~v~~~~vy~~~~---------------~g~l~ald~~tG~~~W~~~~--~~~----~~~~~~~~~vy~~~~~---- 303 (394)
T PRK11138 249 DTTPVVVGGVVYALAY---------------NGNLVALDLRSGQIVWKREY--GSV----NDFAVDGGRIYLVDQN---- 303 (394)
T ss_pred CCCcEEECCEEEEEEc---------------CCeEEEEECCCCCEEEeecC--CCc----cCcEEECCEEEEEcCC----
Confidence 1233467899998662 1468999998774 76531 111 1356679999997532
Q ss_pred cCeEEEEeCCCCc--eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEe
Q 042957 260 KGHIESYDGELNM--WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIF 337 (371)
Q Consensus 260 ~~~~~~yd~~~~~--W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~ 337 (371)
..++.+|+++.+ |+.- .+. .+...+.+..+++||+.... ..++.+
T Consensus 304 -g~l~ald~~tG~~~W~~~------~~~----------------~~~~~sp~v~~g~l~v~~~~----------G~l~~l 350 (394)
T PRK11138 304 -DRVYALDTRGGVELWSQS------DLL----------------HRLLTAPVLYNGYLVVGDSE----------GYLHWI 350 (394)
T ss_pred -CeEEEEECCCCcEEEccc------ccC----------------CCcccCCEEECCEEEEEeCC----------CEEEEE
Confidence 259999998763 7542 111 02223345568888874321 256777
Q ss_pred ecccccccccc
Q 042957 338 DTAAKSDAWRS 348 (371)
Q Consensus 338 d~~~~~~~W~~ 348 (371)
|+++.+..|+.
T Consensus 351 d~~tG~~~~~~ 361 (394)
T PRK11138 351 NREDGRFVAQQ 361 (394)
T ss_pred ECCCCCEEEEE
Confidence 87776556664
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.01 E-value=0.0059 Score=58.31 Aligned_cols=220 Identities=17% Similarity=0.167 Sum_probs=125.0
Q ss_pred cceeEEeCCCCc--eeccCCCCccccc---ccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEE
Q 042957 38 NWLASYNPSNNT--WSHVSHIPDLLEN---HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLR 112 (371)
Q Consensus 38 ~~~~~yd~~~~~--W~~~~~~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 112 (371)
..+++||..+++ |+.-..-...... ..+...+.++.++.||+.+. ...++.
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------------------------~g~l~a 134 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------------------------KGQVYA 134 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------------------------CCEEEE
Confidence 358999998766 8753221100000 01222345667888987532 246899
Q ss_pred EECCCCe--eeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc--eEeCCCCCC--CceeeEEE
Q 042957 113 YNVKSNE--WTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ--WTPLPNMST--LRYKCVGV 186 (371)
Q Consensus 113 yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~~~~~~~~ 186 (371)
+|..+.+ |+.-..- + ...+-++.++.||+..+. ..++.+|.++.+ |+.-...|. .+...+-+
T Consensus 135 ld~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~~---------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 135 LNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTSN---------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred EECCCCCCcccccCCC--c-eecCCEEECCEEEEECCC---------CEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence 9988764 8653221 1 122334568888875432 368999998764 876543321 11122334
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCC--ceeeccccccCC-------CCCCeEEEECCEEEEEcCCCC
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG--KWDLVARMWQLD-------IPPNQIVEVDNRLFSSGDCLK 257 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~-------~~~~~~~~~~~~iyv~GG~~~ 257 (371)
+.++.+|+..+ ...+..+|++++ .|+.-...+... ......++.++.+|+.+..
T Consensus 203 v~~~~v~~~~~---------------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~-- 265 (394)
T PRK11138 203 TAFGGAIVGGD---------------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN-- 265 (394)
T ss_pred EECCEEEEEcC---------------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC--
Confidence 56777776442 135778888876 476432222110 0112345678999986532
Q ss_pred CccCeEEEEeCCCCc--eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEE
Q 042957 258 AWKGHIESYDGELNM--WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVH 335 (371)
Q Consensus 258 ~~~~~~~~yd~~~~~--W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~ 335 (371)
..++++|+.+.+ |+.- +... ...+..+++||+.... ..++
T Consensus 266 ---g~l~ald~~tG~~~W~~~-------~~~~------------------~~~~~~~~~vy~~~~~----------g~l~ 307 (394)
T PRK11138 266 ---GNLVALDLRSGQIVWKRE-------YGSV------------------NDFAVDGGRIYLVDQN----------DRVY 307 (394)
T ss_pred ---CeEEEEECCCCCEEEeec-------CCCc------------------cCcEEECCEEEEEcCC----------CeEE
Confidence 259999998764 7653 1100 1245668899886522 3577
Q ss_pred Eeecccccccccc
Q 042957 336 IFDTAAKSDAWRS 348 (371)
Q Consensus 336 ~~d~~~~~~~W~~ 348 (371)
.+|+++.+..|+.
T Consensus 308 ald~~tG~~~W~~ 320 (394)
T PRK11138 308 ALDTRGGVELWSQ 320 (394)
T ss_pred EEECCCCcEEEcc
Confidence 8888776567864
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.86 E-value=0.02 Score=54.25 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=96.6
Q ss_pred ceEEEEECCCCe--eeecCCCCC--CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCCCCCCc-
Q 042957 108 AWVLRYNVKSNE--WTRCAPLSV--PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPNMSTLR- 180 (371)
Q Consensus 108 ~~v~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~- 180 (371)
..++.+|+.+++ |+.-...+. .+...+.+..++.+|+ |..+ ..+..+|+.+. .|+.-...+.+.
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~--------g~v~ald~~tG~~~W~~~~~~~~g~~ 225 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG--------GKLVALDLQTGQPLWEQRVALPKGRT 225 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC--------CEEEEEEccCCCEeeeeccccCCCCC
Confidence 458899987664 765332221 1222334455666554 3322 35888998775 576432222111
Q ss_pred -------eeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeeccccccCCCCCCeEEEECCEEEE
Q 042957 181 -------YKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVARMWQLDIPPNQIVEVDNRLFS 251 (371)
Q Consensus 181 -------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~iyv 251 (371)
.....++.++.||+... ...+.+||+++++ |+.-. . .....++.+++||+
T Consensus 226 ~~~~~~~~~~~p~~~~~~vy~~~~---------------~g~l~a~d~~tG~~~W~~~~--~----~~~~p~~~~~~vyv 284 (377)
T TIGR03300 226 ELERLVDVDGDPVVDGGQVYAVSY---------------QGRVAALDLRSGRVLWKRDA--S----SYQGPAVDDNRLYV 284 (377)
T ss_pred chhhhhccCCccEEECCEEEEEEc---------------CCEEEEEECCCCcEEEeecc--C----CccCceEeCCEEEE
Confidence 11233456888888652 2468999998764 65431 1 12235567899998
Q ss_pred EcCCCCCccCeEEEEeCCCC--ceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccc
Q 042957 252 SGDCLKAWKGHIESYDGELN--MWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELAR 329 (371)
Q Consensus 252 ~GG~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 329 (371)
.... ..++++|..+. .|+.- .+.. +...+.+..+++||+.. .
T Consensus 285 ~~~~-----G~l~~~d~~tG~~~W~~~------~~~~----------------~~~ssp~i~g~~l~~~~-~-------- 328 (377)
T TIGR03300 285 TDAD-----GVVVALDRRSGSELWKND------ELKY----------------RQLTAPAVVGGYLVVGD-F-------- 328 (377)
T ss_pred ECCC-----CeEEEEECCCCcEEEccc------cccC----------------CccccCEEECCEEEEEe-C--------
Confidence 7532 25999999775 47652 1111 12223344677777642 1
Q ss_pred eeeEEEEeecccccccccc
Q 042957 330 TMSMVHIFDTAAKSDAWRS 348 (371)
Q Consensus 330 ~~~~v~~~d~~~~~~~W~~ 348 (371)
...++++|+++.+..|+.
T Consensus 329 -~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 329 -EGYLHWLSREDGSFVARL 346 (377)
T ss_pred -CCEEEEEECCCCCEEEEE
Confidence 125778888766556654
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.79 E-value=0.027 Score=53.36 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=117.7
Q ss_pred cceeEEeCCCCc--eeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNT--WSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
..+++||+.+++ |+.--.-. ...+.++.++.+|+.. . ...++.+|.
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~--------~~~~p~v~~~~v~v~~-~-----------------------~g~l~ald~ 122 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDER--------LSGGVGADGGLVFVGT-E-----------------------KGEVIALDA 122 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCC--------cccceEEcCCEEEEEc-C-----------------------CCEEEEEEC
Confidence 359999998776 86532221 1113445567787653 2 246899998
Q ss_pred CCCe--eeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCCCCC--CceeeEEEEEC
Q 042957 116 KSNE--WTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPNMST--LRYKCVGVTWQ 189 (371)
Q Consensus 116 ~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~--~~~~~~~~~~~ 189 (371)
.+++ |+.-.. .. .....++.++++|+..+. ..++.+|.++. .|+.-...+. .+.....+..+
T Consensus 123 ~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~~---------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~ 190 (377)
T TIGR03300 123 EDGKELWRAKLS--SE-VLSPPLVANGLVVVRTND---------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD 190 (377)
T ss_pred CCCcEeeeeccC--ce-eecCCEEECCEEEEECCC---------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC
Confidence 7764 865321 11 122334467888875432 35889998875 4765432221 11222334556
Q ss_pred CEEEEEecccCCCCCCCCccccccCeeEEEECCCC--ceeeccccccCC-------CCCCeEEEECCEEEEEcCCCCCcc
Q 042957 190 GKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG--KWDLVARMWQLD-------IPPNQIVEVDNRLFSSGDCLKAWK 260 (371)
Q Consensus 190 ~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~-------~~~~~~~~~~~~iyv~GG~~~~~~ 260 (371)
+.+| ++... ..+..+|++++ .|+.-...+... ......+..++.+|+....
T Consensus 191 ~~v~-~~~~~--------------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~----- 250 (377)
T TIGR03300 191 GGVL-VGFAG--------------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ----- 250 (377)
T ss_pred CEEE-EECCC--------------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-----
Confidence 6655 44211 36788998876 475432211110 0112344568888886432
Q ss_pred CeEEEEeCCCCc--eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEee
Q 042957 261 GHIESYDGELNM--WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFD 338 (371)
Q Consensus 261 ~~~~~yd~~~~~--W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d 338 (371)
..+++||+++.+ |+.- .. .....+..+++||+... ...++++|
T Consensus 251 g~l~a~d~~tG~~~W~~~-------~~------------------~~~~p~~~~~~vyv~~~----------~G~l~~~d 295 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRD-------AS------------------SYQGPAVDDNRLYVTDA----------DGVVVALD 295 (377)
T ss_pred CEEEEEECCCCcEEEeec-------cC------------------CccCceEeCCEEEEECC----------CCeEEEEE
Confidence 259999998754 6542 10 11233456888888642 13677888
Q ss_pred cccccccccc
Q 042957 339 TAAKSDAWRS 348 (371)
Q Consensus 339 ~~~~~~~W~~ 348 (371)
..+....|+.
T Consensus 296 ~~tG~~~W~~ 305 (377)
T TIGR03300 296 RRSGSELWKN 305 (377)
T ss_pred CCCCcEEEcc
Confidence 8766567875
No 57
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.76 E-value=0.016 Score=50.99 Aligned_cols=169 Identities=10% Similarity=0.054 Sum_probs=93.5
Q ss_pred CCCCCCCccccceeEEeCCCCceecc-------CCCCcccccccccceEEEEEC--C--EEEEEcCcccccCCCCCCCCC
Q 042957 28 REPGPRSNISNWLASYNPSNNTWSHV-------SHIPDLLENHVLKGFSIVSLG--D--SVYIIGGLLCHKERAHNSDES 96 (371)
Q Consensus 28 ~~~~~~~~~~~~~~~yd~~~~~W~~~-------~~~~~~~~~~~r~~~~~~~~~--~--~iyv~GG~~~~~~~~~~~~~~ 96 (371)
||.++++..++++|.....+....+. ..+-.. .+.+|++|++.++- + -+.+|||+..-.... .-
T Consensus 45 GGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGd-vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q----RT 119 (337)
T PF03089_consen 45 GGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGD-VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ----RT 119 (337)
T ss_pred CCcCCCcccccceEEEEeecCCCCceeEEEEecceecCC-CCcccccceEEEEEECCcEEEEEECCcccCCccc----cc
Confidence 56677888888887766544331111 112111 13689999987772 2 388899985322110 00
Q ss_pred CccccccccccceEEEEECCCCeee--ecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCC--CC-ceE
Q 042957 97 DDFVDAYDKVLAWVLRYNVKSNEWT--RCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPE--LD-QWT 171 (371)
Q Consensus 97 ~~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~--t~-~W~ 171 (371)
.+.=+.-..+...|+.+|++-+-.. .+|.+....+.|.+..-++.||++||..-. .......++..... -+ -+-
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~-sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE-SDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc-CCCCCCcEEEEEEeecCCCcee
Confidence 0000111223446888888777554 357777888888888899999999998542 22223344444322 11 111
Q ss_pred eCCCCCCCceeeEEEE---ECCEEEEEecccCCC
Q 042957 172 PLPNMSTLRYKCVGVT---WQGKIHVVSGFAQRA 202 (371)
Q Consensus 172 ~~~~~p~~~~~~~~~~---~~~~lyv~GG~~~~~ 202 (371)
...-++.+..-.++.+ -.++..|+||+..+.
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 1112343433222222 246788899987765
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.56 E-value=0.0031 Score=58.87 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=81.7
Q ss_pred ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 138 CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 138 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
.+.+|+.++.. ....+||..+..-...|.|+.+.....++.++++||++............ ....++
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~----~~~~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRP----DFPCFE 141 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCc----cceeEE
Confidence 58999998554 34889999999888888888877777777889999999976544221100 001344
Q ss_pred EE--E--------CCCCceeeccccccCCCC------CCeEEEE-CCEEEE-EcCCCCCccCeEEEEeCCCCceEee
Q 042957 218 VY--D--------TQAGKWDLVARMWQLDIP------PNQIVEV-DNRLFS-SGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 218 ~y--d--------~~t~~W~~~~~~~~~~~~------~~~~~~~-~~~iyv-~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
.+ + .....|+.++++|-.... ..+-+++ +..|+| +-+.. ...+.||.++.+|+.+
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----WGTYSFDTESHEWRKH 214 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----eEEEEEEcCCcceeec
Confidence 43 3 234468888765533322 2244555 678888 43322 2499999999999999
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.10 E-value=0.17 Score=44.25 Aligned_cols=135 Identities=14% Similarity=0.195 Sum_probs=79.6
Q ss_pred ceEEEEECCCCe--eeecCCCCCCCCCee--EEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc--eEeCCCCCCCce
Q 042957 108 AWVLRYNVKSNE--WTRCAPLSVPRYDFA--CTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ--WTPLPNMSTLRY 181 (371)
Q Consensus 108 ~~v~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~ 181 (371)
..+..+|+.+++ |+.- +........ .+..++++|+..+ ...++++|..+++ |+.-. +.+..
T Consensus 3 g~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~~~~--~~~~~ 69 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVLWRFDL--PGPIS 69 (238)
T ss_dssp SEEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEEEEEEC--SSCGG
T ss_pred CEEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEEEEeec--ccccc
Confidence 346677776654 6552 111233333 3447899998843 2579999998774 65543 32222
Q ss_pred eeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCC--cee-eccccccCC-CCCCeEEEECCEEEEEcCCCC
Q 042957 182 KCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG--KWD-LVARMWQLD-IPPNQIVEVDNRLFSSGDCLK 257 (371)
Q Consensus 182 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~-~~~~~~~~~-~~~~~~~~~~~~iyv~GG~~~ 257 (371)
.. .+..++.||+... .+.+.++|.+++ .|+ .....+... ......++.++.+|+...
T Consensus 70 ~~-~~~~~~~v~v~~~---------------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 130 (238)
T PF13360_consen 70 GA-PVVDGGRVYVGTS---------------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--- 130 (238)
T ss_dssp SG-EEEETTEEEEEET---------------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---
T ss_pred ce-eeecccccccccc---------------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---
Confidence 22 3788999998871 147899998876 487 343322221 122245555777777653
Q ss_pred CccCeEEEEeCCCCc--eEee
Q 042957 258 AWKGHIESYDGELNM--WDEV 276 (371)
Q Consensus 258 ~~~~~~~~yd~~~~~--W~~~ 276 (371)
...+.++|+++.+ |+.-
T Consensus 131 --~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 131 --SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp --CSEEEEEETTTTEEEEEEE
T ss_pred --cCcEEEEecCCCcEEEEee
Confidence 2359999988754 6664
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.08 E-value=0.038 Score=51.57 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred ECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCC
Q 042957 73 LGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLF 152 (371)
Q Consensus 73 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~ 152 (371)
.+++|+.+... ....+||..+..-...|.+..+.....++.++++||++.......
T Consensus 75 ~gskIv~~d~~------------------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~ 130 (342)
T PF07893_consen 75 HGSKIVAVDQS------------------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPE 130 (342)
T ss_pred cCCeEEEEcCC------------------------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccc
Confidence 58889888543 348999999998888888888777778888899999998764321
Q ss_pred CCCC--CceEEEE--e--------CCCCceEeCCCCCCCce-------eeEEEEE-CCEEEE-EecccCCCCCCCCcccc
Q 042957 153 SAKG--TASAEVY--H--------PELDQWTPLPNMSTLRY-------KCVGVTW-QGKIHV-VSGFAQRADSDGSVHFT 211 (371)
Q Consensus 153 ~~~~--~~~~~~y--d--------~~t~~W~~~~~~p~~~~-------~~~~~~~-~~~lyv-~GG~~~~~~~~~~~~~~ 211 (371)
.... ....|++ + ...-.|+.+++.|..+. -.+-+++ +..|+| +.+..
T Consensus 131 ~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------ 198 (342)
T PF07893_consen 131 PAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------ 198 (342)
T ss_pred cccCccceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------------
Confidence 1100 0144454 3 12236888887664332 2233455 667888 44322
Q ss_pred ccCeeEEEECCCCceeeccc
Q 042957 212 ERSSAEVYDTQAGKWDLVAR 231 (371)
Q Consensus 212 ~~~~v~~yd~~t~~W~~~~~ 231 (371)
...+.||+++.+|++...
T Consensus 199 --~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 199 --WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred --eEEEEEEcCCcceeeccc
Confidence 147999999999999954
No 61
>smart00284 OLF Olfactomedin-like domains.
Probab=96.97 E-value=0.15 Score=45.00 Aligned_cols=150 Identities=9% Similarity=-0.009 Sum_probs=89.5
Q ss_pred ceEEEEEC----CCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCc---
Q 042957 108 AWVLRYNV----KSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLR--- 180 (371)
Q Consensus 108 ~~v~~yd~----~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~--- 180 (371)
..++.|.- ....+.+.-.+|.+-.+.+.+++++.+|.--.. ...+-.||+.+.+-.....||.+.
T Consensus 48 ~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~--------s~~iiKydL~t~~v~~~~~Lp~a~y~~ 119 (255)
T smart00284 48 RSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN--------SHDICRFDLTTETYQKEPLLNGAGYNN 119 (255)
T ss_pred cEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC--------CccEEEEECCCCcEEEEEecCcccccc
Confidence 44556532 233333333466777888999999999986332 367999999998765444444321
Q ss_pred ---------eeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEE
Q 042957 181 ---------YKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFS 251 (371)
Q Consensus 181 ---------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv 251 (371)
...-.++-.+-|+++=...+..+ .-.+-..|+.+-.-+.......+......+.++-|.||+
T Consensus 120 ~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g---------~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~ 190 (255)
T smart00284 120 RFPYAWGGFSDIDLAVDENGLWVIYATEQNAG---------KIVISKLNPATLTIENTWITTYNKRSASNAFMICGILYV 190 (255)
T ss_pred ccccccCCCccEEEEEcCCceEEEEeccCCCC---------CEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEE
Confidence 22333455566777744333221 123457888876665555444443333346677889999
Q ss_pred EcCCCCCccCeEEEEeCCCCceE
Q 042957 252 SGDCLKAWKGHIESYDGELNMWD 274 (371)
Q Consensus 252 ~GG~~~~~~~~~~~yd~~~~~W~ 274 (371)
+-........-.++||+.+++=.
T Consensus 191 ~~s~~~~~~~I~yayDt~t~~~~ 213 (255)
T smart00284 191 TRSLGSKGEKVFYAYDTNTGKEG 213 (255)
T ss_pred EccCCCCCcEEEEEEECCCCccc
Confidence 96433333345889999987633
No 62
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.96 E-value=0.095 Score=46.46 Aligned_cols=164 Identities=10% Similarity=0.045 Sum_probs=97.9
Q ss_pred CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC-----CCCeeeecCCCCCCCCCeeEEEECCEEEEEcCC
Q 042957 74 GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV-----KSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGK 148 (371)
Q Consensus 74 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-----~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 148 (371)
++++|++.+.. ...++.|.- ..+...+.-.+|.+-.+.+.+++++.+|---.
T Consensus 30 ~~~iy~~~~~~----------------------~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~- 86 (250)
T PF02191_consen 30 SEKIYVTSGFS----------------------GNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY- 86 (250)
T ss_pred CCCEEEECccC----------------------CCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-
Confidence 45788888764 224555532 23333344456667778888889999887633
Q ss_pred CCCCCCCCCceEEEEeCCCCceEeCCCCCCCc------------eeeEEEEECCEEEEEecccCCCCCCCCccccccCee
Q 042957 149 SNLFSAKGTASAEVYHPELDQWTPLPNMSTLR------------YKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSA 216 (371)
Q Consensus 149 ~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~------------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v 216 (371)
.+..+-.||+.+.+-.....||.+. ...-.++-++-|+|+=....... .-.+
T Consensus 87 -------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g---------~ivv 150 (250)
T PF02191_consen 87 -------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG---------NIVV 150 (250)
T ss_pred -------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC---------cEEE
Confidence 2578999999998655222233222 22334455666888865544331 1245
Q ss_pred EEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 217 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
-..|+.+-.-+..............+.++-|.||++.........-.++||+.+++=..+
T Consensus 151 skld~~tL~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV 210 (250)
T ss_pred EeeCcccCceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece
Confidence 667777655444433222222222466778999999766544344578999998766554
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.84 E-value=0.28 Score=44.10 Aligned_cols=134 Identities=14% Similarity=0.061 Sum_probs=64.5
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEEC-CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe-CCCCCCCceeeEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD-NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP-LPNMSTLRYKCVG 185 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~~~~~~ 185 (371)
..+.++|+.+++-...-.... ........-+ ..+|+.++.+ ..+.+||..+.+... ++...... ...
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~~~~~~~~~~~~~--~~~ 79 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGEVIGTLPSGPDPE--LFA 79 (300)
T ss_pred CEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCC--------CeEEEEECCCCcEEEeccCCCCcc--EEE
Confidence 467888887765332211111 1111222223 4577776543 468889988876543 22111111 111
Q ss_pred EEEC-CEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEE-ECCEEEEEcCCCCCccCeE
Q 042957 186 VTWQ-GKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVE-VDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 186 ~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 263 (371)
..-+ +.+|+.++.. ..+..||+.+.+- +..++.... ...++. -++++++++.... ..+
T Consensus 80 ~~~~g~~l~~~~~~~--------------~~l~~~d~~~~~~--~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~---~~~ 139 (300)
T TIGR03866 80 LHPNGKILYIANEDD--------------NLVTVIDIETRKV--LAEIPVGVE-PEGMAVSPDGKIVVNTSETT---NMA 139 (300)
T ss_pred ECCCCCEEEEEcCCC--------------CeEEEEECCCCeE--EeEeeCCCC-cceEEECCCCCEEEEEecCC---CeE
Confidence 2223 4566665321 4688899987542 222221111 123333 3566666654322 236
Q ss_pred EEEeCCCCc
Q 042957 264 ESYDGELNM 272 (371)
Q Consensus 264 ~~yd~~~~~ 272 (371)
..||..+..
T Consensus 140 ~~~d~~~~~ 148 (300)
T TIGR03866 140 HFIDTKTYE 148 (300)
T ss_pred EEEeCCCCe
Confidence 677877643
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.80 E-value=0.1 Score=46.12 Aligned_cols=185 Identities=13% Similarity=0.054 Sum_probs=99.1
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEE--CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL--GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
..++++|+.++.-..+.... ..+++.. ++.+|+.... ...++|+
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g~l~v~~~~-------------------------~~~~~d~ 67 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDGRLYVADSG-------------------------GIAVVDP 67 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS---------EEEEEEECTTSEEEEEETT-------------------------CEEEEET
T ss_pred CEEEEEECCCCeEEEEecCC---------CceEEEEccCCEEEEEEcC-------------------------ceEEEec
Confidence 56999999988765433221 1155555 6788887543 2456699
Q ss_pred CCCeeeecCCCC-----CCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECC
Q 042957 116 KSNEWTRCAPLS-----VPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQG 190 (371)
Q Consensus 116 ~~~~W~~~~~~~-----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~ 190 (371)
.+++++.+...+ ..+.+-.++--+++||+---............++++++. .+.+.+..- ..+....+..-++
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg 145 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDG 145 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTS
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcc
Confidence 999998876542 223333444447888885322110011111679999998 665554321 1111112223344
Q ss_pred -EEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeecc---ccccCCCCCCeEEEE-CCEEEEEcCCCCCccCeE
Q 042957 191 -KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVA---RMWQLDIPPNQIVEV-DNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 191 -~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~---~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~ 263 (371)
.||+.-- ....++.||+.... +.... .++.......++++- ++.||+..-.. ..|
T Consensus 146 ~~lyv~ds--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----~~I 207 (246)
T PF08450_consen 146 KTLYVADS--------------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----GRI 207 (246)
T ss_dssp SEEEEEET--------------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT----TEE
T ss_pred hheeeccc--------------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC----CEE
Confidence 5777542 22578888886433 43222 222221112355553 67899873212 259
Q ss_pred EEEeCCCCceEee
Q 042957 264 ESYDGELNMWDEV 276 (371)
Q Consensus 264 ~~yd~~~~~W~~~ 276 (371)
.+||++...-..+
T Consensus 208 ~~~~p~G~~~~~i 220 (246)
T PF08450_consen 208 VVFDPDGKLLREI 220 (246)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEECCCccEEEEE
Confidence 9999996666665
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.43 E-value=0.07 Score=48.09 Aligned_cols=112 Identities=15% Similarity=0.310 Sum_probs=68.7
Q ss_pred cCeeEEEECCCCceeeccccccCCCCCCeEEEE-CCEEEEEcCCC--CCccCeEEEEeCCCCceEeecCcccccCCCCcc
Q 042957 213 RSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV-DNRLFSSGDCL--KAWKGHIESYDGELNMWDEVNGSCLQTLSSPVS 289 (371)
Q Consensus 213 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~--~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~ 289 (371)
+..+..||+.+.+|..+..-.... ...+... +++||+.|-.. +.....+-.||.++.+|+.++......++.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~--V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-- 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT--VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP-- 90 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE--EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc--
Confidence 578999999999999987542221 1234444 67777777432 2234579999999999999953211234433
Q ss_pred cCCCCCCCCCCceeeeeeEeeeCC-eEEEEcceeecccccceeeEEEEeecccccccccccCc
Q 042957 290 TSSTNTEDWPPIQRLYLTMAPIGT-HLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEP 351 (371)
Q Consensus 290 ~~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~ 351 (371)
.........+. .+++.|.. . ....-+..||-. +|..+..
T Consensus 91 -------------v~a~~~~~~d~~~~~~aG~~-~-----~g~~~l~~~dGs----~W~~i~~ 130 (281)
T PF12768_consen 91 -------------VTALTFISNDGSNFWVAGRS-A-----NGSTFLMKYDGS----SWSSIGS 130 (281)
T ss_pred -------------EEEEEeeccCCceEEEecee-c-----CCCceEEEEcCC----ceEeccc
Confidence 32223333333 56666654 2 224567777655 7999976
No 66
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.40 E-value=0.38 Score=43.42 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=66.0
Q ss_pred CceEEEEeCCCCceEeCCCCCCCceeeEEEE-ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc-
Q 042957 157 TASAEVYHPELDQWTPLPNMSTLRYKCVGVT-WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ- 234 (371)
Q Consensus 157 ~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~- 234 (371)
...+-.||..+.+|.....--.+. -..+.. -+++||+.|-...... ....+..||.++++|+.+..-..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~--------~~~~la~yd~~~~~w~~~~~~~s~ 85 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGT--------NSSNLATYDFKNQTWSSLGGGSSN 85 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCC--------CceeEEEEecCCCeeeecCCcccc
Confidence 456788999999999986532221 122232 3778888886554442 12568899999999998876321
Q ss_pred -CCCCCCeEEE---ECCEEEEEcCCCCCccCeEEEEeCCCCceEeec
Q 042957 235 -LDIPPNQIVE---VDNRLFSSGDCLKAWKGHIESYDGELNMWDEVN 277 (371)
Q Consensus 235 -~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~ 277 (371)
......+... -..++++.|.. ......+..| +..+|+.+.
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKY--DGSSWSSIG 129 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEecee-cCCCceEEEE--cCCceEecc
Confidence 1111112222 23467777765 2223456677 456799994
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.40 E-value=0.16 Score=47.62 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=87.3
Q ss_pred CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCC--CeeEEEECCE-EEEEcCCCC
Q 042957 74 GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRY--DFACTVCDNK-IYVAGGKSN 150 (371)
Q Consensus 74 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~~-lyv~GG~~~ 150 (371)
.-.+.+.+|.+ ..-.+|..|-.+|. .+..+...+. ..+...-+|. ..+++|+.
T Consensus 224 ~~plllvaG~d---------------------~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr- 279 (514)
T KOG2055|consen 224 TAPLLLVAGLD---------------------GTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR- 279 (514)
T ss_pred CCceEEEecCC---------------------CcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-
Confidence 35689999986 24567777777776 3333221111 1222222444 77777763
Q ss_pred CCCCCCCceEEEEeCCCCceEeCCCCC---CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCcee
Q 042957 151 LFSAKGTASAEVYHPELDQWTPLPNMS---TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWD 227 (371)
Q Consensus 151 ~~~~~~~~~~~~yd~~t~~W~~~~~~p---~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~ 227 (371)
.-.+.||.++.+-.++.++- ......--+..++++.++.|.. .-|......|+.|.
T Consensus 280 -------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--------------G~I~lLhakT~eli 338 (514)
T KOG2055|consen 280 -------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--------------GHIHLLHAKTKELI 338 (514)
T ss_pred -------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC--------------ceEEeehhhhhhhh
Confidence 45899999999888887532 1112222244555666666644 35677888888875
Q ss_pred eccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 228 LVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
.--.++..... ......+.+|++.||... |+++|+..+.
T Consensus 339 ~s~KieG~v~~-~~fsSdsk~l~~~~~~Ge-----V~v~nl~~~~ 377 (514)
T KOG2055|consen 339 TSFKIEGVVSD-FTFSSDSKELLASGGTGE-----VYVWNLRQNS 377 (514)
T ss_pred heeeeccEEee-EEEecCCcEEEEEcCCce-----EEEEecCCcc
Confidence 44444322211 123334567888887654 9999999874
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.32 E-value=0.49 Score=41.97 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=98.2
Q ss_pred EEEE-ECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcC
Q 042957 69 SIVS-LGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGG 147 (371)
Q Consensus 69 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG 147 (371)
++.. .++.+|.--|.. ..+.+.+||+.+++-.+..++|..-.+=+++..+++||..-=
T Consensus 49 GL~~~~~g~LyESTG~y---------------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW 107 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLY---------------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW 107 (264)
T ss_dssp EEEEEETTEEEEEECST---------------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES
T ss_pred cEEecCCCEEEEeCCCC---------------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe
Confidence 5666 578999998875 246789999999987777777766666789999999999954
Q ss_pred CCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCcee
Q 042957 148 KSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWD 227 (371)
Q Consensus 148 ~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~ 227 (371)
. ....++||..+ .+.+...+.+..+..++..+..|++--| .+.++..||++-+-.
T Consensus 108 k--------~~~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDG---------------S~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 108 K--------EGTGFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDG---------------SSRLYFLDPETFKEV 162 (264)
T ss_dssp S--------SSEEEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-S---------------SSEEEEE-TTT-SEE
T ss_pred c--------CCeEEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECC---------------ccceEEECCcccceE
Confidence 4 35789999976 4666555555677777877777887765 257888898864322
Q ss_pred eccccccC---CCCCCeEEEECCEEEEEcCCCCCc-cCeEEEEeCCCCceEee
Q 042957 228 LVARMWQL---DIPPNQIVEVDNRLFSSGDCLKAW-KGHIESYDGELNMWDEV 276 (371)
Q Consensus 228 ~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~yd~~~~~W~~~ 276 (371)
..-..... ...-.-+-.++++||. +-+ .+.|.+-||++..-...
T Consensus 163 ~~i~V~~~g~pv~~LNELE~i~G~IyA-----NVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 163 RTIQVTDNGRPVSNLNELEYINGKIYA-----NVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEEE-EETTEE---EEEEEEETTEEEE-----EETTSSEEEEEETTT-BEEEE
T ss_pred EEEEEEECCEECCCcEeEEEEcCEEEE-----EeCCCCeEEEEeCCCCeEEEE
Confidence 21111111 1111135555666664 222 35799999999886654
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.92 E-value=0.33 Score=45.63 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=93.4
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
-.++..|-++|. .+..+--.. .|......+.-+....+++|+ ..-++.||..+
T Consensus 237 lrifqvDGk~N~--~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~r-----------------------rky~ysyDle~ 289 (514)
T KOG2055|consen 237 LRIFQVDGKVNP--KLQSIHLEK--FPIQKAEFAPNGHSVIFTSGR-----------------------RKYLYSYDLET 289 (514)
T ss_pred EEEEEecCccCh--hheeeeecc--CccceeeecCCCceEEEeccc-----------------------ceEEEEeeccc
Confidence 447777877777 333322111 111222222223447778776 35589999999
Q ss_pred CeeeecCCCC--C--CCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEE
Q 042957 118 NEWTRCAPLS--V--PRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIH 193 (371)
Q Consensus 118 ~~W~~~~~~~--~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~ly 193 (371)
.+-.++.++- . ....|.+...++ ++++-|.. .-++.+...|+.|-.--.++...........+..|+
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~--------G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNN--------GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCC-eEEEcccC--------ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEE
Confidence 9888876543 1 123444444444 55555553 247777777777744333443333333334455677
Q ss_pred EEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCe-EEEECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 194 VVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQ-IVEVDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 194 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
+.||. ..|+++|+.++.-.....- .......+ +...++..+..|...+ -+-+||.++
T Consensus 361 ~~~~~---------------GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~G----iVNIYd~~s 418 (514)
T KOG2055|consen 361 ASGGT---------------GEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSG----IVNIYDGNS 418 (514)
T ss_pred EEcCC---------------ceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcc----eEEEeccch
Confidence 77753 3789999998842222111 11111112 2335666556554322 266666544
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.74 E-value=0.63 Score=41.28 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=76.8
Q ss_pred eEEE-ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccc
Q 042957 134 ACTV-CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTE 212 (371)
Q Consensus 134 ~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 212 (371)
++.. .++.+|.--|.-+ .+.+..+|+.+++-....++|....+-.++.++++||..-=..
T Consensus 49 GL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~------------- 109 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE------------- 109 (264)
T ss_dssp EEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-------------
T ss_pred cEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-------------
Confidence 4555 5789999877642 4789999999998887778888888888899999999998433
Q ss_pred cCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 213 RSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 213 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
....+||+.+ .+.+...+-+.. +-+++..+.+|++..|.. .++..||++
T Consensus 110 -~~~f~yd~~t--l~~~~~~~y~~E-GWGLt~dg~~Li~SDGS~-----~L~~~dP~~ 158 (264)
T PF05096_consen 110 -GTGFVYDPNT--LKKIGTFPYPGE-GWGLTSDGKRLIMSDGSS-----RLYFLDPET 158 (264)
T ss_dssp -SEEEEEETTT--TEEEEEEE-SSS---EEEECSSCEEEE-SSS-----EEEEE-TTT
T ss_pred -CeEEEEcccc--ceEEEEEecCCc-ceEEEcCCCEEEEECCcc-----ceEEECCcc
Confidence 4678999986 455554443332 347887788888887754 499999986
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.087 Score=49.59 Aligned_cols=136 Identities=15% Similarity=0.243 Sum_probs=79.5
Q ss_pred ceEEEEeCCCCceEe-CCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCC
Q 042957 158 ASAEVYHPELDQWTP-LPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLD 236 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~-~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~ 236 (371)
..+..|+..+..-.+ +..+....+ .+..-.+|+|+.+|+.. ..+.+||.++..- +..+..-.
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~-s~~fR~DG~LlaaGD~s--------------G~V~vfD~k~r~i--LR~~~ah~ 110 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVY-SVDFRSDGRLLAAGDES--------------GHVKVFDMKSRVI--LRQLYAHQ 110 (487)
T ss_pred cEEEEEecchhhhhhhHHhhcccee-EEEeecCCeEEEccCCc--------------CcEEEeccccHHH--HHHHhhcc
Confidence 457777776543322 222222222 22345689999999754 3678999655321 11111111
Q ss_pred CCCC--eEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCe
Q 042957 237 IPPN--QIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTH 314 (371)
Q Consensus 237 ~~~~--~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 314 (371)
.+.+ .....+++++++|+.... +..+|..+..- . .++... -......++...+++
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd~v----~k~~d~s~a~v--~-----~~l~~h------------tDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDDKV----VKYWDLSTAYV--Q-----AELSGH------------TDYVRCGDISPANDH 167 (487)
T ss_pred CceeEEEecccCCeEEEecCCCce----EEEEEcCCcEE--E-----EEecCC------------cceeEeeccccCCCe
Confidence 1111 233468999999886653 67777777663 2 233322 122455666777899
Q ss_pred EEEEcceeecccccceeeEEEEeecccc
Q 042957 315 LYFLAGYRMAGELARTMSMVHIFDTAAK 342 (371)
Q Consensus 315 l~v~GG~~~~~~~~~~~~~v~~~d~~~~ 342 (371)
|++.||+++ .|-.||..+.
T Consensus 168 ivvtGsYDg---------~vrl~DtR~~ 186 (487)
T KOG0310|consen 168 IVVTGSYDG---------KVRLWDTRSL 186 (487)
T ss_pred EEEecCCCc---------eEEEEEeccC
Confidence 999999986 5778888876
No 72
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.41 E-value=1.9 Score=38.62 Aligned_cols=175 Identities=12% Similarity=0.023 Sum_probs=83.6
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEE-C-CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL-G-DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
..+..||+.+++-...-.... .+ .+++.. + ..+|+.++. ...+..||.
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~----~~---~~l~~~~dg~~l~~~~~~-----------------------~~~v~~~d~ 60 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ----RP---RGITLSKDGKLLYVCASD-----------------------SDTIQVIDL 60 (300)
T ss_pred CEEEEEECCCCceEEEEECCC----CC---CceEECCCCCEEEEEECC-----------------------CCeEEEEEC
Confidence 468889988776333221111 11 133333 3 357777654 356888998
Q ss_pred CCCeeee-cCCCCCCCCCeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE-EECCEE
Q 042957 116 KSNEWTR-CAPLSVPRYDFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV-TWQGKI 192 (371)
Q Consensus 116 ~~~~W~~-~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~l 192 (371)
.+.+... ++....+ ...+..- ++.+|+.++.+ ..+.+||..+.+- +..++.......++ .-++++
T Consensus 61 ~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~--------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~ 128 (300)
T TIGR03866 61 ATGEVIGTLPSGPDP--ELFALHPNGKILYIANEDD--------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKI 128 (300)
T ss_pred CCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCCC--------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCE
Confidence 8876543 2221111 1111222 34566665432 3688899887532 22222111112222 336666
Q ss_pred EEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEE-EECCEEEEEcCCCCCccCeEEEEeCCCC
Q 042957 193 HVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIV-EVDNRLFSSGDCLKAWKGHIESYDGELN 271 (371)
Q Consensus 193 yv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~yd~~~~ 271 (371)
++++.... ..+..||..+.+-... +...... ..++ .-+++.+++++... ..+.+||.++.
T Consensus 129 l~~~~~~~-------------~~~~~~d~~~~~~~~~--~~~~~~~-~~~~~s~dg~~l~~~~~~~---~~v~i~d~~~~ 189 (300)
T TIGR03866 129 VVNTSETT-------------NMAHFIDTKTYEIVDN--VLVDQRP-RFAEFTADGKELWVSSEIG---GTVSVIDVATR 189 (300)
T ss_pred EEEEecCC-------------CeEEEEeCCCCeEEEE--EEcCCCc-cEEEECCCCCEEEEEcCCC---CEEEEEEcCcc
Confidence 66664221 2455678776543221 1111111 1222 23455444443211 25999999876
Q ss_pred ce
Q 042957 272 MW 273 (371)
Q Consensus 272 ~W 273 (371)
+.
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 43
No 73
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.38 E-value=2.7 Score=40.21 Aligned_cols=146 Identities=14% Similarity=-0.006 Sum_probs=78.2
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
..++++|..+++-..+......... ....-++ .|++.....+ ...++.+|..++..+.+.......... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~ 285 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNGPGIDTEP-SW 285 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCCCCCCCCE-EE
Confidence 5788999988766665543322222 2222344 5655533321 257899999988877775433211111 12
Q ss_pred EECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEE
Q 042957 187 TWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 265 (371)
..+++ |++.....+ ...++.+|+.+..++.+.... .........-+++.+++..... ....+++
T Consensus 286 s~dg~~l~~~s~~~g------------~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~-~~~~i~~ 350 (417)
T TIGR02800 286 SPDGKSIAFTSDRGG------------SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG-GGFNIAV 350 (417)
T ss_pred CCCCCEEEEEECCCC------------CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC-CceEEEE
Confidence 23444 544432221 137889999888877664221 1111112223455555543322 1236999
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
+|+.+..++.+
T Consensus 351 ~d~~~~~~~~l 361 (417)
T TIGR02800 351 MDLDGGGERVL 361 (417)
T ss_pred EeCCCCCeEEc
Confidence 99999877776
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.30 E-value=3.1 Score=40.47 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=58.7
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEEEECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCC
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLD 236 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~ 236 (371)
..++++|..+++-+.+...+...... ...-++ +|++.....+ ...++.+|+.+++.+.+.......
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~g------------~~~Iy~~dl~tg~~~~lt~~~~~~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKDG------------QPEIYVVDIATKALTRITRHRAID 308 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCCC------------CeEEEEEECCCCCeEECccCCCCc
Confidence 57999999988777776554322222 223344 4655442221 147899999998887765422111
Q ss_pred CCCCeEEEEC-CEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 237 IPPNQIVEVD-NRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 237 ~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
......-+ .+|++...... ...++++|+++++++.+
T Consensus 309 --~~p~wSpDG~~I~f~s~~~g--~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 309 --TEPSWHPDGKSLIFTSERGG--KPQIYRVNLASGKVSRL 345 (448)
T ss_pred --cceEECCCCCEEEEEECCCC--CceEEEEECCCCCEEEE
Confidence 11111223 34555432221 24799999999999887
No 75
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.22 E-value=3.2 Score=40.15 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=77.6
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEEC-CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD-NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
..++++|..+++-+.+...+.. .......-+ .+|++....++ ...++++|..++..+++..-...... ...
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~ 299 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTNHFGIDTE-PTW 299 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECccCCCCccc-eEE
Confidence 4688899988877766554321 112222234 45655433221 25799999998887766532221111 122
Q ss_pred EECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCC-eEEEECCEEEEEcCCCCCccCeEE
Q 042957 187 TWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPN-QIVEVDNRLFSSGDCLKAWKGHIE 264 (371)
Q Consensus 187 ~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~ 264 (371)
.-+++ |+......+ ...++.+|..++..+.+.... ..... ...--++.|++..+... ...++
T Consensus 300 spDG~~l~f~sd~~g------------~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~--~~~I~ 363 (433)
T PRK04922 300 APDGKSIYFTSDRGG------------RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGSGG--QYRIA 363 (433)
T ss_pred CCCCCEEEEEECCCC------------CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECCCC--ceeEE
Confidence 33454 444332221 136888999888877664211 11111 11112455655543221 12699
Q ss_pred EEeCCCCceEee
Q 042957 265 SYDGELNMWDEV 276 (371)
Q Consensus 265 ~yd~~~~~W~~~ 276 (371)
++|+.++..+.+
T Consensus 364 v~d~~~g~~~~L 375 (433)
T PRK04922 364 VMDLSTGSVRTL 375 (433)
T ss_pred EEECCCCCeEEC
Confidence 999999888877
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.00 E-value=1.2 Score=42.22 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=62.4
Q ss_pred EEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc-eEeCC--CCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccc
Q 042957 136 TVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ-WTPLP--NMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTE 212 (371)
Q Consensus 136 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~-W~~~~--~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 212 (371)
+-.+|+|+++|+..+ .+.+||.++.. -+.+. ..|..+. .....++.+++.|+-.
T Consensus 76 fR~DG~LlaaGD~sG--------~V~vfD~k~r~iLR~~~ah~apv~~~--~f~~~d~t~l~s~sDd------------- 132 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESG--------HVKVFDMKSRVILRQLYAHQAPVHVT--KFSPQDNTMLVSGSDD------------- 132 (487)
T ss_pred eecCCeEEEccCCcC--------cEEEeccccHHHHHHHhhccCceeEE--EecccCCeEEEecCCC-------------
Confidence 335899999998763 58889955411 01111 1111111 1124588899998533
Q ss_pred cCeeEEEECCCCceeeccccccCCCCCC-eEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 213 RSSAEVYDTQAGKWDLVARMWQLDIPPN-QIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 213 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
..+..+|..+..- +..-.....+-++ .+.-.+++|++.||++.. +..||+.+.+
T Consensus 133 -~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~----vrl~DtR~~~ 187 (487)
T KOG0310|consen 133 -KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGK----VRLWDTRSLT 187 (487)
T ss_pred -ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCce----EEEEEeccCC
Confidence 3455667766652 2211111111111 244558899999998775 9999998874
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.00 E-value=2.3 Score=37.42 Aligned_cols=138 Identities=21% Similarity=0.208 Sum_probs=77.9
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEE--ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCC-----CC
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTV--CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMS-----TL 179 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p-----~~ 179 (371)
...++++|+.+++-+.+.... ..+++. -++++|+.... ...++|+.+.+++.+...+ ..
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADSG----------GIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEETT----------CEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEcC----------ceEEEecCCCcEEEEeeccCCCcccC
Confidence 467999999988765543222 233333 37888888543 2466699999998876553 22
Q ss_pred ceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEE--CCEEEEEcCCCC
Q 042957 180 RYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV--DNRLFSSGDCLK 257 (371)
Q Consensus 180 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~ 257 (371)
+..-.++.-+++||+-.-........ ....++++++. .+.+.+..-. . ...+++.. ++.||+.--
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~------~~g~v~~~~~~-~~~~~~~~~~--~-~pNGi~~s~dg~~lyv~ds--- 153 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGI------DPGSVYRIDPD-GKVTVVADGL--G-FPNGIAFSPDGKTLYVADS--- 153 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCG------GSEEEEEEETT-SEEEEEEEEE--S-SEEEEEEETTSSEEEEEET---
T ss_pred CCceEEEcCCCCEEEEecCCCccccc------cccceEEECCC-CeEEEEecCc--c-cccceEECCcchheeeccc---
Confidence 33333344578888765322211100 01468999999 6655553221 1 12355554 346777633
Q ss_pred CccCeEEEEeCCCCc
Q 042957 258 AWKGHIESYDGELNM 272 (371)
Q Consensus 258 ~~~~~~~~yd~~~~~ 272 (371)
....+++|++....
T Consensus 154 -~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 154 -FNGRIWRFDLDADG 167 (246)
T ss_dssp -TTTEEEEEEEETTT
T ss_pred -ccceeEEEeccccc
Confidence 23359999986443
No 78
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.95 E-value=3.7 Score=39.54 Aligned_cols=146 Identities=10% Similarity=-0.021 Sum_probs=78.6
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEEC-CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCD-NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
..+|++|+.+++-+++......- ......-+ .+|++....++ ...++++|..+...+++...+.....+ ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~ 294 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNHPAIDTEP-FW 294 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccCCCCcCCe-EE
Confidence 46888898888777765443211 11122224 45554432221 257999999999888775433211111 22
Q ss_pred EECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEE
Q 042957 187 TWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 265 (371)
.-++ +|++.....+ ...++.+|+.++.++.+.... .........--++.|++...... ...++.
T Consensus 295 spDg~~i~f~s~~~g------------~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~--~~~l~~ 359 (430)
T PRK00178 295 GKDGRTLYFTSDRGG------------KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG--NFHVAA 359 (430)
T ss_pred CCCCCEEEEEECCCC------------CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC--ceEEEE
Confidence 2344 4555432211 246888999888887764221 11111111122445555543222 235999
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
+|+.+...+.+
T Consensus 360 ~dl~tg~~~~l 370 (430)
T PRK00178 360 QDLQRGSVRIL 370 (430)
T ss_pred EECCCCCEEEc
Confidence 99999988887
No 79
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=94.81 E-value=2.6 Score=37.05 Aligned_cols=161 Identities=10% Similarity=0.122 Sum_probs=79.6
Q ss_pred ccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE---CCCCeeee--cCCCCC-------CCCC
Q 042957 65 LKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN---VKSNEWTR--CAPLSV-------PRYD 132 (371)
Q Consensus 65 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd---~~~~~W~~--~~~~~~-------~r~~ 132 (371)
-++.+|-++++++|.+=-.. +-....+...+.|| +..+.|+. ++..+. .-.-
T Consensus 75 yHCmSMGv~~NRLfa~iEtR----------------~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~ 138 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETR----------------TVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTEL 138 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEE----------------ETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEE
T ss_pred eeeeeeeeecceeeEEEeeh----------------hhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeee
Confidence 35778999999999873221 11223455566665 46788965 344432 2345
Q ss_pred eeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCce--------EeCCC-CCCCceeeEEEEECCEEEEEe-cccCCC
Q 042957 133 FACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQW--------TPLPN-MSTLRYKCVGVTWQGKIHVVS-GFAQRA 202 (371)
Q Consensus 133 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W--------~~~~~-~p~~~~~~~~~~~~~~lyv~G-G~~~~~ 202 (371)
|+.+.+++.-|.+|=..++ .....+-++-. ++.| +.++. +......+.+-..+++||+.- |.....
T Consensus 139 HSFa~i~~~~fA~GyHnGD---~sPRe~G~~yf-s~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~ 214 (367)
T PF12217_consen 139 HSFATIDDNQFAVGYHNGD---VSPRELGFLYF-SDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTN 214 (367)
T ss_dssp EEEEE-SSS-EEEEEEE-S---SSS-EEEEEEE-TTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS
T ss_pred eeeeEecCCceeEEeccCC---CCcceeeEEEe-cccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCC
Confidence 7788888888888754432 22333333221 1122 22332 222334445557899999986 333322
Q ss_pred CCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcC
Q 042957 203 DSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGD 254 (371)
Q Consensus 203 ~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG 254 (371)
.-..+.+-+..-..|+.+.-........-..+..++.||+||-
T Consensus 215 ---------~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 215 ---------PGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp ------------EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred ---------CcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 2356677777778899885433222222246788999999983
No 80
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.58 E-value=2.5 Score=35.87 Aligned_cols=100 Identities=16% Similarity=0.057 Sum_probs=53.8
Q ss_pred CEEEEEcCCCCCCCCCCCceEEEEeCCCCce---EeCC--CCCC--CceeeEEEEE-CCEEEEEecccCCCCCCCCcccc
Q 042957 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQW---TPLP--NMST--LRYKCVGVTW-QGKIHVVSGFAQRADSDGSVHFT 211 (371)
Q Consensus 140 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W---~~~~--~~p~--~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~ 211 (371)
+++|+|-|. ..++|+..+..+ +.+. .+|. ....++.... ++++|+|.|
T Consensus 63 ~~~yfFkg~----------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------------- 118 (194)
T cd00094 63 GKIYFFKGD----------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------------- 118 (194)
T ss_pred CEEEEECCC----------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------------
Confidence 899999664 367776554222 1111 1121 1222332222 689999986
Q ss_pred ccCeeEEEECCCCceeec-----cc-cc-cCCCCCCeEEEEC-CEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 212 ERSSAEVYDTQAGKWDLV-----AR-MW-QLDIPPNQIVEVD-NRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 212 ~~~~v~~yd~~t~~W~~~-----~~-~~-~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
+..++||..+++.+.- .. .+ .+.. ..++.... +++|++-|. ..++||..+.+
T Consensus 119 --~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~-idaa~~~~~~~~yfF~g~------~y~~~d~~~~~ 178 (194)
T cd00094 119 --DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK-VDAAFRWLDGYYYFFKGD------QYWRFDPRSKE 178 (194)
T ss_pred --CEEEEEeCCCccccCCCCcchhhcCCCcCCC-cceeEEeCCCcEEEEECC------EEEEEeCccce
Confidence 4567787765554211 10 01 1111 12333344 889999663 58999998765
No 81
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.49 E-value=3.2 Score=36.91 Aligned_cols=184 Identities=12% Similarity=0.099 Sum_probs=102.0
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEEC--CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLG--DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
+.|-++|+++-.-++++-..+ ++-.+.-.+++| +.|+..|-... . =++||
T Consensus 124 ~aI~R~dpkt~evt~f~lp~~----~a~~nlet~vfD~~G~lWFt~q~G~---------------------y---GrLdP 175 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLPLE----HADANLETAVFDPWGNLWFTGQIGA---------------------Y---GRLDP 175 (353)
T ss_pred ceeEEecCcccceEEeecccc----cCCCcccceeeCCCccEEEeecccc---------------------c---eecCc
Confidence 368899998887777653221 223344455554 57887764321 1 15666
Q ss_pred CCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCC-ceee--EEEEECCEE
Q 042957 116 KSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTL-RYKC--VGVTWQGKI 192 (371)
Q Consensus 116 ~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-~~~~--~~~~~~~~l 192 (371)
.++.-+..+...-.--+..++.-++.+|...=.. +-+-..|+.+..=+.++. |.+ .... .-+--.+++
T Consensus 176 a~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag--------naiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~ 246 (353)
T COG4257 176 ARNVISVFPAPQGGGPYGICATPDGSVWYASLAG--------NAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRA 246 (353)
T ss_pred ccCceeeeccCCCCCCcceEECCCCcEEEEeccc--------cceEEcccccCCcceecC-CCcccccccccccCccCcE
Confidence 6665544443322223344555688888762221 346667777765444432 222 1111 112234667
Q ss_pred EEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 193 HVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 193 yv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
++.- . ....+..||+.+..|..-+-..........-+--.+++++..- ..+.+.+||+++-+
T Consensus 247 witt---w-----------g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea----~agai~rfdpeta~ 308 (353)
T COG4257 247 WITT---W-----------GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA----DAGAIGRFDPETAR 308 (353)
T ss_pred EEec---c-----------CCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc----ccCceeecCcccce
Confidence 7662 1 1247899999999998775333322322222223456777532 22359999999999
Q ss_pred eEee
Q 042957 273 WDEV 276 (371)
Q Consensus 273 W~~~ 276 (371)
++.+
T Consensus 309 ftv~ 312 (353)
T COG4257 309 FTVL 312 (353)
T ss_pred EEEe
Confidence 9998
No 82
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.35 E-value=5.3 Score=38.62 Aligned_cols=103 Identities=9% Similarity=0.059 Sum_probs=57.1
Q ss_pred CceEEEEeCCCCceEeCCCCCCCceeeEEEEECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccC
Q 042957 157 TASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQL 235 (371)
Q Consensus 157 ~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 235 (371)
...++++|..+++-+.+...+.... .....-++ +|++.....+ ...++++|+.++..+.+......
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g------------~~~Iy~~d~~~g~~~~lt~~~~~ 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG------------NPEIYVMDLGSRQLTRLTNHFGI 293 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC------------CceEEEEECCCCCeEECccCCCC
Confidence 3578999999888777765543222 12223344 4554432221 14789999998876665432211
Q ss_pred CCCCCeEEEECC-EEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 236 DIPPNQIVEVDN-RLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 236 ~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
.. .....-++ +|++...... ...++.+|..+...+.+
T Consensus 294 ~~--~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 294 DT--EPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERL 331 (433)
T ss_pred cc--ceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEe
Confidence 11 11112234 4544432221 24699999988888877
No 83
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.19 E-value=5.9 Score=38.53 Aligned_cols=148 Identities=10% Similarity=-0.031 Sum_probs=80.2
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
...+|.+|..+++-+.+...+......+...-+.+|++....++ ...++.+|..+++.+++..-..... ....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~w 313 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITRHRAIDT-EPSW 313 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECccCCCCcc-ceEE
Confidence 35799999988877666554322122222122445665543321 3579999999988887754321111 1222
Q ss_pred EECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEE
Q 042957 187 TWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 265 (371)
.-+++ |++.....+ ...++.+|+.+++++.+..... ........--++.|++...... ...+++
T Consensus 314 SpDG~~I~f~s~~~g------------~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g--~~~I~~ 378 (448)
T PRK04792 314 HPDGKSLIFTSERGG------------KPQIYRVNLASGKVSRLTFEGE-QNLGGSITPDGRSMIMVNRTNG--KFNIAR 378 (448)
T ss_pred CCCCCEEEEEECCCC------------CceEEEEECCCCCEEEEecCCC-CCcCeeECCCCCEEEEEEecCC--ceEEEE
Confidence 33444 554432221 1478999999988877642111 1111112122345555432221 236899
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
+|+.+...+.+
T Consensus 379 ~dl~~g~~~~l 389 (448)
T PRK04792 379 QDLETGAMQVL 389 (448)
T ss_pred EECCCCCeEEc
Confidence 99999888777
No 84
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.13 E-value=2.4 Score=39.06 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=68.3
Q ss_pred CEEEEEcCCC-CCCCCCCC-ceEEEEeCCCC-----ceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccc
Q 042957 140 NKIYVAGGKS-NLFSAKGT-ASAEVYHPELD-----QWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTE 212 (371)
Q Consensus 140 ~~lyv~GG~~-~~~~~~~~-~~~~~yd~~t~-----~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 212 (371)
...+++|-.- ........ ..+.+|+.... +.+.+......-.-.+++.++++|.+.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET---------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec---------------
Confidence 4566666432 11122223 77999998885 55555433333334456677898555554
Q ss_pred cCeeEEEECCCCc-eeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 213 RSSAEVYDTQAGK-WDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 213 ~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
+.+..|+..... +........+. ....+...++.|++-.-..+ -.+..|+.+..+-..+
T Consensus 107 -~~l~v~~l~~~~~l~~~~~~~~~~-~i~sl~~~~~~I~vgD~~~s---v~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 107 -NKLYVYDLDNSKTLLKKAFYDSPF-YITSLSVFKNYILVGDAMKS---VSLLRYDEENNKLILV 166 (321)
T ss_dssp -TEEEEEEEETTSSEEEEEEE-BSS-SEEEEEEETTEEEEEESSSS---EEEEEEETTTE-EEEE
T ss_pred -CEEEEEEccCcccchhhheecceE-EEEEEeccccEEEEEEcccC---EEEEEEEccCCEEEEE
Confidence 578888888887 87777665443 23356677886665432222 1466778877777777
No 85
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.08 E-value=1.6 Score=39.89 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=74.4
Q ss_pred CCCCeeEEE-ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEE---EEECCEEEEEecccCCCCC
Q 042957 129 PRYDFACTV-CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVG---VTWQGKIHVVSGFAQRADS 204 (371)
Q Consensus 129 ~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~---~~~~~~lyv~GG~~~~~~~ 204 (371)
...+..++. +++++++.|..+ +.+-++|..+.. ++..-..+..+ ..+++.+.|....+
T Consensus 235 GHtGSVLCLqyd~rviisGSSD--------sTvrvWDv~tge-----~l~tlihHceaVLhlrf~ng~mvtcSkD----- 296 (499)
T KOG0281|consen 235 GHTGSVLCLQYDERVIVSGSSD--------STVRVWDVNTGE-----PLNTLIHHCEAVLHLRFSNGYMVTCSKD----- 296 (499)
T ss_pred cCCCcEEeeeccceEEEecCCC--------ceEEEEeccCCc-----hhhHHhhhcceeEEEEEeCCEEEEecCC-----
Confidence 344444443 688888877765 468889877653 22221112111 23344444443222
Q ss_pred CCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccC
Q 042957 205 DGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTL 284 (371)
Q Consensus 205 ~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l 284 (371)
.++-++|+..-+=..+..........-.++-++++.+|....+ ..+.++++.+....+. +
T Consensus 297 ---------rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgD----RTikvW~~st~efvRt-------l 356 (499)
T KOG0281|consen 297 ---------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD----RTIKVWSTSTCEFVRT-------L 356 (499)
T ss_pred ---------ceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCC----ceEEEEeccceeeehh-------h
Confidence 4566777665441111111111121113455677755543322 2588888888766654 3
Q ss_pred CCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEccee
Q 042957 285 SSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYR 322 (371)
Q Consensus 285 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 322 (371)
... +.+-+++.+.|++.|-|..+
T Consensus 357 ~gH---------------kRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 357 NGH---------------KRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred hcc---------------cccceehhccCeEEEecCCC
Confidence 222 56777888899998877543
No 86
>smart00284 OLF Olfactomedin-like domains.
Probab=94.00 E-value=4.2 Score=36.08 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=88.6
Q ss_pred ccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCC------------C
Q 042957 63 HVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVP------------R 130 (371)
Q Consensus 63 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------------r 130 (371)
++-.+-+.++.++.+|.--. ....+-+||+.+++-.....+|.+ -
T Consensus 72 ~~~~GtG~VVYngslYY~~~-----------------------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~ 128 (255)
T smart00284 72 HAGQGTGVVVYNGSLYFNKF-----------------------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGF 128 (255)
T ss_pred CccccccEEEECceEEEEec-----------------------CCccEEEEECCCCcEEEEEecCccccccccccccCCC
Confidence 34556678888998887522 246799999999875433333322 1
Q ss_pred CCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC----ceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCC
Q 042957 131 YDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD----QWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDG 206 (371)
Q Consensus 131 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~----~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 206 (371)
...-+++-.+-|+++=..... ...-.+-..|+.+. +|..- .+.. ....+.++-|.||++-......
T Consensus 129 sdiDlAvDE~GLWvIYat~~~---~g~ivvSkLnp~tL~ve~tW~T~--~~k~-sa~naFmvCGvLY~~~s~~~~~---- 198 (255)
T smart00284 129 SDIDLAVDENGLWVIYATEQN---AGKIVISKLNPATLTIENTWITT--YNKR-SASNAFMICGILYVTRSLGSKG---- 198 (255)
T ss_pred ccEEEEEcCCceEEEEeccCC---CCCEEEEeeCcccceEEEEEEcC--CCcc-cccccEEEeeEEEEEccCCCCC----
Confidence 223445555666666322211 11123455666654 56552 2222 2234567888999996422221
Q ss_pred CccccccCeeEEEECCCCceeeccccccCCC-CCCeEEEE---CCEEEEEcCCCCCccCeEEEEeCC
Q 042957 207 SVHFTERSSAEVYDTQAGKWDLVARMWQLDI-PPNQIVEV---DNRLFSSGDCLKAWKGHIESYDGE 269 (371)
Q Consensus 207 ~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~yd~~ 269 (371)
....+.||+.+++=+.+ .++-+.. ...++... +++||+.- ...+..||+.
T Consensus 199 ------~~I~yayDt~t~~~~~~-~i~f~n~y~~~s~l~YNP~d~~LY~wd------ng~~l~Y~v~ 252 (255)
T smart00284 199 ------EKVFYAYDTNTGKEGHL-DIPFENMYEYISMLDYNPNDRKLYAWN------NGHLVHYDIA 252 (255)
T ss_pred ------cEEEEEEECCCCcccee-eeeeccccccceeceeCCCCCeEEEEe------CCeEEEEEEE
Confidence 24568899998874433 3332222 22234433 67899883 2246667653
No 87
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.89 E-value=5.9 Score=41.62 Aligned_cols=130 Identities=12% Similarity=0.110 Sum_probs=63.9
Q ss_pred ceEEEEECCCCeeeecCCCCC-CCCCeeEEE--ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSV-PRYDFACTV--CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCV 184 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~ 184 (371)
..+..+|..+++-.. .+.. ...-.+++. .++.+++.|+.+ ..+.+||..+..-. ..+.....-..
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~~~~~--~~~~~~~~v~~ 622 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQGVSI--GTIKTKANICC 622 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCCCcEE--EEEecCCCeEE
Confidence 456777776654322 1111 111122222 256778888875 35888888764321 11111111111
Q ss_pred EEE--ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeeccccccCCCCCCeEEEECCEEEEEcCCCCCcc
Q 042957 185 GVT--WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWK 260 (371)
Q Consensus 185 ~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~ 260 (371)
+.. .++.++++|+.+ ..+.+||+.+.. ...+... ......+...++..++.++.++
T Consensus 623 v~~~~~~g~~latgs~d--------------g~I~iwD~~~~~~~~~~~~~h---~~~V~~v~f~~~~~lvs~s~D~--- 682 (793)
T PLN00181 623 VQFPSESGRSLAFGSAD--------------HKVYYYDLRNPKLPLCTMIGH---SKTVSYVRFVDSSTLVSSSTDN--- 682 (793)
T ss_pred EEEeCCCCCEEEEEeCC--------------CeEEEEECCCCCccceEecCC---CCCEEEEEEeCCCEEEEEECCC---
Confidence 111 246677777533 478899987643 1111110 0111133344666677766544
Q ss_pred CeEEEEeCCC
Q 042957 261 GHIESYDGEL 270 (371)
Q Consensus 261 ~~~~~yd~~~ 270 (371)
.+.+||+..
T Consensus 683 -~ikiWd~~~ 691 (793)
T PLN00181 683 -TLKLWDLSM 691 (793)
T ss_pred -EEEEEeCCC
Confidence 488888864
No 88
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.84 E-value=5.7 Score=37.09 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=92.6
Q ss_pred ceeEEeCCCCceeccCCCCcccccccccceEEEE--ECCEEEEEcCcccccCCCCCCCCCCccccccccccceEE--EEE
Q 042957 39 WLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVS--LGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVL--RYN 114 (371)
Q Consensus 39 ~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~yd 114 (371)
.++.||..+.++..+........+ ..++. -++.||+..... .....+. .++
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~P-----s~l~~~~~~~~LY~~~e~~--------------------~~~g~v~~~~i~ 70 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENP-----SWLAVSPDGRRLYVVNEGS--------------------GDSGGVSSYRID 70 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSE-----CCEEE-TTSSEEEEEETTS--------------------STTTEEEEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCC-----ceEEEEeCCCEEEEEEccc--------------------cCCCCEEEEEEC
Confidence 356778899999887754322211 12444 356788885431 1133444 445
Q ss_pred CCCCeeeecCCCCC-CCCCeeEEE--ECCEEEEEcCCCCCCCCCCCceEEEEeCCCC-ceEeC---------CCC---CC
Q 042957 115 VKSNEWTRCAPLSV-PRYDFACTV--CDNKIYVAGGKSNLFSAKGTASAEVYHPELD-QWTPL---------PNM---ST 178 (371)
Q Consensus 115 ~~~~~W~~~~~~~~-~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~-~W~~~---------~~~---p~ 178 (371)
..+.+.+.+...+. ...-+.++. -+..||+.- +. ...+.+|++..+ +-... .+- ..
T Consensus 71 ~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 71 PDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp TTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred CCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-------CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 55567877765552 333233333 245566652 21 245777776653 11111 111 11
Q ss_pred CceeeEEEEE-C-CEEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeecccc--ccCCCCCCeEEEE--CCEEE
Q 042957 179 LRYKCVGVTW-Q-GKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVARM--WQLDIPPNQIVEV--DNRLF 250 (371)
Q Consensus 179 ~~~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~--~~~~~~~~~~~~~--~~~iy 250 (371)
.-..|.+... + +.+|+..- ..+.|..|+..... ....... +.. ..+..++.. ++.+|
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dl--------------G~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDL--------------GADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAY 207 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEET--------------TTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEE
T ss_pred cccceeEEECCCCCEEEEEec--------------CCCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEE
Confidence 1122333333 3 45777641 12578888877665 5443322 222 222234444 34788
Q ss_pred EEcCCCCCccCeEEEEeCC--CCceEee
Q 042957 251 SSGDCLKAWKGHIESYDGE--LNMWDEV 276 (371)
Q Consensus 251 v~GG~~~~~~~~~~~yd~~--~~~W~~~ 276 (371)
++.-..+ .+.+|+.. +..++.+
T Consensus 208 v~~e~s~----~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 208 VVNELSN----TVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp EEETTTT----EEEEEEEETTTTEEEEE
T ss_pred EecCCCC----cEEEEeecccCCceeEE
Confidence 8865433 46666655 6777776
No 89
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.50 E-value=7.7 Score=37.51 Aligned_cols=189 Identities=11% Similarity=-0.024 Sum_probs=96.4
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECC-EEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGD-SVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
..++.+|+.+++...+...+.. .......-++ +|++....+ ...++|.+|..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~------~~~~~~SPDG~~la~~~~~~---------------------g~~~Iy~~d~~ 278 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM------TFAPRFSPDGRKVVMSLSQG---------------------GNTDIYTMDLR 278 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc------ccCcEECCCCCEEEEEEecC---------------------CCceEEEEECC
Confidence 5689999998887777654421 1111222344 454443221 13578999998
Q ss_pred CCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCE-EEE
Q 042957 117 SNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGK-IHV 194 (371)
Q Consensus 117 ~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv 194 (371)
+++-+++...+.. .......-++ +|+...... ....++++|..+...+++.... .........-+++ |++
T Consensus 279 ~~~~~~Lt~~~~~-~~~~~~spDG~~i~f~s~~~------g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 279 SGTTTRLTDSPAI-DTSPSYSPDGSQIVFESDRS------GSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAF 350 (435)
T ss_pred CCceEEccCCCCc-cCceeEcCCCCEEEEEECCC------CCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEE
Confidence 8887776543321 1122223344 454433222 1357899998887777765322 1222222233444 444
Q ss_pred EecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECC-EEEEEcCCCCCc-cCeEEEEeCCCCc
Q 042957 195 VSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDN-RLFSSGDCLKAW-KGHIESYDGELNM 272 (371)
Q Consensus 195 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~-~~~~~~yd~~~~~ 272 (371)
.. .... ...+..+|+.+.....+..-. ....... .-++ .|+......... ...++++|+....
T Consensus 351 ~~-~~~~-----------~~~i~~~d~~~~~~~~lt~~~--~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 351 TK-QGGG-----------QFSIGVMKPDGSGERILTSGF--LVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EE-cCCC-----------ceEEEEEECCCCceEeccCCC--CCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 43 2211 146888998776655543211 1111112 2244 444443222111 1469999998876
Q ss_pred eEee
Q 042957 273 WDEV 276 (371)
Q Consensus 273 W~~~ 276 (371)
-+.+
T Consensus 416 ~~~l 419 (435)
T PRK05137 416 EREV 419 (435)
T ss_pred eEEc
Confidence 6666
No 90
>PTZ00421 coronin; Provisional
Probab=93.49 E-value=8.5 Score=37.95 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=52.5
Q ss_pred CEEEEEcCCCCCCCCCCCceEEEEeCCCCceE-eCCCCCCCceeeEEE-EECCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWT-PLPNMSTLRYKCVGV-TWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 140 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
+.+++.|+.+ ..+.+||..+.+-. .+....... ..++ ..++.+++.|+.+ ..+.
T Consensus 138 ~~iLaSgs~D--------gtVrIWDl~tg~~~~~l~~h~~~V--~sla~spdG~lLatgs~D--------------g~Ir 193 (493)
T PTZ00421 138 MNVLASAGAD--------MVVNVWDVERGKAVEVIKCHSDQI--TSLEWNLDGSLLCTTSKD--------------KKLN 193 (493)
T ss_pred CCEEEEEeCC--------CEEEEEECCCCeEEEEEcCCCCce--EEEEEECCCCEEEEecCC--------------CEEE
Confidence 4577777765 35888998876432 111111111 1122 2367777777643 4688
Q ss_pred EEECCCCceeeccccccCCCCCCeEEE-ECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 218 VYDTQAGKWDLVARMWQLDIPPNQIVE-VDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 218 ~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
+||+++++-........... ...++. .++..++..|........+.+||+.+
T Consensus 194 IwD~rsg~~v~tl~~H~~~~-~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 194 IIDPRDGTIVSSVEAHASAK-SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEECCCCcEEEEEecCCCCc-ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 99998775221111111100 011222 23334444443332334699999865
No 91
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.42 E-value=4.8 Score=34.89 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEE-CCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTW-QGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
+++.+++++.+ ..+.+||..+.+....-..... .-..+... ++++++.++.. ..+.
T Consensus 62 ~~~~l~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~--------------~~i~ 118 (289)
T cd00200 62 DGTYLASGSSD--------KTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRD--------------KTIK 118 (289)
T ss_pred CCCEEEEEcCC--------CeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCC--------------CeEE
Confidence 44466666653 4688888876522111111111 11122222 34666666522 4688
Q ss_pred EEECCCCceeeccccccCCCCCCeEEEEC-CEEEEEcCCCCCccCeEEEEeCCCC
Q 042957 218 VYDTQAGKWDLVARMWQLDIPPNQIVEVD-NRLFSSGDCLKAWKGHIESYDGELN 271 (371)
Q Consensus 218 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~yd~~~~ 271 (371)
.||+.+.+-...-. ........+.... +++++.+...+ .+.+||+.+.
T Consensus 119 ~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~----~i~i~d~~~~ 167 (289)
T cd00200 119 VWDVETGKCLTTLR--GHTDWVNSVAFSPDGTFVASSSQDG----TIKLWDLRTG 167 (289)
T ss_pred EEECCCcEEEEEec--cCCCcEEEEEEcCcCCEEEEEcCCC----cEEEEEcccc
Confidence 89988554322211 1111112333333 45555544233 4999998753
No 92
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.20 E-value=6.9 Score=36.08 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=84.7
Q ss_pred cceeEEeCCC-CceeccCCCCcccccccccceEEEEE-C-CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE
Q 042957 38 NWLASYNPSN-NTWSHVSHIPDLLENHVLKGFSIVSL-G-DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN 114 (371)
Q Consensus 38 ~~~~~yd~~~-~~W~~~~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 114 (371)
+.+..||..+ .++..+...+... ..+.++.. + +.||+.+.. ...+..|+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~-----~~~~l~~spd~~~lyv~~~~-----------------------~~~i~~~~ 63 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPG-----QVQPMVISPDKRHLYVGVRP-----------------------EFRVLSYR 63 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCC-----CCccEEECCCCCEEEEEECC-----------------------CCcEEEEE
Confidence 4578888854 4566555443211 11234333 3 457775432 24465666
Q ss_pred CC-CCeeeecCCCCCCCC-CeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCc-e-EeCCCCCCCceeeEEEEE-
Q 042957 115 VK-SNEWTRCAPLSVPRY-DFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQ-W-TPLPNMSTLRYKCVGVTW- 188 (371)
Q Consensus 115 ~~-~~~W~~~~~~~~~r~-~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~-W-~~~~~~p~~~~~~~~~~~- 188 (371)
+. .++++.+...+.+.. .+.+..-++ .||+.. .. ...+.+||..++. . +.+..++.....+.++..
T Consensus 64 ~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p 135 (330)
T PRK11028 64 IADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP 135 (330)
T ss_pred ECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC
Confidence 64 455655543332222 222222344 566653 21 2467778775431 1 122222221222333332
Q ss_pred CC-EEEEEecccCCCCCCCCccccccCeeEEEECCCC-ceeecc----ccccCCCCCCeEEEE--CCEEEEEcCCCCCcc
Q 042957 189 QG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG-KWDLVA----RMWQLDIPPNQIVEV--DNRLFSSGDCLKAWK 260 (371)
Q Consensus 189 ~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~-~W~~~~----~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~ 260 (371)
++ .+|+..- ..+.+.+||+.+. ...... ..+.. .....++.. +..+|+.... .
T Consensus 136 ~g~~l~v~~~--------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~----~ 196 (330)
T PRK11028 136 DNRTLWVPCL--------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNEL----N 196 (330)
T ss_pred CCCEEEEeeC--------------CCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecC----C
Confidence 33 5666552 1257899998763 222110 11111 122234443 3367776432 2
Q ss_pred CeEEEEeCC--CCceEee
Q 042957 261 GHIESYDGE--LNMWDEV 276 (371)
Q Consensus 261 ~~~~~yd~~--~~~W~~~ 276 (371)
+.+.+||+. +++.+.+
T Consensus 197 ~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CEEEEEEEeCCCCCEEEE
Confidence 358888876 4455544
No 93
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.09 E-value=8.9 Score=37.07 Aligned_cols=148 Identities=5% Similarity=-0.096 Sum_probs=77.4
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 187 (371)
..++.+|+.+++.+.+...+..........-+.+|++....++ ...++.+|..+...+++...+..... ....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~s 298 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYS 298 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCCCccCc-eeEc
Confidence 6799999999888777655432222222222345554433321 35799999998887777543321111 2223
Q ss_pred ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEe
Q 042957 188 WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYD 267 (371)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd 267 (371)
-+++-.++..... ....++.+|..+...+.+.... .........--++.|++...... ...++++|
T Consensus 299 pDG~~i~f~s~~~-----------g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~--~~~i~~~d 364 (435)
T PRK05137 299 PDGSQIVFESDRS-----------GSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG--QFSIGVMK 364 (435)
T ss_pred CCCCEEEEEECCC-----------CCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC--ceEEEEEE
Confidence 3444333332211 1146888998887766664321 11111111122445544432111 23689999
Q ss_pred CCCCceEee
Q 042957 268 GELNMWDEV 276 (371)
Q Consensus 268 ~~~~~W~~~ 276 (371)
+.....+.+
T Consensus 365 ~~~~~~~~l 373 (435)
T PRK05137 365 PDGSGERIL 373 (435)
T ss_pred CCCCceEec
Confidence 887766665
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.87 E-value=9.5 Score=36.77 Aligned_cols=148 Identities=11% Similarity=0.019 Sum_probs=84.0
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEE
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVG 185 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~ 185 (371)
..++|++|..+++=+.+...+. ........-++ +|++.-... ...+++.+|..+..++++...+. ......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~------g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~ 283 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPK------GQPDIYLYDTNTKTLTQITNYPG-IDVNGN 283 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccC------CCcEEEEEECCCCcEEEcccCCC-ccCccE
Confidence 3578999988877666654221 11122223344 565543332 13689999999999998865543 111122
Q ss_pred EEE-CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCC----cc
Q 042957 186 VTW-QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKA----WK 260 (371)
Q Consensus 186 ~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~----~~ 260 (371)
..- +.+|+......+ ...++.+|+.+++.+++..... . .....--++.|......... ..
T Consensus 284 ~SPDG~~I~F~Sdr~g------------~~~Iy~~dl~~g~~~rlt~~g~--~-~~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 284 FVEDDKRIVFVSDRLG------------YPNIFMKKLNSGSVEQVVFHGK--N-NSSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred ECCCCCEEEEEECCCC------------CceEEEEECCCCCeEeCccCCC--c-CceECCCCCEEEEEEcCCCcccCCCC
Confidence 223 446776654321 2478999999988876643211 1 11222234445444332211 12
Q ss_pred CeEEEEeCCCCceEeec
Q 042957 261 GHIESYDGELNMWDEVN 277 (371)
Q Consensus 261 ~~~~~yd~~~~~W~~~~ 277 (371)
.+++++|+++..++.+.
T Consensus 349 ~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 349 FNLYLISTNSDYIRRLT 365 (419)
T ss_pred cEEEEEECCCCCeEECC
Confidence 47999999999999883
No 95
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.86 E-value=5.8 Score=34.32 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=27.0
Q ss_pred CeeEEEECCCCceeeccccccCCCCCCeEEEEC-CEEEEEcCCCCCccCeEEEEeCCCC
Q 042957 214 SSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVD-NRLFSSGDCLKAWKGHIESYDGELN 271 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~yd~~~~ 271 (371)
..+.+||..+.+....-. .. ......+.... +.+++.++... .+.+||..+.
T Consensus 199 ~~i~i~d~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~----~i~i~~~~~~ 251 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLR-GH-ENGVNSVAFSPDGYLLASGSEDG----TIRVWDLRTG 251 (289)
T ss_pred CcEEEEECCCCceecchh-hc-CCceEEEEEcCCCcEEEEEcCCC----cEEEEEcCCc
Confidence 467889988754332211 11 11122344443 45555554233 4999998763
No 96
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.68 E-value=7.9 Score=35.41 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=68.9
Q ss_pred CceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCC-C
Q 042957 48 NTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAP-L 126 (371)
Q Consensus 48 ~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~ 126 (371)
.+|+.+..-...+ ......++...++..||+|-. .-+++-.-...+|++++. .
T Consensus 47 ~tW~~~~~~~~~~--~~~~l~~I~f~~~~g~ivG~~------------------------g~ll~T~DgG~tW~~v~l~~ 100 (302)
T PF14870_consen 47 KTWQPVSLDLDNP--FDYHLNSISFDGNEGWIVGEP------------------------GLLLHTTDGGKTWERVPLSS 100 (302)
T ss_dssp SS-EE-----S-------EEEEEEEETTEEEEEEET------------------------TEEEEESSTTSS-EE----T
T ss_pred ccccccccCCCcc--ceeeEEEEEecCCceEEEcCC------------------------ceEEEecCCCCCcEEeecCC
Confidence 5698876332211 011233445567899998632 223443335668999863 2
Q ss_pred CCCCCCeeEEE-ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCC
Q 042957 127 SVPRYDFACTV-CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSD 205 (371)
Q Consensus 127 ~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~ 205 (371)
+.|-..+.+.. -++.+.++|.. ..+++-.-.-.+|+.+..-..+-.......-++++++++...
T Consensus 101 ~lpgs~~~i~~l~~~~~~l~~~~---------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G------ 165 (302)
T PF14870_consen 101 KLPGSPFGITALGDGSAELAGDR---------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG------ 165 (302)
T ss_dssp T-SS-EEEEEEEETTEEEEEETT-----------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS------
T ss_pred CCCCCeeEEEEcCCCcEEEEcCC---------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc------
Confidence 33434444444 45677777543 346666666779998754333222222223466766666322
Q ss_pred CCccccccCeeEEEECCCCceeeccccccCCCCCCeEEE-ECCEEEEEc
Q 042957 206 GSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVE-VDNRLFSSG 253 (371)
Q Consensus 206 ~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~G 253 (371)
+-....|+-...|+........+ . ..|.. -++.|+++.
T Consensus 166 --------~~~~s~~~G~~~w~~~~r~~~~r-i-q~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 166 --------NFYSSWDPGQTTWQPHNRNSSRR-I-QSMGFSPDGNLWMLA 204 (302)
T ss_dssp --------SEEEEE-TT-SS-EEEE--SSS--E-EEEEE-TTS-EEEEE
T ss_pred --------cEEEEecCCCccceEEccCccce-e-hhceecCCCCEEEEe
Confidence 33456788888899887554332 2 23433 356777764
No 97
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.66 E-value=7.1 Score=34.84 Aligned_cols=225 Identities=15% Similarity=0.131 Sum_probs=123.0
Q ss_pred ceeEEeCCCCceeccCCCCcccccccccceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 39 WLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 39 ~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
.+=..||.+.+=.+.+ +++.- +-|.+++- ++..+|.-+- ..+-++|+++
T Consensus 84 aiGhLdP~tGev~~yp-Lg~Ga-----~Phgiv~gpdg~~Witd~~------------------------~aI~R~dpkt 133 (353)
T COG4257 84 AIGHLDPATGEVETYP-LGSGA-----SPHGIVVGPDGSAWITDTG------------------------LAIGRLDPKT 133 (353)
T ss_pred cceecCCCCCceEEEe-cCCCC-----CCceEEECCCCCeeEecCc------------------------ceeEEecCcc
Confidence 3556777777766654 33222 22344443 5667776322 2678888887
Q ss_pred CeeeecCCC-CCCCCCeeEEEEC--CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCcee-eEEEEECCEEE
Q 042957 118 NEWTRCAPL-SVPRYDFACTVCD--NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYK-CVGVTWQGKIH 193 (371)
Q Consensus 118 ~~W~~~~~~-~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~-~~~~~~~~~ly 193 (371)
..-++.+-. ..+-.+.-.++++ +.|+..|-... .-++|+.++.-+..+. |.+..- -.++.-++.+|
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~---------yGrLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvw 203 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA---------YGRLDPARNVISVFPA-PQGGGPYGICATPDGSVW 203 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCccEEEeecccc---------ceecCcccCceeeecc-CCCCCCcceEECCCCcEE
Confidence 776665422 2233444455554 57777654321 1255666654443332 333322 23345688999
Q ss_pred EEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCC-CCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 194 VVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDI-PPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 194 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
+..=. -+.+-..|+.+..=+.+........ .+...+.-.+++++.-- ....++.||+.+..
T Consensus 204 yasla--------------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw----g~g~l~rfdPs~~s 265 (353)
T COG4257 204 YASLA--------------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW----GTGSLHRFDPSVTS 265 (353)
T ss_pred EEecc--------------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEecc----CCceeeEeCccccc
Confidence 87521 1567778888775455543322111 11122334566777621 12359999999999
Q ss_pred eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccccccccccCc
Q 042957 273 WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEP 351 (371)
Q Consensus 273 W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~ 351 (371)
|.+- +||.. .+|-...-|--.+++++.- .....+..||+++. +++.++.
T Consensus 266 W~ey------pLPgs-------------~arpys~rVD~~grVW~se---------a~agai~rfdpeta--~ftv~p~ 314 (353)
T COG4257 266 WIEY------PLPGS-------------KARPYSMRVDRHGRVWLSE---------ADAGAIGRFDPETA--RFTVLPI 314 (353)
T ss_pred ceee------eCCCC-------------CCCcceeeeccCCcEEeec---------cccCceeecCcccc--eEEEecC
Confidence 9997 23221 2344444444456777632 12346778999987 8887754
No 98
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.57 E-value=13 Score=37.68 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=104.0
Q ss_pred CccCCCceEEEEeeecCCCCCCCccccceeEEeCCCCceeccCCCCcccccccccceEEEEEC--CEEEEEcCcccccCC
Q 042957 12 TERNPSGHLILASFCLREPGPRSNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLG--DSVYIIGGLLCHKER 89 (371)
Q Consensus 12 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~ 89 (371)
...+....+|+.|+..|. +..|....-.-...-.+.. ..-..++++ +.-..||+..
T Consensus 271 a~fH~~t~~lvvgFssG~----------f~LyelP~f~lih~LSis~-------~~I~t~~~N~tGDWiA~g~~k----- 328 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGE----------FGLYELPDFNLIHSLSISD-------QKILTVSFNSTGDWIAFGCSK----- 328 (893)
T ss_pred eeccCCceEEEEEecCCe----------eEEEecCCceEEEEeeccc-------ceeeEEEecccCCEEEEcCCc-----
Confidence 344566667777777654 4455544333222222221 111344444 6677777653
Q ss_pred CCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc
Q 042957 90 AHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ 169 (371)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 169 (371)
+..+.+|+-++.+...-..-...|.....-.-++.+++.|+.++ .+-+||..+.-
T Consensus 329 -----------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg--------KVKvWn~~Sgf 383 (893)
T KOG0291|consen 329 -----------------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG--------KVKVWNTQSGF 383 (893)
T ss_pred -----------------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC--------cEEEEeccCce
Confidence 56777776655554333332233444444445888999999873 57778877654
Q ss_pred eEe-CCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc-eeeccccccCCCCCCeEEEEC-
Q 042957 170 WTP-LPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK-WDLVARMWQLDIPPNQIVEVD- 246 (371)
Q Consensus 170 W~~-~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~~- 246 (371)
+-. ...-..+..... ....++..+....+ .+|-.+|+..-+ .+... -|.+ .+.++++++
T Consensus 384 C~vTFteHts~Vt~v~-f~~~g~~llssSLD--------------GtVRAwDlkRYrNfRTft-~P~p--~QfscvavD~ 445 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQ-FTARGNVLLSSSLD--------------GTVRAWDLKRYRNFRTFT-SPEP--IQFSCVAVDP 445 (893)
T ss_pred EEEEeccCCCceEEEE-EEecCCEEEEeecC--------------CeEEeeeecccceeeeec-CCCc--eeeeEEEEcC
Confidence 322 222112222211 13344444444322 356677776542 22222 1222 233555666
Q ss_pred -CEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 247 -NRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 247 -~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
|.|.+.|+.+.- +|++++.++.+--.+
T Consensus 446 sGelV~AG~~d~F---~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 446 SGELVCAGAQDSF---EIFVWSVQTGQLLDI 473 (893)
T ss_pred CCCEEEeeccceE---EEEEEEeecCeeeeh
Confidence 889988886553 588888888765554
No 99
>PRK13684 Ycf48-like protein; Provisional
Probab=92.48 E-value=9.1 Score=35.63 Aligned_cols=136 Identities=9% Similarity=0.075 Sum_probs=67.1
Q ss_pred eEEEEECCCCeeeecCCCCCCCCCeeEEEEC-CEEEEEcCCCCCCCCCCCceEEE-EeCCCCceEeCCCCCCCceeeEEE
Q 042957 109 WVLRYNVKSNEWTRCAPLSVPRYDFACTVCD-NKIYVAGGKSNLFSAKGTASAEV-YHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 109 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
.+++=+-.-.+|+.+..... -.-+.+.... +.++++|... .++. .|....+|+.+.. +..+.-..++
T Consensus 153 ~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~~G---------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~ 221 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSSRG---------NFYSTWEPGQTAWTPHQR-NSSRRLQSMG 221 (334)
T ss_pred eEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeCCc---------eEEEEcCCCCCeEEEeeC-CCcccceeee
Confidence 45555555679998764332 2233444443 4444444332 2222 2444567988854 3333333333
Q ss_pred -EECCEEEEEecccCCCCCCCCccccccCeeEEEE-C-CCCceeecccccc-CCCCCCeEEEE-CCEEEEEcCCCCCccC
Q 042957 187 -TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYD-T-QAGKWDLVARMWQ-LDIPPNQIVEV-DNRLFSSGDCLKAWKG 261 (371)
Q Consensus 187 -~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd-~-~t~~W~~~~~~~~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~ 261 (371)
.-+++++++|... ...+. . .-.+|+.+..... .......++.. ++.+++.|....
T Consensus 222 ~~~~g~~~~vg~~G----------------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~---- 281 (334)
T PRK13684 222 FQPDGNLWMLARGG----------------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGT---- 281 (334)
T ss_pred EcCCCCEEEEecCC----------------EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCe----
Confidence 3467888887321 12232 2 2347987642211 11111233333 667888875422
Q ss_pred eEEEEeCCCCceEee
Q 042957 262 HIESYDGELNMWDEV 276 (371)
Q Consensus 262 ~~~~yd~~~~~W~~~ 276 (371)
+..-.-.-.+|+.+
T Consensus 282 -v~~S~d~G~tW~~~ 295 (334)
T PRK13684 282 -LLVSKDGGKTWEKD 295 (334)
T ss_pred -EEEeCCCCCCCeEC
Confidence 44333445689987
No 100
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.43 E-value=12 Score=36.87 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=56.6
Q ss_pred cceeEEeCCCCc--eeccCCCCcccccccccceEEEEEC-CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEE
Q 042957 38 NWLASYNPSNNT--WSHVSHIPDLLENHVLKGFSIVSLG-DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYN 114 (371)
Q Consensus 38 ~~~~~yd~~~~~--W~~~~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 114 (371)
..++++|+.+.+ |+.-...+......+-....++..+ +.||+... ...++.+|
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------------------~g~v~AlD 126 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------------------DGRLVALD 126 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------------------CCeEEEEE
Confidence 458999998766 8764332200000000111234456 78887532 35688888
Q ss_pred CCCCe--eeecCCCCC-CC--CCeeEEEECCEEEEEcCCCCCC-CCCCCceEEEEeCCCC--ceEe
Q 042957 115 VKSNE--WTRCAPLSV-PR--YDFACTVCDNKIYVAGGKSNLF-SAKGTASAEVYHPELD--QWTP 172 (371)
Q Consensus 115 ~~~~~--W~~~~~~~~-~r--~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~yd~~t~--~W~~ 172 (371)
..+.+ |+.-..... .. ...+.++.++.+|+ |...... .......++.+|..+. .|+.
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 88764 765432221 11 12334455666665 4322110 0012357899999875 5865
No 101
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.43 E-value=12 Score=36.87 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=65.1
Q ss_pred EEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCe--eeecCCCCC----C-CCCeeEEEEC-C
Q 042957 69 SIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNE--WTRCAPLSV----P-RYDFACTVCD-N 140 (371)
Q Consensus 69 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~----~-r~~~~~~~~~-~ 140 (371)
+-++.++.||+.... ..++.+|..+.+ |+.-...+. + .....++..+ +
T Consensus 56 sPvv~~g~vy~~~~~------------------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (488)
T cd00216 56 TPLVVDGDMYFTTSH------------------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR 111 (488)
T ss_pred CCEEECCEEEEeCCC------------------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC
Confidence 345668999987432 457888887664 865332220 1 1112234556 7
Q ss_pred EEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCCCCC-Cc--eeeEEEEECCEEEEEecccCCCCCCCCccccccCe
Q 042957 141 KIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPNMST-LR--YKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSS 215 (371)
Q Consensus 141 ~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~-~~--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 215 (371)
+||+... ...+..+|.++. .|+.-...+. .. ...+.++.++.+|+ |......... .....
T Consensus 112 ~V~v~~~---------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~-----~~~g~ 176 (488)
T cd00216 112 KVFFGTF---------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFAC-----GVRGA 176 (488)
T ss_pred eEEEecC---------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccC-----CCCcE
Confidence 8887532 246889998865 5876433221 11 12233456666664 4222111000 01257
Q ss_pred eEEEECCCCc--eeec
Q 042957 216 AEVYDTQAGK--WDLV 229 (371)
Q Consensus 216 v~~yd~~t~~--W~~~ 229 (371)
++++|.++.+ |+.-
T Consensus 177 v~alD~~TG~~~W~~~ 192 (488)
T cd00216 177 LRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCceeeEee
Confidence 8999998764 7643
No 102
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.22 E-value=11 Score=36.17 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=57.7
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEEEECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCC
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLD 236 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~ 236 (371)
..++++|+.+++-+.+...+..... ....-++ +|++.....+ ...++.+|+.+...+.+.......
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g------------~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG------------NPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC------------CceEEEEECCCCCeEEcccCCCCc
Confidence 5799999999888777654422111 1222344 4544332111 147899999998887765322111
Q ss_pred CCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 237 IPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 237 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
. .....--+++|++..... ....++.+|+.+..++.+
T Consensus 290 ~-~~~~spDg~~i~f~s~~~--g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 290 T-EPFWGKDGRTLYFTSDRG--GKPQIYKVNVNGGRAERV 326 (430)
T ss_pred C-CeEECCCCCEEEEEECCC--CCceEEEEECCCCCEEEe
Confidence 1 011111234565553221 124699999999888877
No 103
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.11 E-value=3.4 Score=41.14 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=69.5
Q ss_pred EEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCC--ceeeccccccCCC-------CCCeEEEECCEEEEEcCC
Q 042957 185 GVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG--KWDLVARMWQLDI-------PPNQIVEVDNRLFSSGDC 255 (371)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~-------~~~~~~~~~~~iyv~GG~ 255 (371)
-++.++.||+... ...++++|.++. .|+.-...+.... ...++++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~---------------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTS---------------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL- 128 (527)
T ss_pred CEEECCEEEEECC---------------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-
Confidence 3567999998652 246889998876 4875443221110 11245677888887432
Q ss_pred CCCccCeEEEEeCCCCc--eEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeE
Q 042957 256 LKAWKGHIESYDGELNM--WDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSM 333 (371)
Q Consensus 256 ~~~~~~~~~~yd~~~~~--W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 333 (371)
. ..++++|.++.+ |+.-. .++... .....+-++.+++||+-....+. .....
T Consensus 129 d----g~l~ALDa~TGk~~W~~~~----~~~~~~--------------~~~tssP~v~~g~Vivg~~~~~~----~~~G~ 182 (527)
T TIGR03075 129 D----ARLVALDAKTGKVVWSKKN----GDYKAG--------------YTITAAPLVVKGKVITGISGGEF----GVRGY 182 (527)
T ss_pred C----CEEEEEECCCCCEEeeccc----cccccc--------------ccccCCcEEECCEEEEeeccccc----CCCcE
Confidence 2 259999998754 76531 111100 01222334567877663211111 12347
Q ss_pred EEEeeccccccccccc
Q 042957 334 VHIFDTAAKSDAWRSF 349 (371)
Q Consensus 334 v~~~d~~~~~~~W~~~ 349 (371)
|..||.++....|+.-
T Consensus 183 v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 183 VTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEECCCCceeEecc
Confidence 8899999887778754
No 104
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=92.00 E-value=8.4 Score=36.47 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=98.9
Q ss_pred cccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCce-EeCCCCCCCce
Q 042957 103 YDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQW-TPLPNMSTLRY 181 (371)
Q Consensus 103 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~~~ 181 (371)
+.+..++++.+|-..+-=-++..+...-.-+++-..++.+|++- .+-+.-+++.|+++-.= +.+..+..+-+
T Consensus 401 ~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVT-------frqtDPlfviDlsNPenPkvlGeLKIPGf 473 (603)
T COG4880 401 EDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVT-------FRQTDPLFVIDLSNPENPKVLGELKIPGF 473 (603)
T ss_pred CCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEE-------EeccCceEEEEcCCCCCCceeEEEecCCc
Confidence 44667899999987776666665554444566777889999983 33355677777765321 22333443333
Q ss_pred eeEEEEEC-CEEEEEecccCCCCCCCCccccccCeeEEEECCCCce------eeccccccCCCCCCeEEEECC--EEEEE
Q 042957 182 KCVGVTWQ-GKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW------DLVARMWQLDIPPNQIVEVDN--RLFSS 252 (371)
Q Consensus 182 ~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W------~~~~~~~~~~~~~~~~~~~~~--~iyv~ 252 (371)
..-.-.++ +.+.=+|-.. .+ -.+..||...-.= -.+....++....|.+..++. +|+.+
T Consensus 474 S~YLHpigen~~lGvG~~~-g~-----------vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFl 541 (603)
T COG4880 474 SEYLHPIGENRLLGVGAYQ-GG-----------VKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFL 541 (603)
T ss_pred hhhccccCCCcEEEeeccc-CC-----------ceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEe
Confidence 22222233 3444444333 22 2566676643210 111222233333344444544 35554
Q ss_pred cCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceee
Q 042957 253 GDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMS 332 (371)
Q Consensus 253 GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 332 (371)
--+.+ -++|-.+.+ -+-++... ..+ ....+..++|.+|++||.
T Consensus 542 Pay~~-----gyif~iedg-~kl~k~~e-~k~-------------------na~RA~fi~dylY~vg~~----------- 584 (603)
T COG4880 542 PAYLG-----GYIFFIEDG-SKLRKRAE-RKL-------------------NADRAFFIKDYLYLVGGN----------- 584 (603)
T ss_pred cccCc-----cEEEEEecC-ceeeehhh-hcc-------------------cceeeEEecceEEEeccc-----------
Confidence 32222 234444444 12221000 111 223466789999999986
Q ss_pred EEEEeecccccccccccCccc
Q 042957 333 MVHIFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 333 ~v~~~d~~~~~~~W~~~~~~p 353 (371)
.++++|-. .|+.++.+.
T Consensus 585 ev~~lden----swe~Vge~~ 601 (603)
T COG4880 585 EVWKLDEN----SWEVVGEAV 601 (603)
T ss_pred eeEEeccc----hHhhhhhee
Confidence 55677665 799987653
No 105
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=91.89 E-value=7.1 Score=33.10 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=74.9
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeC----CCCCCCceeeEEEEE-CCEEEEEecccCCCCCCC
Q 042957 134 ACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPL----PNMSTLRYKCVGVTW-QGKIHVVSGFAQRADSDG 206 (371)
Q Consensus 134 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~----~~~p~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~ 206 (371)
+++...+++|+|-|. .+++++.... .-+.+ +.+|.. ..++.... ++++|+|-|
T Consensus 11 A~~~~~g~~y~FkG~----------~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg--------- 70 (194)
T cd00094 11 AVTTLRGELYFFKGR----------YFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKG--------- 70 (194)
T ss_pred eEEEeCCEEEEEeCC----------EEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECC---------
Confidence 344456899999664 3566654311 11222 123322 22232222 388999976
Q ss_pred CccccccCeeEEEECCCCcee---eccccccCC--CCCCeEEEE--CCEEEEEcCCCCCccCeEEEEeCCCCceEeecCc
Q 042957 207 SVHFTERSSAEVYDTQAGKWD---LVARMWQLD--IPPNQIVEV--DNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGS 279 (371)
Q Consensus 207 ~~~~~~~~~v~~yd~~t~~W~---~~~~~~~~~--~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~ 279 (371)
+..++||..+..+. .+.....+. ....++... ++++|++-|. ..++||..+++...
T Consensus 71 -------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~------~y~ry~~~~~~v~~---- 133 (194)
T cd00094 71 -------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD------KYWRYDEKTQKMDP---- 133 (194)
T ss_pred -------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC------EEEEEeCCCccccC----
Confidence 45666766542221 111111111 112234334 5799999772 58899987655421
Q ss_pred ccccCCCCcccCCCCCCCCCCcee-eeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccc
Q 042957 280 CLQTLSSPVSTSSTNTEDWPPIQR-LYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAK 342 (371)
Q Consensus 280 ~~~~l~~~~~~~~~~~~~~~p~~r-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~ 342 (371)
..|..+ .+.|+-.+. .-.++...++++|++-|. ..+.||..+.
T Consensus 134 ---~yP~~i------~~~w~g~p~~idaa~~~~~~~~yfF~g~-----------~y~~~d~~~~ 177 (194)
T cd00094 134 ---GYPKLI------ETDFPGVPDKVDAAFRWLDGYYYFFKGD-----------QYWRFDPRSK 177 (194)
T ss_pred ---CCCcch------hhcCCCcCCCcceeEEeCCCcEEEEECC-----------EEEEEeCccc
Confidence 111110 011221112 223333334899998764 5678888765
No 106
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.67 E-value=9.2 Score=33.95 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=79.2
Q ss_pred cceEEEEECCCCeee---ecCCCC---------CCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCC----Cce
Q 042957 107 LAWVLRYNVKSNEWT---RCAPLS---------VPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPEL----DQW 170 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~---~~~~~~---------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~W 170 (371)
.+.+-+||+.+++=. .++... .+....-.++-.+-|+++=...... ..-.+-..|+.+ .+|
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~---g~ivvskld~~tL~v~~tw 164 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN---GNIVVSKLDPETLSVEQTW 164 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC---CcEEEEeeCcccCceEEEE
Confidence 678999999988644 443221 1122344555667788875543211 112345566665 356
Q ss_pred EeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccC-CCCCCeEEEE---C
Q 042957 171 TPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQL-DIPPNQIVEV---D 246 (371)
Q Consensus 171 ~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-~~~~~~~~~~---~ 246 (371)
..- .+.. ....+.++-|.||++........ .-.+.||+.+++=+.+. ++-. +....++..+ +
T Consensus 165 ~T~--~~k~-~~~naFmvCGvLY~~~s~~~~~~----------~I~yafDt~t~~~~~~~-i~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 165 NTS--YPKR-SAGNAFMVCGVLYATDSYDTRDT----------EIFYAFDTYTGKEEDVS-IPFPNPYGNISMLSYNPRD 230 (250)
T ss_pred Eec--cCch-hhcceeeEeeEEEEEEECCCCCc----------EEEEEEECCCCceecee-eeeccccCceEeeeECCCC
Confidence 643 3332 23345678889999987665431 45688999988765443 3322 2222334443 6
Q ss_pred CEEEEEcCCCCCccCeEEEEeCC
Q 042957 247 NRLFSSGDCLKAWKGHIESYDGE 269 (371)
Q Consensus 247 ~~iyv~GG~~~~~~~~~~~yd~~ 269 (371)
++||+... ..+..|++.
T Consensus 231 k~LY~wd~------G~~v~Y~v~ 247 (250)
T PF02191_consen 231 KKLYAWDN------GYQVTYDVR 247 (250)
T ss_pred CeEEEEEC------CeEEEEEEE
Confidence 78998832 246666653
No 107
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.59 E-value=2.3 Score=33.38 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=54.4
Q ss_pred EEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccc--ccCCCCCCeEEEECCEEEEEcCCCCC--ccC
Q 042957 186 VTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARM--WQLDIPPNQIVEVDNRLFSSGDCLKA--WKG 261 (371)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~--~~~~~~~~~~~~~~~~iyv~GG~~~~--~~~ 261 (371)
+.+||-||-..-.... ....|.+||.++.+|+.+..+ +........++.++|+|-++.-.... ..-
T Consensus 2 icinGvly~~a~~~~~----------~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~ 71 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDS----------DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSI 71 (129)
T ss_pred EEECcEEEeEEEECCC----------CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceE
Confidence 3568888877755111 236899999999999888654 22223334688889999887644322 224
Q ss_pred eEEEE-eCCCCceEee
Q 042957 262 HIESY-DGELNMWDEV 276 (371)
Q Consensus 262 ~~~~y-d~~~~~W~~~ 276 (371)
++|+. |.++.+|.+.
T Consensus 72 ~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 72 DIWVLEDYEKQEWSKK 87 (129)
T ss_pred EEEEeeccccceEEEE
Confidence 67777 5667889976
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.50 E-value=14 Score=35.67 Aligned_cols=145 Identities=10% Similarity=-0.073 Sum_probs=74.4
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
..+|.+|..+++=..+...+. ........-++ +|++....++ ...++.+|..+...+++..-.. .......
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~w 291 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQSSG-IDTEPFF 291 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCCCCC-CCcCeEE
Confidence 568999998876555544331 11222222344 5555433321 3578899988777666643221 1111223
Q ss_pred EECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEE-CCEEEEEcCCCCCccCeEE
Q 042957 187 TWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV-DNRLFSSGDCLKAWKGHIE 264 (371)
Q Consensus 187 ~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 264 (371)
.-+++ |+......+ ...++.+|..+...+.+.... .........- ++.|+........ ..++
T Consensus 292 SpDG~~l~f~s~~~g------------~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~--~~I~ 355 (427)
T PRK02889 292 SPDGRSIYFTSDRGG------------APQIYRMPASGGAAQRVTFTG--SYNTSPRISPDGKLLAYISRVGGA--FKLY 355 (427)
T ss_pred cCCCCEEEEEecCCC------------CcEEEEEECCCCceEEEecCC--CCcCceEECCCCCEEEEEEccCCc--EEEE
Confidence 33554 544332111 136788888777766654211 1111111222 4445544332221 2699
Q ss_pred EEeCCCCceEee
Q 042957 265 SYDGELNMWDEV 276 (371)
Q Consensus 265 ~yd~~~~~W~~~ 276 (371)
++|+.+...+.+
T Consensus 356 v~d~~~g~~~~l 367 (427)
T PRK02889 356 VQDLATGQVTAL 367 (427)
T ss_pred EEECCCCCeEEc
Confidence 999998887777
No 109
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.07 E-value=16 Score=35.61 Aligned_cols=137 Identities=11% Similarity=0.112 Sum_probs=70.0
Q ss_pred ceEEEEECCCC-ee-eecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEE
Q 042957 108 AWVLRYNVKSN-EW-TRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVG 185 (371)
Q Consensus 108 ~~v~~yd~~~~-~W-~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~ 185 (371)
..+..+|...+ .- +.+....... ...++...+.+++.|+.+ ..|.++|..+.+-...-..-........
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D--------~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD--------GTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCC--------CcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 45667776333 22 2233333333 222233355889998886 4689999998554433221222222222
Q ss_pred EEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCcee---eccccccCCCCCCeEEEECCEEEEEcCCCCCccCe
Q 042957 186 VTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWD---LVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGH 262 (371)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~---~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 262 (371)
..-++.+++.+..+ ..+.+||..+..-. .+.....+. ....+....+..|++-+..+. .
T Consensus 296 f~~d~~~l~s~s~d--------------~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~---~ 357 (456)
T KOG0266|consen 296 FSPDGNLLVSASYD--------------GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDR---T 357 (456)
T ss_pred ECCCCCEEEEcCCC--------------ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCC---e
Confidence 34467777777432 46889999988743 333222221 112333334444444443221 4
Q ss_pred EEEEeCCCC
Q 042957 263 IESYDGELN 271 (371)
Q Consensus 263 ~~~yd~~~~ 271 (371)
+..||+...
T Consensus 358 ~~~w~l~~~ 366 (456)
T KOG0266|consen 358 LKLWDLRSG 366 (456)
T ss_pred EEEEEccCC
Confidence 777777653
No 110
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=90.85 E-value=11 Score=33.15 Aligned_cols=153 Identities=10% Similarity=-0.006 Sum_probs=86.1
Q ss_pred cceEEEEEC----CCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc---eEeCCCCC--
Q 042957 107 LAWVLRYNV----KSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ---WTPLPNMS-- 177 (371)
Q Consensus 107 ~~~v~~yd~----~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~---W~~~~~~p-- 177 (371)
...+..|.. ....|...=.+|.+-.+.+-+++++.+|.-.+. ...+-.||..+.. |..++.+-
T Consensus 41 ~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~--------t~~ivky~l~~~~~~~~~~lp~a~y~ 112 (249)
T KOG3545|consen 41 GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAG--------TRNIIKYDLETRTVAGSAALPYAGYH 112 (249)
T ss_pred CceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccC--------CcceEEEEeecceeeeeeeccccccC
Confidence 344555543 333455555677777888889999999877543 3568889888743 34443211
Q ss_pred -------CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEE
Q 042957 178 -------TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLF 250 (371)
Q Consensus 178 -------~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iy 250 (371)
.+....-.++...-|+++=-..+... .-.+...|+.+-.-+.......++.....+.++-+.||
T Consensus 113 ~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g---------~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iCGvLY 183 (249)
T KOG3545|consen 113 NPSPYYWGGHSDIDLAVDENGLWVIYATPENAG---------TIVLSKLDPETLEVERTWNTTLPKRSAGNAFMICGVLY 183 (249)
T ss_pred CCcccccCCCccccceecccceeEEecccccCC---------cEEeeccCHHHhheeeeeccccCCCCcCceEEEeeeeE
Confidence 11122333455555777654433332 12346778765443333332222222234666778899
Q ss_pred EEcCCCCCccCeEEEEeCCCCceEee
Q 042957 251 SSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 251 v~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
++-........--++||..+++=..+
T Consensus 184 ~v~S~~~~~~~i~yaydt~~~~~~~~ 209 (249)
T KOG3545|consen 184 VVHSYNCTHTQISYAYDTTTGTQERI 209 (249)
T ss_pred EEeccccCCceEEEEEEcCCCceecc
Confidence 88665443333347999998877554
No 111
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.41 E-value=10 Score=37.73 Aligned_cols=118 Identities=14% Similarity=0.232 Sum_probs=67.6
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCCCCCCc--------eeeEEEEECCEEEEEecccCCCC
Q 042957 134 ACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPNMSTLR--------YKCVGVTWQGKIHVVSGFAQRAD 203 (371)
Q Consensus 134 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~--------~~~~~~~~~~~lyv~GG~~~~~~ 203 (371)
+-++.++.||+.... ..++.+|..+. .|+.-...+... .....++.+++||+..
T Consensus 64 tPvv~~g~vyv~s~~---------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t------- 127 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY---------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT------- 127 (527)
T ss_pred CCEEECCEEEEECCC---------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------
Confidence 445679999986442 25888998875 587654332111 1123456788888643
Q ss_pred CCCCccccccCeeEEEECCCCc--eeeccccccCC-CCCCeEEEECCEEEEEcCC-CCCccCeEEEEeCCCCc--eEe
Q 042957 204 SDGSVHFTERSSAEVYDTQAGK--WDLVARMWQLD-IPPNQIVEVDNRLFSSGDC-LKAWKGHIESYDGELNM--WDE 275 (371)
Q Consensus 204 ~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~-~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~yd~~~~~--W~~ 275 (371)
....+.++|.++.+ |+.-..-.... ....+.++.+++||+-... .......+..||.++.+ |+.
T Consensus 128 --------~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 128 --------LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred --------CCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 12468999998875 76432111111 1112345668887764321 11123469999998865 664
No 112
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.32 E-value=14 Score=33.76 Aligned_cols=180 Identities=13% Similarity=0.193 Sum_probs=79.1
Q ss_pred eEEeCCCCceeccCCCCcccccccccceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCe
Q 042957 41 ASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNE 119 (371)
Q Consensus 41 ~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 119 (371)
++-.=.-.+|++++.... .+...+.+..+ ++.+++++.. ..+++=.-.-.+
T Consensus 84 l~T~DgG~tW~~v~l~~~----lpgs~~~i~~l~~~~~~l~~~~------------------------G~iy~T~DgG~t 135 (302)
T PF14870_consen 84 LHTTDGGKTWERVPLSSK----LPGSPFGITALGDGSAELAGDR------------------------GAIYRTTDGGKT 135 (302)
T ss_dssp EEESSTTSS-EE----TT-----SS-EEEEEEEETTEEEEEETT--------------------------EEEESSTTSS
T ss_pred EEecCCCCCcEEeecCCC----CCCCeeEEEEcCCCcEEEEcCC------------------------CcEEEeCCCCCC
Confidence 333334577999863211 11233455555 4677777543 346665556678
Q ss_pred eeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEeccc
Q 042957 120 WTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFA 199 (371)
Q Consensus 120 W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~ 199 (371)
|+.+..-...-..-....-++++++++... +-.-..|+-...|+........|.......-++.|+++. +.
T Consensus 136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G--------~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 136 WQAVVSETSGSINDITRSSDGRYVAVSSRG--------NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp EEEEE-S----EEEEEE-TTS-EEEEETTS--------SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred eeEcccCCcceeEeEEECCCCcEEEEECcc--------cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC
Confidence 988754222111112222367777776553 234456888888998865545555555556678898876 22
Q ss_pred CCCCCCCCccccccCeeEEEE--CCCCceeeccccccCCCCC-CeEEEE-CCEEEEEcCCCCCccCeEEEEeCCCCceEe
Q 042957 200 QRADSDGSVHFTERSSAEVYD--TQAGKWDLVARMWQLDIPP-NQIVEV-DNRLFSSGDCLKAWKGHIESYDGELNMWDE 275 (371)
Q Consensus 200 ~~~~~~~~~~~~~~~~v~~yd--~~t~~W~~~~~~~~~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~ 275 (371)
+ .+..=+ ....+|.+-.......... ..++.. ++++++.||... +++=.=.-++|++
T Consensus 207 g--------------~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----l~~S~DgGktW~~ 267 (302)
T PF14870_consen 207 G--------------QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-----LLVSTDGGKTWQK 267 (302)
T ss_dssp T--------------EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT------EEEESSTTSS-EE
T ss_pred c--------------EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-----EEEeCCCCccceE
Confidence 1 233333 3345677632222122211 123332 678999988643 4443344578999
Q ss_pred e
Q 042957 276 V 276 (371)
Q Consensus 276 ~ 276 (371)
.
T Consensus 268 ~ 268 (302)
T PF14870_consen 268 D 268 (302)
T ss_dssp -
T ss_pred C
Confidence 8
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.16 E-value=19 Score=34.84 Aligned_cols=146 Identities=10% Similarity=-0.053 Sum_probs=77.3
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
..++.+|..+++-+.+...+..-.. ....-++ +|++.....+ ...++++|..+.+.+++..-...... ...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~~~~~~~-~~w 294 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRSNNTE-PTW 294 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCCCCCcCc-eEE
Confidence 5688999988876666554332121 2222244 5655533221 24699999999888777543322111 112
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECC-EEEEEcCCCCCccCeEEE
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDN-RLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~ 265 (371)
.-+++.+++...... ...++.+|+.+..-+.+..... ........-++ .|++...... ...+++
T Consensus 295 SPDG~~I~f~s~~~g-----------~~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~ 359 (429)
T PRK03629 295 FPDSQNLAYTSDQAG-----------RPQVYKVNINGGAPQRITWEGS--QNQDADVSSDGKFMVMVSSNGG--QQHIAK 359 (429)
T ss_pred CCCCCEEEEEeCCCC-----------CceEEEEECCCCCeEEeecCCC--CccCEEECCCCCEEEEEEccCC--CceEEE
Confidence 334543333322211 1368888988876665532111 11111222244 4444433222 236999
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
+|++++.++.+
T Consensus 360 ~dl~~g~~~~L 370 (429)
T PRK03629 360 QDLATGGVQVL 370 (429)
T ss_pred EECCCCCeEEe
Confidence 99999998888
No 114
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.92 E-value=18 Score=34.41 Aligned_cols=147 Identities=7% Similarity=-0.045 Sum_probs=79.0
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEE-ECC-EEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVS-LGD-SVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
..++.+|..+++-..+...... ..+.+. -++ .|++..... ...+++.+|.
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-------~~~~~~spDg~~l~~~~~~~---------------------~~~~i~~~d~ 265 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-------NGAPAFSPDGSKLAVSLSKD---------------------GNPDIYVMDL 265 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-------ccceEECCCCCEEEEEECCC---------------------CCccEEEEEC
Confidence 4688999988776555443311 112222 243 455543321 1357899999
Q ss_pred CCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEE
Q 042957 116 KSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHV 194 (371)
Q Consensus 116 ~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv 194 (371)
.+++.+++.......... ....++ +|++...... ...++.+|..+..++.+..-... .......-+++.++
T Consensus 266 ~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~ 337 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIA 337 (417)
T ss_pred CCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCC------CceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEE
Confidence 888877765433221111 122244 5555433321 24789999988888766432111 11122233556555
Q ss_pred EecccCCCCCCCCccccccCeeEEEECCCCceeeccc
Q 042957 195 VSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVAR 231 (371)
Q Consensus 195 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 231 (371)
+...... ...++.+|+.+..++.+..
T Consensus 338 ~~~~~~~-----------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 338 FVHREGG-----------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEccCC-----------ceEEEEEeCCCCCeEEccC
Confidence 5543321 1478999999877766643
No 115
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.63 E-value=9 Score=35.28 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=73.6
Q ss_pred cceeEEeCCCC-----ceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEE
Q 042957 38 NWLASYNPSNN-----TWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLR 112 (371)
Q Consensus 38 ~~~~~yd~~~~-----~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 112 (371)
..++.|+.... +.+.+..... .-.-.+++.+++++.+.-|. .+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~-----~g~V~ai~~~~~~lv~~~g~-------------------------~l~v 111 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV-----KGPVTAICSFNGRLVVAVGN-------------------------KLYV 111 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE-----SS-EEEEEEETTEEEEEETT-------------------------EEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEee-----cCcceEhhhhCCEEEEeecC-------------------------EEEE
Confidence 66888988885 5555543321 12345788889986666553 4777
Q ss_pred EECCCCe-eeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEE-CC
Q 042957 113 YNVKSNE-WTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTW-QG 190 (371)
Q Consensus 113 yd~~~~~-W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~ 190 (371)
|+...++ +.....+..+-.-..+.++++.|++---.. .-.+..|+....+-..++.-..++.-.++..+ ++
T Consensus 112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE 184 (321)
T ss_dssp EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS
T ss_pred EEccCcccchhhheecceEEEEEEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC
Confidence 8777777 887776665556667777888777652222 23455667766666666654556665555555 55
Q ss_pred EEEEEec
Q 042957 191 KIHVVSG 197 (371)
Q Consensus 191 ~lyv~GG 197 (371)
. .++++
T Consensus 185 ~-~~i~~ 190 (321)
T PF03178_consen 185 D-TIIVG 190 (321)
T ss_dssp S-EEEEE
T ss_pred c-EEEEE
Confidence 5 44443
No 116
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.15 E-value=28 Score=35.47 Aligned_cols=82 Identities=10% Similarity=0.021 Sum_probs=46.7
Q ss_pred eeEEeCCCCceeccCCCCcccccccccceEEEEEC--CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 40 LASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLG--DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 40 ~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
+-++|...-+-.+--..| .|..++.++++ +.|.+.|+.+ .-++++.+.++
T Consensus 416 VRAwDlkRYrNfRTft~P------~p~QfscvavD~sGelV~AG~~d----------------------~F~IfvWS~qT 467 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSP------EPIQFSCVAVDPSGELVCAGAQD----------------------SFEIFVWSVQT 467 (893)
T ss_pred EEeeeecccceeeeecCC------CceeeeEEEEcCCCCEEEeeccc----------------------eEEEEEEEeec
Confidence 556666554433222223 24667777777 8899998875 56788888888
Q ss_pred CeeeecCCCCCCCCCeeEEEECCEEEEEcCCC
Q 042957 118 NEWTRCAPLSVPRYDFACTVCDNKIYVAGGKS 149 (371)
Q Consensus 118 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~ 149 (371)
++-..+-.-.......-+....+.+++-|-++
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 87544322111111112233345567777776
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=89.07 E-value=22 Score=34.27 Aligned_cols=147 Identities=7% Similarity=-0.096 Sum_probs=73.0
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
..++|..|.....=+.+..... ........-+++.+++-.... ....++++|..+++-+.+...+...... ..
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~-~~~~p~wSPDG~~la~~s~~~-----g~~~i~i~dl~~G~~~~l~~~~~~~~~~-~~ 250 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFES-----GRSALVIQTLANGAVRQVASFPRHNGAP-AF 250 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCC-ceeeeEEcCCCCEEEEEEecC-----CCcEEEEEECCCCCeEEccCCCCCcCCe-EE
Confidence 5678888876543233322111 112222233443333321111 1256899999888777776554432222 22
Q ss_pred EECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCE-EEEEcCCCCCccCeEE
Q 042957 187 TWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNR-LFSSGDCLKAWKGHIE 264 (371)
Q Consensus 187 ~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~ 264 (371)
.-++ +|++.....+ ...++.+|+++.+.+.+..-.... ......-+++ |+....... ...++
T Consensus 251 SPDG~~La~~~~~~g------------~~~I~~~d~~tg~~~~lt~~~~~~--~~~~wSPDG~~I~f~s~~~g--~~~Iy 314 (429)
T PRK03629 251 SPDGSKLAFALSKTG------------SLNLYVMDLASGQIRQVTDGRSNN--TEPTWFPDSQNLAYTSDQAG--RPQVY 314 (429)
T ss_pred CCCCCEEEEEEcCCC------------CcEEEEEECCCCCEEEccCCCCCc--CceEECCCCCEEEEEeCCCC--CceEE
Confidence 3344 4555432221 136899999988777664332111 1111122444 444332211 23688
Q ss_pred EEeCCCCceEee
Q 042957 265 SYDGELNMWDEV 276 (371)
Q Consensus 265 ~yd~~~~~W~~~ 276 (371)
.+|+.+..-+.+
T Consensus 315 ~~d~~~g~~~~l 326 (429)
T PRK03629 315 KVNINGGAPQRI 326 (429)
T ss_pred EEECCCCCeEEe
Confidence 899988776666
No 118
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.61 E-value=23 Score=33.83 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=46.6
Q ss_pred eCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce-----eeccccccCCCC
Q 042957 164 HPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW-----DLVARMWQLDIP 238 (371)
Q Consensus 164 d~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W-----~~~~~~~~~~~~ 238 (371)
|.-...|+.+......+........++.++++|... .+..-+.....| ..+... .....
T Consensus 266 d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G---------------~l~~S~d~G~~~~~~~f~~~~~~-~~~~~ 329 (398)
T PLN00033 266 EPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG---------------GLYVSKGTGLTEEDFDFEEADIK-SRGFG 329 (398)
T ss_pred CCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc---------------eEEEecCCCCcccccceeecccC-CCCcc
Confidence 333334888864333333233335678899887321 222223333334 433321 11111
Q ss_pred CCeEEEE-CCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 239 PNQIVEV-DNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 239 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
...++.. ++.+++.|...- +.+-.-.-++|+..
T Consensus 330 l~~v~~~~d~~~~a~G~~G~-----v~~s~D~G~tW~~~ 363 (398)
T PLN00033 330 ILDVGYRSKKEAWAAGGSGI-----LLRSTDGGKSWKRD 363 (398)
T ss_pred eEEEEEcCCCcEEEEECCCc-----EEEeCCCCcceeEc
Confidence 2233333 668888876432 56656667889997
No 119
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.46 E-value=21 Score=33.23 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=75.1
Q ss_pred cceEEEEECCCCe--eeecCCCCCC-CC--CeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCC--CCceEeC---CC
Q 042957 107 LAWVLRYNVKSNE--WTRCAPLSVP-RY--DFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPE--LDQWTPL---PN 175 (371)
Q Consensus 107 ~~~v~~yd~~~~~--W~~~~~~~~~-r~--~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~--t~~W~~~---~~ 175 (371)
...+++|+..... .........+ -. .|.+..- +..+|++.-.. +.+.+|+.. +.+++.+ +.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--------~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--------NTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT--------TEEEEEEEETTTTEEEEEEEEES
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC--------CcEEEEeecccCCceeEEEEeee
Confidence 4568888876665 5443322211 12 2333332 46899985543 455555544 6665543 34
Q ss_pred CCCC---c-eeeEEEEE--CCEEEEEecccCCCCCCCCccccccCeeEEEEC--CCCceeeccccccCCCCCCeEEE--E
Q 042957 176 MSTL---R-YKCVGVTW--QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDT--QAGKWDLVARMWQLDIPPNQIVE--V 245 (371)
Q Consensus 176 ~p~~---~-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~--~ 245 (371)
+|.. . ..+.++.. +..||+.... .++|.+|++ .+++.+.+...+.....+..++. -
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~--------------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRG--------------SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECT--------------TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ccccccccCCceeEEEecCCCEEEEEecc--------------CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 4332 1 22333333 3457876632 256777776 55677777666553332234444 3
Q ss_pred CCEEEEEcCCCCCccCeEEEE--eCCCCceEee
Q 042957 246 DNRLFSSGDCLKAWKGHIESY--DGELNMWDEV 276 (371)
Q Consensus 246 ~~~iyv~GG~~~~~~~~~~~y--d~~~~~W~~~ 276 (371)
++.||+.....+ .+.+| |.++..++.+
T Consensus 303 g~~l~Va~~~s~----~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 303 GRYLYVANQDSN----TVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SSEEEEEETTTT----EEEEEEEETTTTEEEEE
T ss_pred CCEEEEEecCCC----eEEEEEEeCCCCcEEEe
Confidence 455666543322 35555 6678888887
No 120
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=88.21 E-value=19 Score=34.61 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=42.4
Q ss_pred ccceEEEEECCCCeeeecCC-C---CCCCCCeeEEEECCEEEEE----cCCCCCCCCCCCceEEEEeCCCCceEeCCCCC
Q 042957 106 VLAWVLRYNVKSNEWTRCAP-L---SVPRYDFACTVCDNKIYVA----GGKSNLFSAKGTASAEVYHPELDQWTPLPNMS 177 (371)
Q Consensus 106 ~~~~v~~yd~~~~~W~~~~~-~---~~~r~~~~~~~~~~~lyv~----GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p 177 (371)
+..++|.|+..+.+=.++.. + ..||... +++-.+| -|.. ....++++++.+.++-+++.-.-
T Consensus 57 ~~DdlWe~slk~g~~~ritS~lGVvnn~kf~p-----dGrkvaf~rv~~~ss-----~~taDly~v~~e~Ge~kRiTyfG 126 (668)
T COG4946 57 CCDDLWEYSLKDGKPLRITSGLGVVNNPKFSP-----DGRKVAFSRVMLGSS-----LQTADLYVVPSEDGEAKRITYFG 126 (668)
T ss_pred echHHHHhhhccCCeeEEecccceeccccCCC-----CCcEEEEEEEEecCC-----CccccEEEEeCCCCcEEEEEEec
Confidence 35678888887776555432 2 2333321 2221222 1211 12467899988888877765442
Q ss_pred CCceeeEEEEECCEEEEEec
Q 042957 178 TLRYKCVGVTWQGKIHVVSG 197 (371)
Q Consensus 178 ~~~~~~~~~~~~~~lyv~GG 197 (371)
.+....+.-.-+++|.|.--
T Consensus 127 r~fT~VaG~~~dg~iiV~TD 146 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTD 146 (668)
T ss_pred cccceeeccCCCCCEEEEec
Confidence 22222233345677776653
No 121
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.18 E-value=23 Score=33.31 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=76.8
Q ss_pred eEEEEECCCCe--eeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCC--CceEeCCCCCCCceeeE
Q 042957 109 WVLRYNVKSNE--WTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPEL--DQWTPLPNMSTLRYKCV 184 (371)
Q Consensus 109 ~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~~~~~~ 184 (371)
.++.+|+.+.+ |+.................+++||+-... ..+++||..+ ..|+.-.... .+....
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~---------g~~y~ld~~~G~~~W~~~~~~~-~~~~~~ 148 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD---------GKLYALDASTGTLVWSRNVGGS-PYYASP 148 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc---------ceEEEEECCCCcEEEEEecCCC-eEEecC
Confidence 68899998876 86543321111222233337887765332 1689999854 4687654332 344444
Q ss_pred EEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCC--ceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCe
Q 042957 185 GVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG--KWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGH 262 (371)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 262 (371)
.+..++.+|+.. . ...++++|..+. .|+.-...+.........+..++.+|+-... . ...
T Consensus 149 ~v~~~~~v~~~s----~-----------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~--~-~~~ 210 (370)
T COG1520 149 PVVGDGTVYVGT----D-----------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG--Y-DGI 210 (370)
T ss_pred cEEcCcEEEEec----C-----------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC--C-cce
Confidence 456677777664 1 146788888755 5774433211111112233556666665322 1 235
Q ss_pred EEEEeCCCCc--eEe
Q 042957 263 IESYDGELNM--WDE 275 (371)
Q Consensus 263 ~~~yd~~~~~--W~~ 275 (371)
++.+|+++.+ |..
T Consensus 211 ~~a~~~~~G~~~w~~ 225 (370)
T COG1520 211 LYALNAEDGTLKWSQ 225 (370)
T ss_pred EEEEEccCCcEeeee
Confidence 9999997754 764
No 122
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=87.58 E-value=23 Score=32.58 Aligned_cols=194 Identities=19% Similarity=0.282 Sum_probs=87.0
Q ss_pred EEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC-CCCeeeecCCC---C--CCC---CCeeEEEEC
Q 042957 69 SIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV-KSNEWTRCAPL---S--VPR---YDFACTVCD 139 (371)
Q Consensus 69 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-~~~~W~~~~~~---~--~~r---~~~~~~~~~ 139 (371)
+++.+++.|+.|..-.+.... ......-+..+.. ...+|+..... . ..| ..+.+++-+
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~-------------~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkg 69 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSN-------------DSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKG 69 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S--------------SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEET
T ss_pred CEEEECCEEEEEEEEEEccCC-------------CCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecc
Confidence 788999999999765422111 1112233344443 44578664211 1 112 345666779
Q ss_pred CEEEEEcCCCCCCCCCCCceEEEEe--CCCCceEeCCCCCCCcee---------eEEEEE-CCEE-EEEecccCCCCCCC
Q 042957 140 NKIYVAGGKSNLFSAKGTASAEVYH--PELDQWTPLPNMSTLRYK---------CVGVTW-QGKI-HVVSGFAQRADSDG 206 (371)
Q Consensus 140 ~~lyv~GG~~~~~~~~~~~~~~~yd--~~t~~W~~~~~~p~~~~~---------~~~~~~-~~~l-yv~GG~~~~~~~~~ 206 (371)
++||++-|.-........-.+..+. ....+|.....++..... -+.++. ++.| |=+-+......
T Consensus 70 n~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~--- 146 (310)
T PF13859_consen 70 NKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGD--- 146 (310)
T ss_dssp TEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT-----
T ss_pred eeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCcc---
Confidence 9999976643211111222333332 223369876655432111 111222 3332 22223333221
Q ss_pred CccccccCeeEEEECC-CCceeeccccccCCCCCCeEEEE-CCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccC
Q 042957 207 SVHFTERSSAEVYDTQ-AGKWDLVARMWQLDIPPNQIVEV-DNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTL 284 (371)
Q Consensus 207 ~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l 284 (371)
..-++.+|... ..+|+.-..++...+..+.++-. +++|+++.-+... ...++.=.=.-.+|++.- ..|
T Consensus 147 -----~~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g-~rrVYeS~DmG~tWtea~----gtl 216 (310)
T PF13859_consen 147 -----GTVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG-RRRVYESGDMGTTWTEAL----GTL 216 (310)
T ss_dssp ------EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS----EEEESSTTSS-EE-T----TTT
T ss_pred -----ceEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc-eEEEEEEcccceehhhcc----Ccc
Confidence 02467788877 67899887776555444578888 8899999766443 113444333447899942 677
Q ss_pred CCCc
Q 042957 285 SSPV 288 (371)
Q Consensus 285 ~~~~ 288 (371)
+..|
T Consensus 217 srVw 220 (310)
T PF13859_consen 217 SRVW 220 (310)
T ss_dssp TT--
T ss_pred ceee
Confidence 7665
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.51 E-value=19 Score=31.47 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=62.6
Q ss_pred ceEEEEECCCCeeee-cCCCCCCCCCeeEEEEC--CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeE
Q 042957 108 AWVLRYNVKSNEWTR-CAPLSVPRYDFACTVCD--NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCV 184 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~ 184 (371)
..+..+|..+++=.+ ... -...--++.++ ..+.+.|+.+ +++.+||..+.+.+.+.-+...+....
T Consensus 81 k~v~vwDV~TGkv~Rr~rg---H~aqVNtV~fNeesSVv~SgsfD--------~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRG---HLAQVNTVRFNEESSVVASGSFD--------SSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred ceEEEEEcccCeeeeeccc---ccceeeEEEecCcceEEEecccc--------ceeEEEEcccCCCCccchhhhhcCcee
Confidence 568899998876321 110 01112233343 4566667765 578999999998888887777787777
Q ss_pred EEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce
Q 042957 185 GVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW 226 (371)
Q Consensus 185 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W 226 (371)
.+.+.+...|.|... ..+-.||++.++-
T Consensus 150 Si~v~~heIvaGS~D--------------GtvRtydiR~G~l 177 (307)
T KOG0316|consen 150 SIDVAEHEIVAGSVD--------------GTVRTYDIRKGTL 177 (307)
T ss_pred EEEecccEEEeeccC--------------CcEEEEEeeccee
Confidence 777888887777544 3567799887753
No 124
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=87.34 E-value=24 Score=32.49 Aligned_cols=10 Identities=0% Similarity=-0.011 Sum_probs=8.0
Q ss_pred ceEEEEeCCC
Q 042957 158 ASAEVYHPEL 167 (371)
Q Consensus 158 ~~~~~yd~~t 167 (371)
+.+.+||..+
T Consensus 148 ~~v~v~d~~~ 157 (330)
T PRK11028 148 DRIRLFTLSD 157 (330)
T ss_pred CEEEEEEECC
Confidence 5789999876
No 125
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=86.92 E-value=5 Score=39.25 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=54.8
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCce-Ee------CCCCCCC
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQW-TP------LPNMSTL 179 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W-~~------~~~~p~~ 179 (371)
..+||++|...+.|-.--....+--++....--..|+++|+.+ ..++.||+.+.+= .. +...|..
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~--------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED--------GVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEecccC--------ceEEEecchhhhhheeeecccccCCCccc
Confidence 3579999999999854221111222222222235688899875 4689999986532 11 2233332
Q ss_pred cee--eEEEE-ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc
Q 042957 180 RYK--CVGVT-WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK 225 (371)
Q Consensus 180 ~~~--~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~ 225 (371)
-.. .++.. -++-|-+.-|... ..+++||+.+.+
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~-------------G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTST-------------GSVLIYDLRASK 261 (703)
T ss_pred cccCcceEEEecCCceeEEeeccC-------------CcEEEEEcccCC
Confidence 221 22223 3446666555443 468999998765
No 126
>PTZ00420 coronin; Provisional
Probab=86.86 E-value=37 Score=34.17 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=52.3
Q ss_pred CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE-EECCEEEEEecccCCCCCCCCccccccCeeEE
Q 042957 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV-TWQGKIHVVSGFAQRADSDGSVHFTERSSAEV 218 (371)
Q Consensus 140 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~ 218 (371)
..+++.||.+ ..+.+||..+.+=.. .+.....-..+. ..++.+++.++.. ..+.+
T Consensus 138 ~~iLaSgS~D--------gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D--------------~~IrI 193 (568)
T PTZ00420 138 YYIMCSSGFD--------SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG--------------KHMHI 193 (568)
T ss_pred CeEEEEEeCC--------CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC--------------CEEEE
Confidence 3455666765 358889988764111 111111111222 2367777766532 46899
Q ss_pred EECCCCceeeccccccCCCCCCe-EEE-----ECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 219 YDTQAGKWDLVARMWQLDIPPNQ-IVE-----VDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 219 yd~~t~~W~~~~~~~~~~~~~~~-~~~-----~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
||+++.+- +..+..-...... ++. .++..++.+|........+.+||+.+
T Consensus 194 wD~Rsg~~--i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 194 IDPRKQEI--ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EECCCCcE--EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 99988642 2222110000001 111 24455566565443334699999875
No 127
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.56 E-value=21 Score=31.14 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=101.6
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEEC--CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEEC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLG--DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNV 115 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 115 (371)
..++.||..+++=.+ -... | -.....+..+ ..|.+-|+.+ ..+-.+|.
T Consensus 81 k~v~vwDV~TGkv~R--r~rg----H-~aqVNtV~fNeesSVv~SgsfD-----------------------~s~r~wDC 130 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDR--RFRG----H-LAQVNTVRFNEESSVVASGSFD-----------------------SSVRLWDC 130 (307)
T ss_pred ceEEEEEcccCeeee--eccc----c-cceeeEEEecCcceEEEecccc-----------------------ceeEEEEc
Confidence 568899998877222 1110 1 1122345554 3566667664 66888899
Q ss_pred CCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEE
Q 042957 116 KSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVV 195 (371)
Q Consensus 116 ~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~ 195 (371)
.++..+.+..+-..+.+-..+.+.+..++.|..++ .+-.||+..++-.. --+-.+.. .....-++.-.++
T Consensus 131 RS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG--------tvRtydiR~G~l~s-Dy~g~pit-~vs~s~d~nc~La 200 (307)
T KOG0316|consen 131 RSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG--------TVRTYDIRKGTLSS-DYFGHPIT-SVSFSKDGNCSLA 200 (307)
T ss_pred ccCCCCccchhhhhcCceeEEEecccEEEeeccCC--------cEEEEEeecceeeh-hhcCCcce-eEEecCCCCEEEE
Confidence 99998888888888888888888888888887763 47788886653211 01112221 1122335555556
Q ss_pred ecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 196 SGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 196 GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
|-.+ ..+-..|-+|++-...-.=-....+.--++..+..-.|++|.... .++.||+.+..
T Consensus 201 ~~l~--------------stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 201 SSLD--------------STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVDET 260 (307)
T ss_pred eecc--------------ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc---eEEEEEeccce
Confidence 6322 345566777765432211000011111244455556677765433 48888887653
No 128
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.54 E-value=54 Score=35.80 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCC----------CC---CCceeeEEEEE-C-CEEEEEecccCCCC
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPN----------MS---TLRYKCVGVTW-Q-GKIHVVSGFAQRAD 203 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~----------~p---~~~~~~~~~~~-~-~~lyv~GG~~~~~~ 203 (371)
++.||+.... ...+++||..+.....+.. .. ....-..+++. + +.|||....+
T Consensus 694 ~g~LyVad~~--------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n---- 761 (1057)
T PLN02919 694 NEKVYIAMAG--------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES---- 761 (1057)
T ss_pred CCeEEEEECC--------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC----
Confidence 6788887433 2468888887765543210 00 00111122322 3 4599887422
Q ss_pred CCCCccccccCeeEEEECCCCceeeccc-----------ccc-------C-CCCCCeEEE-ECCEEEEEcCCCCCccCeE
Q 042957 204 SDGSVHFTERSSAEVYDTQAGKWDLVAR-----------MWQ-------L-DIPPNQIVE-VDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 204 ~~~~~~~~~~~~v~~yd~~t~~W~~~~~-----------~~~-------~-~~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 263 (371)
+.|.+||+.++....+.. ... . ...+.++++ -++.|||....+. .|
T Consensus 762 ----------~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~----rI 827 (1057)
T PLN02919 762 ----------SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH----KI 827 (1057)
T ss_pred ----------CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC----EE
Confidence 578899988765332210 000 0 001123443 3567998865443 59
Q ss_pred EEEeCCCCceEeec
Q 042957 264 ESYDGELNMWDEVN 277 (371)
Q Consensus 264 ~~yd~~~~~W~~~~ 277 (371)
.+||++++....+.
T Consensus 828 rviD~~tg~v~tia 841 (1057)
T PLN02919 828 KKLDPATKRVTTLA 841 (1057)
T ss_pred EEEECCCCeEEEEe
Confidence 99999998887773
No 129
>PRK02889 tolB translocation protein TolB; Provisional
Probab=86.38 E-value=33 Score=33.11 Aligned_cols=147 Identities=7% Similarity=-0.059 Sum_probs=72.2
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
...+|..|.....-+.+.....+... ....-+++.+++..... ....++++|..+.+=..+...+.... ....
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~-----~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~ 247 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFES-----KKPVVYVHDLATGRRRVVANFKGSNS-APAW 247 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccC-----CCcEEEEEECCCCCEEEeecCCCCcc-ceEE
Confidence 35688888755444444322222112 22223444333332221 13569999998876666654442221 2222
Q ss_pred EECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECC-EEEEEcCCCCCccCeEE
Q 042957 187 TWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDN-RLFSSGDCLKAWKGHIE 264 (371)
Q Consensus 187 ~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~ 264 (371)
.-++ +|++.....+ ...++.+|..+...+.+..-... . ......-++ +|+...... ....++
T Consensus 248 SPDG~~la~~~~~~g------------~~~Iy~~d~~~~~~~~lt~~~~~-~-~~~~wSpDG~~l~f~s~~~--g~~~Iy 311 (427)
T PRK02889 248 SPDGRTLAVALSRDG------------NSQIYTVNADGSGLRRLTQSSGI-D-TEPFFSPDGRSIYFTSDRG--GAPQIY 311 (427)
T ss_pred CCCCCEEEEEEccCC------------CceEEEEECCCCCcEECCCCCCC-C-cCeEEcCCCCEEEEEecCC--CCcEEE
Confidence 3344 4554433221 14688889887776655432111 1 111222244 455443221 124688
Q ss_pred EEeCCCCceEee
Q 042957 265 SYDGELNMWDEV 276 (371)
Q Consensus 265 ~yd~~~~~W~~~ 276 (371)
.+|..+...+.+
T Consensus 312 ~~~~~~g~~~~l 323 (427)
T PRK02889 312 RMPASGGAAQRV 323 (427)
T ss_pred EEECCCCceEEE
Confidence 888888777776
No 130
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.03 E-value=20 Score=33.27 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=69.7
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
..++.||..+++- +..++.. -..+.+.+- ++.+|+..-+.... ...+...-+..||..
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~--------------~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTG-----FLGNVALSPDGKTIYVAETFYSRG--------------TRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEET--------------TEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcE--EEEeecc-----cCCceeECCCCCEEEEEEEEEecc--------------ccccceeEEEEEecC
Confidence 5799999988873 3333321 122333333 35788775443111 245667789999999
Q ss_pred CCeeee---cCCCC----CC-CCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEE
Q 042957 117 SNEWTR---CAPLS----VP-RYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTW 188 (371)
Q Consensus 117 ~~~W~~---~~~~~----~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~ 188 (371)
+-+-.. +|+-+ .+ +..+++..-+..+||+ ......++.+.|.+.++.-. .++.+-|.+..-.-
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~-------N~TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~ 146 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ-------NFTPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSG 146 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE-------EESSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEE
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEE-------ccCCCCeEEEEECCCCceee--eecCCCEEEEEecC
Confidence 885432 33211 11 1222222235567777 44567899999999987643 33333343333333
Q ss_pred CCEEEEEec
Q 042957 189 QGKIHVVSG 197 (371)
Q Consensus 189 ~~~lyv~GG 197 (371)
++..+.++|
T Consensus 147 ~~~F~~lC~ 155 (342)
T PF06433_consen 147 NRGFSMLCG 155 (342)
T ss_dssp TTEEEEEET
T ss_pred CCceEEEec
Confidence 455555543
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.64 E-value=51 Score=34.69 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCc--eEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCee
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQ--WTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSA 216 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v 216 (371)
++.+++.|+.+ ..+.+||..+.+ ...+..-.... ..+...++..++.++.+ ..+
T Consensus 629 ~g~~latgs~d--------g~I~iwD~~~~~~~~~~~~~h~~~V--~~v~f~~~~~lvs~s~D--------------~~i 684 (793)
T PLN00181 629 SGRSLAFGSAD--------HKVYYYDLRNPKLPLCTMIGHSKTV--SYVRFVDSSTLVSSSTD--------------NTL 684 (793)
T ss_pred CCCEEEEEeCC--------CeEEEEECCCCCccceEecCCCCCE--EEEEEeCCCEEEEEECC--------------CEE
Confidence 46777887765 368899987542 11221111111 12223355666666533 467
Q ss_pred EEEECCCC----ceeeccccccCCCCCCeEE-EECCEEEEEcCCCCCccCeEEEEeCCCC
Q 042957 217 EVYDTQAG----KWDLVARMWQLDIPPNQIV-EVDNRLFSSGDCLKAWKGHIESYDGELN 271 (371)
Q Consensus 217 ~~yd~~t~----~W~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~yd~~~~ 271 (371)
.+||+.+. .|..+..+..-......++ ..++.+++.|+.++ .+.+|+....
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~----~v~iw~~~~~ 740 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN----EVFVYHKAFP 740 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC----EEEEEECCCC
Confidence 78888643 2333322211111111122 23566777776554 4888886543
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.56 E-value=36 Score=32.83 Aligned_cols=138 Identities=12% Similarity=0.004 Sum_probs=67.6
Q ss_pred eEEEEECCCCeeeecCCCCCCCCCeeEEEECCE-EEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE
Q 042957 109 WVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNK-IYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187 (371)
Q Consensus 109 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 187 (371)
.++.+|..+++-+.+...+. ........-+++ |++....++ ..+++.+|..+...+++..-... .......
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred EEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 57888887766555544332 112222233554 444332321 24688899888777666432211 1112223
Q ss_pred ECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEE
Q 042957 188 WQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESY 266 (371)
Q Consensus 188 ~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~y 266 (371)
-+++ |+......+ ...++.+|..+..-+.+.. .. ......--++.|++.++ ..+.++
T Consensus 301 pDG~~i~f~s~~~g------------~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~------~~i~~~ 358 (429)
T PRK01742 301 PDGQSILFTSDRSG------------SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING------DNVVKQ 358 (429)
T ss_pred CCCCEEEEEECCCC------------CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC------CCEEEE
Confidence 3555 444432221 1356667766554333311 11 11111112344555443 247889
Q ss_pred eCCCCceEee
Q 042957 267 DGELNMWDEV 276 (371)
Q Consensus 267 d~~~~~W~~~ 276 (371)
|+.+..++.+
T Consensus 359 Dl~~g~~~~l 368 (429)
T PRK01742 359 DLTSGSTEVL 368 (429)
T ss_pred ECCCCCeEEe
Confidence 9999888877
No 133
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.43 E-value=61 Score=35.40 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=43.1
Q ss_pred ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccC-----------CCCCCeEEE-ECCEEEEEcCC
Q 042957 188 WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQL-----------DIPPNQIVE-VDNRLFSSGDC 255 (371)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-----------~~~~~~~~~-~~~~iyv~GG~ 255 (371)
.++.|||....+ +.|.+||+.++....+...... -....++++ -+++|||....
T Consensus 813 ~dG~LYVADs~N--------------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 813 KDGQIYVADSYN--------------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CCCcEEEEECCC--------------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 467799887432 5789999998877655432210 011234444 36789988654
Q ss_pred CCCccCeEEEEeCCCCce
Q 042957 256 LKAWKGHIESYDGELNMW 273 (371)
Q Consensus 256 ~~~~~~~~~~yd~~~~~W 273 (371)
++ .|.++|+.+.+-
T Consensus 879 Nn----~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NS----LIRYLDLNKGEA 892 (1057)
T ss_pred CC----EEEEEECCCCcc
Confidence 44 599999988753
No 134
>PRK04043 tolB translocation protein TolB; Provisional
Probab=85.33 E-value=37 Score=32.75 Aligned_cols=192 Identities=9% Similarity=-0.082 Sum_probs=103.5
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECC-EEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGD-SVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
..++.+|..+++=+.+...+.. ......+-++ +|.+.-... ...++|.+|..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~------~~~~~~SPDG~~la~~~~~~---------------------g~~~Iy~~dl~ 265 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM------LVVSDVSKDGSKLLLTMAPK---------------------GQPDIYLYDTN 265 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc------EEeeEECCCCCEEEEEEccC---------------------CCcEEEEEECC
Confidence 4789999988876666543321 1111223344 565543321 14689999999
Q ss_pred CCeeeecCCCCCCCCCeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEE
Q 042957 117 SNEWTRCAPLSVPRYDFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVV 195 (371)
Q Consensus 117 ~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~ 195 (371)
+++++++...+.. .......- +.+|++..... ....++++|..+.+.+++..- +.... ...-+++..++
T Consensus 266 ~g~~~~LT~~~~~-d~~p~~SPDG~~I~F~Sdr~------g~~~Iy~~dl~~g~~~rlt~~--g~~~~-~~SPDG~~Ia~ 335 (419)
T PRK04043 266 TKTLTQITNYPGI-DVNGNFVEDDKRIVFVSDRL------GYPNIFMKKLNSGSVEQVVFH--GKNNS-SVSTYKNYIVY 335 (419)
T ss_pred CCcEEEcccCCCc-cCccEECCCCCEEEEEECCC------CCceEEEEECCCCCeEeCccC--CCcCc-eECCCCCEEEE
Confidence 9999888654431 11122222 45677765442 235799999999888776532 22222 23335543333
Q ss_pred ecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCE-EEEEcCCCCCccCeEEEEeCCCCceE
Q 042957 196 SGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNR-LFSSGDCLKAWKGHIESYDGELNMWD 274 (371)
Q Consensus 196 GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~yd~~~~~W~ 274 (371)
-......... .....++.+|++++.++.+.... .... ....-+++ |+..... .....+..++...+.=.
T Consensus 336 ~~~~~~~~~~-----~~~~~I~v~d~~~g~~~~LT~~~--~~~~-p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 336 SSRETNNEFG-----KNTFNLYLISTNSDYIRRLTANG--VNQF-PRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSF 405 (419)
T ss_pred EEcCCCcccC-----CCCcEEEEEECCCCCeEECCCCC--CcCC-eEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeE
Confidence 3322211000 01247899999999988876532 1111 12223444 5444322 22235888888776544
Q ss_pred ee
Q 042957 275 EV 276 (371)
Q Consensus 275 ~~ 276 (371)
.+
T Consensus 406 ~l 407 (419)
T PRK04043 406 LF 407 (419)
T ss_pred Ee
Confidence 44
No 135
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.88 E-value=37 Score=32.44 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=40.9
Q ss_pred ceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCC-CCCCeeEEEE-CCEEEE
Q 042957 67 GFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSV-PRYDFACTVC-DNKIYV 144 (371)
Q Consensus 67 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~-~~~lyv 144 (371)
...+...++..|++|-. ..+++=.-.-.+|++++..+. +-........ ++.+++
T Consensus 139 l~~v~f~~~~g~~vG~~------------------------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~i 194 (398)
T PLN00033 139 FNSISFKGKEGWIIGKP------------------------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEM 194 (398)
T ss_pred eeeeEEECCEEEEEcCc------------------------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEE
Confidence 34555667889988532 223332334578998864321 2122233334 456777
Q ss_pred EcCCCCCCCCCCCceEEEEeCCCCceEeC
Q 042957 145 AGGKSNLFSAKGTASAEVYHPELDQWTPL 173 (371)
Q Consensus 145 ~GG~~~~~~~~~~~~~~~yd~~t~~W~~~ 173 (371)
+|.. ..+++-+-.-.+|+.+
T Consensus 195 vg~~---------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 195 VTDE---------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred Eecc---------ceEEEECCCCCCceEc
Confidence 7643 2355555566789987
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.34 E-value=39 Score=32.29 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=33.3
Q ss_pred ceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEE---EECCEEE
Q 042957 67 GFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACT---VCDNKIY 143 (371)
Q Consensus 67 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~---~~~~~ly 143 (371)
-++++..+.--|++||.- ...+|.....++.--.+- ..++....+ .-++..+
T Consensus 84 v~al~s~n~G~~l~ag~i----------------------~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTI----------------------SGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred eeeeecCCCceEEEeecc----------------------cCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEE
Confidence 346777777788888842 345666555554321111 233333222 2378888
Q ss_pred EEcCCCC
Q 042957 144 VAGGKSN 150 (371)
Q Consensus 144 v~GG~~~ 150 (371)
+-||.++
T Consensus 139 iTgskDg 145 (476)
T KOG0646|consen 139 ITGSKDG 145 (476)
T ss_pred EecCCCc
Confidence 8899874
No 137
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.86 E-value=16 Score=28.57 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=45.9
Q ss_pred ccceEEEEECCCCeeeecCCC---CCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEE-eCCCCceEeC
Q 042957 106 VLAWVLRYNVKSNEWTRCAPL---SVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVY-HPELDQWTPL 173 (371)
Q Consensus 106 ~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~y-d~~t~~W~~~ 173 (371)
....+..||..+.+|+.+..+ ........++.++|+|-++.-.... ....-++++. |...++|.+.
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~--~~~~~~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG--EPDSIDIWVLEDYEKQEWSKK 87 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC--CcceEEEEEeeccccceEEEE
Confidence 356799999999999887643 3446677888999999998554321 1123456666 4557789865
No 138
>PTZ00421 coronin; Provisional
Probab=82.57 E-value=53 Score=32.44 Aligned_cols=146 Identities=10% Similarity=0.012 Sum_probs=67.5
Q ss_pred ceEEEEECCCCeeee-cCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceE-eCCCCCCCceeeEE
Q 042957 108 AWVLRYNVKSNEWTR-CAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWT-PLPNMSTLRYKCVG 185 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~~~ 185 (371)
..+..+|+.+.+-.. +..... .........++.+++.|+.+ ..+.+||+.+.+-. .+..-...+.....
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~-~V~sla~spdG~lLatgs~D--------g~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSD-QITSLEWNLDGSLLCTTSKD--------KKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCC-ceEEEEEECCCCEEEEecCC--------CEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 457788887664321 111111 11112223367888888875 36889999876421 12111111111111
Q ss_pred EEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEE--CCEEEEEcCCCCCccCeE
Q 042957 186 VTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV--DNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~ 263 (371)
...++..++..|.+... ...+..||+.+..-. +............+..+ ++.++++||... ..|
T Consensus 219 w~~~~~~ivt~G~s~s~----------Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD---g~I 284 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQ----------QRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSKGE---GNI 284 (493)
T ss_pred EcCCCCeEEEEecCCCC----------CCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEeCC---CeE
Confidence 12233344444443221 157889998754311 11000000011112222 455666665322 248
Q ss_pred EEEeCCCCceEee
Q 042957 264 ESYDGELNMWDEV 276 (371)
Q Consensus 264 ~~yd~~~~~W~~~ 276 (371)
.+||+.+......
T Consensus 285 riwdl~~~~~~~~ 297 (493)
T PTZ00421 285 RCFELMNERLTFC 297 (493)
T ss_pred EEEEeeCCceEEE
Confidence 8899888765543
No 139
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=81.51 E-value=17 Score=32.16 Aligned_cols=139 Identities=9% Similarity=0.030 Sum_probs=63.6
Q ss_pred CCCCceecc--CCCCc--ccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCe-
Q 042957 45 PSNNTWSHV--SHIPD--LLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNE- 119 (371)
Q Consensus 45 ~~~~~W~~~--~~~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~- 119 (371)
...+.|+.- +..+. ...-.+-.-|+.+.+++.=|.+|=.+..- ....-.+..|...-++
T Consensus 112 F~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~----------------sPRe~G~~yfs~~~~sp 175 (367)
T PF12217_consen 112 FHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV----------------SPRELGFLYFSDAFASP 175 (367)
T ss_dssp STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS----------------SS-EEEEEEETTTTT-T
T ss_pred cccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC----------------CcceeeEEEecccccCC
Confidence 466778763 33332 00012345678888888778886433111 0111223333222111
Q ss_pred --e--eecCC-CCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCC-CCCCceeeEEEEECCEEE
Q 042957 120 --W--TRCAP-LSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPN-MSTLRYKCVGVTWQGKIH 193 (371)
Q Consensus 120 --W--~~~~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~~~~~~~~~~~~~ly 193 (371)
. +.++. .....+..++-.++++||+.--... ..+.-+.+.+-+..-..|+.+.- -..-......+.+++.||
T Consensus 176 ~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~--~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~ 253 (367)
T PF12217_consen 176 GVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTL--PTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLY 253 (367)
T ss_dssp T--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES---TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEE
T ss_pred cceeeeechhhhccccccchhhhhCCEEEEEEcCcC--CCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEE
Confidence 1 12221 2223345667778999999853322 22334677888888889988742 122233445578899999
Q ss_pred EEecccCC
Q 042957 194 VVSGFAQR 201 (371)
Q Consensus 194 v~GG~~~~ 201 (371)
+||-....
T Consensus 254 mFgsERA~ 261 (367)
T PF12217_consen 254 MFGSERAE 261 (367)
T ss_dssp EEEE-SST
T ss_pred EEeccccc
Confidence 99976543
No 140
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=81.44 E-value=40 Score=32.06 Aligned_cols=115 Identities=7% Similarity=0.066 Sum_probs=63.3
Q ss_pred CeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceee--EEEEECCEEEEEecccCCCCCCCCc
Q 042957 132 DFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKC--VGVTWQGKIHVVSGFAQRADSDGSV 208 (371)
Q Consensus 132 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~--~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (371)
..+++.+ ++-||..|-.+ ..+-+||.++.. .++.+|. ..+. ++...++-.|++-+.++
T Consensus 350 ~ts~~fHpDgLifgtgt~d--------~~vkiwdlks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~add-------- 410 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD--------GVVKIWDLKSQT--NVAKFPG-HTGPVKAISFSENGYWLATAADD-------- 410 (506)
T ss_pred eEEeeEcCCceEEeccCCC--------ceEEEEEcCCcc--ccccCCC-CCCceeEEEeccCceEEEEEecC--------
Confidence 3444444 56666665544 357889998876 5555554 2222 12223444444443222
Q ss_pred cccccCeeEEEECCCCceeeccccccCCCCCCeEEEE--CCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 209 HFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV--DNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 209 ~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
.+|.+||++..+ .++..+...........+ -++.++++|..- .++.|+-.+..|+++
T Consensus 411 -----~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l----~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 411 -----GSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL----QVYICKKKTKSWTEI 469 (506)
T ss_pred -----CeEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeeccee----EEEEEecccccceee
Confidence 358999998775 222222222111112222 456777776443 488889999999999
No 141
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=81.41 E-value=38 Score=30.66 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEE---EeCCCCceEeCCCCCCCceeeEEEEE----CCEEEEEecccCCCCCCCCcccc
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEV---YHPELDQWTPLPNMSTLRYKCVGVTW----QGKIHVVSGFAQRADSDGSVHFT 211 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~---yd~~t~~W~~~~~~p~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~ 211 (371)
++..++-||.+. .+.. |.-..|.|..- +..++.+-+. +..|+-+|
T Consensus 58 ~gs~~aSgG~Dr--------~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~~d~s~i~S~g--------------- 109 (338)
T KOG0265|consen 58 DGSCFASGGSDR--------AIVLWNVYGDCENFWVLK-----GHSGAVMELHGMRDGSHILSCG--------------- 109 (338)
T ss_pred CCCeEeecCCcc--------eEEEEeccccccceeeec-----cccceeEeeeeccCCCEEEEec---------------
Confidence 678888899863 3444 44455666443 2222222111 33465555
Q ss_pred ccCeeEEEECCCCceee
Q 042957 212 ERSSAEVYDTQAGKWDL 228 (371)
Q Consensus 212 ~~~~v~~yd~~t~~W~~ 228 (371)
.-+.+..||.++++=.+
T Consensus 110 tDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIR 126 (338)
T ss_pred CCceEEEEecccceeee
Confidence 33689999999986443
No 142
>PTZ00420 coronin; Provisional
Probab=81.23 E-value=64 Score=32.48 Aligned_cols=141 Identities=7% Similarity=0.058 Sum_probs=67.4
Q ss_pred ceEEEEECCCCee-eecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCC---Cceee
Q 042957 108 AWVLRYNVKSNEW-TRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMST---LRYKC 183 (371)
Q Consensus 108 ~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~---~~~~~ 183 (371)
..+..+|+.+.+= ..+. .+ ..........++.+++.++.+ ..+.+||+.+.+- +..+.. .+...
T Consensus 148 gtIrIWDl~tg~~~~~i~-~~-~~V~SlswspdG~lLat~s~D--------~~IrIwD~Rsg~~--i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN-MP-KKLSSLKWNIKGNLLSGTCVG--------KHMHIIDPRKQEI--ASSFHIHDGGKNTK 215 (568)
T ss_pred CeEEEEECCCCcEEEEEe-cC-CcEEEEEECCCCCEEEEEecC--------CEEEEEECCCCcE--EEEEecccCCceeE
Confidence 4567778766541 1111 11 111112222367788777754 4689999987642 211111 11111
Q ss_pred EEEE----ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCC-ceeeccccccCCCCCCeEEEE---CCEEEEEcCC
Q 042957 184 VGVT----WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG-KWDLVARMWQLDIPPNQIVEV---DNRLFSSGDC 255 (371)
Q Consensus 184 ~~~~----~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~ 255 (371)
.... -++..++.+|.+... ...+.+||+++. .-.....+... ...-+..+ .+.+|+.|..
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~----------~R~VkLWDlr~~~~pl~~~~ld~~--~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNN----------MREMKLWDLKNTTSALVTMSIDNA--SAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCC----------ccEEEEEECCCCCCceEEEEecCC--ccceEEeeeCCCCCEEEEEEC
Confidence 1111 244555565655421 146889998852 21111111110 01011122 4678888754
Q ss_pred CCCccCeEEEEeCCCCceEee
Q 042957 256 LKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 256 ~~~~~~~~~~yd~~~~~W~~~ 276 (371)
+. .+..|+.....-..+
T Consensus 284 D~----tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 284 DG----NCRYYQHSLGSIRKV 300 (568)
T ss_pred CC----eEEEEEccCCcEEee
Confidence 44 488998877655555
No 143
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.86 E-value=42 Score=35.10 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=24.1
Q ss_pred EeeeCCeEEEEcceeeccc-ccceeeEEEEeeccccccccccc
Q 042957 308 MAPIGTHLYFLAGYRMAGE-LARTMSMVHIFDTAAKSDAWRSF 349 (371)
Q Consensus 308 ~~~~~~~l~v~GG~~~~~~-~~~~~~~v~~~d~~~~~~~W~~~ 349 (371)
-++.++.||+ |+....+. .......|..||.++.+..|+-=
T Consensus 312 P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 312 PLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 3555776655 54322211 11235678899999887778754
No 144
>PRK10115 protease 2; Provisional
Probab=80.46 E-value=76 Score=32.85 Aligned_cols=151 Identities=9% Similarity=-0.039 Sum_probs=78.5
Q ss_pred ccceEEEEEC--CCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCC-CCceEeCCCCCCCcee
Q 042957 106 VLAWVLRYNV--KSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPE-LDQWTPLPNMSTLRYK 182 (371)
Q Consensus 106 ~~~~v~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~~~~ 182 (371)
..++++.|+. ....|..+-+.+.. ..+.....++.+|+.--.+. ....+...+.. ..+|+.+-+....+.-
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~-----~~~~l~~~~~~~~~~~~~l~~~~~~~~i 318 (686)
T PRK10115 245 TTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHG-----KNFGLYRTRVRDEQQWEELIPPRENIML 318 (686)
T ss_pred ccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCC-----CCceEEEecCCCcccCeEEECCCCCCEE
Confidence 3467888884 23444332222211 22333455788888854432 12346666666 5789887654322222
Q ss_pred eEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEE----EC-CEEEEEcCCCC
Q 042957 183 CVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVE----VD-NRLFSSGDCLK 257 (371)
Q Consensus 183 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~----~~-~~iyv~GG~~~ 257 (371)
-.+...++.|++..-..+ ...+.++|+.+.....+. ++.+.. . .... .+ +.+++.- ..-
T Consensus 319 ~~~~~~~~~l~~~~~~~g------------~~~l~~~~~~~~~~~~l~-~~~~~~-~-~~~~~~~~~~~~~~~~~~-ss~ 382 (686)
T PRK10115 319 EGFTLFTDWLVVEERQRG------------LTSLRQINRKTREVIGIA-FDDPAY-V-TWIAYNPEPETSRLRYGY-SSM 382 (686)
T ss_pred EEEEEECCEEEEEEEeCC------------EEEEEEEcCCCCceEEec-CCCCce-E-eeecccCCCCCceEEEEE-ecC
Confidence 234455777777764332 246788887665555443 111111 0 1111 11 3333321 122
Q ss_pred CccCeEEEEeCCCCceEeecC
Q 042957 258 AWKGHIESYDGELNMWDEVNG 278 (371)
Q Consensus 258 ~~~~~~~~yd~~~~~W~~~~~ 278 (371)
.....++.||+.+.+|+.++.
T Consensus 383 ~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 383 TTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCCCEEEEEECCCCcEEEEEe
Confidence 233579999999999998853
No 145
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.32 E-value=55 Score=31.20 Aligned_cols=145 Identities=10% Similarity=0.004 Sum_probs=80.9
Q ss_pred cceEEEEECCCC-----eeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc---eE-eCCCCC
Q 042957 107 LAWVLRYNVKSN-----EWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ---WT-PLPNMS 177 (371)
Q Consensus 107 ~~~v~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~---W~-~~~~~p 177 (371)
.+++|.+|.... .|+.+.+-. .-....+...++.+|+....+. ....+...++.... |. .+.+-.
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a-----~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDA-----PNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT------TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCC-----CCcEEEEecccccccccceeEEcCCC
Confidence 378999999875 777775421 1222344455999999866432 24577888887654 66 444333
Q ss_pred CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeec-cccccCCCCCCeEEEE-----CCEEEE
Q 042957 178 TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLV-ARMWQLDIPPNQIVEV-----DNRLFS 251 (371)
Q Consensus 178 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~-----~~~iyv 251 (371)
....-..+...++.|++.--.++ ...+.++|+. ..|... .+++... ++... .+.+++
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~------------~~~l~v~~~~-~~~~~~~~~~p~~g----~v~~~~~~~~~~~~~~ 387 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENG------------SSRLRVYDLD-DGKESREIPLPEAG----SVSGVSGDFDSDELRF 387 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETT------------EEEEEEEETT--TEEEEEEESSSSS----EEEEEES-TT-SEEEE
T ss_pred CceeEEEEEEECCEEEEEEEECC------------ccEEEEEECC-CCcEEeeecCCcce----EEeccCCCCCCCEEEE
Confidence 33333444567888887764332 3578899999 223322 2233211 11222 234443
Q ss_pred E-cCCCCCccCeEEEEeCCCCceEee
Q 042957 252 S-GDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 252 ~-GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
. .+.. ....++.||+.+++.+.+
T Consensus 388 ~~ss~~--~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 388 SYSSFT--TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEETT--EEEEEEEEETTTTCEEEE
T ss_pred EEeCCC--CCCEEEEEECCCCCEEEE
Confidence 3 2221 124799999999998877
No 146
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.18 E-value=50 Score=30.65 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=38.3
Q ss_pred CCccccceeEEeCCCCc--eec-cCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccce
Q 042957 33 RSNISNWLASYNPSNNT--WSH-VSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAW 109 (371)
Q Consensus 33 ~~~~~~~~~~yd~~~~~--W~~-~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (371)
......-+..||+++-+ ++. +|.-+-......+..+++..-+..+||+ +......
T Consensus 62 rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~----------------------N~TPa~S 119 (342)
T PF06433_consen 62 RGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ----------------------NFTPATS 119 (342)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE----------------------EESSSEE
T ss_pred cccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEE----------------------ccCCCCe
Confidence 34556778999998874 332 2221100000112233333335578877 4456788
Q ss_pred EEEEECCCCeeee
Q 042957 110 VLRYNVKSNEWTR 122 (371)
Q Consensus 110 v~~yd~~~~~W~~ 122 (371)
|-+.|...++-..
T Consensus 120 VtVVDl~~~kvv~ 132 (342)
T PF06433_consen 120 VTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCceee
Confidence 9999999998754
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=80.12 E-value=53 Score=30.83 Aligned_cols=67 Identities=7% Similarity=0.052 Sum_probs=36.1
Q ss_pred CccccceeEEeCCCCceeccCCCCcccc---cccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceE
Q 042957 34 SNISNWLASYNPSNNTWSHVSHIPDLLE---NHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWV 110 (371)
Q Consensus 34 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 110 (371)
......+..||+++.+=..--++|..|. ..-...+++..-+..+||. -+ ...+.|
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~---------------------~p~~~V 130 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-QF---------------------SPSPAV 130 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-cC---------------------CCCCEE
Confidence 3445779999999887432222221110 0001122222224467776 21 236788
Q ss_pred EEEECCCCeeee
Q 042957 111 LRYNVKSNEWTR 122 (371)
Q Consensus 111 ~~yd~~~~~W~~ 122 (371)
-++|..+++-..
T Consensus 131 ~VvD~~~~kvv~ 142 (352)
T TIGR02658 131 GVVDLEGKAFVR 142 (352)
T ss_pred EEEECCCCcEEE
Confidence 999998887644
No 148
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.01 E-value=82 Score=33.00 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=40.9
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc--eeeccccccCCCCCCeEEEECCEEEEEcCCCCCccC
Q 042957 184 VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK--WDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKG 261 (371)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 261 (371)
+-++.+++|++ |+...+..... .....+..||.+|++ |+.-...+.... ...+++.|..||-+. +
T Consensus 311 ~P~V~~g~VIv-G~~v~d~~~~~----~~~G~I~A~Da~TGkl~W~~~~g~p~~~~-----~~~~g~~~~~gg~n~-W-- 377 (764)
T TIGR03074 311 PPLVAGTTVVI-GGRVADNYSTD----EPSGVIRAFDVNTGALVWAWDPGNPDPTA-----PPAPGETYTRNTPNS-W-- 377 (764)
T ss_pred CCEEECCEEEE-Eeccccccccc----CCCcEEEEEECCCCcEeeEEecCCCCccc-----CCCCCCEeccCCCCc-c--
Confidence 33567887776 54322211000 023578999999875 654432222211 112566777655322 1
Q ss_pred eEEEEeCCCCceEe
Q 042957 262 HIESYDGELNMWDE 275 (371)
Q Consensus 262 ~~~~yd~~~~~W~~ 275 (371)
....||++++.--.
T Consensus 378 ~~~s~D~~~glvy~ 391 (764)
T TIGR03074 378 SVASYDEKLGLVYL 391 (764)
T ss_pred CceEEcCCCCeEEE
Confidence 26678888776533
No 149
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=79.87 E-value=42 Score=29.60 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=71.8
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEE--ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTV--CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVG 185 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~ 185 (371)
..+-.||..++.=..+...-..+.+-.++. .+++--.-||.++ .+-++|..+-..++.-..+.+.. .+
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg--------t~kIWdlR~~~~qR~~~~~spVn--~v 130 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG--------TVKIWDLRSLSCQRNYQHNSPVN--TV 130 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc--------eEEEEeccCcccchhccCCCCcc--eE
Confidence 468899998877333322223334444443 4788777788763 57778887755555433343332 22
Q ss_pred EEE--CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEE-ECCEEEEEcCCCCCccCe
Q 042957 186 VTW--QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVE-VDNRLFSSGDCLKAWKGH 262 (371)
Q Consensus 186 ~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~ 262 (371)
+.+ +..|++ | .. ...|.++|+.++.-.... +|....+..++++ .++++++.....+ .
T Consensus 131 vlhpnQteLis-~-dq-------------sg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG----~ 190 (311)
T KOG0315|consen 131 VLHPNQTELIS-G-DQ-------------SGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANNKG----N 190 (311)
T ss_pred EecCCcceEEe-e-cC-------------CCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecCCc----c
Confidence 333 333443 2 11 246899999998654432 3333333333443 3555544432222 4
Q ss_pred EEEEeCCC
Q 042957 263 IESYDGEL 270 (371)
Q Consensus 263 ~~~yd~~~ 270 (371)
++++++-+
T Consensus 191 cyvW~l~~ 198 (311)
T KOG0315|consen 191 CYVWRLLN 198 (311)
T ss_pred EEEEEccC
Confidence 88877766
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=78.54 E-value=78 Score=31.88 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=65.4
Q ss_pred ECCEEEEEcCCCCCCCCCCCceEEEEeCCC-CceEeCCCCCCCceeeEEE---EECCEEEEEecccCCCCCCCCcccccc
Q 042957 138 CDNKIYVAGGKSNLFSAKGTASAEVYHPEL-DQWTPLPNMSTLRYKCVGV---TWQGKIHVVSGFAQRADSDGSVHFTER 213 (371)
Q Consensus 138 ~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t-~~W~~~~~~p~~~~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~~~~ 213 (371)
-++.++++|-.. .-.++...+.- -+-..+..+|..+...... .-+++++++. . ..
T Consensus 392 Pdg~~Ia~st~~-------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s--~------------~~ 450 (691)
T KOG2048|consen 392 PDGNLIAISTVS-------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS--K------------NI 450 (691)
T ss_pred CCCCEEEEeecc-------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe--c------------cc
Confidence 355666664322 22344444332 2334556677665333322 3467788877 1 23
Q ss_pred CeeEEEECCCCceeeccccccC-CCC-CCeEE--EECCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 214 SSAEVYDTQAGKWDLVARMWQL-DIP-PNQIV--EVDNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~~~~~-~~~-~~~~~--~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
.+++.++.++.+-+.+...... ... .+.++ ..|+.|-++++.. .+++||+++.+-+.+
T Consensus 451 ~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g-----~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 451 FSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG-----QIFVYNLETLESHLL 512 (691)
T ss_pred ceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc-----eEEEEEcccceeecc
Confidence 5788899888887776544332 111 11222 2477787877544 499999999988887
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=78.51 E-value=59 Score=31.63 Aligned_cols=53 Identities=15% Similarity=-0.002 Sum_probs=33.0
Q ss_pred eeEEEECCCC----ceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceE
Q 042957 215 SAEVYDTQAG----KWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWD 274 (371)
Q Consensus 215 ~v~~yd~~t~----~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~ 274 (371)
.|..||.... .|......|... -++.-.+..|++.=|.+.+ +..||+.+..-+
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~~g---icfspsne~l~vsVG~Dkk----i~~yD~~s~~s~ 244 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPCRG---ICFSPSNEALLVSVGYDKK----INIYDIRSQAST 244 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCcCc---ceecCCccceEEEecccce----EEEeeccccccc
Confidence 4566666543 355555444332 2344568888888887765 999999865433
No 152
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=78.48 E-value=50 Score=31.20 Aligned_cols=182 Identities=15% Similarity=0.060 Sum_probs=88.2
Q ss_pred cceeEEeCCCCc-eeccCCCCcccccccccceEEEEE---CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEE
Q 042957 38 NWLASYNPSNNT-WSHVSHIPDLLENHVLKGFSIVSL---GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRY 113 (371)
Q Consensus 38 ~~~~~yd~~~~~-W~~~~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 113 (371)
+++...|..+.+ -.+++... ..|..... +.++|+.+ . ...+-++
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~--------~~h~~~~~s~Dgr~~yv~~-r-----------------------dg~vsvi 63 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG--------APHAGLKFSPDGRYLYVAN-R-----------------------DGTVSVI 63 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST--------TEEEEEE-TT-SSEEEEEE-T-----------------------TSEEEEE
T ss_pred CEEEEEECCCCeEEEEEcCCC--------CceeEEEecCCCCEEEEEc-C-----------------------CCeEEEE
Confidence 568889988866 33333221 12343333 35788884 2 2468899
Q ss_pred ECCCCeeeecCCCCCCCCCeeEEE-ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceE-eCC--CC----CCCceeeEE
Q 042957 114 NVKSNEWTRCAPLSVPRYDFACTV-CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWT-PLP--NM----STLRYKCVG 185 (371)
Q Consensus 114 d~~~~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~-~~~--~~----p~~~~~~~~ 185 (371)
|+.+.+ .+...+.......++. .+++..+++.+. .+.+.++|.++.+=. .++ .+ +..|-....
T Consensus 64 D~~~~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv 134 (369)
T PF02239_consen 64 DLATGK--VVATIKVGGNPRGIAVSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV 134 (369)
T ss_dssp ETTSSS--EEEEEE-SSEEEEEEE--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE
T ss_pred ECCccc--EEEEEecCCCcceEEEcCCCCEEEEEecC-------CCceeEeccccccceeecccccccccccCCCceeEE
Confidence 998887 3333333433333333 466555555443 357889998876432 222 12 223433333
Q ss_pred EEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEE
Q 042957 186 VTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 265 (371)
+...+..||+.-... ..++..|.....=..+..+...+........-+++.++.+-.. .+.+-+
T Consensus 135 ~s~~~~~fVv~lkd~-------------~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~---sn~i~v 198 (369)
T PF02239_consen 135 ASPGRPEFVVNLKDT-------------GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG---SNKIAV 198 (369)
T ss_dssp E-SSSSEEEEEETTT-------------TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG---GTEEEE
T ss_pred ecCCCCEEEEEEccC-------------CeEEEEEeccccccceeeecccccccccccCcccceeeecccc---cceeEE
Confidence 344566677763332 4677777665422222222222222222323344444443222 236889
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
.|.+++.-..+
T Consensus 199 iD~~~~k~v~~ 209 (369)
T PF02239_consen 199 IDTKTGKLVAL 209 (369)
T ss_dssp EETTTTEEEEE
T ss_pred EeeccceEEEE
Confidence 99988765544
No 153
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.10 E-value=59 Score=29.73 Aligned_cols=162 Identities=11% Similarity=0.136 Sum_probs=88.7
Q ss_pred cceEEEEEC--CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCC--CCeeEEEECCE
Q 042957 66 KGFSIVSLG--DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPR--YDFACTVCDNK 141 (371)
Q Consensus 66 ~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~ 141 (371)
.+|.++..- ..+.+|+-+ .-....+||+.+.+=...-..+..| ++|++..-+++
T Consensus 6 RgH~~a~~p~~~~avafaRR----------------------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~ 63 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR----------------------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR 63 (305)
T ss_pred cccceeeCCCCCeEEEEEeC----------------------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC
Confidence 466777763 567777654 2456789999888754433335555 56777777654
Q ss_pred -EEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCC-CceeeEEEEE-CC-EEEEEe-cccCCCCC-CCCccc-cccC
Q 042957 142 -IYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMST-LRYKCVGVTW-QG-KIHVVS-GFAQRADS-DGSVHF-TERS 214 (371)
Q Consensus 142 -lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~-~~-~lyv~G-G~~~~~~~-~~~~~~-~~~~ 214 (371)
||..=. + .......+-+||.. +..+++...+. +..-|-+... ++ .|.|.. |....... +..... +-..
T Consensus 64 ~LytTEn-d---~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p 138 (305)
T PF07433_consen 64 LLYTTEN-D---YETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP 138 (305)
T ss_pred EEEEecc-c---cCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence 554422 1 33345679999998 67788877664 3444555544 45 466654 43322111 100000 0113
Q ss_pred eeEEEECCCCceeeccccccC--CCCCCeEEEECCEEEEEcC
Q 042957 215 SAEVYDTQAGKWDLVARMWQL--DIPPNQIVEVDNRLFSSGD 254 (371)
Q Consensus 215 ~v~~yd~~t~~W~~~~~~~~~--~~~~~~~~~~~~~iyv~GG 254 (371)
++...|..+++-.....+|.. ......+++-++-+.++|.
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 456678888775444444331 1111235555556666664
No 154
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=76.91 E-value=52 Score=28.98 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=86.6
Q ss_pred ccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCe---eeecCCCC---------CCCCC
Q 042957 65 LKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNE---WTRCAPLS---------VPRYD 132 (371)
Q Consensus 65 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~---W~~~~~~~---------~~r~~ 132 (371)
-.+.+-++.++.+|.-.+. ...+-+|+..+.. |..++.+. .+...
T Consensus 68 ~~gTg~VVynGs~yynk~~-----------------------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sd 124 (249)
T KOG3545|consen 68 WDGTGHVVYNGSLYYNKAG-----------------------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSD 124 (249)
T ss_pred ccccceEEEcceEEeeccC-----------------------CcceEEEEeecceeeeeeeccccccCCCcccccCCCcc
Confidence 4556777778877776533 4668889887743 55554321 12233
Q ss_pred eeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCC----CceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCc
Q 042957 133 FACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPEL----DQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSV 208 (371)
Q Consensus 133 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t----~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (371)
.-+++-.+-|+++=-...+ +..-.+..+|+.+ .+|...- + .+....+.++-|.||++-.......
T Consensus 125 iD~avDE~GLWviYat~~~---~g~iv~skLdp~tl~~e~tW~T~~--~-k~~~~~aF~iCGvLY~v~S~~~~~~----- 193 (249)
T KOG3545|consen 125 IDLAVDENGLWVIYATPEN---AGTIVLSKLDPETLEVERTWNTTL--P-KRSAGNAFMICGVLYVVHSYNCTHT----- 193 (249)
T ss_pred ccceecccceeEEeccccc---CCcEEeeccCHHHhheeeeecccc--C-CCCcCceEEEeeeeEEEeccccCCc-----
Confidence 4455556667776443321 1122246677744 3564332 2 2233345577788999987665542
Q ss_pred cccccCeeEEEECCCCceeeccccccCCCCC-CeEEEE---CCEEEEEcCCCCCccCeEEEEeC
Q 042957 209 HFTERSSAEVYDTQAGKWDLVARMWQLDIPP-NQIVEV---DNRLFSSGDCLKAWKGHIESYDG 268 (371)
Q Consensus 209 ~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~yd~ 268 (371)
.--+.||+.+++=+.+. +|-+.... .+++-. +.+||+..- ..+..|++
T Consensus 194 -----~i~yaydt~~~~~~~~~-ipf~N~y~~~~~idYNP~D~~LY~wdn------g~~l~y~l 245 (249)
T KOG3545|consen 194 -----QISYAYDTTTGTQERID-LPFPNPYSYATMIDYNPRDRRLYAWDN------GHQLTYNL 245 (249)
T ss_pred -----eEEEEEEcCCCceeccc-ccccchhhhhhccCCCcccceeeEecC------CcEEEEEe
Confidence 12378999988865553 33222222 223222 678888832 23555654
No 155
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=75.95 E-value=72 Score=30.15 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCC
Q 042957 47 NNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPL 126 (371)
Q Consensus 47 ~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 126 (371)
.+.|..+..+.. ..--++..+|++|++.- ...++.++..-. -.++.+.
T Consensus 189 ~~~Wt~l~~~~~-------~~~DIi~~kGkfYAvD~------------------------~G~l~~i~~~l~-i~~v~~~ 236 (373)
T PLN03215 189 GNVLKALKQMGY-------HFSDIIVHKGQTYALDS------------------------IGIVYWINSDLE-FSRFGTS 236 (373)
T ss_pred CCeeeEccCCCc-------eeeEEEEECCEEEEEcC------------------------CCeEEEEecCCc-eeeecce
Confidence 489999975432 34578889999999932 234566653211 1222211
Q ss_pred -----CCC--CCCeeEEEECCEEEEEcCCCCCCCC---------CCCc--eEEEEeCCCCceEeCCCCC
Q 042957 127 -----SVP--RYDFACTVCDNKIYVAGGKSNLFSA---------KGTA--SAEVYHPELDQWTPLPNMS 177 (371)
Q Consensus 127 -----~~~--r~~~~~~~~~~~lyv~GG~~~~~~~---------~~~~--~~~~yd~~t~~W~~~~~~p 177 (371)
... ....-++...|+|+++......... .... .++..|.+..+|.++..|.
T Consensus 237 i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 237 LDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 111 1233456677889998774221100 1122 4455588889999998765
No 156
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=75.52 E-value=62 Score=30.58 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=51.2
Q ss_pred CCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc-----CCC-CCC
Q 042957 167 LDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ-----LDI-PPN 240 (371)
Q Consensus 167 t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~-----~~~-~~~ 240 (371)
.+.|..+..+. ...-.++.++|++|++.- ...++.++.+- +-.++..... ... ...
T Consensus 189 ~~~Wt~l~~~~--~~~~DIi~~kGkfYAvD~---------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALKQMG--YHFSDIIVHKGQTYALDS---------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEccCCC--ceeeEEEEECCEEEEEcC---------------CCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 48999997422 223466789999999841 13455555321 1122221110 110 112
Q ss_pred eEEEECCEEEEEcCCCCC-------------ccC--eEEEEeCCCCceEee
Q 042957 241 QIVEVDNRLFSSGDCLKA-------------WKG--HIESYDGELNMWDEV 276 (371)
Q Consensus 241 ~~~~~~~~iyv~GG~~~~-------------~~~--~~~~yd~~~~~W~~~ 276 (371)
..+...++|+++...... ... .+++.|.+..+|.++
T Consensus 251 yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV 301 (373)
T PLN03215 251 RFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEV 301 (373)
T ss_pred eEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEe
Confidence 356677889988763110 112 355668888999999
No 157
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=74.73 E-value=67 Score=29.17 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=69.3
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 187 (371)
..+-.||...++-... +.....-..++..+..=.+.||.++ .+-+||..+..=..+..--.+.....- .
T Consensus 35 gslrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~~~~igth~~~i~ci~~-~ 103 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLDG--------QVRRYDLNTGNEDQIGTHDEGIRCIEY-S 103 (323)
T ss_pred CcEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccCc--------eEEEEEecCCcceeeccCCCceEEEEe-e
Confidence 5678888877732111 1111111233344666667788763 588999988776665432222211111 1
Q ss_pred ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEe
Q 042957 188 WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYD 267 (371)
Q Consensus 188 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd 267 (371)
.....+|.||++ ..+..+|+.... .+.....+.. ..++ .+.+.++|+|+.+. .+.+||
T Consensus 104 ~~~~~vIsgsWD--------------~~ik~wD~R~~~--~~~~~d~~kk-Vy~~-~v~g~~LvVg~~~r----~v~iyD 161 (323)
T KOG1036|consen 104 YEVGCVISGSWD--------------KTIKFWDPRNKV--VVGTFDQGKK-VYCM-DVSGNRLVVGTSDR----KVLIYD 161 (323)
T ss_pred ccCCeEEEcccC--------------ccEEEEeccccc--cccccccCce-EEEE-eccCCEEEEeecCc----eEEEEE
Confidence 234456778766 578889988721 1111111111 1123 34555666666554 499999
Q ss_pred CCCC
Q 042957 268 GELN 271 (371)
Q Consensus 268 ~~~~ 271 (371)
+.+.
T Consensus 162 LRn~ 165 (323)
T KOG1036|consen 162 LRNL 165 (323)
T ss_pred cccc
Confidence 9774
No 158
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.71 E-value=80 Score=30.08 Aligned_cols=144 Identities=8% Similarity=0.004 Sum_probs=77.6
Q ss_pred cceEEEEECCCCeee--ecCCCCCCCC-CeeEEE-ECCE-EEEEcCCCCCCCCCCCceEEEEeCCCC-----ceEeCCCC
Q 042957 107 LAWVLRYNVKSNEWT--RCAPLSVPRY-DFACTV-CDNK-IYVAGGKSNLFSAKGTASAEVYHPELD-----QWTPLPNM 176 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~--~~~~~~~~r~-~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~yd~~t~-----~W~~~~~~ 176 (371)
...++++..-+..-+ .+-.-+.+.. ...+.. -+++ |++.-.... . .+.++..|.... .|+.+.+-
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~----~-~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT----S-ESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS----S-EEEEEEEECCCTTTSS-SEEEEEES
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc----c-CCeEEEEeccccCCCcCCcEEEeCC
Confidence 667888888776543 2222222222 222222 2444 444333321 1 378899998875 78887542
Q ss_pred CCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc---eeeccccccCCCCCCeEEEECCEEEEEc
Q 042957 177 STLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK---WDLVARMWQLDIPPNQIVEVDNRLFSSG 253 (371)
Q Consensus 177 p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~~~~~~~~~~~~~~iyv~G 253 (371)
-.+. ...+...++.+|+....... ...+..+++.+.. |..+-..+........+...++.|++..
T Consensus 276 ~~~~-~~~v~~~~~~~yi~Tn~~a~-----------~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 276 EDGV-EYYVDHHGDRLYILTNDDAP-----------NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-TT-T-----------T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred CCce-EEEEEccCCEEEEeeCCCCC-----------CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 2222 23344569999998764332 2578888888765 6643222222112235667788888874
Q ss_pred CCCCCccCeEEEEeCC
Q 042957 254 DCLKAWKGHIESYDGE 269 (371)
Q Consensus 254 G~~~~~~~~~~~yd~~ 269 (371)
-.+ ....+.+||+.
T Consensus 344 ~~~--~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 REN--GSSRLRVYDLD 357 (414)
T ss_dssp EET--TEEEEEEEETT
T ss_pred EEC--CccEEEEEECC
Confidence 321 23469999999
No 159
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=74.26 E-value=72 Score=29.35 Aligned_cols=188 Identities=11% Similarity=0.069 Sum_probs=83.0
Q ss_pred eeEEEECCEEEEEcCCCCC--CCCCCCceEEEE-eCCCCceEeCCC-----C---CCCceeeEEEEECCEEEEEecccCC
Q 042957 133 FACTVCDNKIYVAGGKSNL--FSAKGTASAEVY-HPELDQWTPLPN-----M---STLRYKCVGVTWQGKIHVVSGFAQR 201 (371)
Q Consensus 133 ~~~~~~~~~lyv~GG~~~~--~~~~~~~~~~~y-d~~t~~W~~~~~-----~---p~~~~~~~~~~~~~~lyv~GG~~~~ 201 (371)
++++.+++.|+++...... ........+..+ .....+|+.... - ......+.+++.+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 4677889999998753211 111112222333 344568876421 1 1122456677889999998764432
Q ss_pred CCCCCCccccccCeeEEE--ECCCCceeeccccccCCC---------CCCeEEEECCEEE--EEcCCCCCc-cCeEEEEe
Q 042957 202 ADSDGSVHFTERSSAEVY--DTQAGKWDLVARMWQLDI---------PPNQIVEVDNRLF--SSGDCLKAW-KGHIESYD 267 (371)
Q Consensus 202 ~~~~~~~~~~~~~~v~~y--d~~t~~W~~~~~~~~~~~---------~~~~~~~~~~~iy--v~GG~~~~~-~~~~~~yd 267 (371)
.... ....+..+ +....+|.....++.... .+.++.+-++.|. +.+-..+.. .-.+.+|.
T Consensus 82 ~~~~------~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGA------DDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYS 155 (310)
T ss_dssp --SS------TTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEE
T ss_pred cccc------cccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEE
Confidence 2111 11123333 223346987766654321 0111222223222 111111112 24577888
Q ss_pred CC-CCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeee-CCeEEEEcceeecccccceeeEEEEeeccccccc
Q 042957 268 GE-LNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPI-GTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDA 345 (371)
Q Consensus 268 ~~-~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~ 345 (371)
.. ...|+-- ..++ |..=..++++.- +++|+++.-..+. ...||.- .-...+
T Consensus 156 ~d~g~~W~ls-----kg~s--------------~~gC~~psv~EWe~gkLlM~~~c~~g------~rrVYeS--~DmG~t 208 (310)
T PF13859_consen 156 TDDGKTWKLS-----KGMS--------------PAGCSDPSVVEWEDGKLLMMTACDDG------RRRVYES--GDMGTT 208 (310)
T ss_dssp SSTTSS-EE------S------------------TT-EEEEEEEE-TTEEEEEEE-TTS---------EEEE--SSTTSS
T ss_pred CCCccceEec-----cccC--------------CCCcceEEEEeccCCeeEEEEecccc------eEEEEEE--ccccee
Confidence 87 6889987 4443 222356778888 7899988644321 2244433 222338
Q ss_pred ccc-cCccc
Q 042957 346 WRS-FEPIV 353 (371)
Q Consensus 346 W~~-~~~~p 353 (371)
|++ ++.++
T Consensus 209 Wtea~gtls 217 (310)
T PF13859_consen 209 WTEALGTLS 217 (310)
T ss_dssp -EE-TTTTT
T ss_pred hhhccCccc
Confidence 998 66666
No 160
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=74.25 E-value=76 Score=29.58 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=24.5
Q ss_pred eeeEeeeCCeEEEEcceeecccccceeeEEEEeecccccccccccCc
Q 042957 305 YLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEP 351 (371)
Q Consensus 305 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~ 351 (371)
.-++....+-+|+.||-.. .+..||.++. -.+..+..
T Consensus 363 intl~~nsD~v~~~G~dng---------~~~fwdwksg-~nyQ~~~t 399 (460)
T KOG0285|consen 363 INTLSVNSDGVLVSGGDNG---------SIMFWDWKSG-HNYQRGQT 399 (460)
T ss_pred eeeeeeccCceEEEcCCce---------EEEEEecCcC-cccccccc
Confidence 3455566778888888654 6778887765 45666633
No 161
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=74.04 E-value=1e+02 Score=31.06 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=73.3
Q ss_pred eEEEEECCCCe-eeecCCCCCCCCCeeE---EEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCC-----C
Q 042957 109 WVLRYNVKSNE-WTRCAPLSVPRYDFAC---TVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMST-----L 179 (371)
Q Consensus 109 ~v~~yd~~~~~-W~~~~~~~~~r~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-----~ 179 (371)
.+++..+..+. =+.+..+|..+-..+. +.-+++++++. . ...+++.++.++.+-+++.+... .
T Consensus 406 ~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~-------~~~~le~~el~~ps~kel~~~~~~~~~~~ 477 (691)
T KOG2048|consen 406 KIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-K-------NIFSLEEFELETPSFKELKSIQSQAKCPS 477 (691)
T ss_pred EEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-c-------ccceeEEEEecCcchhhhhccccccCCCc
Confidence 34554444332 2445666655433222 23367888875 1 24578888888888777654322 1
Q ss_pred ceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEE---EECCEEEEEcCCC
Q 042957 180 RYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIV---EVDNRLFSSGDCL 256 (371)
Q Consensus 180 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~---~~~~~iyv~GG~~ 256 (371)
.+.......++.|-+++ ....+.+|++++.+-..+..... ....+++ ...+.|.+.-
T Consensus 478 I~~l~~SsdG~yiaa~~---------------t~g~I~v~nl~~~~~~~l~~rln--~~vTa~~~~~~~~~~lvvat--- 537 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAIS---------------TRGQIFVYNLETLESHLLKVRLN--IDVTAAAFSPFVRNRLVVAT--- 537 (691)
T ss_pred ceeEEEcCCCCEEEEEe---------------ccceEEEEEcccceeecchhccC--cceeeeeccccccCcEEEEe---
Confidence 22223234566677777 23578999999998776653322 1111111 2244555542
Q ss_pred CCccCeEEEEeCCCCc
Q 042957 257 KAWKGHIESYDGELNM 272 (371)
Q Consensus 257 ~~~~~~~~~yd~~~~~ 272 (371)
..+.++.||++..+
T Consensus 538 --s~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 538 --SNNQVFEFDIEARN 551 (691)
T ss_pred --cCCeEEEEecchhh
Confidence 22358889986533
No 162
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.84 E-value=73 Score=30.17 Aligned_cols=226 Identities=9% Similarity=-0.024 Sum_probs=99.0
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEE-cCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYII-GGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
..++..|..+.+-.+|.+-+... ..+..++.-++.+|-+ .+ ..++..|+.
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~~~-------------------------~~l~~vdL~ 110 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVKNG-------------------------RSLRRVDLD 110 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEETT-------------------------TEEEEEETT
T ss_pred cceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEECC-------------------------CeEEEEECC
Confidence 55899999999999998865321 1222333335565444 33 357888888
Q ss_pred CCeeeecCCCCCCCCCeeEEEEC--CEEEEEcCCCC--CC-------------CCCCCceEEEEeCCCCceEeCCCCCCC
Q 042957 117 SNEWTRCAPLSVPRYDFACTVCD--NKIYVAGGKSN--LF-------------SAKGTASAEVYHPELDQWTPLPNMSTL 179 (371)
Q Consensus 117 ~~~W~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~--~~-------------~~~~~~~~~~yd~~t~~W~~~~~~p~~ 179 (371)
+.+=+.+-..|..-......+++ +.. ++|-... .. ..+..+.+...|+++++.+.+-.-..-
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~w 189 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDW 189 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-
T ss_pred cCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcc
Confidence 87755665555544444444332 222 2221100 00 012245677778888777666432222
Q ss_pred ceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECC-EEEEEcCCCCC
Q 042957 180 RYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDN-RLFSSGDCLKA 258 (371)
Q Consensus 180 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~-~iyv~GG~~~~ 258 (371)
..+....-.+..+.+|.-...-.. .-..|+.-|.......++..-...-...|-.-..++ .|+..+.....
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~--------Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDL--------VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTT--------SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred ccCcccCCCCCCEEEEeccCCcce--------eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCC
Confidence 233332334566666642222111 123688888876655555322211111222222233 34433322222
Q ss_pred ccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceee
Q 042957 259 WKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRM 323 (371)
Q Consensus 259 ~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 323 (371)
...-+..||+.+..=+.+ ..|+ ...|-+...+++|++=.|.+.
T Consensus 262 ~~~~i~~~d~~t~~~~~~-----~~~p-----------------~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRL-----MEMP-----------------WCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp --EEEEEE-TTT--EEEE-----EEE------------------SEEEEEE-TTSSEEEEEE---
T ss_pred CceEEEeeCCCCCCceEE-----EeCC-----------------ceeeeEEcCCCCEEEecCCCC
Confidence 233588899998754445 4453 577888888999988666543
No 163
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=72.59 E-value=69 Score=28.38 Aligned_cols=151 Identities=11% Similarity=0.059 Sum_probs=69.9
Q ss_pred EEECC-CCeeeecCCCCCC--------CCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEe-CCCCceEeCCCCCCC--
Q 042957 112 RYNVK-SNEWTRCAPLSVP--------RYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYH-PELDQWTPLPNMSTL-- 179 (371)
Q Consensus 112 ~yd~~-~~~W~~~~~~~~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd-~~t~~W~~~~~~p~~-- 179 (371)
..... ..+|.....++.. .....+..-++++++. .+.. ..........+. -.-.+|+.....+..
T Consensus 82 ~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~--~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~ 158 (275)
T PF13088_consen 82 SRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHE--SGGSFSAFVYYSDDGGKTWSSGSPIPDGQG 158 (275)
T ss_dssp EEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEE--SSCEEEEEEEEESSTTSSEEEEEECECSEE
T ss_pred EEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Eeec--cccCcceEEEEeCCCCceeeccccccccCC
Confidence 55555 4589776543211 1122244458888887 2111 001122333343 345679888765322
Q ss_pred ceeeEEEE-ECCEEEEEecccCCCCCCCCccccccCeeEEEECC-CCceeeccccccCCCCC-CeEEE-ECCEEEEEcCC
Q 042957 180 RYKCVGVT-WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQ-AGKWDLVARMWQLDIPP-NQIVE-VDNRLFSSGDC 255 (371)
Q Consensus 180 ~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~-~~~~~-~~~~iyv~GG~ 255 (371)
....+.+. -+++|+++-... .. ......+... -.+|+.......+.... ..++. -+++++++...
T Consensus 159 ~~e~~~~~~~dG~l~~~~R~~-~~----------~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 227 (275)
T PF13088_consen 159 ECEPSIVELPDGRLLAVFRTE-GN----------DDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNN 227 (275)
T ss_dssp EEEEEEEEETTSEEEEEEEEC-SS----------TEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEEC
T ss_pred cceeEEEECCCCcEEEEEEcc-CC----------CcEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEEC
Confidence 23333333 367888887543 21 1233444444 34798765322222111 11222 25677777663
Q ss_pred CCCc-cCeEEEEeCCCCceEee
Q 042957 256 LKAW-KGHIESYDGELNMWDEV 276 (371)
Q Consensus 256 ~~~~-~~~~~~yd~~~~~W~~~ 276 (371)
.... .-.+.+-.-...+|..+
T Consensus 228 ~~~r~~l~l~~S~D~g~tW~~~ 249 (275)
T PF13088_consen 228 PDGRSNLSLYVSEDGGKTWSRP 249 (275)
T ss_dssp SSTSEEEEEEEECTTCEEEEEE
T ss_pred CCCCCceEEEEEeCCCCcCCcc
Confidence 2222 22343333347889987
No 164
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=72.59 E-value=83 Score=29.31 Aligned_cols=108 Identities=11% Similarity=0.244 Sum_probs=62.1
Q ss_pred eeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCcee--eEEEEECCEEEEEecccCCCCCCCCcc
Q 042957 133 FACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYK--CVGVTWQGKIHVVSGFAQRADSDGSVH 209 (371)
Q Consensus 133 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~ 209 (371)
|+++.. +..+.+-||-+ ...++|+..+..|--. ++.-... .....+++.+...|+..+
T Consensus 68 Favsl~P~~~l~aTGGgD--------D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG--------- 128 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGD--------DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG--------- 128 (399)
T ss_pred EEEEeCCCCceEEecCCC--------ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc---------
Confidence 333333 77888888876 4678999988875322 2222222 233456888888887664
Q ss_pred ccccCeeEEEECCC--CceeeccccccCCCCCCeEEEE-CCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 210 FTERSSAEVYDTQA--GKWDLVARMWQLDIPPNQIVEV-DNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 210 ~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
.+.+++..+ .+|.....+..-. -+.-. ...|++.|-... .+|.|.+.+..
T Consensus 129 -----~v~v~~~stg~~~~~~~~e~~die----Wl~WHp~a~illAG~~DG----svWmw~ip~~~ 181 (399)
T KOG0296|consen 129 -----KVLVFKVSTGGEQWKLDQEVEDIE----WLKWHPRAHILLAGSTDG----SVWMWQIPSQA 181 (399)
T ss_pred -----cEEEEEcccCceEEEeecccCceE----EEEecccccEEEeecCCC----cEEEEECCCcc
Confidence 455665554 4576653332110 11111 345666665444 49999888853
No 165
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.54 E-value=99 Score=30.14 Aligned_cols=155 Identities=13% Similarity=0.032 Sum_probs=79.2
Q ss_pred eEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEc
Q 042957 68 FSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAG 146 (371)
Q Consensus 68 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~G 146 (371)
++++.. .+++++.|+.+ ..|...|+.+.+-.+.-.............-++.+++.+
T Consensus 250 ~~~~f~p~g~~i~Sgs~D-----------------------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDD-----------------------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EEEEecCCCCEEEEecCC-----------------------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 455544 35788888774 567777877744333222122222333344477888887
Q ss_pred CCCCCCCCCCCceEEEEeCCCCceE---eCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCC
Q 042957 147 GKSNLFSAKGTASAEVYHPELDQWT---PLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQA 223 (371)
Q Consensus 147 G~~~~~~~~~~~~~~~yd~~t~~W~---~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t 223 (371)
.++ ..+.+||..+..-. .+...........+....+..|++.+..+ +.+-.||+..
T Consensus 307 s~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d-------------~~~~~w~l~~ 365 (456)
T KOG0266|consen 307 SYD--------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD-------------RTLKLWDLRS 365 (456)
T ss_pred CCC--------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC-------------CeEEEEEccC
Confidence 664 46889999887732 33322222111222233344444443322 3566677765
Q ss_pred Cceeec-cccccC-CCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 224 GKWDLV-ARMWQL-DIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 224 ~~W~~~-~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
..-... ...... ....+.+-..+++..+.|.... .++.||+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~----~v~~~~~~s 410 (456)
T KOG0266|consen 366 GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG----SVYVWDSSS 410 (456)
T ss_pred CcceeeecccCCcceeEecccccCCCCeEEEEeCCc----eEEEEeCCc
Confidence 432211 111111 1111122234667777766555 499999987
No 166
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=71.55 E-value=1e+02 Score=29.84 Aligned_cols=106 Identities=12% Similarity=0.005 Sum_probs=56.4
Q ss_pred CceEEEEeCCCCceEeCCCCCCCceeeEEEEECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccC
Q 042957 157 TASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQL 235 (371)
Q Consensus 157 ~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 235 (371)
..+++++|..+.+=.++......-. +..-.-+| +|+....+.+ ...++++|++...=+++..-...
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G------------~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGG------------RPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred CccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCC------------CcceEEECCCCCceeEeeccCCC
Confidence 4679999998876333333222222 22233344 4544432222 24789999988876555322211
Q ss_pred CCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc-eEeecC
Q 042957 236 DIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM-WDEVNG 278 (371)
Q Consensus 236 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~-W~~~~~ 278 (371)
.. .....-+++.+++-+.... .-++..+|+.++. |+.+..
T Consensus 328 ~~--~p~~SpdG~~i~~~~~~~g-~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 328 NS--NPVWSPDGDKIVFESSSGG-QWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred Cc--CccCCCCCCEEEEEeccCC-ceeeEEeccCCCCcEEEccc
Confidence 11 1122334444444333211 1469999998888 988843
No 167
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=71.01 E-value=89 Score=28.97 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred CceEEEEeCCCCceEeCCC--CCCCc-eeeEEEEECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccc
Q 042957 157 TASAEVYHPELDQWTPLPN--MSTLR-YKCVGVTWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARM 232 (371)
Q Consensus 157 ~~~~~~yd~~t~~W~~~~~--~p~~~-~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 232 (371)
..++..|+...+.-....+ ++.+. -.|.+..-+++ .|++.-.+.. -.++.||....+.+.++..
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st------------V~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST------------VDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE------------EEEEEEcCCCceEEEeeee
Confidence 5678899888665544322 22222 22333333444 8888865532 2567788887888777644
No 168
>PRK13684 Ycf48-like protein; Provisional
Probab=70.76 E-value=90 Score=28.97 Aligned_cols=171 Identities=10% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCceeccCCCCcccccccccceEEEEEC-CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecC
Q 042957 46 SNNTWSHVSHIPDLLENHVLKGFSIVSLG-DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCA 124 (371)
Q Consensus 46 ~~~~W~~~~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 124 (371)
....|++.. ++.. .....+...+ ++.|++|-. ..+++=.-.-.+|++..
T Consensus 33 ~~~~W~~~~-~~~~-----~~l~~v~F~d~~~g~avG~~------------------------G~il~T~DgG~tW~~~~ 82 (334)
T PRK13684 33 SSSPWQVID-LPTE-----ANLLDIAFTDPNHGWLVGSN------------------------RTLLETNDGGETWEERS 82 (334)
T ss_pred cCCCcEEEe-cCCC-----CceEEEEEeCCCcEEEEECC------------------------CEEEEEcCCCCCceECc
Confidence 446698875 3311 1233555555 567877632 22333222346898864
Q ss_pred C-CCCCCCC-eeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCC-CCCceeeEEEEE-CCEEEEEecccC
Q 042957 125 P-LSVPRYD-FACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNM-STLRYKCVGVTW-QGKIHVVSGFAQ 200 (371)
Q Consensus 125 ~-~~~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~~~~~~~~~~-~~~lyv~GG~~~ 200 (371)
. ++..... .++...++..|+.|.. ..++.=+-.-.+|+++... ..+.....+..+ ++.+++.|..
T Consensus 83 ~~~~~~~~~l~~v~~~~~~~~~~G~~---------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-- 151 (334)
T PRK13684 83 LDLPEENFRLISISFKGDEGWIVGQP---------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-- 151 (334)
T ss_pred cCCcccccceeeeEEcCCcEEEeCCC---------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc--
Confidence 3 3322222 2333335556666432 2244433344689988531 111111222223 3456666521
Q ss_pred CCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEE-eCCCCceEee
Q 042957 201 RADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESY-DGELNMWDEV 276 (371)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~y-d~~~~~W~~~ 276 (371)
..+++-+-.-.+|+.+....... ...+....+..++..|... .++.- |-...+|+.+
T Consensus 152 -------------G~i~~S~DgG~tW~~~~~~~~g~--~~~i~~~~~g~~v~~g~~G----~i~~s~~~gg~tW~~~ 209 (334)
T PRK13684 152 -------------GAIYRTTDGGKNWEALVEDAAGV--VRNLRRSPDGKYVAVSSRG----NFYSTWEPGQTAWTPH 209 (334)
T ss_pred -------------ceEEEECCCCCCceeCcCCCcce--EEEEEECCCCeEEEEeCCc----eEEEEcCCCCCeEEEe
Confidence 23444444567899886433221 1234444444444333222 24432 4445679988
No 169
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=69.02 E-value=83 Score=27.86 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCcee--eEEEEECCEEEEEecccCCCCCCCCccccccCee
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYK--CVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSA 216 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v 216 (371)
+++.++.+|.. .+-.||..++.=..+...-..... ..+...+++....||.+ ..+
T Consensus 51 dk~~LAaa~~q---------hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD--------------gt~ 107 (311)
T KOG0315|consen 51 DKKDLAAAGNQ---------HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED--------------GTV 107 (311)
T ss_pred CcchhhhccCC---------eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC--------------ceE
Confidence 55666666763 478899887653222221112122 22235678877777655 356
Q ss_pred EEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 217 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
-++|++.-.-.+.-..+ .....++..-++--+|-|..+. .|+++|+.++.-...
T Consensus 108 kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg---~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 108 KIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSG---NIRVWDLGENSCTHE 161 (311)
T ss_pred EEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCC---cEEEEEccCCccccc
Confidence 77888774333332222 2223455555554444444332 599999999866553
No 170
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.34 E-value=95 Score=28.27 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=90.9
Q ss_pred eecCCCCCC--CCCeeEEEECCEEEEEcCCCCCC--------------CCCCCceEEEEeCCCCc----eEeCCCCCCCc
Q 042957 121 TRCAPLSVP--RYDFACTVCDNKIYVAGGKSNLF--------------SAKGTASAEVYHPELDQ----WTPLPNMSTLR 180 (371)
Q Consensus 121 ~~~~~~~~~--r~~~~~~~~~~~lyv~GG~~~~~--------------~~~~~~~~~~yd~~t~~----W~~~~~~p~~~ 180 (371)
+.+.+.|.. -.+-++..+++.|| |||+-... ....-+-++.||.++++ |++--.-+ .
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--T 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--c
Confidence 345544422 33456666777777 67763210 11123568999998876 54432211 1
Q ss_pred eeeEE----E---EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEc
Q 042957 181 YKCVG----V---TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSG 253 (371)
Q Consensus 181 ~~~~~----~---~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~G 253 (371)
..+. . -++++|++.-+-. .. ---++..|.+++.-+.+...|... ++...+..++-+
T Consensus 103 -~WaGEVSdIlYdP~~D~LLlAR~DG-h~----------nLGvy~ldr~~g~~~~L~~~ps~K----G~~~~D~a~F~i- 165 (339)
T PF09910_consen 103 -KWAGEVSDILYDPYEDRLLLARADG-HA----------NLGVYSLDRRTGKAEKLSSNPSLK----GTLVHDYACFGI- 165 (339)
T ss_pred -ccccchhheeeCCCcCEEEEEecCC-cc----------eeeeEEEcccCCceeeccCCCCcC----ceEeeeeEEEec-
Confidence 1111 1 2478888775322 21 135788899999888887666542 344455555544
Q ss_pred CCCCCccCeEEEEeCCCCce--EeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEE
Q 042957 254 DCLKAWKGHIESYDGELNMW--DEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFL 318 (371)
Q Consensus 254 G~~~~~~~~~~~yd~~~~~W--~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 318 (371)
-.-......+.+||+.+++| +..+-. ..+. +-+...|....++.+.+++|.|
T Consensus 166 ~~~~~g~~~i~~~Dli~~~~~~e~f~~~--~s~D-----------g~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 166 NNFHKGVSGIHCLDLISGKWVIESFDVS--LSVD-----------GGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred cccccCCceEEEEEccCCeEEEEecccc--cCCC-----------CCceEeeccccEEEEeeeEEEE
Confidence 21122346799999999999 433211 1111 1122345566677788887765
No 171
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=67.23 E-value=1.1e+02 Score=28.68 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=62.6
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
+.+..+|..+.+ .+...+... .|| .+.+- +..+|+.-.+.... ...+....+.+||+.
T Consensus 27 ~~v~ViD~~~~~--v~g~i~~G~--~P~---~~~spDg~~lyva~~~~~R~--------------~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLGMTDGGF--LPN---PVVASDGSFFAHASTVYSRI--------------ARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCE--EEEEEEccC--CCc---eeECCCCCEEEEEecccccc--------------ccCCCCCEEEEEECc
Confidence 679999988855 334333221 122 34443 46899987743111 134557889999999
Q ss_pred CCeeee-cCCCCCCCC-------CeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe
Q 042957 117 SNEWTR-CAPLSVPRY-------DFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP 172 (371)
Q Consensus 117 ~~~W~~-~~~~~~~r~-------~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~ 172 (371)
+.+=.. ++..+.||. .+++..-+..||+. .....+.+.+.|..+.+--.
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~-------n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY-------QFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEe-------cCCCCCEEEEEECCCCcEEE
Confidence 887543 333344441 22233334567776 22335789999999876544
No 172
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=64.09 E-value=1.2e+02 Score=27.71 Aligned_cols=101 Identities=8% Similarity=0.074 Sum_probs=56.0
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
+.+..||..+++-.+.-.+..-- .....-.......+.+-. +...++-..+..+
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG-----~~~~~Fth~~~~~i~sSt---------------------k~d~tIryLsl~d 89 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYG-----VDLACFTHHSNTVIHSST---------------------KEDDTIRYLSLHD 89 (311)
T ss_pred CeEEEEEcCCCceeeEeeccccc-----ccEEEEecCCceEEEccC---------------------CCCCceEEEEeec
Confidence 46889999988855544443211 111222223333333322 2235677778888
Q ss_pred CeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe
Q 042957 118 NEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP 172 (371)
Q Consensus 118 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~ 172 (371)
|+..+.=+-...+...-.+.-.+..|+-|+.+ +.+..||+.+.+.+-
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D--------~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLD--------KTVRLWDLRVKKCQG 136 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccC--------CeEEeeEecCCCCce
Confidence 88766543333333333333345788888876 468889988766543
No 173
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.91 E-value=1.2e+02 Score=27.72 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=75.8
Q ss_pred cceEEEEECCCCe----eeecCCCCCCCCC-eeEEE---ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCC
Q 042957 107 LAWVLRYNVKSNE----WTRCAPLSVPRYD-FACTV---CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMST 178 (371)
Q Consensus 107 ~~~v~~yd~~~~~----W~~~~~~~~~r~~-~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~ 178 (371)
.+.+..||...++ |.+--.-+...++ -+=.. ++++|++.-+-.. . ---++..|.++..-+.+..-|.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh----~-nLGvy~ldr~~g~~~~L~~~ps 151 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH----A-NLGVYSLDRRTGKAEKLSSNPS 151 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc----c-eeeeEEEcccCCceeeccCCCC
Confidence 5678999988876 6553322211111 11112 3678888754321 1 1237778888888888876665
Q ss_pred CceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce--eeccccccC------CCCCCeEEEECCEEE
Q 042957 179 LRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW--DLVARMWQL------DIPPNQIVEVDNRLF 250 (371)
Q Consensus 179 ~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~------~~~~~~~~~~~~~iy 250 (371)
.+. +.+++...|-+ ..... ....+++||+.+++| +....-.+. +...-.++...++++
T Consensus 152 ~KG---~~~~D~a~F~i--~~~~~---------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~f 217 (339)
T PF09910_consen 152 LKG---TLVHDYACFGI--NNFHK---------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLF 217 (339)
T ss_pred cCc---eEeeeeEEEec--ccccc---------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEE
Confidence 532 23444444433 22222 346899999999999 443211111 111114666777777
Q ss_pred EE-cCCCCCccCeEEEEeCCC
Q 042957 251 SS-GDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 251 v~-GG~~~~~~~~~~~yd~~~ 270 (371)
.| +| .+.+.||..
T Consensus 218 aF~rG-------Gi~vgnP~~ 231 (339)
T PF09910_consen 218 AFVRG-------GIFVGNPYN 231 (339)
T ss_pred EEEec-------cEEEeCCCC
Confidence 65 22 366777763
No 174
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=63.24 E-value=90 Score=31.00 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=31.8
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEEEE--CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTW--QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW 226 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W 226 (371)
.+++++|++.++|-. ++.......-++.+ -..|+.+|+.. ..|+.+|+.+..-
T Consensus 155 ~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~--------------g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED--------------GVVEFWDPRDKSR 209 (703)
T ss_pred cceEEEEcccccccc--ccccccccceeeeecCccceEEecccC--------------ceEEEecchhhhh
Confidence 469999999988743 22221111122222 24578888644 4789999987653
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=63.19 E-value=1.1e+02 Score=27.08 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=65.1
Q ss_pred eeeecCCCC-----CCCCCeeEEE-ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEE--CC
Q 042957 119 EWTRCAPLS-----VPRYDFACTV-CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTW--QG 190 (371)
Q Consensus 119 ~W~~~~~~~-----~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~ 190 (371)
-|+..+|+. .|--+..... -.+.|+..||- ..++..|.++++-++.-.= ..-+-|+++.- ++
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD---------~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD---------GVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC---------eEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc
Confidence 476666553 3333333333 46889988875 3589999999887654210 11133444432 23
Q ss_pred EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeec-cccccCC-----CCCC-eEEEECCEEEEEcCCCCCccCeE
Q 042957 191 KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLV-ARMWQLD-----IPPN-QIVEVDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~-----~~~~-~~~~~~~~iyv~GG~~~~~~~~~ 263 (371)
+|+ -|+.+ .++-++|.+|.+=.++ .+-..+. ...- ++...+...++.||..+ +
T Consensus 170 qil-sG~ED--------------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~-----l 229 (325)
T KOG0649|consen 170 QIL-SGAED--------------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK-----L 229 (325)
T ss_pred cee-ecCCC--------------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc-----e
Confidence 333 34322 3677899998875544 2211111 1110 23344555555555433 5
Q ss_pred EEEeCCCCceEee
Q 042957 264 ESYDGELNMWDEV 276 (371)
Q Consensus 264 ~~yd~~~~~W~~~ 276 (371)
-.+++.+.+=+.+
T Consensus 230 slwhLrsse~t~v 242 (325)
T KOG0649|consen 230 SLWHLRSSESTCV 242 (325)
T ss_pred eEEeccCCCceEE
Confidence 5555555444444
No 176
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=63.02 E-value=1.2e+02 Score=27.58 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=51.8
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
...+-+||..+..=..+..--.+- .+..-......+|.||++ ..+.++|+....- +...-.+..-.++.
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i-~ci~~~~~~~~vIsgsWD--------~~ik~wD~R~~~~--~~~~d~~kkVy~~~ 142 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGI-RCIEYSYEVGCVISGSWD--------KTIKFWDPRNKVV--VGTFDQGKKVYCMD 142 (323)
T ss_pred CceEEEEEecCCcceeeccCCCce-EEEEeeccCCeEEEcccC--------ccEEEEecccccc--ccccccCceEEEEe
Confidence 367899999888755554322221 111112345677889997 4688999886221 11122222222333
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK 225 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~ 225 (371)
+ .+.+.|+|+.. ..+..||+.+..
T Consensus 143 v-~g~~LvVg~~~--------------r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 143 V-SGNRLVVGTSD--------------RKVLIYDLRNLD 166 (323)
T ss_pred c-cCCEEEEeecC--------------ceEEEEEccccc
Confidence 4 44445555422 578999998765
No 177
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.52 E-value=81 Score=27.22 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=48.0
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeE
Q 042957 184 VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 263 (371)
.....++.||.--|.-+. +.+.++|+.+.+-..-.+++.+..+.-+++.+++.+|..-=... ..
T Consensus 50 GL~~~~g~i~esTG~yg~------------S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg----va 113 (262)
T COG3823 50 GLEYLDGHILESTGLYGF------------SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG----VA 113 (262)
T ss_pred ceeeeCCEEEEecccccc------------ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc----ee
Confidence 344667888877776543 57899999976543333344345556689999999998842222 36
Q ss_pred EEEeCCCCceEee
Q 042957 264 ESYDGELNMWDEV 276 (371)
Q Consensus 264 ~~yd~~~~~W~~~ 276 (371)
++||+.+ .+++
T Consensus 114 f~~d~~t--~~~l 124 (262)
T COG3823 114 FKYDADT--LEEL 124 (262)
T ss_pred EEEChHH--hhhh
Confidence 6777654 4444
No 178
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=62.49 E-value=45 Score=30.84 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=59.2
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCC
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDI 237 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 237 (371)
..+-+++..|. +.+..+..-+.+-+++.+++++.|-|..+ +++-.||.+.+.-.++-.- ..
T Consensus 340 RTikvW~~st~--efvRtl~gHkRGIAClQYr~rlvVSGSSD--------------ntIRlwdi~~G~cLRvLeG---HE 400 (499)
T KOG0281|consen 340 RTIKVWSTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSD--------------NTIRLWDIECGACLRVLEG---HE 400 (499)
T ss_pred ceEEEEeccce--eeehhhhcccccceehhccCeEEEecCCC--------------ceEEEEeccccHHHHHHhc---hH
Confidence 35667776654 34444555556667788999998887422 6788899888765443211 11
Q ss_pred CCCeEEEECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 238 PPNQIVEVDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 238 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
.---++..+++-+|.|+++++ +.++|+.+
T Consensus 401 eLvRciRFd~krIVSGaYDGk----ikvWdl~a 429 (499)
T KOG0281|consen 401 ELVRCIRFDNKRIVSGAYDGK----IKVWDLQA 429 (499)
T ss_pred HhhhheeecCceeeeccccce----EEEEeccc
Confidence 011367789999999998775 88877765
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=61.44 E-value=1.2e+02 Score=26.88 Aligned_cols=155 Identities=10% Similarity=0.087 Sum_probs=78.8
Q ss_pred ceeccCCCCcccccccccceEEEE--ECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCC
Q 042957 49 TWSHVSHIPDLLENHVLKGFSIVS--LGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPL 126 (371)
Q Consensus 49 ~W~~~~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 126 (371)
-|+...++.....+-|- -.++.. ..|.|+..||- ..+++.|.++++.++.-.
T Consensus 100 lwe~~~P~~~~~~evPe-INam~ldP~enSi~~AgGD------------------------~~~y~~dlE~G~i~r~~r- 153 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPE-INAMWLDPSENSILFAGGD------------------------GVIYQVDLEDGRIQREYR- 153 (325)
T ss_pred hhhhcCccccCcccCCc-cceeEeccCCCcEEEecCC------------------------eEEEEEEecCCEEEEEEc-
Confidence 47777666432111111 113333 36889988875 357888999998766421
Q ss_pred CCCCCCeeEEEEC-CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeC-CC-----CCCCcee-eEEE-EECCEEEEEec
Q 042957 127 SVPRYDFACTVCD-NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPL-PN-----MSTLRYK-CVGV-TWQGKIHVVSG 197 (371)
Q Consensus 127 ~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~-~~-----~p~~~~~-~~~~-~~~~~lyv~GG 197 (371)
...-+-|+++.-+ +.=++.|+.+ ..+-++|.++.+-.++ .+ +-.+..+ ..++ ..+..-.|+||
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~ED--------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg 225 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAED--------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG 225 (325)
T ss_pred CCcceeeeeeecccCcceeecCCC--------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC
Confidence 1122345555422 2233456655 3577888888776543 22 1122221 2233 34445566664
Q ss_pred ccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCC
Q 042957 198 FAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCL 256 (371)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~ 256 (371)
- ..+-.|++...+=+.+-+.| .. . ..+...+..++++|..
T Consensus 226 G---------------p~lslwhLrsse~t~vfpip--a~-v-~~v~F~~d~vl~~G~g 265 (325)
T KOG0649|consen 226 G---------------PKLSLWHLRSSESTCVFPIP--AR-V-HLVDFVDDCVLIGGEG 265 (325)
T ss_pred C---------------CceeEEeccCCCceEEEecc--cc-e-eEeeeecceEEEeccc
Confidence 2 24566777766544443333 22 2 2344445555555543
No 180
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=60.99 E-value=1.5e+02 Score=27.86 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=94.3
Q ss_pred ceeEEeCCCCc--eeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 39 WLASYNPSNNT--WSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 39 ~~~~yd~~~~~--W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
.++++|+.+.+ |.......... ..-.....+++||+-... ..+++||..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~-----~~~~~~~~~G~i~~g~~~------------------------g~~y~ld~~ 129 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQ-----LSGPILGSDGKIYVGSWD------------------------GKLYALDAS 129 (370)
T ss_pred cEEEEeCCCCcEEecccCcCccee-----ccCceEEeCCeEEEeccc------------------------ceEEEEECC
Confidence 68999999988 87654320000 011122337776665332 278999986
Q ss_pred CC--eeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCC--CCCCceeeEEEEECC
Q 042957 117 SN--EWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPN--MSTLRYKCVGVTWQG 190 (371)
Q Consensus 117 ~~--~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~--~p~~~~~~~~~~~~~ 190 (371)
+. .|+.-.... ++..-..++.++.+|+.. . ...++.+|..+. .|+.-.+ +....... .+..++
T Consensus 130 ~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s-~--------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~-~~~~~~ 198 (370)
T COG1520 130 TGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT-D--------DGHLYALNADTGTLKWTYETPAPLSLSIYGS-PAIASG 198 (370)
T ss_pred CCcEEEEEecCCC-eEEecCcEEcCcEEEEec-C--------CCeEEEEEccCCcEEEEEecCCccccccccC-ceeecc
Confidence 54 586644332 333444555567777663 1 245788888754 6874332 22222222 236667
Q ss_pred EEEEEecccCCCCCCCCccccccCeeEEEECCCC--ceeeccccccCCCCC-CeEEEECCEEEEEcCC-CCCccCeEEEE
Q 042957 191 KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG--KWDLVARMWQLDIPP-NQIVEVDNRLFSSGDC-LKAWKGHIESY 266 (371)
Q Consensus 191 ~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~-~~~~~~~~~iyv~GG~-~~~~~~~~~~y 266 (371)
.+|+-.-- . . ..++.+|++++ .|......+...... ......+..||+-++. .......+.++
T Consensus 199 ~vy~~~~~-~-~-----------~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l 265 (370)
T COG1520 199 TVYVGSDG-Y-D-----------GILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCL 265 (370)
T ss_pred eEEEecCC-C-c-----------ceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEE
Confidence 77765421 1 1 36788999766 477432222221110 0122334444444441 11122236777
Q ss_pred eCCC--CceEee
Q 042957 267 DGEL--NMWDEV 276 (371)
Q Consensus 267 d~~~--~~W~~~ 276 (371)
|..+ ..|+.-
T Consensus 266 ~~~~G~~~W~~~ 277 (370)
T COG1520 266 DADTGELIWSFP 277 (370)
T ss_pred EcCCCceEEEEe
Confidence 6665 347765
No 181
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=59.35 E-value=46 Score=26.39 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeee---CCeEEEEccee
Q 042957 246 DNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPI---GTHLYFLAGYR 322 (371)
Q Consensus 246 ~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~ 322 (371)
+..++++|-.. .+.+||.++|.=--- .+++.. .....+..+ ...+.++||.+
T Consensus 63 ~~D~LliGt~t-----~llaYDV~~N~d~Fy-----ke~~DG---------------vn~i~~g~~~~~~~~l~ivGGnc 117 (136)
T PF14781_consen 63 GRDCLLIGTQT-----SLLAYDVENNSDLFY-----KEVPDG---------------VNAIVIGKLGDIPSPLVIVGGNC 117 (136)
T ss_pred CcCEEEEeccc-----eEEEEEcccCchhhh-----hhCccc---------------eeEEEEEecCCCCCcEEEECceE
Confidence 34577776543 499999998751111 333333 222222233 45789999985
Q ss_pred ecccccceeeEEEEeecccccccccc
Q 042957 323 MAGELARTMSMVHIFDTAAKSDAWRS 348 (371)
Q Consensus 323 ~~~~~~~~~~~v~~~d~~~~~~~W~~ 348 (371)
+|.-||-+-+..-|+-
T Consensus 118 ----------si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 118 ----------SIQGFDYEGNEIFWTV 133 (136)
T ss_pred ----------EEEEeCCCCcEEEEEe
Confidence 5667777765455654
No 182
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.02 E-value=1.8e+02 Score=27.83 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=70.3
Q ss_pred ceeEEeCCCCceeccCCCCcccccccccceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 39 WLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 39 ~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
.+..+|..+++-... ++.. ++-...+++.. ++.=+|.|+.+ ..+...|...
T Consensus 292 ~~~lwDv~tgd~~~~--y~~~---~~~S~~sc~W~pDg~~~V~Gs~d-----------------------r~i~~wdlDg 343 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHL--YPSG---LGFSVSSCAWCPDGFRFVTGSPD-----------------------RTIIMWDLDG 343 (519)
T ss_pred heeeccCCcchhhhh--cccC---cCCCcceeEEccCCceeEecCCC-----------------------CcEEEecCCc
Confidence 366677766663332 2211 11122234444 67778888764 4566666665
Q ss_pred C---eeeecCCCCCCCCCeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEE
Q 042957 118 N---EWTRCAPLSVPRYDFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIH 193 (371)
Q Consensus 118 ~---~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~ly 193 (371)
+ .|+-+.. |+..-.+... +.++++++ .+ ..+..|+.++..-+.+-....+.... ...-++++.
T Consensus 344 n~~~~W~gvr~---~~v~dlait~Dgk~vl~v~-~d--------~~i~l~~~e~~~dr~lise~~~its~-~iS~d~k~~ 410 (519)
T KOG0293|consen 344 NILGNWEGVRD---PKVHDLAITYDGKYVLLVT-VD--------KKIRLYNREARVDRGLISEEQPITSF-SISKDGKLA 410 (519)
T ss_pred chhhccccccc---ceeEEEEEcCCCcEEEEEe-cc--------cceeeechhhhhhhccccccCceeEE-EEcCCCcEE
Confidence 4 5866654 4444333334 55666664 22 35777777665444333333333322 235577888
Q ss_pred EEecccCCCCCCCCccccccCeeEEEECCC
Q 042957 194 VVSGFAQRADSDGSVHFTERSSAEVYDTQA 223 (371)
Q Consensus 194 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~t 223 (371)
++.=.. ..+..+|++.
T Consensus 411 LvnL~~--------------qei~LWDl~e 426 (519)
T KOG0293|consen 411 LVNLQD--------------QEIHLWDLEE 426 (519)
T ss_pred EEEccc--------------CeeEEeecch
Confidence 887322 5688899983
No 183
>PRK01029 tolB translocation protein TolB; Provisional
Probab=56.73 E-value=1.9e+02 Score=27.88 Aligned_cols=29 Identities=10% Similarity=-0.065 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 246 DNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 246 ~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
+++|+....... ..++++||+++.+.+.+
T Consensus 338 G~~Laf~~~~~g--~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 338 GKKIAFCSVIKG--VRQICVYDLATGRDYQL 366 (428)
T ss_pred CCEEEEEEcCCC--CcEEEEEECCCCCeEEc
Confidence 344554433221 24699999999998888
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.49 E-value=1.9e+02 Score=27.35 Aligned_cols=93 Identities=11% Similarity=0.024 Sum_probs=49.5
Q ss_pred ceEEEEeCCCCceEeCCCCC---CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc
Q 042957 158 ASAEVYHPELDQWTPLPNMS---TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ 234 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p---~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 234 (371)
..+-.||+..++ +.+...+ .+..+.+. .-++...++|- ....+..||..+..--...--..
T Consensus 226 hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l-~p~gn~Iy~gn--------------~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 226 HQVRLYDTRHQR-RPVAQFDFLENPISSTGL-TPSGNFIYTGN--------------TKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred eeEEEecCcccC-cceeEeccccCcceeeee-cCCCcEEEEec--------------ccchhheecccCceeeccccCCc
Confidence 457889988654 3333222 22222222 22344333442 23467889998876433321111
Q ss_pred CCCCCCeEEEECC-EEEEEcCCCCCccCeEEEEeCCCC
Q 042957 235 LDIPPNQIVEVDN-RLFSSGDCLKAWKGHIESYDGELN 271 (371)
Q Consensus 235 ~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~yd~~~~ 271 (371)
... ...+.+..+ .++..+|.+. .+.+||.+++
T Consensus 290 tGs-irsih~hp~~~~las~GLDR----yvRIhD~ktr 322 (412)
T KOG3881|consen 290 TGS-IRSIHCHPTHPVLASCGLDR----YVRIHDIKTR 322 (412)
T ss_pred cCC-cceEEEcCCCceEEeeccce----eEEEeecccc
Confidence 111 123444444 6888888765 4999999983
No 185
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=55.38 E-value=24 Score=21.00 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=15.8
Q ss_pred eEEEECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 241 QIVEVDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 241 ~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
+.++.++.+|+.+.. ..++++|+++
T Consensus 16 ~~~v~~g~vyv~~~d-----g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD-----GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT-----SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC-----CEEEEEeCCC
Confidence 456778888887652 2599999864
No 186
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=53.28 E-value=1.4e+02 Score=25.19 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=41.9
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT 187 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~ 187 (371)
..+..||.... .+-.++....+.....-+++.+++||..+. ...+++||.. +.+.+............=.
T Consensus 83 ~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~--~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 83 AKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGNL-----NGDLEFWDVR--KKKKISTFEHSDATDVEWS 152 (194)
T ss_pred cccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccCC-----CcEEEEEECC--CCEEeeccccCcEEEEEEc
Confidence 36888888533 333333322333334457888888887531 2578999988 4455544333222111112
Q ss_pred ECCEEEEEec
Q 042957 188 WQGKIHVVSG 197 (371)
Q Consensus 188 ~~~~lyv~GG 197 (371)
-+++.++...
T Consensus 153 PdGr~~~ta~ 162 (194)
T PF08662_consen 153 PDGRYLATAT 162 (194)
T ss_pred CCCCEEEEEE
Confidence 2555555543
No 187
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=51.87 E-value=48 Score=32.25 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=43.2
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEE-CCEEEEEcCCCCCccCeEEE
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV-DNRLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 265 (371)
.-+++-.|+||.. .++-++|+.+-+=.....++.......+.++. +.++... -... ..|.+
T Consensus 474 ~pdgrtLivGGea--------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFs-ccsd---GnI~v 535 (705)
T KOG0639|consen 474 LPDGRTLIVGGEA--------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS-CCSD---GNIAV 535 (705)
T ss_pred cCCCceEEecccc--------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee-eccC---CcEEE
Confidence 3477888899852 57888999988776666676643333344443 4444433 2222 24999
Q ss_pred EeCCCCce
Q 042957 266 YDGELNMW 273 (371)
Q Consensus 266 yd~~~~~W 273 (371)
||+.+.+-
T Consensus 536 wDLhnq~~ 543 (705)
T KOG0639|consen 536 WDLHNQTL 543 (705)
T ss_pred EEccccee
Confidence 99988653
No 188
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=51.31 E-value=1.3e+02 Score=24.41 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=47.2
Q ss_pred EEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCC-CCC--eEE-EECCEEEEEcCCCCCccC
Q 042957 186 VTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDI-PPN--QIV-EVDNRLFSSGDCLKAWKG 261 (371)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~-~~~--~~~-~~~~~iyv~GG~~~~~~~ 261 (371)
+.++|.+|=++-...... ...+..||+.+.+.....++|.... ... .+. +.+++|-++--......-
T Consensus 2 V~vnG~~hW~~~~~~~~~---------~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~ 72 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---------KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKI 72 (164)
T ss_pred EEECCEEEeeEEecCCCC---------ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccE
Confidence 467888887775444321 1268999999999943334443322 111 232 236778777432222234
Q ss_pred eEEEEe---CCCCceEee
Q 042957 262 HIESYD---GELNMWDEV 276 (371)
Q Consensus 262 ~~~~yd---~~~~~W~~~ 276 (371)
+||+.+ -....|+++
T Consensus 73 ~IWvm~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 73 EIWVMKKYGYGKESWTKL 90 (164)
T ss_pred EEEEEeeeccCcceEEEE
Confidence 677765 236789997
No 189
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=51.27 E-value=1.9e+02 Score=26.27 Aligned_cols=173 Identities=14% Similarity=0.058 Sum_probs=80.6
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEEC-CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLG-DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVK 116 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 116 (371)
|.+-.|+..+.+=+....+......|.-+-.++-.++ ++|.--.|- ..+-..|++
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------------------------~TCalWDie 174 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------------------------MTCALWDIE 174 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC------------------------ceEEEEEcc
Confidence 6688898886644433333322323433333333344 344433332 356666877
Q ss_pred CCeeeecCCCCCC-CCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEE
Q 042957 117 SNEWTRCAPLSVP-RYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVV 195 (371)
Q Consensus 117 ~~~W~~~~~~~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~ 195 (371)
+.+=...-.-... ....++...+.+.|+-||.+. ....+|.......+.-.-...-.......-++.-|+.
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~--------~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK--------SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEeccccc--------ceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 7764332110000 001111112788999999873 4677888776544321111111111111224445555
Q ss_pred ecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEE-EECCEEEEEcCCC
Q 042957 196 SGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIV-EVDNRLFSSGDCL 256 (371)
Q Consensus 196 GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~~iyv~GG~~ 256 (371)
|..+ ...-.||++.++=..+-.......+..+++ ..-++|++.|..+
T Consensus 247 GSDD--------------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 247 GSDD--------------ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cCCC--------------ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 5322 345679998875333322222222222333 3467777776443
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=51.01 E-value=2.2e+02 Score=26.88 Aligned_cols=196 Identities=11% Similarity=0.070 Sum_probs=87.8
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCC---CCCCCcee
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLP---NMSTLRYK 182 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~ 182 (371)
..++|..|....+=.....+...+.-|-...- +++-|+.+-.. .+.+-+.|.++++-...- ..|.+...
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-------sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-------SNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-------GTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-------cceeEEEeeccceEEEEeecccccccccc
Confidence 67788888655432222222334444444443 34444443222 357888898876443221 11111111
Q ss_pred eEEEEEC-CEEEEEecccCCCCCCCCccccccCeeEEEECC----CCceeeccccccCCCCCCeEEEEC--CEEEEEcCC
Q 042957 183 CVGVTWQ-GKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQ----AGKWDLVARMWQLDIPPNQIVEVD--NRLFSSGDC 255 (371)
Q Consensus 183 ~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~----t~~W~~~~~~~~~~~~~~~~~~~~--~~iyv~GG~ 255 (371)
....... +-++..+|..... -...--|+. ...|+.+..++....+ ..+.... ..+|+-- .
T Consensus 222 ~~~php~~g~vw~~~~~~~~~-----------~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~-~ 288 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFA-----------IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDT-F 288 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSE-----------EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE--T
T ss_pred ccccCCCcceEEeecccccee-----------cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeec-c
Confidence 1111112 3355555543211 122333443 3679888877765443 3344443 3455531 1
Q ss_pred CCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeee-CCeEEEEcceeecccccceeeEE
Q 042957 256 LKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPI-GTHLYFLAGYRMAGELARTMSMV 334 (371)
Q Consensus 256 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~v 334 (371)
.+...+.+.++|.++. +.+ ..+... +..|..|.-..- |.++|+--...+ ..|
T Consensus 289 ~~~~~~~v~viD~~tl--~~~-----~~i~~~------------~~~~~~h~ef~~dG~~v~vS~~~~~--------~~i 341 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTL--KVV-----KTITPG------------PGKRVVHMEFNPDGKEVWVSVWDGN--------GAI 341 (369)
T ss_dssp T-SSHT-EEEEECCGT--EEE-----E-HHHH------------HT--EEEEEE-TTSSEEEEEEE--T--------TEE
T ss_pred CCCCCceEEEEECcCc--cee-----EEEecc------------CCCcEeccEECCCCCEEEEEEecCC--------CEE
Confidence 1112457999999987 333 222110 111334444433 447777543221 178
Q ss_pred EEeecccccccccccCccc
Q 042957 335 HIFDTAAKSDAWRSFEPIV 353 (371)
Q Consensus 335 ~~~d~~~~~~~W~~~~~~p 353 (371)
.+||.. +|+.+..+|
T Consensus 342 ~v~D~~----Tl~~~~~i~ 356 (369)
T PF02239_consen 342 VVYDAK----TLKEKKRIP 356 (369)
T ss_dssp EEEETT----TTEEEEEEE
T ss_pred EEEECC----CcEEEEEEE
Confidence 899998 566666655
No 191
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.27 E-value=43 Score=30.52 Aligned_cols=83 Identities=19% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCceeeccccccCC-CCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCc
Q 042957 223 AGKWDLVARMWQLD-IPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPI 301 (371)
Q Consensus 223 t~~W~~~~~~~~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 301 (371)
..+|+..+....+. ...-.++++++...+.||.+. .|.+||...+. ++ ..+..+ .+|++....++|.
T Consensus 28 s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDe----tI~IYDm~k~~--ql-----g~ll~H-agsitaL~F~~~~ 95 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDE----TIHIYDMRKRK--QL-----GILLSH-AGSITALKFYPPL 95 (362)
T ss_pred ccceeeeccccccccccceeEEEecceeEeccCCCC----cEEEEeccchh--hh-----cceecc-ccceEEEEecCCc
Confidence 34566555443222 111246677888778887666 49999998753 33 455444 4566666666665
Q ss_pred eeeeeeEeeeCCeEEE
Q 042957 302 QRLYLTMAPIGTHLYF 317 (371)
Q Consensus 302 ~r~~~~~~~~~~~l~v 317 (371)
...+.-++.-|++|.+
T Consensus 96 S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 96 SKSHLLSGSDDGHIII 111 (362)
T ss_pred chhheeeecCCCcEEE
Confidence 5443334444444443
No 192
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=49.92 E-value=2e+02 Score=26.17 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=36.0
Q ss_pred CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEE-EECCCCeeeecCCCCCCCCCeeEEEE------CCEEEEEc
Q 042957 74 GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLR-YNVKSNEWTRCAPLSVPRYDFACTVC------DNKIYVAG 146 (371)
Q Consensus 74 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~r~~~~~~~~------~~~lyv~G 146 (371)
++..++-||.+. .=-+|. |.-..|.|..- +|..|++ ++..++.-
T Consensus 58 ~gs~~aSgG~Dr---------------------~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 58 DGSCFASGGSDR---------------------AIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred CCCeEeecCCcc---------------------eEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEe
Confidence 678888899851 112343 44455666433 4555543 34444444
Q ss_pred CCCCCCCCCCCceEEEEeCCCCceE
Q 042957 147 GKSNLFSAKGTASAEVYHPELDQWT 171 (371)
Q Consensus 147 G~~~~~~~~~~~~~~~yd~~t~~W~ 171 (371)
|.+ +.+..||.++++-.
T Consensus 109 gtD--------k~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 109 GTD--------KTVRGWDAETGKRI 125 (338)
T ss_pred cCC--------ceEEEEecccceee
Confidence 544 57899999988653
No 193
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=47.76 E-value=2.9e+02 Score=27.30 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=42.5
Q ss_pred CCCceeeEEEE-ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEE-CCEEEEEcC
Q 042957 177 STLRYKCVGVT-WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV-DNRLFSSGD 254 (371)
Q Consensus 177 p~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG 254 (371)
|......++++ .++...++||..+ .+.+|.+....-.....+..-+.....++.. +++.+..|-
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dg--------------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDG--------------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccc--------------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 33333334443 4677888998663 4888888776543332222222222223333 445555544
Q ss_pred CCCCccCeEEEEeCCCCce
Q 042957 255 CLKAWKGHIESYDGELNMW 273 (371)
Q Consensus 255 ~~~~~~~~~~~yd~~~~~W 273 (371)
... .+..||.++++=
T Consensus 507 a~r----kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 507 ASR----KVVLYDVASREV 521 (603)
T ss_pred cCC----cEEEEEcccCce
Confidence 333 488898887654
No 194
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=1.9e+02 Score=25.05 Aligned_cols=158 Identities=14% Similarity=0.079 Sum_probs=92.3
Q ss_pred eEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCC-CCCCCeeEEEECCEEEEEc
Q 042957 68 FSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLS-VPRYDFACTVCDNKIYVAG 146 (371)
Q Consensus 68 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~lyv~G 146 (371)
.++...++++|.--|.. ..+.+.++|..+.+=..-..++ ....+-+.+..++.+|..-
T Consensus 49 QGL~~~~g~i~esTG~y---------------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT 107 (262)
T COG3823 49 QGLEYLDGHILESTGLY---------------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT 107 (262)
T ss_pred cceeeeCCEEEEecccc---------------------ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE
Confidence 36778889999988874 3567889999866532222222 3345567888899999985
Q ss_pred CCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce
Q 042957 147 GKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW 226 (371)
Q Consensus 147 G~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W 226 (371)
=.+ .-.+.||..+ .+++...+..-.+...+.-+..|.+-.|. ..+.--||++=.=
T Consensus 108 w~e--------gvaf~~d~~t--~~~lg~~~y~GeGWgLt~d~~~LimsdGs---------------atL~frdP~tfa~ 162 (262)
T COG3823 108 WKE--------GVAFKYDADT--LEELGRFSYEGEGWGLTSDDKNLIMSDGS---------------ATLQFRDPKTFAE 162 (262)
T ss_pred ecc--------ceeEEEChHH--hhhhcccccCCcceeeecCCcceEeeCCc---------------eEEEecCHHHhhh
Confidence 443 2457777654 46666666666677777666666655542 2344445554221
Q ss_pred e---eccccccCCCCCCeEEEECCEEEEEcCCCCCc-cCeEEEEeCCCCc---eEee
Q 042957 227 D---LVARMWQLDIPPNQIVEVDNRLFSSGDCLKAW-KGHIESYDGELNM---WDEV 276 (371)
Q Consensus 227 ~---~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~yd~~~~~---W~~~ 276 (371)
. .+..-..+...-...-.+++.+|. +-+ .+.|.+.||++.+ |-.+
T Consensus 163 ~~~v~VT~~g~pv~~LNELE~VdG~lyA-----NVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 163 LDTVQVTDDGVPVSKLNELEWVDGELYA-----NVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred cceEEEEECCeecccccceeeeccEEEE-----eeeeecceEEEcCCCCcEEEEEEc
Confidence 1 111111111111234556666664 222 3568889999876 6666
No 195
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.60 E-value=3.2e+02 Score=26.92 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCce-eeEEEEECCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRY-KCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
++..+++|-.+ ..+++||.++. +.+..|..... ..++...++.+...|... ..+.
T Consensus 228 ~G~~LavG~~~--------g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~~~~lssGsr~--------------~~I~ 283 (484)
T KOG0305|consen 228 DGSHLAVGTSD--------GTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWNSSVLSSGSRD--------------GKIL 283 (484)
T ss_pred CCCEEEEeecC--------CeEEEEehhhc--cccccccCCcCceeEEEeccCceEEEecCC--------------CcEE
Confidence 46677776553 46888988765 33333333122 223345677788888654 3456
Q ss_pred EEECCCCceeeccccccCCCCCCeEEE-ECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 218 VYDTQAGKWDLVARMWQLDIPPNQIVE-VDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 218 ~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
.+|.....=. +..+..-+...+++.. .+++.+..||.++. +.+||...
T Consensus 284 ~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnDN~----~~Iwd~~~ 332 (484)
T KOG0305|consen 284 NHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGNDNV----VFIWDGLS 332 (484)
T ss_pred EEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCccc----eEeccCCC
Confidence 6666543211 1111100000112222 25566677776664 88988843
No 196
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=44.35 E-value=2e+02 Score=24.36 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=46.0
Q ss_pred cCCCCCCCCCCCceEEEEeCCCCceEeCC--CCCCCceeeE-EEEEC-CE-EEEEecccCCCCCCCCccccccCeeEEEE
Q 042957 146 GGKSNLFSAKGTASAEVYHPELDQWTPLP--NMSTLRYKCV-GVTWQ-GK-IHVVSGFAQRADSDGSVHFTERSSAEVYD 220 (371)
Q Consensus 146 GG~~~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~~~~~~-~~~~~-~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd 220 (371)
-|............++++|..++.|-.+. +.+ ....+- +.-++ .. ++|+| ...+... --..+++|+
T Consensus 76 egkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~-~k~sPK~i~WiDD~~L~vIIG-~a~GTvS-------~GGnLy~~n 146 (200)
T PF15525_consen 76 EGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNE-EKYSPKYIEWIDDNNLAVIIG-YAHGTVS-------KGGNLYKYN 146 (200)
T ss_pred EcCCCccccccceeEEEEecCCCceEEEEecCcc-cccCCceeEEecCCcEEEEEc-cccceEc-------cCCeEEEEE
Confidence 34433335566789999999988876542 221 122221 23333 34 44555 2222211 125799999
Q ss_pred CCCCceeeccccccC
Q 042957 221 TQAGKWDLVARMWQL 235 (371)
Q Consensus 221 ~~t~~W~~~~~~~~~ 235 (371)
+.++.-+.+......
T Consensus 147 l~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 147 LNTGNLTELYEWKDK 161 (200)
T ss_pred ccCCceeEeeecccc
Confidence 999998888766543
No 197
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=43.89 E-value=1.2e+02 Score=28.39 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=35.7
Q ss_pred CeeEEEECCCCceeeccc-cccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEe
Q 042957 214 SSAEVYDTQAGKWDLVAR-MWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDE 275 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~ 275 (371)
..+-++|++++.-...-. .... ..++++...+=|+|.....+ .+.+||++.|+.-+
T Consensus 173 rtikIwDlatg~LkltltGhi~~---vr~vavS~rHpYlFs~gedk---~VKCwDLe~nkvIR 229 (460)
T KOG0285|consen 173 RTIKIWDLATGQLKLTLTGHIET---VRGVAVSKRHPYLFSAGEDK---QVKCWDLEYNKVIR 229 (460)
T ss_pred ceeEEEEcccCeEEEeecchhhe---eeeeeecccCceEEEecCCC---eeEEEechhhhhHH
Confidence 467889999987543321 1111 12577778888888643332 59999999886543
No 198
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.68 E-value=2.7e+02 Score=28.60 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCC--CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCee
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMS--TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSA 216 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p--~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v 216 (371)
.++-.+.|+.+ ..+-+||..+.+ .+..+. .+-........++.+++.||.+ ++|
T Consensus 588 ~Gr~LaSg~ed--------~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D--------------nsV 643 (707)
T KOG0263|consen 588 CGRYLASGDED--------GLIKIWDLANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGAD--------------NSV 643 (707)
T ss_pred CCceEeecccC--------CcEEEEEcCCCc--chhhhhcccCceeEEEEecCCCEEEecCCC--------------CeE
Confidence 56655566654 358888887753 222221 1111222235689999999855 567
Q ss_pred EEEECCCC
Q 042957 217 EVYDTQAG 224 (371)
Q Consensus 217 ~~yd~~t~ 224 (371)
-.||..+-
T Consensus 644 ~lWD~~~~ 651 (707)
T KOG0263|consen 644 RLWDLTKV 651 (707)
T ss_pred EEEEchhh
Confidence 77776543
No 199
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=43.51 E-value=1.8e+02 Score=23.64 Aligned_cols=127 Identities=9% Similarity=0.004 Sum_probs=64.8
Q ss_pred EEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCce----eeEEE-EECCEEEEEecccCCCCCCCCccc
Q 042957 136 TVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRY----KCVGV-TWQGKIHVVSGFAQRADSDGSVHF 210 (371)
Q Consensus 136 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~----~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~ 210 (371)
+.++|.+|-++-.... .....+-.||..+++.++..++|.... ..... +.+++|-++--....
T Consensus 2 V~vnG~~hW~~~~~~~---~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~--------- 69 (164)
T PF07734_consen 2 VFVNGALHWLAYDENN---DEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDET--------- 69 (164)
T ss_pred EEECCEEEeeEEecCC---CCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCC---------
Confidence 4578889988765431 111269999999999944334453332 23332 337788887432111
Q ss_pred cccCeeEEEE---CCCCceeeccccccCCCCC-------CeEEE-ECCEEEEEcCCCCCc--cCeEEEEeCCCCceEee
Q 042957 211 TERSSAEVYD---TQAGKWDLVARMWQLDIPP-------NQIVE-VDNRLFSSGDCLKAW--KGHIESYDGELNMWDEV 276 (371)
Q Consensus 211 ~~~~~v~~yd---~~t~~W~~~~~~~~~~~~~-------~~~~~-~~~~iyv~GG~~~~~--~~~~~~yd~~~~~W~~~ 276 (371)
..-.|++-+ -....|+++-.+....... ..... -++++++.-...... .+.+++++ +++.-+++
T Consensus 70 -~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~ 146 (164)
T PF07734_consen 70 -SKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEV 146 (164)
T ss_pred -ccEEEEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEc
Confidence 112344433 3377899875433211110 11222 234555542221111 15677887 66666666
No 200
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=42.91 E-value=2.6e+02 Score=25.30 Aligned_cols=223 Identities=12% Similarity=0.045 Sum_probs=112.6
Q ss_pred cceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCC
Q 042957 38 NWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKS 117 (371)
Q Consensus 38 ~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 117 (371)
..+..++...+.|..--......-|..+..-.++..++...+-|+++ ..+...|..+
T Consensus 38 k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD-----------------------~~lrlWDl~~ 94 (315)
T KOG0279|consen 38 KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD-----------------------GTLRLWDLAT 94 (315)
T ss_pred eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc-----------------------ceEEEEEecC
Confidence 44667777777776633222111011111113444467777777774 4566778777
Q ss_pred CeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEE-E-C--CEEE
Q 042957 118 NEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVT-W-Q--GKIH 193 (371)
Q Consensus 118 ~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~-~--~~ly 193 (371)
.+=++.---...-.-..+...+++-++-|-++ +.+-.||...+.=-++..--. |.-..++. . + +-++
T Consensus 95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD--------kTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD--------KTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPII 165 (315)
T ss_pred CcEEEEEEecCCceEEEEecCCCceeecCCCc--------ceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEE
Confidence 54222110011111122223467777777665 356666666553333322111 32222222 1 2 3344
Q ss_pred EEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCce
Q 042957 194 VVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMW 273 (371)
Q Consensus 194 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W 273 (371)
+-+|++ +.+-++|+.+.+-...-. .....-....+..++.+...||.... +..+|+...+=
T Consensus 166 vs~s~D--------------ktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~----~~LwdL~~~k~ 226 (315)
T KOG0279|consen 166 VSASWD--------------KTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGE----AMLWDLNEGKN 226 (315)
T ss_pred EEccCC--------------ceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCce----EEEEEccCCce
Confidence 444433 577888888775433211 11111111234458999999997664 66666665432
Q ss_pred EeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccc
Q 042957 274 DEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAK 342 (371)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~ 342 (371)
+ -.+. ..-.-++++...++..++-+.. .+|-+||+++.
T Consensus 227 --l-----ysl~---------------a~~~v~sl~fspnrywL~~at~---------~sIkIwdl~~~ 264 (315)
T KOG0279|consen 227 --L-----YSLE---------------AFDIVNSLCFSPNRYWLCAATA---------TSIKIWDLESK 264 (315)
T ss_pred --e-----Eecc---------------CCCeEeeEEecCCceeEeeccC---------CceEEEeccch
Confidence 1 1111 1134467777788887776543 35778888865
No 201
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=42.55 E-value=3.2e+02 Score=26.37 Aligned_cols=184 Identities=13% Similarity=0.219 Sum_probs=93.2
Q ss_pred CCCCCCccccceeEEeCCCCceeccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCCCCCCccccccccccc
Q 042957 29 EPGPRSNISNWLASYNPSNNTWSHVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLA 108 (371)
Q Consensus 29 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (371)
.=+.+..+.|.++.+|..-+-=-++.-+.. ..| -+++-.+++.+||+-=+ -..
T Consensus 397 dW~~~de~~N~vYilDe~lnvvGkltGl~~----gER-IYAvRf~gdv~yiVTfr----------------------qtD 449 (603)
T COG4880 397 DWTSEDEPVNAVYILDENLNVVGKLTGLAP----GER-IYAVRFVGDVLYIVTFR----------------------QTD 449 (603)
T ss_pred ccccCCCccceeEEEcCCCcEEEEEeccCC----Cce-EEEEEEeCceEEEEEEe----------------------ccC
Confidence 334456778999999988877666655531 222 34566678888888432 245
Q ss_pred eEEEEECCCCee-eecCCCCCCCCCeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCC-------------CceEeC
Q 042957 109 WVLRYNVKSNEW-TRCAPLSVPRYDFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPEL-------------DQWTPL 173 (371)
Q Consensus 109 ~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t-------------~~W~~~ 173 (371)
-+++.|...-+= +-+..+-.|-..--+-.+ ++++.-+|..++ --.+-.||... +.|+.
T Consensus 450 PlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g------~vKiSLFdiSdl~~PkEv~~y~l~~~wsp- 522 (603)
T COG4880 450 PLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRLLGVGAYQG------GVKISLFDISDLAAPKEVSNYTLSNAWSP- 522 (603)
T ss_pred ceEEEEcCCCCCCceeEEEecCCchhhccccCCCcEEEeecccC------CceEEEEeccCCCCchhhhheehhhhcch-
Confidence 567777643221 112222223222222233 345555665542 12455565543 22322
Q ss_pred CCCCCCceeeEEEEECC--EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEE
Q 042957 174 PNMSTLRYKCVGVTWQG--KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFS 251 (371)
Q Consensus 174 ~~~p~~~~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv 251 (371)
.-+.+| +...+. +|+.+--+. .-++|-.+.+. +.+..... ......+..+++.+|+
T Consensus 523 ----vf~dhH-AFl~d~~~~ifFlPay~---------------~gyif~iedg~-kl~k~~e~-k~na~RA~fi~dylY~ 580 (603)
T COG4880 523 ----VFYDHH-AFLYDPEAEIFFLPAYL---------------GGYIFFIEDGS-KLRKRAER-KLNADRAFFIKDYLYL 580 (603)
T ss_pred ----hhhccc-eeecCCcccEEEecccC---------------ccEEEEEecCc-eeeehhhh-cccceeeEEecceEEE
Confidence 223333 455543 466555211 22344444441 11111110 0011135678999999
Q ss_pred EcCCCCCccCeEEEEeCCCCceEee
Q 042957 252 SGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 252 ~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
+||. .+++||- |.|+.+
T Consensus 581 vg~~------ev~~lde--nswe~V 597 (603)
T COG4880 581 VGGN------EVWKLDE--NSWEVV 597 (603)
T ss_pred eccc------eeEEecc--chHhhh
Confidence 9984 4888775 569887
No 202
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=40.94 E-value=2.6e+02 Score=24.87 Aligned_cols=124 Identities=11% Similarity=0.043 Sum_probs=63.9
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
...|-..|..+++-.+--.++.+....-+ ..+++|+.+. .-+.+-.+|+++-.--+--.||.....++.
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEv-s~dG~ilTia---------~gssV~Fwdaksf~~lKs~k~P~nV~SASL- 232 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEV-SQDGRILTIA---------YGSSVKFWDAKSFGLLKSYKMPCNVESASL- 232 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceee-ccCCCEEEEe---------cCceeEEeccccccceeeccCccccccccc-
Confidence 45677788888775443333333333222 2345544441 113466677765433222345554443222
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCC-CCeEE-EECCEEEEEcCCCC
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIP-PNQIV-EVDNRLFSSGDCLK 257 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~-~~~~~-~~~~~iyv~GG~~~ 257 (371)
.-+..+||+||.. -.++.||-.|+. .+......... .+++- .-++.+|..|..+.
T Consensus 233 ~P~k~~fVaGged--------------~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 233 HPKKEFFVAGGED--------------FKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cCCCceEEecCcc--------------eEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 2244799999855 357888888774 22221111111 11221 23899999987654
No 203
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=38.71 E-value=3.6e+02 Score=25.82 Aligned_cols=112 Identities=9% Similarity=0.093 Sum_probs=56.5
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE-EECCEEEEEecccCCCCCCCCccccc
Q 042957 134 ACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV-TWQGKIHVVSGFAQRADSDGSVHFTE 212 (371)
Q Consensus 134 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~ 212 (371)
.+...+|.|.+.||.+.. .-++|..+....-.=.-. -+.-+++. .-+|.....||.+
T Consensus 309 iaf~~DGSL~~tGGlD~~--------~RvWDlRtgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~D------------- 366 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSL--------GRVWDLRTGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSD------------- 366 (459)
T ss_pred eEecCCCceeeccCccch--------hheeecccCcEEEEeccc-ccceeeEeECCCceEEeecCCC-------------
Confidence 344468999999999742 345777766543221100 01111222 3366666666533
Q ss_pred cCeeEEEECCCCceeeccccccCCCCCCeEEE--ECCEEEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 213 RSSAEVYDTQAGKWDLVARMWQLDIPPNQIVE--VDNRLFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 213 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
+++-++|++..+= +..+|.-..-...+.. ..++.++..++++. +.+|... .|..+
T Consensus 367 -nt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t----~kiWs~~--~~~~~ 423 (459)
T KOG0272|consen 367 -NTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT----VKIWSTR--TWSPL 423 (459)
T ss_pred -CcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCcc----eeeecCC--Ccccc
Confidence 4566777765432 3333321111112222 25677787776553 5565544 36666
No 204
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=37.29 E-value=3.5e+02 Score=25.22 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=77.9
Q ss_pred cceEEEEECCCCeeeecCCCCCCCC--CeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCC-c-eEeC------CCC
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRY--DFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELD-Q-WTPL------PNM 176 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~--~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~-~-W~~~------~~~ 176 (371)
.-..+.+|+..++-+.+...+.+-. .|.++.-+++..+..-+. ...+-+|-...+ . |..+ ..-
T Consensus 65 gvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-------~g~v~v~p~~~dG~l~~~v~~~~h~g~~ 137 (346)
T COG2706 65 GVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-------SGSVSVYPLQADGSLQPVVQVVKHTGSG 137 (346)
T ss_pred cEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-------CceEEEEEcccCCccccceeeeecCCCC
Confidence 3456777877778777654433322 333333345444443332 356666665442 1 2111 122
Q ss_pred CCCc-----eeeEEEEECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccc-cCCCCCCeEEEE--CC
Q 042957 177 STLR-----YKCVGVTWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMW-QLDIPPNQIVEV--DN 247 (371)
Q Consensus 177 p~~~-----~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~~~~~~~~~~~--~~ 247 (371)
|..| .+++...-+++ |++.- . ..+.+..|+.+.+.-+...... .+..+...++.. +.
T Consensus 138 p~~rQ~~~h~H~a~~tP~~~~l~v~D-L-------------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 138 PHERQESPHVHSANFTPDGRYLVVPD-L-------------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred CCccccCCccceeeeCCCCCEEEEee-c-------------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 3333 33333344554 44333 1 1357888999877665443221 222222235554 33
Q ss_pred EEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCC
Q 042957 248 RLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSS 286 (371)
Q Consensus 248 ~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~ 286 (371)
-.|++.--++. -.++.||....+.+++ +....||.
T Consensus 204 ~aY~v~EL~st--V~v~~y~~~~g~~~~l--Q~i~tlP~ 238 (346)
T COG2706 204 YAYLVNELNST--VDVLEYNPAVGKFEEL--QTIDTLPE 238 (346)
T ss_pred EEEEEeccCCE--EEEEEEcCCCceEEEe--eeeccCcc
Confidence 57787543332 3577778877888888 23345553
No 205
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=36.46 E-value=3.4e+02 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCC
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPN 175 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 175 (371)
++.....||.+ +.+-+||+.+++-+++..
T Consensus 83 dgskVf~g~~D--------k~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 83 DGSKVFSGGCD--------KQAKLWDLASGQVSQVAA 111 (347)
T ss_pred CCceEEeeccC--------CceEEEEccCCCeeeeee
Confidence 44444455654 468899999998887763
No 206
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=35.21 E-value=2.9e+02 Score=25.41 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=51.9
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEE--E--CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe-CCCCCCCce
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTV--C--DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP-LPNMSTLRY 181 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~--~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~~ 181 (371)
...+..||.++-+--. +.-|.....-+++. + .++||+-|.+++ .+-.||-.++++-+ +.....+..
T Consensus 237 Hp~~rlYdv~T~Qcfv-sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG--------~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFV-SANPDDQHTGAITQVRYSSTGSLYVTASKDG--------AIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred CCceeEEeccceeEee-ecCcccccccceeEEEecCCccEEEEeccCC--------cEEeeccccHHHHHHHHhhcCCce
Confidence 4567888887766322 22232222222222 2 579999998874 47788887775532 222222222
Q ss_pred eeEEE-EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce
Q 042957 182 KCVGV-TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW 226 (371)
Q Consensus 182 ~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W 226 (371)
-.++. ..+++..+-.|.+ ..+..+.+.+++-
T Consensus 308 vcSa~Ftkn~kyiLsSG~D--------------S~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKD--------------STVKLWEISTGRM 339 (430)
T ss_pred eeeEEEccCCeEEeecCCc--------------ceeeeeeecCCce
Confidence 22222 3466666666644 3456666666653
No 207
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=35.14 E-value=4.8e+02 Score=26.18 Aligned_cols=142 Identities=16% Similarity=0.192 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEE
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEV 218 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~ 218 (371)
++.+++.|-.+ ..+-++|..++....+-. +......++.....++.+|.. -+.|.+
T Consensus 260 ~~~~lvsgS~D--------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~-------------D~tVkV 315 (537)
T KOG0274|consen 260 GGDKLVSGSTD--------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSR-------------DNTVKV 315 (537)
T ss_pred CCCEEEEEecC--------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeeccC-------------CceEEE
Confidence 46666666554 357778888877655422 233333334444444444322 257888
Q ss_pred EECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCC
Q 042957 219 YDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDW 298 (371)
Q Consensus 219 yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~ 298 (371)
||..+.+-..+-.- ....-..+.+++.+++.|.... .|.+||+.+. +-+ ..+....
T Consensus 316 W~v~n~~~l~l~~~---h~~~V~~v~~~~~~lvsgs~d~----~v~VW~~~~~--~cl-----~sl~gH~---------- 371 (537)
T KOG0274|consen 316 WDVTNGACLNLLRG---HTGPVNCVQLDEPLLVSGSYDG----TVKVWDPRTG--KCL-----KSLSGHT---------- 371 (537)
T ss_pred EeccCcceEEEecc---ccccEEEEEecCCEEEEEecCc----eEEEEEhhhc--eee-----eeecCCc----------
Confidence 99887765544321 1111134556777777776655 4889888843 333 4443220
Q ss_pred CCceeeeeeEeeeCC-eEEEEcceeecccccceeeEEEEeecccc
Q 042957 299 PPIQRLYLTMAPIGT-HLYFLAGYRMAGELARTMSMVHIFDTAAK 342 (371)
Q Consensus 299 ~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~v~~~d~~~~ 342 (371)
..- ..+.+++ ..++-|+.+ ..|..||+++.
T Consensus 372 ----~~V-~sl~~~~~~~~~Sgs~D---------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 372 ----GRV-YSLIVDSENRLLSGSLD---------TTIKVWDLRTK 402 (537)
T ss_pred ----ceE-EEEEecCcceEEeeeec---------cceEeecCCch
Confidence 111 1224455 666666654 47888999874
No 208
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=34.89 E-value=3.5e+02 Score=24.50 Aligned_cols=101 Identities=21% Similarity=0.207 Sum_probs=61.2
Q ss_pred CEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCc---eeeEEEEECCEEEEEecccCCCCCCCCccccccCee
Q 042957 140 NKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLR---YKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSA 216 (371)
Q Consensus 140 ~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v 216 (371)
+-+++-+|.+ +.+-++|..+-+-+ .+-.+. .....+..+|.+..-||..+ .+
T Consensus 162 ~p~Ivs~s~D--------ktvKvWnl~~~~l~---~~~~gh~~~v~t~~vSpDGslcasGgkdg--------------~~ 216 (315)
T KOG0279|consen 162 NPIIVSASWD--------KTVKVWNLRNCQLR---TTFIGHSGYVNTVTVSPDGSLCASGGKDG--------------EA 216 (315)
T ss_pred CcEEEEccCC--------ceEEEEccCCcchh---hccccccccEEEEEECCCCCEEecCCCCc--------------eE
Confidence 5566677776 45777887764322 222222 22333456999999998764 56
Q ss_pred EEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 217 EVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 217 ~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
..+|+...+= +..+..... .++++...++.++.-+.... |.++|.++..
T Consensus 217 ~LwdL~~~k~--lysl~a~~~-v~sl~fspnrywL~~at~~s----IkIwdl~~~~ 265 (315)
T KOG0279|consen 217 MLWDLNEGKN--LYSLEAFDI-VNSLCFSPNRYWLCAATATS----IKIWDLESKA 265 (315)
T ss_pred EEEEccCCce--eEeccCCCe-EeeEEecCCceeEeeccCCc----eEEEeccchh
Confidence 7788876642 333322221 24677778888887766553 8888887753
No 209
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=34.50 E-value=5.1e+02 Score=26.34 Aligned_cols=102 Identities=9% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCCceEEEEeeecCCCCCCCccccceeEEeCCCCcee-ccCCCCcccccccccceEEEEECCEEEEEcCcccccCCCCCC
Q 042957 15 NPSGHLILASFCLREPGPRSNISNWLASYNPSNNTWS-HVSHIPDLLENHVLKGFSIVSLGDSVYIIGGLLCHKERAHNS 93 (371)
Q Consensus 15 ~~~~~~i~~g~~~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 93 (371)
...+++++++--.|+ +-.||......+ +-..+-.++. |--+-+-+..+.++..++--..
T Consensus 61 ~n~eHiLavadE~G~----------i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wapge~~lVsasG--------- 120 (720)
T KOG0321|consen 61 PNKEHILAVADEDGG----------IILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAPGESLLVSASG--------- 120 (720)
T ss_pred CCccceEEEecCCCc----------eeeecchhhhcchhhhhhccccc-ccceeEeeccCCCceeEEEccC---------
Confidence 344556666666555 556776665554 1122222222 3334444444544444442211
Q ss_pred CCCCccccccccccceEEEEECCCCeeeecCCCCCC----CCCeeEEEECCEEEEEcCCCC
Q 042957 94 DESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVP----RYDFACTVCDNKIYVAGGKSN 150 (371)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~~~~~~lyv~GG~~~ 150 (371)
....-.+|..+..-.... +-.. +..-+....+..+|+.||+++
T Consensus 121 -------------DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 121 -------------DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred -------------Cceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCC
Confidence 234556677666644332 1111 112223334778999999975
No 210
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.50 E-value=4.6e+02 Score=27.04 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=29.4
Q ss_pred CeeEEEECCCCceeeccccc-cCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCC
Q 042957 214 SSAEVYDTQAGKWDLVARMW-QLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~~~-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
..|.+||+.+.+-. ..+. .......-....++.+++.||.++. +..+|...
T Consensus 599 ~~I~iWDl~~~~~v--~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns----V~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSLV--KQLKGHTGTIYSLSFSRDGNVLASGGADNS----VRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcch--hhhhcccCceeEEEEecCCCEEEecCCCCe----EEEEEchh
Confidence 46788999886422 1111 1111111233458899999997664 77777654
No 211
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=32.83 E-value=1.5e+02 Score=28.78 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred CeeEEEECCCCceeeccccccCCCCCCeEEEE---CCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 214 SSAEVYDTQAGKWDLVARMWQLDIPPNQIVEV---DNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
..+-.+|++|++-...-...... .++.. +.++++.||.+.. |..||+.++.
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~----~cvkf~pd~~n~fl~G~sd~k----i~~wDiRs~k 333 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVP----TCVKFHPDNQNIFLVGGSDKK----IRQWDIRSGK 333 (503)
T ss_pred eeeeeeccccceEEEEEecCCCc----eeeecCCCCCcEEEEecCCCc----EEEEeccchH
Confidence 46778999998754332221111 12221 3589999998775 9999998876
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=32.64 E-value=3.7e+02 Score=24.17 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=26.3
Q ss_pred EEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeE
Q 042957 136 TVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCV 184 (371)
Q Consensus 136 ~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~ 184 (371)
...++||+.-.|++. ++-+| .|+++.+|..-.++.+
T Consensus 259 IRpD~KIlATAGWD~--------RiRVy-----swrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 259 IRPDGKILATAGWDH--------RIRVY-----SWRTLNPLAVLKYHSA 294 (323)
T ss_pred EccCCcEEeecccCC--------cEEEE-----EeccCCchhhhhhhhc
Confidence 345899999999984 56777 5888888776555543
No 213
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=32.61 E-value=4.7e+02 Score=25.34 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=73.3
Q ss_pred EECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCcee-eEEEEEC--CEEEEEecccCCCCCCCCcccccc
Q 042957 137 VCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYK-CVGVTWQ--GKIHVVSGFAQRADSDGSVHFTER 213 (371)
Q Consensus 137 ~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~-~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~ 213 (371)
..+++.++.||.+ ..+.+||..+..= +..++.-|.. ...+... +.+|..+ ..
T Consensus 211 S~Dgkylatgg~d--------~~v~Iw~~~t~eh--v~~~~ghr~~V~~L~fr~gt~~lys~s---------------~D 265 (479)
T KOG0299|consen 211 SSDGKYLATGGRD--------RHVQIWDCDTLEH--VKVFKGHRGAVSSLAFRKGTSELYSAS---------------AD 265 (479)
T ss_pred cCCCcEEEecCCC--------ceEEEecCcccch--hhcccccccceeeeeeecCccceeeee---------------cC
Confidence 3589999999987 3578888876532 2222322221 1222222 3477666 22
Q ss_pred CeeEEEECCCCceeeccccccCCCCCCeEEE-ECCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCC
Q 042957 214 SSAEVYDTQAGKWDLVARMWQLDIPPNQIVE-VDNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSS 292 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~ 292 (371)
.++-+|+.+...... .+-.-.....++-+ -..++..+||.+.. +..|++...+ +.+ .
T Consensus 266 rsvkvw~~~~~s~ve--tlyGHqd~v~~IdaL~reR~vtVGgrDrT----~rlwKi~ees-qli---------f------ 323 (479)
T KOG0299|consen 266 RSVKVWSIDQLSYVE--TLYGHQDGVLGIDALSRERCVTVGGRDRT----VRLWKIPEES-QLI---------F------ 323 (479)
T ss_pred CceEEEehhHhHHHH--HHhCCccceeeechhcccceEEeccccce----eEEEeccccc-eee---------e------
Confidence 455666655543321 11110000111222 24678888887664 6666653321 111 0
Q ss_pred CCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEeecccc
Q 042957 293 TNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAK 342 (371)
Q Consensus 293 ~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~ 342 (371)
-+..-.--+++.+++.=||.|+-++ +|.+|+.-++
T Consensus 324 ------rg~~~sidcv~~In~~HfvsGSdnG---------~IaLWs~~KK 358 (479)
T KOG0299|consen 324 ------RGGEGSIDCVAFINDEHFVSGSDNG---------SIALWSLLKK 358 (479)
T ss_pred ------eCCCCCeeeEEEecccceeeccCCc---------eEEEeeeccc
Confidence 0111233466777887788887544 5666665544
No 214
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.14 E-value=4.1e+02 Score=27.03 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe--------CCCCC-CCcee-eEEEEE-CCEEEEEecccCCCCCCCC
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP--------LPNMS-TLRYK-CVGVTW-QGKIHVVSGFAQRADSDGS 207 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~--------~~~~p-~~~~~-~~~~~~-~~~lyv~GG~~~~~~~~~~ 207 (371)
++.+++.||.+ ..+++||..+..=+. ..+++ .++.. .+.++- .+.+++-||..
T Consensus 129 ~~~lvaSgGLD--------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-------- 192 (735)
T KOG0308|consen 129 NNELVASGGLD--------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-------- 192 (735)
T ss_pred CceeEEecCCC--------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc--------
Confidence 67888999987 468888887653211 22344 33322 222332 23477777644
Q ss_pred ccccccCeeEEEECCCCc
Q 042957 208 VHFTERSSAEVYDTQAGK 225 (371)
Q Consensus 208 ~~~~~~~~v~~yd~~t~~ 225 (371)
+.+..||+++..
T Consensus 193 ------k~lr~wDprt~~ 204 (735)
T KOG0308|consen 193 ------KDLRLWDPRTCK 204 (735)
T ss_pred ------cceEEecccccc
Confidence 678899999875
No 215
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=32.05 E-value=5.4e+02 Score=25.83 Aligned_cols=136 Identities=12% Similarity=0.143 Sum_probs=67.7
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCe-eEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceee-E
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDF-ACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKC-V 184 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~-~ 184 (371)
.+.|.+++..+.+-..+-. +.... -++.+++.+.+.|..+ ..+-+||+.+.+. +..+.. ..+. .
T Consensus 310 D~tVkVW~v~n~~~l~l~~---~h~~~V~~v~~~~~~lvsgs~d--------~~v~VW~~~~~~c--l~sl~g-H~~~V~ 375 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLR---GHTGPVNCVQLDEPLLVSGSYD--------GTVKVWDPRTGKC--LKSLSG-HTGRVY 375 (537)
T ss_pred CceEEEEeccCcceEEEec---cccccEEEEEecCCEEEEEecC--------ceEEEEEhhhcee--eeeecC-CcceEE
Confidence 3556666665444322211 11111 2233567777777765 3688888885543 222222 1111 1
Q ss_pred EEEECC-EEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeE
Q 042957 185 GVTWQG-KIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 185 ~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 263 (371)
...+++ ...+-|+.+ ..+.++|+.+.+ +-+..+......- ......+++++-+..++ .+
T Consensus 376 sl~~~~~~~~~Sgs~D--------------~~IkvWdl~~~~-~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~----~I 435 (537)
T KOG0274|consen 376 SLIVDSENRLLSGSLD--------------TTIKVWDLRTKR-KCIHTLQGHTSLV-SSLLLRDNFLVSSSADG----TI 435 (537)
T ss_pred EEEecCcceEEeeeec--------------cceEeecCCchh-hhhhhhcCCcccc-cccccccceeEeccccc----cE
Confidence 124455 444445433 468889988875 2222222111110 12234566777666554 48
Q ss_pred EEEeCCCCceEee
Q 042957 264 ESYDGELNMWDEV 276 (371)
Q Consensus 264 ~~yd~~~~~W~~~ 276 (371)
.++|.+++.=.++
T Consensus 436 k~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 436 KLWDAEEGECLRT 448 (537)
T ss_pred EEeecccCceeee
Confidence 8888887654444
No 216
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=31.13 E-value=4e+02 Score=24.09 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCEEEEEe-cccCCCCC---CCCccccccCeeEEEECCCCceeeccccccCCCCCCe----EEEEC-------CEEEEEc
Q 042957 189 QGKIHVVS-GFAQRADS---DGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQ----IVEVD-------NRLFSSG 253 (371)
Q Consensus 189 ~~~lyv~G-G~~~~~~~---~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~----~~~~~-------~~iyv~G 253 (371)
.++|+|+- |....... . +--.+..||+++++-.+.-.+|.......+ +++.. +.+|+.-
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~------~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQV------CPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHT------S--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred CCCEEEEeCCCcCCCCCCCCC------CCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Q ss_pred CCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEccee
Q 042957 254 DCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYR 322 (371)
Q Consensus 254 G~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 322 (371)
-.... +.+||+.+++..++ ...+....-+...++++|..
T Consensus 85 ~~~~g----lIV~dl~~~~s~Rv--------------------------~~~~~~~~p~~~~~~i~g~~ 123 (287)
T PF03022_consen 85 SGGPG----LIVYDLATGKSWRV--------------------------LHNSFSPDPDAGPFTIGGES 123 (287)
T ss_dssp TTTCE----EEEEETTTTEEEEE--------------------------ETCGCTTS-SSEEEEETTEE
T ss_pred CCcCc----EEEEEccCCcEEEE--------------------------ecCCcceeccccceeccCce
No 217
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=30.77 E-value=4e+02 Score=24.21 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=65.1
Q ss_pred CeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE-EECCEEEEEecccCCCCCCCCccc
Q 042957 132 DFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV-TWQGKIHVVSGFAQRADSDGSVHF 210 (371)
Q Consensus 132 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~ 210 (371)
.-+.+..+.+.+++|++. .+..-|-.-++|++... +.+|..+..+ ..+.+=++.|-
T Consensus 47 ~ia~~~~g~~gwlVg~rg---------tiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~vGe------------- 103 (339)
T COG4447 47 DIAFTESGSHGWLVGGRG---------TILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWIVGE------------- 103 (339)
T ss_pred ceeEeecCcceEEEcCcc---------eEEEecCCcccchhhhc-hhhhhheeeeeeecccccccCC-------------
Confidence 344455678999999985 35555667788987653 3335444433 44444555551
Q ss_pred cccCeeEEEECCCCceeeccccccCCCCCCeEEEECCE-EEEEcCCCCCccCeEEEEeCCCCceEee
Q 042957 211 TERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNR-LFSSGDCLKAWKGHIESYDGELNMWDEV 276 (371)
Q Consensus 211 ~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~yd~~~~~W~~~ 276 (371)
-..+..-+-.-.+|.+++.-..+.-+...+..++.+ -+++|-.. .|+.-+=.-+.|+.+
T Consensus 104 --~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G-----ail~T~DgGk~Wk~l 163 (339)
T COG4447 104 --PSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQG-----AILKTTDGGKNWKAL 163 (339)
T ss_pred --cceEEEecCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccc-----eEEEecCCcccHhHh
Confidence 133444455567898886433332223355555554 44554321 355555556779887
No 218
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=30.76 E-value=5.3e+02 Score=25.34 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=69.2
Q ss_pred ECCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCC
Q 042957 73 LGDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLF 152 (371)
Q Consensus 73 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~ 152 (371)
..+.+-++|-....-.+|+.+++ .....+|.=.-..++.+++-+|+...+. -..++++||.+.-.++
T Consensus 180 ~~dg~ivigRntydLP~WK~YkG---------GtrGklWis~d~g~tFeK~vdl~~~vS~--PmIV~~RvYFlsD~eG-- 246 (668)
T COG4946 180 IKDGIIVIGRNTYDLPHWKGYKG---------GTRGKLWISSDGGKTFEKFVDLDGNVSS--PMIVGERVYFLSDHEG-- 246 (668)
T ss_pred EeCCEEEEccCcccCcccccccC---------CccceEEEEecCCcceeeeeecCCCcCC--ceEEcceEEEEecccC--
Confidence 33336666655555555554444 3356677655555577777776643333 2356899999865543
Q ss_pred CCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecc
Q 042957 153 SAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVA 230 (371)
Q Consensus 153 ~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~ 230 (371)
...++.-|..-+.-++..+... +.+--+..+++-.||. .-.+++.|||+++.-+++.
T Consensus 247 ----~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq---------------~~GdIylydP~td~lekld 303 (668)
T COG4946 247 ----VGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQ---------------NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred ----ccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEe---------------cCCcEEEeCCCcCcceeee
Confidence 3456666666554444433221 1111134455544443 1147888888888877663
No 219
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=29.61 E-value=3.9e+02 Score=23.45 Aligned_cols=196 Identities=11% Similarity=0.097 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCCCCCCCCCceE-EEEeCC-CCceEeCCCCCCC--------ceeeEEEEECCEEEEEecccCCCCCCCCc
Q 042957 139 DNKIYVAGGKSNLFSAKGTASA-EVYHPE-LDQWTPLPNMSTL--------RYKCVGVTWQGKIHVVSGFAQRADSDGSV 208 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~-~~yd~~-t~~W~~~~~~p~~--------~~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 208 (371)
+++|+++-.............+ +..... -.+|+....++.. .....+...++++++.. +.....
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~----- 131 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESGG----- 131 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESSC-----
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eecccc-----
Confidence 8899988522111011111121 233333 4589876543321 12222344588888873 211110
Q ss_pred cccccCeeEEEECC-CCceeeccccccC-CCCCCeEEE-ECCEEEEEcCCCCCccCeEEEEeCC-CCceEeecCcccccC
Q 042957 209 HFTERSSAEVYDTQ-AGKWDLVARMWQL-DIPPNQIVE-VDNRLFSSGDCLKAWKGHIESYDGE-LNMWDEVNGSCLQTL 284 (371)
Q Consensus 209 ~~~~~~~v~~yd~~-t~~W~~~~~~~~~-~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~l 284 (371)
.......|... -.+|+.....+.. ......++. -+++|+++-... ........+... -.+|+.... ..+
T Consensus 132 ---~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~~~~~~~S~D~G~TWs~~~~---~~~ 204 (275)
T PF13088_consen 132 ---SFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GNDDIYISRSTDGGRTWSPPQP---TNL 204 (275)
T ss_dssp ---EEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SSTEEEEEEESSTTSS-EEEEE---EEC
T ss_pred ---CcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCCcEEEEEECCCCCcCCCcee---ccc
Confidence 12344445555 4569888665422 111112332 367888875442 111234444444 357998621 233
Q ss_pred CCCcccCCCCCCCCCCceeeeeeEeee-CCeEEEEcceeecccccceeeEEEEeecccccccccccCccccccccccccc
Q 042957 285 SSPVSTSSTNTEDWPPIQRLYLTMAPI-GTHLYFLAGYRMAGELARTMSMVHIFDTAAKSDAWRSFEPIVEEGEKELCSH 363 (371)
Q Consensus 285 ~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~~~~W~~~~~~p~~~~~~~~~~ 363 (371)
+.. .....++.+ +++++++...... ...-.++.-.-+. .+|.....+.... ...+.-
T Consensus 205 ~~~---------------~~~~~~~~~~~g~~~~~~~~~~~----r~~l~l~~S~D~g--~tW~~~~~i~~~~-~~~~~Y 262 (275)
T PF13088_consen 205 PNP---------------NSSISLVRLSDGRLLLVYNNPDG----RSNLSLYVSEDGG--KTWSRPKTIDDGP-NGDSGY 262 (275)
T ss_dssp SSC---------------CEEEEEEECTTSEEEEEEECSST----SEEEEEEEECTTC--EEEEEEEEEEEEE--CCEEE
T ss_pred Ccc---------------cCCceEEEcCCCCEEEEEECCCC----CCceEEEEEeCCC--CcCCccEEEeCCC-CCcEEC
Confidence 332 444455554 5577777662111 1122333222223 3899887776422 122444
Q ss_pred eeeEEe
Q 042957 364 CCVVQL 369 (371)
Q Consensus 364 ~~~~~~ 369 (371)
.|.+.+
T Consensus 263 ~~~~~~ 268 (275)
T PF13088_consen 263 PSLTQL 268 (275)
T ss_dssp EEEEEE
T ss_pred CeeEEe
Confidence 455444
No 220
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=28.64 E-value=2.3e+02 Score=27.53 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE--EE-CCEEEEEecccCCCCCCCCccccccCe
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV--TW-QGKIHVVSGFAQRADSDGSVHFTERSS 215 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~--~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~ 215 (371)
.+.=|+.+|.+ ..+-.+|.+|++....- ...+. ..++ .- +.++|++||.+. .
T Consensus 269 ~g~~fLS~sfD--------~~lKlwDtETG~~~~~f--~~~~~-~~cvkf~pd~~n~fl~G~sd~--------------k 323 (503)
T KOG0282|consen 269 CGTSFLSASFD--------RFLKLWDTETGQVLSRF--HLDKV-PTCVKFHPDNQNIFLVGGSDK--------------K 323 (503)
T ss_pred cCCeeeeeecc--------eeeeeeccccceEEEEE--ecCCC-ceeeecCCCCCcEEEEecCCC--------------c
Confidence 34455555654 34667888887654321 11111 1112 11 348999998663 4
Q ss_pred eEEEECCCCc
Q 042957 216 AEVYDTQAGK 225 (371)
Q Consensus 216 v~~yd~~t~~ 225 (371)
|..||.+++.
T Consensus 324 i~~wDiRs~k 333 (503)
T KOG0282|consen 324 IRQWDIRSGK 333 (503)
T ss_pred EEEEeccchH
Confidence 5666666544
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=28.58 E-value=5.3e+02 Score=24.70 Aligned_cols=138 Identities=7% Similarity=0.024 Sum_probs=64.1
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV 186 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~ 186 (371)
.++|.+|..+++.+++...... .......-++ +|+......+ ...++.++.....-+.+.. .. .. ...
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~l~~--~~-~~-~~~ 340 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGN-NTEPSWSPDGQSILFTSDRSG------SPQVYRMSASGGGASLVGG--RG-YS-AQI 340 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCC-cCCEEECCCCCEEEEEECCCC------CceEEEEECCCCCeEEecC--CC-CC-ccC
Confidence 3589999988877666432211 1122223344 4554433321 2467777766554333321 11 11 112
Q ss_pred EECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEE
Q 042957 187 TWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 265 (371)
.-+++ |++.++ ..+..+|+.+..++.+..... . ......-+++.++++..... ...++.
T Consensus 341 SpDG~~ia~~~~----------------~~i~~~Dl~~g~~~~lt~~~~--~-~~~~~sPdG~~i~~~s~~g~-~~~l~~ 400 (429)
T PRK01742 341 SADGKTLVMING----------------DNVVKQDLTSGSTEVLSSTFL--D-ESPSISPNGIMIIYSSTQGL-GKVLQL 400 (429)
T ss_pred CCCCCEEEEEcC----------------CCEEEEECCCCCeEEecCCCC--C-CCceECCCCCEEEEEEcCCC-ceEEEE
Confidence 33444 444432 245668999988876542211 1 11122335666665543221 122444
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
.+.....=+.+
T Consensus 401 ~~~~G~~~~~l 411 (429)
T PRK01742 401 VSADGRFKARL 411 (429)
T ss_pred EECCCCceEEc
Confidence 45444443334
No 222
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=27.32 E-value=7.8e+02 Score=26.22 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEc
Q 042957 246 DNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLA 319 (371)
Q Consensus 246 ~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 319 (371)
++++.+.+-. +.|.+|+..+ |... -.|...-..|.+++..|.|-+ .+.++..++++|.|.-
T Consensus 200 ~g~la~~~~d-----~~Vkvy~r~~--we~~-----f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 200 GGTLAVPPVD-----NTVKVYSRKG--WELQ-----FKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWN 260 (933)
T ss_pred CCeEEeeccC-----CeEEEEccCC--ceeh-----eeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEe
Confidence 4556555322 3578887765 8776 555544334445555666653 3345555666766654
No 223
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=26.84 E-value=5.9e+02 Score=24.64 Aligned_cols=109 Identities=12% Similarity=-0.005 Sum_probs=61.7
Q ss_pred ccceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEE
Q 042957 106 VLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVG 185 (371)
Q Consensus 106 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~ 185 (371)
...++|.+|..+++=.++......-...+...-+.+|+....+. ....++++|++..+-+++..-- +......
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~------G~p~I~~~~~~g~~~~riT~~~-~~~~~p~ 332 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRG------GRPQIYLYDLEGSQVTRLTFSG-GGNSNPV 332 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCC------CCcceEEECCCCCceeEeeccC-CCCcCcc
Confidence 35679999998887333333322222223333345555553332 2348999999988766664322 2222334
Q ss_pred EEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc-eeecccc
Q 042957 186 VTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK-WDLVARM 232 (371)
Q Consensus 186 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~~~~~ 232 (371)
..-+++.++|-+... + . ..+..+|+.++. |+.+...
T Consensus 333 ~SpdG~~i~~~~~~~-g---------~-~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 333 WSPDGDKIVFESSSG-G---------Q-WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred CCCCCCEEEEEeccC-C---------c-eeeEEeccCCCCcEEEcccc
Confidence 455666666655331 1 1 468889998877 8877543
No 224
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=26.54 E-value=6.4e+02 Score=24.93 Aligned_cols=89 Identities=8% Similarity=0.058 Sum_probs=45.1
Q ss_pred eEEEEeCCCC----ceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeecccccc
Q 042957 159 SAEVYHPELD----QWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQ 234 (371)
Q Consensus 159 ~~~~yd~~t~----~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 234 (371)
.+..||.... .|.+....|. .+......+..|++-=|++ +.+..||....+-...-.-..
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsAP~--~gicfspsne~l~vsVG~D--------------kki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSAPC--RGICFSPSNEALLVSVGYD--------------KKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred eEEEEeccCCCcccchhhhccCCc--CcceecCCccceEEEeccc--------------ceEEEeecccccccceeeecC
Confidence 4666665543 3544433332 2223345677777766644 678999998665433321111
Q ss_pred CCCCCCeEEEEC-CEEEEEcCCCCCccCeEEEEeCCC
Q 042957 235 LDIPPNQIVEVD-NRLFSSGDCLKAWKGHIESYDGEL 270 (371)
Q Consensus 235 ~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~yd~~~ 270 (371)
| ..+++... +.+++.|...+ .++.||+..
T Consensus 252 P---lstvaf~~~G~~L~aG~s~G----~~i~YD~R~ 281 (673)
T KOG4378|consen 252 P---LSTVAFSECGTYLCAGNSKG----ELIAYDMRS 281 (673)
T ss_pred C---cceeeecCCceEEEeecCCc----eEEEEeccc
Confidence 1 12344443 44444443332 377777654
No 225
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.37 E-value=6.4e+02 Score=24.93 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCC-CCCeeEEE-ECCEEEEEcCCCCC
Q 042957 74 GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVP-RYDFACTV-CDNKIYVAGGKSNL 151 (371)
Q Consensus 74 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~-~~~~lyv~GG~~~~ 151 (371)
+++-+|+||+ .+.+-+.|..+-+=+.-..++.. ...++++. -+.+|...--.+
T Consensus 476 dgrtLivGGe-----------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd-- 530 (705)
T KOG0639|consen 476 DGRTLIVGGE-----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-- 530 (705)
T ss_pred CCceEEeccc-----------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC--
Confidence 7899999998 35566667655543333334321 22333333 455554432222
Q ss_pred CCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEE---CCEEEEEecccCCCCCCCCccccccCeeEEEECCCC
Q 042957 152 FSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTW---QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAG 224 (371)
Q Consensus 152 ~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~ 224 (371)
..+.+||+.+.+- +..++.--.+..+..+ +.+|+ .||.+ +++-++|+++.
T Consensus 531 ------GnI~vwDLhnq~~--VrqfqGhtDGascIdis~dGtklW-TGGlD--------------ntvRcWDlreg 583 (705)
T KOG0639|consen 531 ------GNIAVWDLHNQTL--VRQFQGHTDGASCIDISKDGTKLW-TGGLD--------------NTVRCWDLREG 583 (705)
T ss_pred ------CcEEEEEccccee--eecccCCCCCceeEEecCCCceee-cCCCc--------------cceeehhhhhh
Confidence 3588999987643 2233322223333322 34565 56644 56666776654
No 226
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=26.25 E-value=5.3e+02 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=20.7
Q ss_pred eeEeeeCCeEEEEcceeecccccceeeEEEEeecccc
Q 042957 306 LTMAPIGTHLYFLAGYRMAGELARTMSMVHIFDTAAK 342 (371)
Q Consensus 306 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d~~~~ 342 (371)
-.++.-++-.||++|... -..+|+|+-..+
T Consensus 253 k~ccfs~dgeYv~a~s~~-------aHaLYIWE~~~G 282 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSAR-------AHALYIWEKSIG 282 (405)
T ss_pred hheeecCCccEEEecccc-------ceeEEEEecCCc
Confidence 345556678888888632 467888887765
No 227
>PTZ00334 trans-sialidase; Provisional
Probab=25.92 E-value=8e+02 Score=25.90 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=54.1
Q ss_pred CeeEEEECCCCceeeccccccCCCCCCeEEEEC-CEEEEEcCCCCCccCeEEEEeCCC--CceEeecCcccccCCCCccc
Q 042957 214 SSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVD-NRLFSSGDCLKAWKGHIESYDGEL--NMWDEVNGSCLQTLSSPVST 290 (371)
Q Consensus 214 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~l~~~~~~ 290 (371)
-++.+|...+..|..-..++...+....++... ++|+++-.+... .-.+|.... .+|++.- ..|+..|.-
T Consensus 287 vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG---~RrVYES~DmG~tWtEAl----GTLsrVW~n 359 (780)
T PTZ00334 287 VSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDDG---RRRVYESGDKGDSWTEAL----GTLSRVWGN 359 (780)
T ss_pred EEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCCC---CEEEEEECCCCCChhhCC----Cccceeecc
Confidence 467788777778987666776655555788885 899998766432 124554444 7899852 556555433
Q ss_pred CCCCCCCCCCceeeeeeEeeeCC
Q 042957 291 SSTNTEDWPPIQRLYLTMAPIGT 313 (371)
Q Consensus 291 ~~~~~~~~~p~~r~~~~~~~~~~ 313 (371)
|.... .+..+.++..+.|++
T Consensus 360 s~~~~---~~~~~~~~iTatIe~ 379 (780)
T PTZ00334 360 KQKGN---EKGVGSGFSTATIEN 379 (780)
T ss_pred CCCCC---CCCCCCccEEEEECC
Confidence 32111 112345556666655
No 228
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=25.83 E-value=5.8e+02 Score=24.32 Aligned_cols=73 Identities=11% Similarity=-0.027 Sum_probs=37.4
Q ss_pred EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEE-cCCCCCccCeEEE
Q 042957 187 TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSS-GDCLKAWKGHIES 265 (371)
Q Consensus 187 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~-GG~~~~~~~~~~~ 265 (371)
.-+++-++|.+.... ...++..|+++.+-+++..-+........++.-++.+|.+ .+ ..+..
T Consensus 44 t~dG~kllF~s~~dg-----------~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~------~~l~~ 106 (386)
T PF14583_consen 44 TDDGRKLLFASDFDG-----------NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG------RSLRR 106 (386)
T ss_dssp -TTS-EEEEEE-TTS-----------S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT------TEEEE
T ss_pred CCCCCEEEEEeccCC-----------CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC------CeEEE
Confidence 346666666655332 2578999999999999976654333322233335565444 23 25888
Q ss_pred EeCCCCceEee
Q 042957 266 YDGELNMWDEV 276 (371)
Q Consensus 266 yd~~~~~W~~~ 276 (371)
.|+++.+=+.|
T Consensus 107 vdL~T~e~~~v 117 (386)
T PF14583_consen 107 VDLDTLEERVV 117 (386)
T ss_dssp EETTT--EEEE
T ss_pred EECCcCcEEEE
Confidence 89888776666
No 229
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=6.6e+02 Score=24.79 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEe-CCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTP-LPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
+++.+.-||.+ +.+.+||.....+.. +.....+....+-+-....|...||-..+ ..+.
T Consensus 312 d~~~lASGgnD--------N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D------------~~i~ 371 (484)
T KOG0305|consen 312 DGNQLASGGND--------NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD------------RCIK 371 (484)
T ss_pred CCCeeccCCCc--------cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc------------cEEE
Confidence 56666677776 468888873322211 11111111212222346778888876654 4677
Q ss_pred EEECCCCceeeccccccCCCCCCeEEEE--CCEEEEEcCCCCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCC
Q 042957 218 VYDTQAGKWDLVARMWQLDIPPNQIVEV--DNRLFSSGDCLKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNT 295 (371)
Q Consensus 218 ~yd~~t~~W~~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~ 295 (371)
.+|..+++=....... .-.+.++-. .++|...-|+... ++.+|+..+ -..+ ..|...
T Consensus 372 fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n---~i~lw~~ps--~~~~-----~~l~gH-------- 430 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSEN---QITLWKYPS--MKLV-----AELLGH-------- 430 (484)
T ss_pred EEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCC---cEEEEeccc--ccee-----eeecCC--------
Confidence 7888766422221111 101122222 4567777776443 466665554 2223 333322
Q ss_pred CCCCCceeeeeeEeeeCCeEEEEcceee
Q 042957 296 EDWPPIQRLYLTMAPIGTHLYFLAGYRM 323 (371)
Q Consensus 296 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 323 (371)
..|..+-+..-++.-++.|+.+.
T Consensus 431 -----~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 431 -----TSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred -----cceeEEEEECCCCCEEEEecccC
Confidence 34666666666777777776654
No 230
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=25.38 E-value=4.9e+02 Score=23.24 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=49.8
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCC
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDI 237 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 237 (371)
..+-.+|..+++=.+--.++.+....- +..++.|..+. .-.+|--+|+.+-.-.+--.||....
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia---------------~gssV~Fwdaksf~~lKs~k~P~nV~ 228 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIA---------------YGSSVKFWDAKSFGLLKSYKMPCNVE 228 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEe---------------cCceeEEeccccccceeeccCccccc
Confidence 568888988875433223343333222 23455555554 12345555655443333334443221
Q ss_pred CCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 238 PPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 238 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
.+...-+..+||.||.... +++||..++.
T Consensus 229 --SASL~P~k~~fVaGged~~----~~kfDy~Tge 257 (334)
T KOG0278|consen 229 --SASLHPKKEFFVAGGEDFK----VYKFDYNTGE 257 (334)
T ss_pred --cccccCCCceEEecCcceE----EEEEeccCCc
Confidence 1122236689999997653 8889888764
No 231
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=25.32 E-value=1.5e+02 Score=26.71 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred EECCEEEEEcCCCCCcc---CeEEEEeCC-CCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEc
Q 042957 244 EVDNRLFSSGDCLKAWK---GHIESYDGE-LNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLA 319 (371)
Q Consensus 244 ~~~~~iyv~GG~~~~~~---~~~~~yd~~-~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 319 (371)
..+++.++.|....... ..+.-|.-. .++|+.+.+...-.|..| -.+.++++| |+|
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDP-------------------F~t~I~gel-ifG 93 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDP-------------------FVTRIQGEL-IFG 93 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEE-------------------EEEEETTEE-EEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCc-------------------ceeeECCEE-EEe
Q ss_pred cee
Q 042957 320 GYR 322 (371)
Q Consensus 320 G~~ 322 (371)
|..
T Consensus 94 Gve 96 (298)
T PF08950_consen 94 GVE 96 (298)
T ss_dssp EEE
T ss_pred eEE
No 232
>PRK10115 protease 2; Provisional
Probab=25.20 E-value=7.8e+02 Score=25.53 Aligned_cols=152 Identities=7% Similarity=-0.093 Sum_probs=72.3
Q ss_pred ccceEEEEECCCCeeeecCCCCCCCCCeeEEEE-CCEEEEEcCCCCCCCCCCCceEEEEeCCCCce--EeCCCCCCCcee
Q 042957 106 VLAWVLRYNVKSNEWTRCAPLSVPRYDFACTVC-DNKIYVAGGKSNLFSAKGTASAEVYHPELDQW--TPLPNMSTLRYK 182 (371)
Q Consensus 106 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W--~~~~~~p~~~~~ 182 (371)
...++++.|+.++.. ++....... +.++.. +++-+++...+. .......++++++.+..- ..+-.-+.....
T Consensus 151 E~~~l~v~d~~tg~~--l~~~i~~~~-~~~~w~~D~~~~~y~~~~~--~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~ 225 (686)
T PRK10115 151 RQYGIRFRNLETGNW--YPELLDNVE-PSFVWANDSWTFYYVRKHP--VTLLPYQVWRHTIGTPASQDELVYEEKDDTFY 225 (686)
T ss_pred EEEEEEEEECCCCCC--CCccccCcc-eEEEEeeCCCEEEEEEecC--CCCCCCEEEEEECCCChhHCeEEEeeCCCCEE
Confidence 356788889887742 122111112 333333 444333333321 112347899999988732 222211112222
Q ss_pred eEEEEE-CCEEEEEecccCCCCCCCCccccccCeeEEEEC--CCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCc
Q 042957 183 CVGVTW-QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDT--QAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAW 259 (371)
Q Consensus 183 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~ 259 (371)
...... +++..++....... +.++.|+. .+..|..+...+.... ......++.+|+.-... ..
T Consensus 226 ~~~~~s~d~~~l~i~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ly~~tn~~-~~ 291 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASATT-----------SEVLLLDAELADAEPFVFLPRRKDHE--YSLDHYQHRFYLRSNRH-GK 291 (686)
T ss_pred EEEEEcCCCCEEEEEEECCcc-----------ccEEEEECcCCCCCceEEEECCCCCE--EEEEeCCCEEEEEEcCC-CC
Confidence 222233 55543454433322 46777774 3344433322222211 13444567888875432 12
Q ss_pred cCeEEEEeCC-CCceEee
Q 042957 260 KGHIESYDGE-LNMWDEV 276 (371)
Q Consensus 260 ~~~~~~yd~~-~~~W~~~ 276 (371)
.-.+...++. ...|+.+
T Consensus 292 ~~~l~~~~~~~~~~~~~l 309 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEEL 309 (686)
T ss_pred CceEEEecCCCcccCeEE
Confidence 2347777776 5789888
No 233
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=25.15 E-value=5.8e+02 Score=24.01 Aligned_cols=149 Identities=12% Similarity=0.126 Sum_probs=76.1
Q ss_pred cceEEEEE-CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCCC--CCeeEEEECCEE
Q 042957 66 KGFSIVSL-GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVPR--YDFACTVCDNKI 142 (371)
Q Consensus 66 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~l 142 (371)
..|++... ++.+.+-||.+ ...+.++..+..|-- .++.-. .......+++.+
T Consensus 66 svFavsl~P~~~l~aTGGgD-----------------------D~AflW~~~~ge~~~--eltgHKDSVt~~~Fshdgtl 120 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD-----------------------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTL 120 (399)
T ss_pred ceEEEEeCCCCceEEecCCC-----------------------ceEEEEEccCCccee--EecCCCCceEEEEEccCceE
Confidence 44555555 56788888875 345666776776422 222222 223444568888
Q ss_pred EEEcCCCCCCCCCCCceEEEEeCCCC--ceEeCCC---CCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeE
Q 042957 143 YVAGGKSNLFSAKGTASAEVYHPELD--QWTPLPN---MSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAE 217 (371)
Q Consensus 143 yv~GG~~~~~~~~~~~~~~~yd~~t~--~W~~~~~---~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~ 217 (371)
++-|+.++ .+.+|+..++ +|.-..+ +--.+.++ ...|+++|-.+ .+++
T Consensus 121 LATGdmsG--------~v~v~~~stg~~~~~~~~e~~dieWl~WHp-----~a~illAG~~D--------------GsvW 173 (399)
T KOG0296|consen 121 LATGDMSG--------KVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-----RAHILLAGSTD--------------GSVW 173 (399)
T ss_pred EEecCCCc--------cEEEEEcccCceEEEeecccCceEEEEecc-----cccEEEeecCC--------------CcEE
Confidence 88888763 4666665554 5654322 11111111 23455566322 3678
Q ss_pred EEECCCCceeec-cccccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 218 VYDTQAGKWDLV-ARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 218 ~yd~~t~~W~~~-~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
+|...++.-.++ .....+.. .+-..-++|..+.|-.+. .+.++|+++.+
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct--~G~f~pdGKr~~tgy~dg----ti~~Wn~ktg~ 223 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCT--CGEFIPDGKRILTGYDDG----TIIVWNPKTGQ 223 (399)
T ss_pred EEECCCcceeeEecCCCCCcc--cccccCCCceEEEEecCc----eEEEEecCCCc
Confidence 887777533322 21111111 122233555555543322 58888888763
No 234
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=24.96 E-value=4.6e+02 Score=27.24 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred EEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCCCCCccCeE
Q 042957 184 VGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 184 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 263 (371)
+.++.++++.++.|.. .++-.++..+. +-+..++.. ...+...+-+++.+++|+.++. +
T Consensus 378 sl~vS~d~~~~~Sga~--------------~SikiWn~~t~--kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Ge----l 436 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG--------------ESIKIWNRDTL--KCIRTITCG-YILASKFVPGDRYIVLGTKNGE----L 436 (888)
T ss_pred EEEeecCceeeeecCC--------------CcEEEEEccCc--ceeEEeccc-cEEEEEecCCCceEEEeccCCc----e
Q ss_pred EEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceeecccccceeeEEEEee
Q 042957 264 ESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRMAGELARTMSMVHIFD 338 (371)
Q Consensus 264 ~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~v~~~d 338 (371)
.+||..+..--+. .+-..+ -.+.-...-+++-++.||.+. +|-.||
T Consensus 437 ~vfdlaS~~l~Et-----i~AHdg---------------aIWsi~~~pD~~g~vT~saDk---------tVkfWd 482 (888)
T KOG0306|consen 437 QVFDLASASLVET-----IRAHDG---------------AIWSISLSPDNKGFVTGSADK---------TVKFWD 482 (888)
T ss_pred EEEEeehhhhhhh-----hhcccc---------------ceeeeeecCCCCceEEecCCc---------EEEEEe
No 235
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.37 E-value=6.4e+02 Score=24.24 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=66.9
Q ss_pred EEEEECCCCeeeecCCCCCCCCCeeEEE-ECCEEEEEcCCCCCCCCCCCceEEEEeCCC---CceEeCCCCCCCceeeEE
Q 042957 110 VLRYNVKSNEWTRCAPLSVPRYDFACTV-CDNKIYVAGGKSNLFSAKGTASAEVYHPEL---DQWTPLPNMSTLRYKCVG 185 (371)
Q Consensus 110 v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t---~~W~~~~~~p~~~~~~~~ 185 (371)
++..|..++.-...-+-..+-+-.+++- .++.=+|.|+.+ ..+..+|... +.|+-+.. ++-+-.+
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d--------r~i~~wdlDgn~~~~W~gvr~---~~v~dla 361 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD--------RTIIMWDLDGNILGNWEGVRD---PKVHDLA 361 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC--------CcEEEecCCcchhhccccccc---ceeEEEE
Confidence 5666666554332211111222223333 377778888875 3567777654 47876654 3433333
Q ss_pred EEECCE-EEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeE-EEECCEEEEEcCCCCCccCeE
Q 042957 186 VTWQGK-IHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQI-VEVDNRLFSSGDCLKAWKGHI 263 (371)
Q Consensus 186 ~~~~~~-lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~ 263 (371)
...+|+ +++++ .-..+..|+.++..=..+- ....+.... ..-++++.++.= ....+
T Consensus 362 it~Dgk~vl~v~---------------~d~~i~l~~~e~~~dr~li---se~~~its~~iS~d~k~~LvnL----~~qei 419 (519)
T KOG0293|consen 362 ITYDGKYVLLVT---------------VDKKIRLYNREARVDRGLI---SEEQPITSFSISKDGKLALVNL----QDQEI 419 (519)
T ss_pred EcCCCcEEEEEe---------------cccceeeechhhhhhhccc---cccCceeEEEEcCCCcEEEEEc----ccCee
Confidence 445554 66666 1245667776654322121 111112222 233666666632 23458
Q ss_pred EEEeCCCCceEee
Q 042957 264 ESYDGELNMWDEV 276 (371)
Q Consensus 264 ~~yd~~~~~W~~~ 276 (371)
..+|++ .|..+
T Consensus 420 ~LWDl~--e~~lv 430 (519)
T KOG0293|consen 420 HLWDLE--ENKLV 430 (519)
T ss_pred EEeecc--hhhHH
Confidence 889998 45555
No 236
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=24.34 E-value=5.6e+02 Score=23.52 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=59.6
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECC-EEEEEcCCCCCCCCCCCceEEEEeCCCC------c--eEeCCCCC
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDN-KIYVAGGKSNLFSAKGTASAEVYHPELD------Q--WTPLPNMS 177 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~yd~~t~------~--W~~~~~~p 177 (371)
...+|++|+. .+..++-.-.....+..+..-++ .+|+. + ...+.+++|+.... + +... +..
T Consensus 142 ~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~a---D-----T~~~~i~r~~~d~~~g~~~~~~~~~~~-~~~ 211 (307)
T COG3386 142 TGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVA---D-----TPANRIHRYDLDPATGPIGGRRGFVDF-DEE 211 (307)
T ss_pred cceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEE---e-----CCCCeEEEEecCcccCccCCcceEEEc-cCC
Confidence 4478888873 44443322111222333333344 55555 1 12356777765421 1 1111 112
Q ss_pred CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEEC---CEEEEEcC
Q 042957 178 TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVD---NRLFSSGD 254 (371)
Q Consensus 178 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~---~~iyv~GG 254 (371)
.++-.-.++=.++.||+.....+ ..+.+|++. .+=...-.+|.... ..++.-+ +.|||..-
T Consensus 212 ~G~PDG~~vDadG~lw~~a~~~g-------------~~v~~~~pd-G~l~~~i~lP~~~~--t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 212 PGLPDGMAVDADGNLWVAAVWGG-------------GRVVRFNPD-GKLLGEIKLPVKRP--TNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCceEEeCCCCEEEecccCC-------------ceEEEECCC-CcEEEEEECCCCCC--ccceEeCCCcCEEEEEec
Confidence 22323333445788997554332 368999999 43333334453322 2344444 68888865
Q ss_pred CC
Q 042957 255 CL 256 (371)
Q Consensus 255 ~~ 256 (371)
..
T Consensus 276 ~~ 277 (307)
T COG3386 276 RS 277 (307)
T ss_pred CC
Confidence 43
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=23.92 E-value=4.3e+02 Score=22.11 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=40.0
Q ss_pred CCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEE
Q 042957 139 DNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEV 218 (371)
Q Consensus 139 ~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~ 218 (371)
++++.++-|.. ...+.+||.+ .+.+..++........-.-++++.+++|..... ..++.
T Consensus 71 g~~favi~g~~-------~~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~-----------G~l~~ 129 (194)
T PF08662_consen 71 GNEFAVIYGSM-------PAKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLN-----------GDLEF 129 (194)
T ss_pred CCEEEEEEccC-------CcccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCCC-----------cEEEE
Confidence 56676665532 2378899986 333333333222222223478888888865432 46889
Q ss_pred EECCCCceeeccc
Q 042957 219 YDTQAGKWDLVAR 231 (371)
Q Consensus 219 yd~~t~~W~~~~~ 231 (371)
||..+ .+.+..
T Consensus 130 wd~~~--~~~i~~ 140 (194)
T PF08662_consen 130 WDVRK--KKKIST 140 (194)
T ss_pred EECCC--CEEeec
Confidence 99984 344443
No 238
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=22.36 E-value=1.3e+02 Score=16.22 Aligned_cols=21 Identities=5% Similarity=0.192 Sum_probs=16.0
Q ss_pred eeeeeEeeeCCeEEEEcceee
Q 042957 303 RLYLTMAPIGTHLYFLAGYRM 323 (371)
Q Consensus 303 r~~~~~~~~~~~l~v~GG~~~ 323 (371)
+.+.-++.+|++..++|+.+.
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N~ 24 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSANL 24 (28)
T ss_pred cEEeEEEEEcCCEEEEeCccC
Confidence 455667888999888998754
No 239
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=22.08 E-value=1.1e+03 Score=25.94 Aligned_cols=172 Identities=13% Similarity=0.058 Sum_probs=86.2
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEE--E---CC-EEEEEcCCCCCCC---CCCCceEEEEeCCCC--ceEeCCC
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTV--C---DN-KIYVAGGKSNLFS---AKGTASAEVYHPELD--QWTPLPN 175 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~---~~-~lyv~GG~~~~~~---~~~~~~~~~yd~~t~--~W~~~~~ 175 (371)
.+.+.++|+.+++-...-.++..-..++++. + +. -+..+|+...... .-....++.|+...+ +-+-+..
T Consensus 852 ~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~ 931 (1205)
T KOG1898|consen 852 VSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK 931 (1205)
T ss_pred cceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec
Confidence 4456677776665444333333222222222 2 22 2455555432110 011234677765432 2333332
Q ss_pred CCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCceeeccccccCCCCCCeEEEECCEEEEEcCC
Q 042957 176 MSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDC 255 (371)
Q Consensus 176 ~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~ 255 (371)
...+-.-++++...+.+++ | .-+.+.+||+-.++-.+...+..-+.....+.....+|+| |-.
T Consensus 932 T~~~~~v~Ai~~f~~~~La-g---------------vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~V-gD~ 994 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQGRVLA-G---------------VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVV-GDI 994 (1205)
T ss_pred cCCCccceEEeccCCEEEE-e---------------cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEE-eec
Confidence 2222233455556664443 2 2267899999887765555443322222233334445544 443
Q ss_pred CCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEE
Q 042957 256 LKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYF 317 (371)
Q Consensus 256 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v 317 (371)
..+ -..++|+++.|+...+ .+-+.+ |.-.++..++..-.+
T Consensus 995 qeS--V~~~~y~~~~n~l~~f-----adD~~p---------------R~Vt~~~~lD~~tva 1034 (1205)
T KOG1898|consen 995 QES--VHFVRYRREDNQLIVF-----ADDPVP---------------RHVTALELLDYDTVA 1034 (1205)
T ss_pred cce--EEEEEEecCCCeEEEE-----eCCCcc---------------ceeeEEEEecCCcee
Confidence 322 2588999999999988 665544 766666666544333
No 240
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=21.88 E-value=6.4e+02 Score=23.35 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=28.7
Q ss_pred ceEEEEECCCCeeeecCCCCCCCCCeeEEE---ECCEEEEEcCCCCCCCCCCCceEEEEeCCCCc
Q 042957 108 AWVLRYNVKSNEWTRCAPLSVPRYDFACTV---CDNKIYVAGGKSNLFSAKGTASAEVYHPELDQ 169 (371)
Q Consensus 108 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~ 169 (371)
..+..||+.|.. ++.+..++......+ -+++.++...++ .++-.||....+
T Consensus 45 G~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D--------~si~lwDl~~gs 98 (405)
T KOG1273|consen 45 GRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRD--------WSIKLWDLLKGS 98 (405)
T ss_pred CcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCC--------ceeEEEeccCCC
Confidence 457888887655 344433333332222 266666665554 457777777665
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=21.76 E-value=6.4e+02 Score=25.29 Aligned_cols=122 Identities=15% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECC--CCceeeccccccCCCCCCeEEEECCEEEEEcCC
Q 042957 178 TLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQ--AGKWDLVARMWQLDIPPNQIVEVDNRLFSSGDC 255 (371)
Q Consensus 178 ~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~~~~iyv~GG~ 255 (371)
....+++=--.+++..++.|.... +++..|.++ ..+|+.+..+..... .+-.-.-.|+.+++++-
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k------------~tvsfY~~e~~~~~~~lVk~~dk~~~-N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVK------------NTVSFYAVETNIKKPSLVKELDKKFA-NTVFWSPKGRFVVVAAL 512 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccc------------cceeEEEeecCCCchhhhhhhccccc-ceEEEcCCCcEEEEEEe
Confidence 333444444568888888887653 345555555 557887776665322 21112235666666554
Q ss_pred CCCccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeee------CC-eEEEEccee
Q 042957 256 LKAWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPI------GT-HLYFLAGYR 322 (371)
Q Consensus 256 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~------~~-~l~v~GG~~ 322 (371)
.+ ...+++-||.....-+.+.. +.- ...+...|.|.+|+..+.... ++ +||-|-|+-
T Consensus 513 ~s-~~g~l~F~D~~~a~~k~~~~---~eh------~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 513 VS-RRGDLEFYDTDYADLKDTAS---PEH------FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred cc-cccceEEEecchhhhhhccC---ccc------cccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 32 33479999998533333311 111 112335688999988887764 22 688887763
No 242
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=21.65 E-value=6e+02 Score=22.94 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=78.2
Q ss_pred cceEEEEECCCCeeeecCCCCCCCCCeeEEEECCEEEEEcCCCCCCCCCCCceEEEEeCCCCceEeCCC-----CCCCce
Q 042957 107 LAWVLRYNVKSNEWTRCAPLSVPRYDFACTVCDNKIYVAGGKSNLFSAKGTASAEVYHPELDQWTPLPN-----MSTLRY 181 (371)
Q Consensus 107 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~yd~~t~~W~~~~~-----~p~~~~ 181 (371)
.+.+-..|..+++-...-..+.+.... -...++.++++---. .-.....+.+||.....=..... +|.+-.
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~-~F~~~gn~~l~~tD~---~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRV-DFSFGGNLILASTDK---QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEE-eeccCCcEEEEEehh---hcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 345566677777643332333222211 112344444442211 22345778889887543222221 122223
Q ss_pred eeEEEEE--CCEEEEEecccCCCCCCCCccccccCeeEEEECCCCc-eeeccccccCCCCCCeEEEE-CCEEEEEcCCCC
Q 042957 182 KCVGVTW--QGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGK-WDLVARMWQLDIPPNQIVEV-DNRLFSSGDCLK 257 (371)
Q Consensus 182 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~ 257 (371)
....+.. -++..|.|..+ ..+-.||.+++. .......-.. ...-+... +...++.|..+.
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~--------------G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHED--------------GSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred ceeeeeecccCCEEEEecCC--------------CcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEecccCc
Confidence 3333433 34455566533 367889998863 2111111111 01112222 444555554333
Q ss_pred CccCeEEEEeCCCCceEeecCcccccCCCCcccCCCCCCCCCCceeeeeeEeeeCCeEEEEcceee
Q 042957 258 AWKGHIESYDGELNMWDEVNGSCLQTLSSPVSTSSTNTEDWPPIQRLYLTMAPIGTHLYFLAGYRM 323 (371)
Q Consensus 258 ~~~~~~~~yd~~~~~W~~~~~~~~~~l~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 323 (371)
....+|..+-+-.+- ..... |....++..+.+++++-||...
T Consensus 213 ----takl~D~~tl~v~Kt---y~te~-----------------PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 213 ----TAKLVDVRTLEVLKT---YTTER-----------------PVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ----cceeeeccceeeEEE---eeecc-----------------cccceecccccceEEecCCcee
Confidence 244455544322221 00122 2456677778889877777654
No 243
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.38 E-value=6.4e+02 Score=23.09 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeee---ecCC-CCCCCCCeeEEEE-C-CEEEEEcC
Q 042957 74 GDSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWT---RCAP-LSVPRYDFACTVC-D-NKIYVAGG 147 (371)
Q Consensus 74 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~-~~~~r~~~~~~~~-~-~~lyv~GG 147 (371)
.+.....||.+ +.+-+|+..+..=+ ++.. ++.-..+.+++.+ + +.|+--.|
T Consensus 108 Sg~~VAcGGLd-----------------------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG 164 (343)
T KOG0286|consen 108 SGNFVACGGLD-----------------------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG 164 (343)
T ss_pred CCCeEEecCcC-----------------------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC
Confidence 56777788885 56777877654322 2222 2222233344443 3 34443333
Q ss_pred CCCCCCCCCCceEEEEeCCCCceEeCCC-CCCCceeeEEEEECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce
Q 042957 148 KSNLFSAKGTASAEVYHPELDQWTPLPN-MSTLRYKCVGVTWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW 226 (371)
Q Consensus 148 ~~~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W 226 (371)
- ..+-.+|+++.+=...-. -............+.+.||-||.+ .....+|.+...=
T Consensus 165 D---------~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD--------------~~aklWD~R~~~c 221 (343)
T KOG0286|consen 165 D---------MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD--------------KSAKLWDVRSGQC 221 (343)
T ss_pred C---------ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc--------------cceeeeeccCcce
Confidence 2 368889998874322211 000011111112277899999855 4557788777632
Q ss_pred eeccccccCCCCCCeEEEE-CCEEEEEcCCCCCccCeEEEEeCCCCceE
Q 042957 227 DLVARMWQLDIPPNQIVEV-DNRLFSSGDCLKAWKGHIESYDGELNMWD 274 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~yd~~~~~W~ 274 (371)
. +.++.-..-..++... ++.-++.|..+. .+..||+..++=-
T Consensus 222 ~--qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 222 V--QTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDLRADQEL 264 (343)
T ss_pred e--EeecccccccceEEEccCCCeeeecCCCc----eeEEEeecCCcEE
Confidence 2 2222111111233333 555566554333 4888888876533
No 244
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=21.34 E-value=6.6e+02 Score=23.22 Aligned_cols=95 Identities=7% Similarity=0.027 Sum_probs=47.3
Q ss_pred ceEEEEeCCCCceEeCCCCCCCceeeEEE-E---ECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCce-eecccc
Q 042957 158 ASAEVYHPELDQWTPLPNMSTLRYKCVGV-T---WQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKW-DLVARM 232 (371)
Q Consensus 158 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~---~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W-~~~~~~ 232 (371)
..+..||..|-+.=.-+. |......++. + -.++||+.|..++ .+-+||-.+++- +.+...
T Consensus 238 p~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG--------------~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDG--------------AIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred CceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCC--------------cEEeeccccHHHHHHHHhh
Confidence 457788888765422222 3322211222 1 2678999997553 466777776653 233322
Q ss_pred ccCCCCCCeEEEECCEEEEEcCCCCCccCeEEEEeCCCC
Q 042957 233 WQLDIPPNQIVEVDNRLFSSGDCLKAWKGHIESYDGELN 271 (371)
Q Consensus 233 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~yd~~~~ 271 (371)
-.......+...-+++.++..|-+.. +..+.+.++
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~----vkLWEi~t~ 337 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDST----VKLWEISTG 337 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcce----eeeeeecCC
Confidence 22211111233346666666665442 555455443
No 245
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=20.21 E-value=1.7e+02 Score=16.16 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=12.4
Q ss_pred cceEEEEE-CCEEEEEcCc
Q 042957 66 KGFSIVSL-GDSVYIIGGL 83 (371)
Q Consensus 66 ~~~~~~~~-~~~iyv~GG~ 83 (371)
..|+++.. +++||.+|--
T Consensus 8 ~~ht~al~~~g~v~~wG~n 26 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGDN 26 (30)
T ss_dssp SSEEEEEE-TTEEEEEE--
T ss_pred CCEEEEEEcCCCEEEEcCC
Confidence 45677776 6899999853
No 246
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.16 E-value=1.4e+02 Score=16.36 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=11.6
Q ss_pred eEEEEeeccccccccc
Q 042957 332 SMVHIFDTAAKSDAWR 347 (371)
Q Consensus 332 ~~v~~~d~~~~~~~W~ 347 (371)
..++.+|.++....|+
T Consensus 16 g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 16 GTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEEcccCcEEEE
Confidence 4678888877766675
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=20.10 E-value=7e+02 Score=23.06 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred CEEEEEcCcccccCCCCCCCCCCccccccccccceEEEEECCCCeeeecCCCCCC------CCCeeEEEECCEEEEEcCC
Q 042957 75 DSVYIIGGLLCHKERAHNSDESDDFVDAYDKVLAWVLRYNVKSNEWTRCAPLSVP------RYDFACTVCDNKIYVAGGK 148 (371)
Q Consensus 75 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~------r~~~~~~~~~~~lyv~GG~ 148 (371)
|.+-++||....+ -..+.+..+|-....-..-..+..+ |..+.+++..++|||+
T Consensus 59 N~laLVGGg~~pk-----------------y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vy--- 118 (346)
T KOG2111|consen 59 NYLALVGGGSRPK-----------------YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVY--- 118 (346)
T ss_pred ceEEEecCCCCCC-----------------CCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEE---
Q ss_pred CCCCCCCCCceEEEEeCCCCceEeCCCCCCCceeeEEE-EECCEEEEEecccCCCCCCCCccccccCeeEEEECCCCcee
Q 042957 149 SNLFSAKGTASAEVYHPELDQWTPLPNMSTLRYKCVGV-TWQGKIHVVSGFAQRADSDGSVHFTERSSAEVYDTQAGKWD 227 (371)
Q Consensus 149 ~~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~ 227 (371)
........+..+|...+ |..-++.+ ..+..+.+|-|... ..+++-|+...+-.
T Consensus 119 ---tF~~n~k~l~~~et~~N----------PkGlC~~~~~~~k~~LafPg~k~-------------GqvQi~dL~~~~~~ 172 (346)
T KOG2111|consen 119 ---TFPDNPKLLHVIETRSN----------PKGLCSLCPTSNKSLLAFPGFKT-------------GQVQIVDLASTKPN 172 (346)
T ss_pred ---EcCCChhheeeeecccC----------CCceEeecCCCCceEEEcCCCcc-------------ceEEEEEhhhcCcC
Q ss_pred eccccccCCCCCCeEEEE--CCEEEEEcCCCCCccCeEEEEeCCCCc
Q 042957 228 LVARMWQLDIPPNQIVEV--DNRLFSSGDCLKAWKGHIESYDGELNM 272 (371)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~yd~~~~~ 272 (371)
-+.........-+++.+ +|.++..+...+. -|.+||..+++
T Consensus 173 -~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT---LIRIFdt~~g~ 215 (346)
T KOG2111|consen 173 -APSIINAHDSDIACVALNLQGTLVATASTKGT---LIRIFDTEDGT 215 (346)
T ss_pred -CceEEEcccCceeEEEEcCCccEEEEeccCcE---EEEEEEcCCCc
Done!